BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030532
(175 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6AXT7|RBM42_RAT RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1
Length = 474
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 45/52 (86%)
Query: 119 RKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
R AAG +WEDP+L EW +D+R+FCGDLGNEVNDD+L++AFSRFPSF AKV
Sbjct: 355 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKV 406
>sp|Q0P5L0|RBM42_BOVIN RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1
Length = 448
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 45/52 (86%)
Query: 119 RKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
R AAG +WEDP+L EW +D+R+FCGDLGNEVNDD+L++AFSRFPSF AKV
Sbjct: 329 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKV 380
>sp|Q91V81|RBM42_MOUSE RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1
Length = 474
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 45/52 (86%)
Query: 119 RKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
R AAG +WEDP+L EW +D+R+FCGDLGNEVNDD+L++AFSRFPSF AKV
Sbjct: 355 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKV 406
>sp|Q9BTD8|RBM42_HUMAN RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1
Length = 480
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 45/52 (86%)
Query: 119 RKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
R AAG +WEDP+L EW +D+R+FCGDLGNEVNDD+L++AFSRFPSF AKV
Sbjct: 361 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKV 412
>sp|Q66KL9|RBM42_XENTR RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1
Length = 392
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 44/52 (84%)
Query: 119 RKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
R AAG +WED +L EW +D+R+FCGDLGNEVNDD+L++AFSR+PSF AKV
Sbjct: 273 RTAAGTSWEDQSLLEWESDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKV 324
>sp|Q6DRG1|RBM42_DANRE RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2
Length = 402
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 44/52 (84%)
Query: 119 RKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
R AAG +WED +L EW +D+R+FCGDLGNEVNDD+L++AFSR+PSF AKV
Sbjct: 283 RVAAGVSWEDTSLLEWETDDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKV 334
>sp|A2VDB3|RBM42_XENLA RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2 SV=1
Length = 392
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 44/52 (84%)
Query: 119 RKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
R AAG +WED +L EW +D+R+FCGDLGNEVNDD+L++AFSR+PSF AKV
Sbjct: 273 RTAAGTSWEDQSLLEWEPDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKV 324
>sp|Q10355|YDB2_SCHPO Uncharacterized RNA-binding protein C22E12.02
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC22E12.02 PE=4 SV=1
Length = 219
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 41/57 (71%)
Query: 114 KKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
K ++ RKA GQ WEDPTL EW N +RLF G+LGN+VND+ L +AFS +PS KV
Sbjct: 5 KTTVVRKAGGQVWEDPTLLEWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKV 61
>sp|P38760|MIP6_YEAST RNA-binding protein MIP6 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MIP6 PE=1 SV=1
Length = 659
Score = 35.0 bits (79), Expect = 0.27, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 22/109 (20%)
Query: 83 QRDAQTITPEALESVKAA--------LASSDIEHKAETKK-----KSIPRKAAGQTWEDP 129
Q+ +TI+ +AL V+ A L ++++ K KK + +K Q +E
Sbjct: 35 QKSFKTISAQALVRVQGAGYKLGDVKLKDAEVKEKNSLKKYDCKNATQEKKEQEQVFEK- 93
Query: 130 TLAEWPENDY--------RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
T+A+ Y LF G+L + V +++L K F R+ SF AKV
