Query 030532
Match_columns 175
No_of_seqs 166 out of 636
Neff 3.2
Searched_HMMs 29240
Date Tue Mar 26 00:46:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030532.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030532hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fj7_A Nucleolin RBD1, protein 99.1 3.8E-11 1.3E-15 83.3 2.1 51 122-173 1-51 (101)
2 2la6_A RNA-binding protein FUS 98.9 3.5E-09 1.2E-13 73.2 6.3 49 126-174 1-57 (99)
3 2jrs_A RNA-binding protein 39; 98.9 5.7E-09 2E-13 74.6 7.0 58 117-174 5-62 (108)
4 4f25_A Polyadenylate-binding p 98.8 3.6E-09 1.2E-13 76.0 4.5 38 137-174 4-41 (115)
5 3d2w_A TAR DNA-binding protein 98.8 3.4E-09 1.2E-13 73.6 3.8 39 135-173 8-46 (89)
6 2rs2_A Musashi-1, RNA-binding 98.8 5.1E-09 1.7E-13 74.8 4.2 49 126-174 13-61 (109)
7 4fxv_A ELAV-like protein 1; RN 98.8 7.2E-09 2.5E-13 73.4 4.6 38 137-174 18-55 (99)
8 1sjq_A Polypyrimidine tract-bi 98.7 8.2E-09 2.8E-13 76.5 4.2 39 135-173 13-51 (105)
9 1x4c_A Splicing factor, argini 98.7 1.3E-08 4.5E-13 72.0 4.8 39 135-173 12-50 (108)
10 2dnh_A Bruno-like 5, RNA bindi 98.7 2.4E-08 8.1E-13 69.3 5.7 41 134-174 11-51 (105)
11 3s7r_A Heterogeneous nuclear r 98.7 2.2E-08 7.6E-13 67.3 5.3 40 135-174 8-47 (87)
12 1wf0_A TDP-43, TAR DNA-binding 98.7 1.3E-08 4.6E-13 68.9 4.1 38 136-173 3-40 (88)
13 3p5t_L Cleavage and polyadenyl 98.7 1.3E-08 4.6E-13 69.6 4.0 36 139-174 2-39 (90)
14 2dhg_A TRNA selenocysteine ass 98.7 2.2E-08 7.5E-13 69.4 5.0 39 136-174 7-46 (104)
15 3s8s_A Histone-lysine N-methyl 98.7 2.3E-08 7.7E-13 72.4 5.2 39 136-174 4-42 (110)
16 3md1_A Nuclear and cytoplasmic 98.7 2.1E-08 7.1E-13 66.5 4.5 36 139-174 2-37 (83)
17 3bs9_A Nucleolysin TIA-1 isofo 98.7 2E-08 6.9E-13 67.1 4.4 39 136-174 4-42 (87)
18 2xs2_A Deleted in azoospermia- 98.7 1.6E-08 5.4E-13 70.1 3.8 42 133-174 4-45 (102)
19 2cpy_A RNA-binding protein 12; 98.6 3E-08 1E-12 70.9 5.0 41 134-174 11-52 (114)
20 1s79_A Lupus LA protein; RRM, 98.6 2.9E-08 9.8E-13 71.3 4.7 39 136-174 9-47 (103)
21 2cqi_A Nucleolysin TIAR; RNA r 98.6 4E-08 1.4E-12 68.1 5.1 41 133-173 10-50 (103)
22 2dgp_A Bruno-like 4, RNA bindi 98.6 2.8E-08 9.7E-13 69.0 4.3 41 134-174 9-49 (106)
23 2cpz_A CUG triplet repeat RNA- 98.6 3.8E-08 1.3E-12 69.7 4.9 39 136-174 23-61 (115)
24 2dgs_A DAZ-associated protein 98.6 3.8E-08 1.3E-12 67.8 4.7 39 136-174 8-46 (99)
25 2dh8_A DAZ-associated protein 98.6 3.8E-08 1.3E-12 68.5 4.7 40 135-174 13-52 (105)
26 2div_A TRNA selenocysteine ass 98.6 4.9E-08 1.7E-12 67.0 5.2 39 136-174 7-46 (99)
27 2cpf_A RNA binding motif prote 98.6 4.4E-08 1.5E-12 67.2 5.0 39 136-174 3-41 (98)
28 2do0_A HnRNP M, heterogeneous 98.6 5.9E-08 2E-12 68.2 5.6 40 135-174 12-51 (114)
29 1x4h_A RNA-binding protein 28; 98.6 4.7E-08 1.6E-12 68.2 5.1 41 134-174 11-51 (111)
30 1x4e_A RNA binding motif, sing 98.6 3.2E-08 1.1E-12 66.3 4.0 39 136-174 3-41 (85)
31 2cq3_A RNA-binding protein 9; 98.6 6.1E-08 2.1E-12 67.2 5.5 41 134-174 11-51 (103)
32 2kn4_A Immunoglobulin G-bindin 98.6 3.7E-08 1.3E-12 72.8 4.6 42 133-174 65-106 (158)
33 2ywk_A Putative RNA-binding pr 98.6 4.5E-08 1.6E-12 66.5 4.8 39 136-174 14-52 (95)
34 4a8x_A RNA-binding protein wit 98.6 4.6E-08 1.6E-12 65.3 4.5 38 137-174 3-40 (88)
35 3mdf_A Peptidyl-prolyl CIS-tra 98.6 4.2E-08 1.4E-12 65.3 4.3 38 136-173 5-42 (85)
36 2cqg_A TDP-43, TAR DNA-binding 98.6 5.2E-08 1.8E-12 67.5 4.8 39 136-174 13-51 (103)
37 2cpj_A Non-POU domain-containi 98.6 9.6E-08 3.3E-12 66.0 6.1 39 135-173 12-50 (99)
38 2dnp_A RNA-binding protein 14; 98.6 4.2E-08 1.4E-12 66.7 4.1 39 135-173 6-44 (90)
39 2err_A Ataxin-2-binding protei 98.6 7.2E-08 2.5E-12 68.6 5.5 41 134-174 25-65 (109)
40 2dgv_A HnRNP M, heterogeneous 98.6 6.5E-08 2.2E-12 65.4 5.0 38 136-173 6-43 (92)
41 1x5u_A Splicing factor 3B subu 98.6 4.9E-08 1.7E-12 67.7 4.5 39 136-174 13-51 (105)
42 2mss_A Protein (musashi1); RNA 98.6 3.2E-08 1.1E-12 64.8 3.4 35 140-174 1-35 (75)
43 2i2y_A Fusion protein consists 98.6 5.3E-08 1.8E-12 72.0 4.9 42 132-173 67-108 (150)
44 2dgx_A KIAA0430 protein; RRM d 98.6 3.7E-08 1.3E-12 68.3 3.8 39 136-174 7-49 (96)
45 2dnz_A Probable RNA-binding pr 98.6 6.8E-08 2.3E-12 65.7 5.0 39 136-174 3-41 (95)
46 2khc_A Testis-specific RNP-typ 98.6 4.6E-08 1.6E-12 69.3 4.3 39 136-174 38-76 (118)
47 2ad9_A Polypyrimidine tract-bi 98.6 5.8E-08 2E-12 73.1 5.1 37 137-173 30-66 (119)
48 1x5t_A Splicing factor 3B subu 98.6 5.4E-08 1.8E-12 66.3 4.5 38 136-173 3-41 (96)
49 1x4d_A Matrin 3; structural ge 98.6 2.6E-08 9E-13 72.6 3.1 38 137-174 14-52 (102)
50 2dgo_A Cytotoxic granule-assoc 98.6 5.9E-08 2E-12 68.5 4.8 39 136-174 13-51 (115)
51 1wg5_A Heterogeneous nuclear r 98.6 4.8E-08 1.6E-12 68.8 4.3 41 134-174 11-52 (104)
52 1uaw_A Mouse-musashi-1; RNP-ty 98.6 4.2E-08 1.4E-12 64.2 3.7 35 140-174 2-36 (77)
53 3pgw_S U1-70K; protein-RNA com 98.6 1E-07 3.5E-12 84.2 7.2 38 137-174 101-138 (437)