Sbjct: 94 TVAKGSVQKYITKTSKTNSLFIGNLKSTVTEEMLRKIFKRYQSFESAKV 142
>sp|Q45078|OMP2B_BRUCA Porin omp2b OS=Brucella canis GN=omp2b PE=3 SV=2
Length = 362
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCFT 175
E+++ F G LG+ +NDDV+S S+ K+S+ FT
Sbjct: 150 ESEFHTFTGYLGDVINDDVISAG-----SYRTGKISYTFT 184
>sp|A9MA15|OMP2B_BRUC2 Porin omp2b OS=Brucella canis (strain ATCC 23365 / NCTC 10854)
GN=omp2b PE=3 SV=2
Length = 362
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCFT 175
E+++ F G LG+ +NDDV+S S+ K+S+ FT
Sbjct: 150 ESEFHTFTGYLGDVINDDVISAG-----SYRTGKISYTFT 184
>sp|Q44619|OMP2B_BRUAB Porin omp2b OS=Brucella abortus biovar 1 (strain 9-941) GN=omp2b
PE=1 SV=2
Length = 362
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCFT 175
E+++ F G LG+ +NDDV+S S+ K+S+ FT
Sbjct: 150 ESEFHTFTGYLGDVINDDVISAG-----SYRTGKISYTFT 184
>sp|Q2YMY7|OMP2B_BRUA2 Porin omp2b OS=Brucella abortus (strain 2308) GN=omp2b PE=3 SV=2
Length = 362
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCFT 175
E+++ F G LG+ +NDDV+S S+ K+S+ FT
Sbjct: 150 ESEFHTFTGYLGDVINDDVISAG-----SYRTGKISYTFT 184
>sp|Q44665|OMP2B_BRUA1 Porin omp2b OS=Brucella abortus (strain S19) GN=omp2b PE=1 SV=1
Length = 362
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCFT 175
E+++ F G LG+ +NDDV+S S+ K+S+ FT
Sbjct: 150 ESEFHTFTGYLGDVINDDVISAG-----SYRTGKISYTFT 184
>sp|P0DI95|OMP2B_BRUSU Porin omp2b OS=Brucella suis biovar 1 (strain 1330) GN=omp2b PE=3
SV=1
Length = 362
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCFT 175
E+++ F G LG+ +NDDV+S S+ K+S+ FT
Sbjct: 150 ESEFHTFTGYLGDVINDDVISAG-----SYRTGKISYTFT 184
>sp|Q45324|OMP2B_BRUNE Porin omp2b OS=Brucella neotomae GN=omp2b PE=3 SV=2
Length = 362
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCFT 175
E+++ F G LG+ +NDDV+S S+ K+S+ FT
Sbjct: 150 ESEFHTFTGYLGDVINDDVISAG-----SYRTGKISYTFT 184
>sp|Q8YG56|OMP2B_BRUME Porin omp2b OS=Brucella melitensis biotype 1 (strain 16M / ATCC
23456 / NCTC 10094) GN=omp2b PE=1 SV=2
Length = 362
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCFT 175
E+++ F G LG+ +NDDV+S S+ K+S+ FT
Sbjct: 150 ESEFHTFTGYLGDVINDDVISAG-----SYRTGKISYTFT 184
>sp|B0CKW5|OMP2B_BRUSI Porin omp2b OS=Brucella suis (strain ATCC 23445 / NCTC 10510)
GN=omp2b PE=3 SV=2
Length = 362
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCFT 175
E+++ F G LG+ +NDDV+S S+ K+S+ FT
Sbjct: 150 ESEFHTFTGYLGDVINDDVISAG-----SYRTGKISYTFT 184
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 115 KSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSF 165
K I W + ++ + LF GDL V+D+ L AF FPS+
Sbjct: 138 KQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSY 188
>sp|P0DI96|OMP2B_BRUSS Porin omp2b OS=Brucella suis GN=omp2b PE=1 SV=1
Length = 375
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCFT 175
E++++ F G LG+ +NDDV+S ++ K+S+ FT
Sbjct: 149 ESEFQTFTGYLGDVINDDVISAG-----TYRTGKISYTFT 183
>sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2
PE=1 SV=1
Length = 225
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 123 GQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
G + +P + ++P N Y LF +L E N+ +LS F++FP F ++
Sbjct: 136 GNSTPNPQVPDYPPN-YILFLNNLPEETNEMMLSMLFNQFPGFKEVRL 182
>sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2
PE=2 SV=1
Length = 225
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 128 DPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
+P + ++P N Y LF +L E N+ +LS F++FP F ++
Sbjct: 141 NPQVPDYPPN-YILFLNNLPEETNEMMLSMLFNQFPGFKEVRL 182
>sp|Q2HEB0|PRP28_CHAGB Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=PRP28 PE=3 SV=1
Length = 705
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 61 VYAAPVAPVYSLPQYHQAQQLFQRDAQTI---TPEALESVKAALASSDIEHKAETKKKSI 117