54 2cqd_A RNA-binding region cont 98.6 6.3E-08 2.2E-12 68.6 4.8 40 135-174 14-53 (116)
55 2j76_E EIF-4B, EIF4B, eukaryot 98.6 2E-08 6.8E-13 70.1 2.1 44 130-174 11-54 (100)
56 2db1_A Heterogeneous nuclear r 98.6 1E-07 3.5E-12 69.0 6.0 42 133-174 12-56 (118)
57 2dgt_A RNA-binding protein 30; 98.6 6.8E-08 2.3E-12 65.9 4.8 39 135-173 7-45 (92)
58 2lmi_A GRSF-1, G-rich sequence 98.6 4.9E-08 1.7E-12 69.1 4.1 42 133-174 6-50 (107)
59 2cqb_A Peptidyl-prolyl CIS-tra 98.6 5.9E-08 2E-12 67.0 4.5 39 135-173 9-47 (102)
60 1whw_A Hypothetical protein ri 98.6 5.9E-08 2E-12 66.7 4.3 39 136-174 6-44 (99)
61 1x5o_A RNA binding motif, sing 98.5 7.5E-08 2.5E-12 67.9 4.9 39 136-174 23-61 (114)
62 3ulh_A THO complex subunit 4; 98.5 8.9E-08 3E-12 66.6 5.3 40 135-174 26-65 (107)
63 2cph_A RNA binding motif prote 98.5 8.6E-08 2.9E-12 66.5 5.1 39 135-173 12-50 (107)
64 2m2b_A RNA-binding protein 10; 98.5 4.3E-08 1.5E-12 71.6 3.7 39 136-174 21-61 (131)
65 1x5s_A Cold-inducible RNA-bind 98.5 6E-08 2.1E-12 66.9 4.2 39 136-174 10-48 (102)
66 2d9p_A Polyadenylate-binding p 98.5 6.9E-08 2.4E-12 66.9 4.5 38 136-173 13-50 (103)
67 2cqc_A Arginine/serine-rich sp 98.5 1.1E-07 3.9E-12 64.4 5.5 40 135-174 12-51 (95)
68 2lkz_A RNA-binding protein 5; 98.5 4.6E-08 1.6E-12 69.8 3.7 35 140-174 11-47 (95)
69 2do4_A Squamous cell carcinoma 98.5 2E-07 6.8E-12 64.3 6.8 39 136-174 15-53 (100)
70 2cq1_A PTB-like protein L; RRM 98.5 6.8E-08 2.3E-12 69.7 4.4 38 136-173 13-50 (101)
71 2ytc_A PRE-mRNA-splicing facto 98.5 1.1E-07 3.9E-12 63.4 5.2 39 135-173 9-47 (85)
72 3q2s_C Cleavage and polyadenyl 98.5 6.3E-08 2.2E-12 78.2 4.6 41 134-174 64-106 (229)
73 1wez_A HnRNP H', FTP-3, hetero 98.5 7.8E-08 2.7E-12 68.4 4.5 39 135-174 12-50 (102)
74 2e5h_A Zinc finger CCHC-type a 98.5 9.7E-08 3.3E-12 64.8 4.8 39 136-174 14-52 (94)
75 2cq0_A Eukaryotic translation 98.5 6.5E-08 2.2E-12 67.1 4.0 39 136-174 13-51 (103)
76 3ucg_A Polyadenylate-binding p 98.5 8.4E-08 2.9E-12 64.3 4.4 37 138-174 6-42 (89)
77 1u6f_A Tcubp1, RNA-binding pro 98.5 9E-08 3.1E-12 69.6 4.9 40 135-174 39-78 (139)
78 3n9u_C Cleavage and polyadenyl 98.5 7.1E-08 2.4E-12 73.9 4.5 39 136-174 53-93 (156)
79 2kt5_A RNA and export factor-b 98.5 2.2E-07 7.6E-12 66.7 6.8 39 136-174 33-71 (124)
80 1wi8_A EIF-4B, eukaryotic tran 98.5 7.1E-08 2.4E-12 67.2 4.0 38 136-174 13-50 (104)
81 3beg_B Splicing factor, argini 98.5 3.6E-08 1.2E-12 71.0 2.6 38 136-173 14-51 (115)
82 1iqt_A AUF1, heterogeneous nuc 98.5 3.8E-08 1.3E-12 64.3 2.5 35 140-174 1-35 (75)
83 2dnm_A SRP46 splicing factor; 98.5 8.9E-08 3E-12 66.4 4.4 39 136-174 11-49 (103)
84 1p27_B RNA-binding protein 8A; 98.5 1.3E-07 4.4E-12 65.7 5.1 39 136-174 21-59 (106)
85 2cq4_A RNA binding motif prote 98.5 8.7E-08 3E-12 67.7 4.3 38 137-174 24-61 (114)
86 1wex_A Hypothetical protein (r 98.5 1.1E-07 3.8E-12 68.8 4.9 38 136-173 13-50 (104)
87 2lxi_A RNA-binding protein 10; 98.5 3.1E-08 1.1E-12 68.8 1.9 36 139-174 2-38 (91)
88 2e44_A Insulin-like growth fac 98.5 6.3E-08 2.2E-12 66.1 3.4 40 135-174 12-52 (96)
89 2fy1_A RNA-binding motif prote 98.5 1.4E-07 4.7E-12 68.1 5.2 39 136-174 5-43 (116)
90 2x1f_A MRNA 3'-END-processing 98.5 9.1E-08 3.1E-12 65.7 4.1 37 138-174 2-38 (96)
91 1x4b_A Heterogeneous nuclear r 98.5 1.1E-07 3.7E-12 67.4 4.6 38 137-174 26-63 (116)
92 2dng_A Eukaryotic translation 98.5 1.3E-07 4.6E-12 65.7 4.8 38 136-174 13-50 (103)
93 2hvz_A Splicing factor, argini 98.5 8.7E-08 3E-12 66.2 3.6 34 140-173 2-35 (101)
94 1why_A Hypothetical protein ri 98.5 1.5E-07 5E-12 64.8 4.7 38 136-173 15-52 (97)
95 3ex7_B RNA-binding protein 8A; 98.5 1.4E-07 4.7E-12 67.5 4.7 40 135-174 19-58 (126)
96 1x4g_A Nucleolysin TIAR; struc 98.5 9.8E-08 3.3E-12 67.2 3.9 39 135-173 22-60 (109)
97 2cqp_A RNA-binding protein 12; 98.5 9.3E-08 3.2E-12 65.5 3.7 38 136-173 13-50 (98)
98 2dnq_A RNA-binding protein 4B; 98.5 1.6E-07 5.4E-12 63.8 4.7 38 135-172 5-42 (90)
99 2la4_A Nuclear and cytoplasmic 98.5 1.7E-07 5.8E-12 64.7 4.9 37 136-172 25-61 (101)
100 2xnq_A Nuclear polyadenylated 98.5 1.4E-07 4.9E-12 65.9 4.6 40 132-171 16-56 (97)
101 2ek1_A RNA-binding protein 12; 98.5 8.4E-08 2.9E-12 65.2 3.3 38 136-173 13-50 (95)
102 3lqv_A PRE-mRNA branch site pr 98.5 1.7E-07 5.9E-12 66.1 5.0 39 136-174 6-44 (115)
103 1x4a_A Splicing factor, argini 98.5 3.4E-07 1.1E-11 64.2 6.4 39 135-173 19-57 (109)
104 2dgw_A Probable RNA-binding pr 98.5 3E-07 1E-11 62.4 6.0 39 135-174 7-45 (91)
105 2e5j_A Methenyltetrahydrofolat 98.5 3E-07 1E-11 63.4 6.0 39 134-173 15-53 (97)
106 1p1t_A Cleavage stimulation fa 98.5 1.5E-07 5.2E-12 64.9 4.4 38 137-174 7-44 (104)
107 2jvr_A Nucleolar protein 3; RN 98.5 8.7E-08 3E-12 70.5 3.3 40 133-172 23-63 (111)
108 2dgu_A Heterogeneous nuclear r 98.5 1.5E-07 5.2E-12 65.6 4.4 39 136-174 9-47 (103)
109 1oo0_B CG8781-PA, drosophila Y 98.5 1.2E-07 3.9E-12 66.5 3.8 39 136-174 24-62 (110)
110 2e5i_A Heterogeneous nuclear r 98.5 3.1E-07 1.1E-11 69.4 6.4 37 136-172 23-59 (124)
111 2hgl_A HNRPF protein, heteroge 98.4 2.3E-07 8E-12 70.4 5.5 41 134-174 40-83 (136)
112 2dnl_A Cytoplasmic polyadenyla 98.4 1.2E-07 4.2E-12 67.7 3.7 38 136-174 6-43 (114)
113 1wel_A RNA-binding protein 12; 98.4 1E-07 3.6E-12 68.8 3.4 39 135-173 22-60 (124)
114 2cpe_A RNA-binding protein EWS 98.4 2.4E-07 8.3E-12 65.1 5.1 39 135-173 12-58 (113)
115 2jwn_A Embryonic polyadenylate 98.4 1.2E-07 4.3E-12 67.6 3.5 37 137-173 35-71 (124)
116 2dha_A FLJ20171 protein; RRM d 98.4 2.6E-07 8.8E-12 69.1 5.2 39 136-174 21-63 (123)
117 3r27_A HnRNP L, heterogeneous 98.4 2.3E-07 7.8E-12 68.3 4.7 37 137-173 20-56 (100)
118 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.4 4.8E-07 1.7E-11 65.0 6.3 39 135-173 60-98 (140)
119 2dis_A Unnamed protein product 98.4 1.5E-07 5.1E-12 65.6 3.5 39 135-173 5-45 (109)
120 2ki2_A SS-DNA binding protein 98.4 5.3E-08 1.8E-12 65.8 1.1 35 140-174 3-37 (90)
121 2kxn_B Transformer-2 protein h 98.4 2.4E-07 8.1E-12 68.5 4.5 39 136-174 44-82 (129)
122 3ns6_A Eukaryotic translation 98.4 1.1E-07 3.6E-12 66.8 2.1 38 137-174 5-48 (100)
123 2hgn_A Heterogeneous nuclear r 98.4 2.2E-07 7.5E-12 70.9 4.0 39 135-174 43-81 (139)
124 1h2v_Z 20 kDa nuclear CAP bind 98.4 4.1E-07 1.4E-11 67.6 5.3 39 136-174 37-75 (156)
125 2jvo_A Nucleolar protein 3; nu 98.4 4.2E-07 1.4E-11 65.0 5.1 37 135-171 28-64 (108)
126 2hgm_A HNRPF protein, heteroge 98.4 3.3E-07 1.1E-11 69.1 4.7 40 134-174 38-79 (126)
127 2e5g_A U6 snRNA-specific termi 98.4 4.6E-07 1.6E-11 62.2 5.0 35 137-173 7-41 (94)
128 3zzy_A Polypyrimidine tract-bi 98.4 3.4E-07 1.1E-11 70.3 4.6 41 133-173 23-63 (130)
129 1x4f_A Matrin 3; structural ge 98.4 2.2E-07 7.7E-12 69.2 3.6 38 136-173 23-61 (112)
130 2fc9_A NCL protein; structure 98.4 2.7E-07 9.4E-12 63.7 3.7 38 133-173 10-47 (101)
131 3md3_A Nuclear and cytoplasmic 98.4 6.9E-07 2.4E-11 64.0 5.9 40 134-173 83-122 (166)
132 2cpd_A Apobec-1 stimulating pr 98.3 6.8E-07 2.3E-11 61.6 5.6 38 136-173 13-52 (99)
133 2kvi_A Nuclear polyadenylated 98.3 4.3E-07 1.5E-11 62.7 4.5 36 136-171 8-44 (96)
134 2cpi_A CCR4-NOT transcription 98.3 1.7E-07 5.7E-12 66.7 2.2 38 137-174 14-54 (111)
135 1fjc_A Nucleolin RBD2, protein 98.3 3.3E-07 1.1E-11 62.5 3.4 44 125-168 3-46 (96)
136 2dnn_A RNA-binding protein 12; 98.3 4.8E-07 1.6E-11 66.0 4.3 38 136-174 14-51 (109)
137 1whx_A Hypothetical protein ri 98.3 3.5E-07 1.2E-11 65.6 2.8 36 137-172 9-44 (111)
138 2hzc_A Splicing factor U2AF 65 98.3 4.8E-07 1.6E-11 60.3 3.3 38 136-173 4-52 (87)
139 1rk8_A CG8781-PA, CG8781-PA pr 98.3 7.5E-07 2.6E-11 67.3 4.7 37 137-173 71-107 (165)
140 2lea_A Serine/arginine-rich sp 98.3 4.6E-07 1.6E-11 67.3 3.5 39 136-174 45-83 (135)
141 1wf1_A RNA-binding protein RAL 98.3 1.4E-06 4.9E-11 61.2 5.8 34 137-170 26-60 (110)
142 2cqh_A IGF-II mRNA-binding pro 98.3 7.6E-07 2.6E-11 60.6 4.1 35 136-170 6-41 (93)
143 2wbr_A GW182, gawky, LD47780P; 98.3 5.2E-07 1.8E-11 66.3 3.5 37 137-173 6-42 (89)
144 2qfj_A FBP-interacting repress 98.3 6.7E-07 2.3E-11 67.3 4.2 38 137-174 27-64 (216)
145 4f02_A Polyadenylate-binding p 98.3 7.7E-07 2.6E-11 69.0 4.6 38 137-174 102-139 (213)
146 2f3j_A RNA and export factor b 98.3 1.4E-06 4.8E-11 67.8 6.1 38 137-174 87-124 (177)
147 1nu4_A U1A RNA binding domain; 98.2 8.5E-07 2.9E-11 60.4 4.0 36 136-171 6-45 (97)
148 2lcw_A RNA-binding protein FUS 97.6 1.4E-07 4.8E-12 67.0 0.0 39 135-173 4-50 (116)
149 1l3k_A Heterogeneous nuclear r 98.2 1.2E-06 3.9E-11 65.1 4.9 39 136-174 102-140 (196)
150 1wg1_A KIAA1579 protein, homol 98.2 1.1E-06 3.6E-11 59.8 4.3 35 136-171 3-37 (88)
151 3smz_A Protein raver-1, ribonu 98.2 5.9E-07 2E-11 71.3 3.4 43 132-174 89-131 (284)
152 2krb_A Eukaryotic translation 98.2 6.6E-07 2.3E-11 59.8 3.1 33 139-171 2-40 (81)
153 3sde_A Paraspeckle component 1 98.2 6.9E-07 2.4E-11 71.5 3.6 43 132-174 90-132 (261)
154 3egn_A RNA-binding protein 40; 98.2 2.7E-07 9.2E-12 67.7 1.0 33 136-168 43-75 (143)
155 1sjr_A Polypyrimidine tract-bi 98.2 8.6E-07 2.9E-11 70.7 3.9 39 135-173 43-81 (164)
156 3nmr_A Cugbp ELAV-like family 98.2 1.3E-06 4.6E-11 63.2 4.4 38 137-174 94-131 (175)
157 2cq2_A Hypothetical protein LO 98.2 5.5E-07 1.9E-11 67.7 2.3 37 137-173 24-62 (114)
158 2nlw_A Eukaryotic translation 98.2 1.4E-06 4.9E-11 61.2 4.1 36 136-171 13-54 (105)
159 2g4b_A Splicing factor U2AF 65 98.2 3.2E-06 1.1E-10 61.5 5.8 39 136-174 92-130 (172)
160 2cpx_A Hypothetical protein FL 98.2 4E-07 1.4E-11 64.0 0.9 34 136-169 23-56 (115)
161 2qfj_A FBP-interacting repress 98.1 2.3E-06 8E-11 64.3 5.0 39 136-174 123-161 (216)
162 2voo_A Lupus LA protein; RNA-b 98.1 2.4E-06 8.2E-11 67.1 4.8 37 138-174 109-145 (193)
163 2cjk_A Nuclear polyadenylated 98.1 1.2E-06 4E-11 63.5 2.8 38 137-174 86-123 (167)
164 2yh0_A Splicing factor U2AF 65 98.1 2.9E-06 9.9E-11 63.0 4.9 39 136-174 112-150 (198)