VYA + L Y +L R A+ I PE E L + E K++
Sbjct: 172 VYAERPESLVRLAGYENTDELVLRKAEAIRRGDPETGEERARKLL-----EQHERVKQAA 226
Query: 118 PRKAAGQTWEDPTLAEWPENDYRLFCGDLG 147
RK G+ W + L + E D+R+F + G
Sbjct: 227 ERKNFGKHWSEKKLEDMKERDWRIFKENFG 256
>sp|Q0CT11|CREB_ASPTN Probable ubiquitin carboxyl-terminal hydrolase creB OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=creB PE=3 SV=2
Length = 768
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 48/120 (40%), Gaps = 27/120 (22%)
Query: 18 APAAPTTANSSYFPLPFHLQQTDPTAVSQYPPPA-AYPAPVVPSVYAAPVAPVYSLPQYH 76
AP AP+ LP H + TD + P PA A P P +P ++ P++P S
Sbjct: 530 APTAPS--------LPTHYEHTDTNSAPSIPKPAMAPPVPPIPETHSMPLSPKKS----- 576
Query: 77 QAQQLFQRDAQTITPEALE--SVKAALASSDIEHKAE---TKKKSIPRKAAGQTWEDPTL 131
D Q+ A E KAA + + + E T+K+ R Q ED L
Sbjct: 577 --------DLQSRKERAKEEKERKAAEKERERQRRKEQEATRKEQEARARENQRREDAEL 628
>sp|Q7SEL0|PRP28_NEUCR Pre-mRNA-splicing ATP-dependent RNA helicase prp-28 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=prp-28 PE=3 SV=1
Length = 728
Score = 30.8 bits (68), Expect = 4.5, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 61 VYAAPVAPVYSLPQYHQAQQLFQRDAQTI---TPEALESVKAALASSDIEHKAETKKKSI 117
+YA P+ L Y +++ R A+ I PE E A +E K+
Sbjct: 196 IYAERQEPLVRLGGYEMTEEMVMRKAEAIRRGDPETGEE----RARQYLEQHRRIKEME- 250
Query: 118 PRKAAGQTWEDPTLAEWPENDYRLFCGDLG 147
RK G+ W + L + E D+R+F + G
Sbjct: 251 QRKNLGKHWSEKKLEDMKERDWRIFKENFG 280
>sp|O15891|TCPA_TETPY T-complex protein 1 subunit alpha OS=Tetrahymena pyriformis PE=3
SV=1
Length = 547
Score = 30.8 bits (68), Expect = 5.2, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 42/112 (37%)
Query: 57 VVPSVYAAPVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASSDIEHKAETKKKS 116
VVP A +A L + + ++ A EAL + LA++ + E K
Sbjct: 408 VVPGGGAVEIALSIKLEDFARTLGTKEQTAVAEFCEALNIIPKVLAANAAQDATELVSKL 467
Query: 117 IPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA 168
AA Q+ +DP E L G + N V VL S+ S A
Sbjct: 468 RALHAASQSSDDPAKKELKNCGLDLSLGKVRNNVKAGVLEPMVSKIKSLRFA 519
>sp|Q02642|NACB1_YEAST Nascent polypeptide-associated complex subunit beta-1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=EGD1 PE=1 SV=2
Length = 157
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 70 YSLPQYHQAQQLFQRDAQTITPEALESVKAALASSDIEHK------AETKKKSIPRKAAG 123
Y LPQ Q LF + PEA++++ + LA+ +H+ AE K ++IP G
Sbjct: 91 YGLPQEKNLQDLFPGIISQLGPEAIQAL-SQLAAQMEKHEAKAPADAEKKDEAIPELVEG 149
Query: 124 QTWE 127
QT++
Sbjct: 150 QTFD 153
>sp|A6ZWL1|NACB1_YEAS7 Nascent polypeptide-associated complex subunit beta-1
OS=Saccharomyces cerevisiae (strain YJM789) GN=EGD1 PE=3
SV=1
Length = 157
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 70 YSLPQYHQAQQLFQRDAQTITPEALESVKAALASSDIEHK------AETKKKSIPRKAAG 123
Y LPQ Q LF + PEA++++ + LA+ +H+ AE K ++IP G
Sbjct: 91 YGLPQEKNLQDLFPGIISQLGPEAIQAL-SQLAAQMEKHEAKAPADAEKKDEAIPELVEG 149
Query: 124 QTWE 127
QT++
Sbjct: 150 QTFD 153
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.126 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,549,500
Number of Sequences: 539616
Number of extensions: 2756258
Number of successful extensions: 11498
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 272
Number of HSP's that attempted gapping in prelim test: 10733
Number of HSP's gapped (non-prelim): 932
length of query: 175
length of database: 191,569,459
effective HSP length: 110
effective length of query: 65
effective length of database: 132,211,699
effective search space: 8593760435
effective search space used: 8593760435
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)