165 2adc_A Polypyrimidine tract-bi 98.1 1.9E-06 6.5E-11 67.5 4.0 39 136-174 32-71 (229)
166 1x5p_A Negative elongation fac 98.1 6.2E-06 2.1E-10 56.7 5.8 35 135-171 12-46 (97)
167 3pgw_A U1-A; protein-RNA compl 98.1 4.2E-06 1.4E-10 66.3 5.5 40 135-174 204-243 (282)
168 1b7f_A Protein (SXL-lethal pro 98.1 4.3E-06 1.5E-10 60.3 5.1 39 136-174 87-125 (168)
169 1fxl_A Paraneoplastic encephal 98.1 4.2E-06 1.4E-10 59.9 4.6 38 137-174 87-124 (167)
170 2ghp_A U4/U6 snRNA-associated 98.0 2.6E-06 8.8E-11 67.9 3.4 41 134-174 37-77 (292)
171 3sde_A Paraspeckle component 1 98.0 3.8E-06 1.3E-10 67.2 4.3 38 136-173 20-57 (261)
172 2a3j_A U1 small nuclear ribonu 98.0 4.6E-06 1.6E-10 62.4 4.4 37 136-172 27-67 (127)
173 3tyt_A Heterogeneous nuclear r 98.0 2.8E-06 9.5E-11 67.0 3.0 37 137-173 122-160 (205)
174 2fc8_A NCL protein; structure 98.0 8.3E-06 2.9E-10 56.1 4.7 38 134-174 11-48 (102)
175 3u1l_A PRE-mRNA-splicing facto 97.8 9.4E-06 3.2E-10 67.7 3.6 39 135-173 131-178 (240)
176 2ghp_A U4/U6 snRNA-associated 97.8 7.8E-06 2.7E-10 65.1 2.9 38 137-174 116-154 (292)
177 2bz2_A Negative elongation fac 97.8 2.1E-05 7.2E-10 57.6 4.6 34 136-171 37-70 (121)
178 1qm9_A Polypyrimidine tract-bi 97.8 3.6E-05 1.2E-09 57.8 5.9 38 136-173 118-156 (198)
179 3smz_A Protein raver-1, ribonu 97.7 3.9E-05 1.3E-09 60.8 5.1 39 136-174 182-221 (284)
180 2adc_A Polypyrimidine tract-bi 97.6 5.8E-05 2E-09 59.0 5.1 36 137-172 150-186 (229)
181 1fje_B Nucleolin RBD12, protei 97.5 7.3E-05 2.5E-09 54.7 3.8 33 136-168 97-129 (175)
182 1owx_A Lupus LA protein, SS-B, 97.4 8.8E-05 3E-09 56.6 3.0 38 137-174 17-55 (121)
183 2diu_A KIAA0430 protein; struc 97.2 0.00024 8.3E-09 53.0 4.0 33 136-168 7-44 (96)
184 2pe8_A Splicing factor 45; RRM 96.2 0.0039 1.3E-07 44.8 3.7 36 139-174 9-49 (105)
185 2d9o_A DNAJ (HSP40) homolog, s 96.0 0.011 3.7E-07 42.6 5.4 24 148-171 27-50 (100)
186 1jmt_A Splicing factor U2AF 35 96.0 0.00093 3.2E-08 47.8 -0.5 33 142-174 19-63 (104)
187 2dit_A HIV TAT specific factor 95.4 0.02 7E-07 40.3 4.6 37 136-173 13-60 (112)
188 2dnr_A Synaptojanin-1; RRM dom 93.0 0.074 2.5E-06 39.1 3.4 39 136-174 5-51 (91)
189 3ue2_A Poly(U)-binding-splicin 92.5 0.1 3.6E-06 38.3 3.6 23 152-174 39-61 (118)
190 3v4m_A Splicing factor U2AF 65 90.7 0.11 3.9E-06 36.9 2.1 24 151-174 28-51 (105)
191 1ufw_A Synaptojanin 2; RNP dom 89.3 0.14 4.7E-06 38.1 1.5 39 136-174 13-60 (95)
192 3s6e_A RNA-binding protein 39; 86.9 0.38 1.3E-05 35.1 2.7 21 153-173 32-52 (114)
193 4f25_A Polyadenylate-binding p 80.5 0.36 1.2E-05 33.9 0.2 19 136-154 95-113 (115)
194 3dxb_A Thioredoxin N-terminall 76.8 1.3 4.3E-05 34.1 2.3 23 151-173 142-164 (222)
195 1whv_A Poly(A)-specific ribonu 67.5 5.6 0.00019 29.9 3.8 31 136-166 13-43 (100)
196 3ctr_A Poly(A)-specific ribonu 55.2 5.3 0.00018 30.0 1.8 25 141-165 8-32 (101)
197 3fut_A Dimethyladenosine trans 35.2 28 0.00097 28.6 3.3 34 138-172 110-143 (271)
198 3pq1_A Poly(A) RNA polymerase; 32.8 21 0.00072 32.4 2.4 31 138-169 53-83 (464)
199 2dhx_A Poly (ADP-ribose) polym 29.5 80 0.0027 23.6 4.7 25 137-161 7-31 (104)
200 1wey_A Calcipressin 1; structu 29.4 32 0.0011 25.7 2.4 28 138-165 5-37 (104)
201 3tqs_A Ribosomal RNA small sub 29.1 44 0.0015 27.0 3.4 34 138-172 97-130 (255)
202 2l9w_A U4/U6 snRNA-associated- 27.8 63 0.0021 24.9 3.9 38 137-174 20-62 (117)
203 3uzu_A Ribosomal RNA small sub 25.4 24 0.00083 28.9 1.3 33 140-172 116-148 (279)
204 1i4w_A Mitochondrial replicati 22.2 32 0.0011 29.7 1.5 21 141-161 145-165 (353)
205 3ftd_A Dimethyladenosine trans 21.9 46 0.0016 26.6 2.2 34 138-172 96-129 (249)
No 1
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.06 E-value=3.8e-11 Score=83.28 Aligned_cols=51 Identities=22% Similarity=0.212 Sum_probs=47.2
Q ss_pred CCCcccCCCCCCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 122 AGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 122 ~G~~WeDptL~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
|++.|++|+..+.+....+||||||++++|+++|+++|++||.|.. ++++|
T Consensus 1 G~~~~~~p~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~ 51 (101)
T 1fj7_A 1 GSHMLEDPVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVD 51 (101)
T ss_dssp CCCCCCCSCCSTTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCE
T ss_pred CCCcCCCCCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEec
Confidence 6789999999999999999999999999999999999999999888 66665
No 2
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.88 E-value=3.5e-09 Score=73.24 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=44.5
Q ss_pred ccCCCCCCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcce--------eEEeecC
Q 030532 126 WEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNM--------AKVSFCF 174 (175)
Q Consensus 126 WeDptL~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~--------AKVV~D~ 174 (175)
|.++.+..++....+||||||++++|+++|+++|++||.|.. ++|++|.
T Consensus 1 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~ 57 (99)
T 2la6_A 1 MGHHHHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDR 57 (99)
T ss_dssp CCSSCSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECT
T ss_pred CCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecC
Confidence 567777778889999999999999999999999999999999 9999873
No 3
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.86 E-value=5.7e-09 Score=74.60 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=52.0
Q ss_pred cccccCCCcccCCCCCCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 117 IPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 117 ~~R~a~G~~WeDptL~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
+.-+-.+..|...++...++...+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~ 62 (108)
T 2jrs_A 5 HHHHSHMAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDS 62 (108)
T ss_dssp CCCCSCSSSSSCCSSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEET
T ss_pred chhhhhhccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence 3445567889999999999999999999999999999999999999999999999873
No 4
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.80 E-value=3.6e-09 Score=75.99 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=34.9
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
...+||||||++++||++|+++|++||.|.+++|+.|.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~ 41 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE 41 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC
Confidence 35689999999999999999999999999999999884
No 5
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.79 E-value=3.4e-09 Score=73.62 Aligned_cols=39 Identities=10% Similarity=0.212 Sum_probs=34.7
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
.....+||||||++++||++|+++|++||.|.+++|+.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~ 46 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP 46 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC
Confidence 456889999999999999999999999999999999876
No 6
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.77 E-value=5.1e-09 Score=74.79 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=34.6
Q ss_pred ccCCCCCCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 126 WEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 126 WeDptL~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
|..+.+.+.+.+..+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 13 ~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~ 61 (109)
T 2rs2_A 13 GLVPRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP 61 (109)
T ss_dssp -------------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCT
T ss_pred CCCccccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECC
Confidence 4455566777788999999999999999999999999999999999874
No 7
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.75 E-value=7.2e-09 Score=73.41 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=35.1
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
...+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~ 55 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDK 55 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecC
Confidence 34589999999999999999999999999999999874
No 8
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=8.2e-09 Score=76.53 Aligned_cols=39 Identities=8% Similarity=-0.117 Sum_probs=36.0
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
+....+||||||++++||++|+++|++||.|.+++|+.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~ 51 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG 51 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC
Confidence 456779999999999999999999999999999999876
No 9
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.71 E-value=1.3e-08 Score=71.95 Aligned_cols=39 Identities=13% Similarity=-0.004 Sum_probs=36.3
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
....++||||||++++|+++|+++|++||.|..++|+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~ 50 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 50 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC
Confidence 456899999999999999999999999999999999875
No 10
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.69 E-value=2.4e-08 Score=69.29 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=37.5
Q ss_pred CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.+....+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 51 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP 51 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 34567899999999999999999999999999999999874
No 11
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.69 E-value=2.2e-08 Score=67.32 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=36.8
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
+.+..+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 47 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDP 47 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecC
Confidence 3567899999999999999999999999999999999874
No 12
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=1.3e-08 Score=68.93 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=35.1
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
....+||||||++++|+++|+++|++||.|.+++|+.|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 40 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP 40 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC
Confidence 35679999999999999999999999999999999876
No 13
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.68 E-value=1.3e-08 Score=69.61 Aligned_cols=36 Identities=19% Similarity=0.113 Sum_probs=32.7
Q ss_pred ceeeecCCCCCCCHHHHHHHhhcCC--CcceeEEeecC
Q 030532 139 YRLFCGDLGNEVNDDVLSKAFSRFP--SFNMAKVSFCF 174 (175)
Q Consensus 139 frIFVGNLs~dVTDe~L~~aFskYG--SV~~AKVV~D~ 174 (175)
++||||||++++|+++|+++|++|| .|.+++|+.|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~ 39 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENR 39 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecC
Confidence 5799999999999999999999999 99999999884
No 14
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=2.2e-08 Score=69.37 Aligned_cols=39 Identities=36% Similarity=0.603 Sum_probs=36.5
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhc-CCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSR-FPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFsk-YGSV~~AKVV~D~ 174 (175)
....+||||||++++|+++|+++|++ ||.|.+++|+.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~ 46 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ 46 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC
Confidence 46789999999999999999999999 9999999999874
No 15
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.67 E-value=2.3e-08 Score=72.41 Aligned_cols=39 Identities=8% Similarity=0.098 Sum_probs=36.1
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+||||||++++||++|+++|++||.|.+++|++|.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~ 42 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHP 42 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECC
Confidence 345689999999999999999999999999999999985
No 16
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.67 E-value=2.1e-08 Score=66.52 Aligned_cols=36 Identities=39% Similarity=0.743 Sum_probs=34.2
Q ss_pred ceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 139 frIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
++||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~ 37 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDM 37 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcC
Confidence 689999999999999999999999999999999873
No 17
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.66 E-value=2e-08 Score=67.11 Aligned_cols=39 Identities=26% Similarity=0.485 Sum_probs=35.2
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.++.+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 42 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDM 42 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC
Confidence 467899999999999999999999999999999999873
No 18
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.65 E-value=1.6e-08 Score=70.06 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=37.4
Q ss_pred CCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 133 Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
+.+....+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 45 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR 45 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC
Confidence 334456799999999999999999999999999999999874
No 19
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=3e-08 Score=70.86 Aligned_cols=41 Identities=7% Similarity=-0.071 Sum_probs=37.6
Q ss_pred CCCCCceeeecCCCCCCCHHHHHHHhhcCCCc-ceeEEeecC
Q 030532 134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSF-NMAKVSFCF 174 (175)
Q Consensus 134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV-~~AKVV~D~ 174 (175)
.+.+..+||||||++++|+++|+++|+.||.| .+++|++|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~ 52 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN 52 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC
Confidence 45678899999999999999999999999999 899999885
No 20
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=2.9e-08 Score=71.28 Aligned_cols=39 Identities=3% Similarity=-0.007 Sum_probs=36.2
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+||||||++++|+++|.++|++||.|.+++|+.|.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~ 47 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL 47 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECC
Confidence 356789999999999999999999999999999999885
No 21
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=4e-08 Score=68.12 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=37.3
Q ss_pred CCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 133 Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
+.+....+||||||++++|+++|+++|++||.|.+++|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE 50 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECC
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEec
Confidence 34457789999999999999999999999999999999987
No 22
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.62 E-value=2.8e-08 Score=69.01 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=37.3
Q ss_pred CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.+....+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 49 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDR 49 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC
Confidence 34577899999999999999999999999999999998874
No 23
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.61 E-value=3.8e-08 Score=69.66 Aligned_cols=39 Identities=28% Similarity=0.221 Sum_probs=36.3
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.+..+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 61 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDK 61 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 456799999999999999999999999999999999875
No 24
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=3.8e-08 Score=67.78 Aligned_cols=39 Identities=13% Similarity=0.319 Sum_probs=36.1
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 46 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDA 46 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC
Confidence 467799999999999999999999999999999999873
No 25
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=3.8e-08 Score=68.46 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=36.9
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
+.+..+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~ 52 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDK 52 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC
Confidence 4567899999999999999999999999999999999873
No 26
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=4.9e-08 Score=67.03 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=36.1
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcc-eeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFN-MAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~-~AKVV~D~ 174 (175)
....+||||||+.++|+++|+++|++||.|. +++|+.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~ 46 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNR 46 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecC
Confidence 4567899999999999999999999999999 99999884
No 27
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.61 E-value=4.4e-08 Score=67.15 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=35.9
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 41 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKK 41 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence 456789999999999999999999999999999999864
No 28
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=5.9e-08 Score=68.18 Aligned_cols=40 Identities=18% Similarity=0.038 Sum_probs=36.8
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.....+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~ 51 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK 51 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 3567899999999999999999999999999999999874
No 29
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.60 E-value=4.7e-08 Score=68.18 Aligned_cols=41 Identities=12% Similarity=0.245 Sum_probs=36.9
Q ss_pred CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
......+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 51 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHP 51 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence 34567799999999999999999999999999999999873
No 30
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=3.2e-08 Score=66.26 Aligned_cols=39 Identities=15% Similarity=0.104 Sum_probs=36.1
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
+...+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~ 41 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDK 41 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence 466799999999999999999999999999999999873
No 31
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=6.1e-08 Score=67.19 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=37.2
Q ss_pred CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
-+....+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~ 51 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 51 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence 34567899999999999999999999999999999999873
No 32
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.60 E-value=3.7e-08 Score=72.84 Aligned_cols=42 Identities=14% Similarity=0.073 Sum_probs=37.8
Q ss_pred CCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 133 Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
+......+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~ 106 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR 106 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCS
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC
Confidence 344567899999999999999999999999999999999884
No 33
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.60 E-value=4.5e-08 Score=66.55 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=36.3
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+||||||++++++++|+++|++||.|.+++|+.|.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~ 52 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR 52 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC
Confidence 467899999999999999999999999999999999874
No 34
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.59 E-value=4.6e-08 Score=65.28 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=35.1
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
...+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 40 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER 40 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCC
Confidence 45789999999999999999999999999999998874
No 35
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.59 E-value=4.2e-08 Score=65.27 Aligned_cols=38 Identities=29% Similarity=0.471 Sum_probs=35.7
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
.+..+||||||+.++++++|+++|++||.|.+++|+.|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~ 42 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD 42 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEEC
Confidence 46789999999999999999999999999999999887
No 36
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=5.2e-08 Score=67.53 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=36.2
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.+..+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 51 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDL 51 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECS
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecC
Confidence 456789999999999999999999999999999999874
No 37
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.58 E-value=9.6e-08 Score=65.95 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=35.5
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
..+..+||||||+.++|+++|+++|++||.|.+++|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~ 50 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD 50 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC
Confidence 356789999999999999999999999999999998765
No 38
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.58 E-value=4.2e-08 Score=66.73 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=36.0
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
+.+..+||||||++++|+++|+++|++||.|.+++|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~ 44 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD 44 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC
Confidence 457789999999999999999999999999999999866
No 39
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=7.2e-08 Score=68.58 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=37.0
Q ss_pred CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.+.+..+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~ 65 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 65 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC
Confidence 34567799999999999999999999999999999998873
No 40
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.58 E-value=6.5e-08 Score=65.41 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=35.3
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
....+||||||+.++|+++|+++|++||.|..++|+.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~ 43 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME 43 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc
Confidence 46789999999999999999999999999999999875
No 41
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=4.9e-08 Score=67.71 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=36.3
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 51 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDR 51 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence 467899999999999999999999999999999998874
No 42
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.58 E-value=3.2e-08 Score=64.84 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=33.0
Q ss_pred eeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 35 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDK 35 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecC
Confidence 69999999999999999999999999999998874
No 43
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.57 E-value=5.3e-08 Score=72.03 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=37.9
Q ss_pred CCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 132 AEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 132 ~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
........+||||||++++|+++|+++|++||.|.+++|+.|
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 108 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN 108 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC
Confidence 344567789999999999999999999999999999999887
No 44
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=3.7e-08 Score=68.29 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=36.0
Q ss_pred CCCceeeecCCCCCCCHHHHH----HHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLS----KAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~----~aFskYGSV~~AKVV~D~ 174 (175)
.+..+||||||++++++++|+ ++|++||.|.+++|+.|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~ 49 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHT 49 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCC
Confidence 356799999999999999999 999999999999999874
No 45
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=6.8e-08 Score=65.66 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=36.1
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
+...+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~ 41 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDS 41 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecC
Confidence 456799999999999999999999999999999999874
No 46
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.57 E-value=4.6e-08 Score=69.34 Aligned_cols=39 Identities=28% Similarity=0.244 Sum_probs=36.1
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.+..+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 76 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDK 76 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC
Confidence 467899999999999999999999999999999999873
No 47
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=5.8e-08 Score=73.09 Aligned_cols=37 Identities=8% Similarity=-0.092 Sum_probs=34.5
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
...+||||||++++||++|+++|++||.|.+++|+.|
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~ 66 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG 66 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC
Confidence 4568999999999999999999999999999999876
No 48
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=5.4e-08 Score=66.29 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=35.6
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCccee-EEeec
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA-KVSFC 173 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~A-KVV~D 173 (175)
....+||||||+.++|+++|+++|++||.|.++ +|+.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~ 41 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRD 41 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEc
Confidence 467799999999999999999999999999999 99987
No 49
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.57 E-value=2.6e-08 Score=72.62 Aligned_cols=38 Identities=8% Similarity=-0.087 Sum_probs=35.2
Q ss_pred CCceeeecCCCC-CCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 137 NDYRLFCGDLGN-EVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 137 ndfrIFVGNLs~-dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
...+||||||++ ++||++|+++|++||.|.+++|+.|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k 52 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI 52 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC
Confidence 567899999999 99999999999999999999998763
No 50
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.57 E-value=5.9e-08 Score=68.48 Aligned_cols=39 Identities=28% Similarity=0.509 Sum_probs=36.5
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.+..+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 51 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDM 51 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence 467899999999999999999999999999999999874
No 51
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.56 E-value=4.8e-08 Score=68.79 Aligned_cols=41 Identities=15% Similarity=0.039 Sum_probs=36.1
Q ss_pred CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcce-eEEeecC
Q 030532 134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNM-AKVSFCF 174 (175)
Q Consensus 134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~-AKVV~D~ 174 (175)
...+..+||||||++++|+++|+++|+.||.|.+ ++|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~ 52 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDF 52 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECC
Confidence 3456789999999999999999999999999987 7787774
No 52
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.56 E-value=4.2e-08 Score=64.17 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=33.2
Q ss_pred eeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~ 36 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP 36 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCC
Confidence 69999999999999999999999999999998874
No 53
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.56 E-value=1e-07 Score=84.16 Aligned_cols=38 Identities=11% Similarity=0.244 Sum_probs=35.2
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
...+||||||+++||+++|.++|++||.|..++|++|.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~ 138 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSK 138 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccC
Confidence 34689999999999999999999999999999999873
No 54
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.56 E-value=6.3e-08 Score=68.61 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=36.8
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
+....+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 53 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR 53 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcC
Confidence 4567899999999999999999999999999999999873
No 55
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.56 E-value=2e-08 Score=70.12 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=33.4
Q ss_pred CCCCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 130 TLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 130 tL~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....-.....+||||||++++|+++|+++|++|| |.+++|+.|.
T Consensus 11 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~ 54 (100)
T 2j76_E 11 RSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREP 54 (100)
T ss_dssp ---------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCT
T ss_pred CCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecC
Confidence 3334455788999999999999999999999999 9999998874
No 56
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.56 E-value=1e-07 Score=69.01 Aligned_cols=42 Identities=7% Similarity=-0.075 Sum_probs=37.6
Q ss_pred CCCCCCceeeecCCCCCCCHHHHHHHhhcCCC---cceeEEeecC
Q 030532 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPS---FNMAKVSFCF 174 (175)
Q Consensus 133 Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGS---V~~AKVV~D~ 174 (175)
..+.+..+||||||++++|+++|+++|+.||. |.+++|++|.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~ 56 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR 56 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC
Confidence 33457789999999999999999999999999 8999999874
No 57
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.56 E-value=6.8e-08 Score=65.90 Aligned_cols=39 Identities=10% Similarity=0.204 Sum_probs=35.6
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
+....+||||||++++|+++|+++|++||.|.+++|+.|
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~ 45 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 45 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC
Confidence 346789999999999999999999999999999998865
No 58
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.56 E-value=4.9e-08 Score=69.08 Aligned_cols=42 Identities=12% Similarity=-0.055 Sum_probs=37.2
Q ss_pred CCCCCCceeeecCCCCCCCHHHHHHHhhcCCC---cceeEEeecC
Q 030532 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPS---FNMAKVSFCF 174 (175)
Q Consensus 133 Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGS---V~~AKVV~D~ 174 (175)
+.....++||||||++++|+++|+++|+.||. |.+++|++|.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~ 50 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR 50 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCT
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECC
Confidence 34457889999999999999999999999887 8999999874
No 59
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.56 E-value=5.9e-08 Score=66.98 Aligned_cols=39 Identities=28% Similarity=0.462 Sum_probs=36.3
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
..+..+||||||++++|+++|+++|++||.|.+++|+.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~ 47 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD 47 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEec
Confidence 456789999999999999999999999999999999887
No 60
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.55 E-value=5.9e-08 Score=66.65 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=36.1
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.+..+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 44 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDS 44 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC
Confidence 456799999999999999999999999999999998874
No 61
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=7.5e-08 Score=67.85 Aligned_cols=39 Identities=10% Similarity=0.168 Sum_probs=36.2
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.+..+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 61 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS 61 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC
Confidence 456799999999999999999999999999999999874
No 62
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.55 E-value=8.9e-08 Score=66.58 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=36.8
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.....+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 65 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR 65 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 3567899999999999999999999999999999999874
No 63
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.55 E-value=8.6e-08 Score=66.46 Aligned_cols=39 Identities=10% Similarity=0.250 Sum_probs=36.3
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
+....+||||||++++|+++|+++|++||.|.+++|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKK 50 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecC
Confidence 456789999999999999999999999999999999887
No 64
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.54 E-value=4.3e-08 Score=71.62 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=35.4
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcce--eEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNM--AKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~--AKVV~D~ 174 (175)
....+||||||++++||++|+++|++||.|.. ++|++|.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~ 61 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDK 61 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcC
Confidence 45568999999999999999999999999966 9999986
No 65
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=6e-08 Score=66.91 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=36.3
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.+..+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~ 48 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR 48 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC
Confidence 467899999999999999999999999999999999874
No 66
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=6.9e-08 Score=66.93 Aligned_cols=38 Identities=32% Similarity=0.454 Sum_probs=35.5
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
.+..+||||||++++|+++|+++|++||.|.+++|+.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME 50 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC
Confidence 46779999999999999999999999999999999876
No 67
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=1.1e-07 Score=64.35 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=36.6
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
+....+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~ 51 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ 51 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcC
Confidence 4567889999999999999999999999999999998874
No 68
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.54 E-value=4.6e-08 Score=69.78 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=32.3
Q ss_pred eeeecCCCCCCCHHHHHHHhhcCCC--cceeEEeecC
Q 030532 140 RLFCGDLGNEVNDDVLSKAFSRFPS--FNMAKVSFCF 174 (175)
Q Consensus 140 rIFVGNLs~dVTDe~L~~aFskYGS--V~~AKVV~D~ 174 (175)
+||||||++++|+++|+++|++||. +.+++|+.|.
T Consensus 11 tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~ 47 (95)
T 2lkz_A 11 TIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDK 47 (95)
T ss_dssp EEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCS
T ss_pred EEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecC
Confidence 6999999999999999999999994 6789999884
No 69
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=2e-07 Score=64.27 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=36.1
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.+..+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 53 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR 53 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC
Confidence 456789999999999999999999999999999999874
No 70
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=6.8e-08 Score=69.74 Aligned_cols=38 Identities=13% Similarity=-0.045 Sum_probs=34.5
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
....+||||||++++||++|+++|++||.|.+++|+.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~ 50 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG 50 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC
Confidence 34568999999999999999999999999999988765
No 71
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.53 E-value=1.1e-07 Score=63.37 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=35.5
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
+....+||||||+.++|+++|+++|++||.|.+++|+.+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~ 47 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR 47 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC
Confidence 456789999999999999999999999999999998764
No 72
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.53 E-value=6.3e-08 Score=78.17 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=34.6
Q ss_pred CCCCCceeeecCCCCCCCHHHHHHHhhcCC--CcceeEEeecC
Q 030532 134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFP--SFNMAKVSFCF 174 (175)
Q Consensus 134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYG--SV~~AKVV~D~ 174 (175)
.+....+||||||++++||++|+++|++|| .|.+++|++|.
T Consensus 64 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~ 106 (229)
T 3q2s_C 64 YTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENR 106 (229)
T ss_dssp -----CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECT
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecC
Confidence 344677999999999999999999999999 99999999984
No 73
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=7.8e-08 Score=68.40 Aligned_cols=39 Identities=8% Similarity=0.008 Sum_probs=35.0
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
+....+||||||++++|+++|+++|+.|| +.+++|++|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~ 50 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP 50 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC
Confidence 35678999999999999999999999999 5599999885
No 74
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=9.7e-08 Score=64.79 Aligned_cols=39 Identities=10% Similarity=0.170 Sum_probs=36.1
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+||||||+.++++++|+++|++||.|.+++|+.|.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~ 52 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDK 52 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC
Confidence 467799999999999999999999999999999998873
No 75
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=6.5e-08 Score=67.05 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=36.1
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~ 51 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDK 51 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecC
Confidence 457889999999999999999999999999999999873
No 76
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.52 E-value=8.4e-08 Score=64.30 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=34.6
Q ss_pred CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
..+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 42 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDK 42 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecC
Confidence 4589999999999999999999999999999999874
No 77
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.52 E-value=9e-08 Score=69.56 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=36.6
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
+....+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~ 78 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDR 78 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence 3456789999999999999999999999999999999874
No 78
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.52 E-value=7.1e-08 Score=73.93 Aligned_cols=39 Identities=10% Similarity=0.051 Sum_probs=34.6
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCC--CcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFP--SFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYG--SV~~AKVV~D~ 174 (175)
....+||||||++++||++|+++|++|| .|.+++|+.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~ 93 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENR 93 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecC
Confidence 3568999999999999999999999999 99999999884
No 79
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.52 E-value=2.2e-07 Score=66.66 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=36.0
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+||||||+.++++++|+++|++||.|.+++|+.|.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~ 71 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR 71 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC
Confidence 456799999999999999999999999999999999874
No 80
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=7.1e-08 Score=67.17 Aligned_cols=38 Identities=16% Similarity=0.319 Sum_probs=35.0
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+||||||++++|+++|+++|++|| |.+++|+.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~ 50 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREP 50 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCS
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCC
Confidence 4568999999999999999999999999 9999999874
No 81
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.52 E-value=3.6e-08 Score=70.95 Aligned_cols=38 Identities=13% Similarity=0.003 Sum_probs=33.6
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
...++||||||++++|+++|.++|++||.|..++|+.|
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~ 51 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 51 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC
Confidence 35789999999999999999999999999999999875
No 82
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.51 E-value=3.8e-08 Score=64.32 Aligned_cols=35 Identities=14% Similarity=0.376 Sum_probs=32.8
Q ss_pred eeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 35 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 35 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence 69999999999999999999999999999988763
No 83
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.51 E-value=8.9e-08 Score=66.36 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=35.8
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~ 49 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREP 49 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC
Confidence 356799999999999999999999999999999998873
No 84
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=1.3e-07 Score=65.66 Aligned_cols=39 Identities=10% Similarity=0.270 Sum_probs=35.8
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~ 59 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDR 59 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecC
Confidence 456789999999999999999999999999999999873
No 85
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=8.7e-08 Score=67.70 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=35.2
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
...+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 61 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDR 61 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecC
Confidence 45689999999999999999999999999999999774
No 86
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.50 E-value=1.1e-07 Score=68.80 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=34.4
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
....+||||||++++||++|+++|++||.|.+++|+.+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~ 50 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF 50 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC
Confidence 35678999999999999999999999999999988754
No 87
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.50 E-value=3.1e-08 Score=68.79 Aligned_cols=36 Identities=6% Similarity=-0.044 Sum_probs=33.4
Q ss_pred ceeeecCCCCCCCHHHHHHHhhcCC-CcceeEEeecC
Q 030532 139 YRLFCGDLGNEVNDDVLSKAFSRFP-SFNMAKVSFCF 174 (175)
Q Consensus 139 frIFVGNLs~dVTDe~L~~aFskYG-SV~~AKVV~D~ 174 (175)
-.||||||++++||++|+++|++|| .|.+++|+.|.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~ 38 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNK 38 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecC
Confidence 3699999999999999999999999 79999999874
No 88
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=6.3e-08 Score=66.15 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=35.6
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeE-EeecC
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAK-VSFCF 174 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AK-VV~D~ 174 (175)
.....+||||||++++|+++|+++|++||.|.+++ |+.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~ 52 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS 52 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC
Confidence 34578999999999999999999999999999995 87764
No 89
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.49 E-value=1.4e-07 Score=68.14 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=36.1
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.+..+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 43 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR 43 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC
Confidence 456799999999999999999999999999999999874
No 90
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.49 E-value=9.1e-08 Score=65.73 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=34.4
Q ss_pred CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
..+||||||+.++++++|+++|++||.|.+++|+.|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 38 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDP 38 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCT
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCC
Confidence 4589999999999999999999999999999998873
No 91
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=1.1e-07 Score=67.39 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=35.2
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
+..+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~ 63 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDP 63 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC
Confidence 35689999999999999999999999999999999873
No 92
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.49 E-value=1.3e-07 Score=65.65 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=34.9
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+||||||++++|+++|+++|++|| |.+++|+.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~ 50 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDK 50 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecC
Confidence 4578999999999999999999999996 9999999874
No 93
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.48 E-value=8.7e-08 Score=66.19 Aligned_cols=34 Identities=21% Similarity=0.452 Sum_probs=32.7
Q ss_pred eeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
+||||||+.++|+++|+++|++||.|.+++|+.|
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 35 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN 35 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC
Confidence 7999999999999999999999999999999876
No 94
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.47 E-value=1.5e-07 Score=64.79 Aligned_cols=38 Identities=26% Similarity=0.388 Sum_probs=34.6
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
....+||||||+.++|+++|+++|++||.|.+++|+.+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~ 52 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG 52 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC
Confidence 35678999999999999999999999999999988765
No 95
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.47 E-value=1.4e-07 Score=67.53 Aligned_cols=40 Identities=10% Similarity=0.267 Sum_probs=36.4
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.....+||||||++++|+++|.++|++||.|.+++|+.|.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 58 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDR 58 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence 3457799999999999999999999999999999998874
No 96
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.47 E-value=9.8e-08 Score=67.15 Aligned_cols=39 Identities=18% Similarity=0.441 Sum_probs=35.8
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
+....+||||||+.++|+++|+++|++||.|.+++|+.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 60 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE 60 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC
Confidence 456789999999999999999999999999999999875
No 97
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.47 E-value=9.3e-08 Score=65.52 Aligned_cols=38 Identities=8% Similarity=-0.051 Sum_probs=35.0
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
....+||||||++++|+++|+++|++||.|..++++.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~ 50 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY 50 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEE
Confidence 46789999999999999999999999999998888876
No 98
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=1.6e-07 Score=63.83 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=34.4
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEee
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSF 172 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~ 172 (175)
+....+||||||+.++|+++|+++|++||.|.+++|+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~ 42 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK 42 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEET
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC
Confidence 35678999999999999999999999999999988763
No 99
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.47 E-value=1.7e-07 Score=64.71 Aligned_cols=37 Identities=14% Similarity=0.036 Sum_probs=33.7
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEee
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSF 172 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~ 172 (175)
....+||||||+.++|+++|+++|++||.|.+++|+.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~ 61 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP 61 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec
Confidence 4567999999999999999999999999999998863
No 100
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.47 E-value=1.4e-07 Score=65.93 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=34.0
Q ss_pred CCCCCCCceeeecCCCC-CCCHHHHHHHhhcCCCcceeEEe
Q 030532 132 AEWPENDYRLFCGDLGN-EVNDDVLSKAFSRFPSFNMAKVS 171 (175)
Q Consensus 132 ~Ew~~ndfrIFVGNLs~-dVTDe~L~~aFskYGSV~~AKVV 171 (175)
....+...+||||||++ ++++++|+++|++||.|.+++|.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~ 56 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK 56 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe
Confidence 34456788999999999 99999999999999999998874
No 101
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.47 E-value=8.4e-08 Score=65.23 Aligned_cols=38 Identities=8% Similarity=-0.047 Sum_probs=34.0
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
+...+||||||++++|+++|+++|++||.|..++++.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~ 50 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY 50 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEe
Confidence 35689999999999999999999999999998888876
No 102
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.46 E-value=1.7e-07 Score=66.07 Aligned_cols=39 Identities=13% Similarity=0.242 Sum_probs=35.3
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~ 44 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP 44 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC
Confidence 345689999999999999999999999999999998763
No 103
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=3.4e-07 Score=64.20 Aligned_cols=39 Identities=15% Similarity=0.382 Sum_probs=35.3
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
+.+..+||||||+.++|+++|+++|++||.|..++|..|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~ 57 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR 57 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC
Confidence 346679999999999999999999999999999998765
No 104
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.46 E-value=3e-07 Score=62.35 Aligned_cols=39 Identities=3% Similarity=-0.144 Sum_probs=35.8
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
+....+||||||++++|+++|+++|+.| .|.+++|+.|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~ 45 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNA 45 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECT
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECC
Confidence 4567899999999999999999999999 99999999873
No 105
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=3e-07 Score=63.40 Aligned_cols=39 Identities=13% Similarity=0.219 Sum_probs=34.0
Q ss_pred CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
......+||||||++++|+++|+++|++||.|. ++|+++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~ 53 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ 53 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC
Confidence 345677999999999999999999999999997 677765
No 106
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=1.5e-07 Score=64.87 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=35.1
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
+..+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~ 44 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDR 44 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCC
Confidence 45689999999999999999999999999999999873
No 107
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.45 E-value=8.7e-08 Score=70.50 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=34.9
Q ss_pred CCCCCCceeeecCCCCCCCHHHHHHHhhcCC-CcceeEEee
Q 030532 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFP-SFNMAKVSF 172 (175)
Q Consensus 133 Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYG-SV~~AKVV~ 172 (175)
..+...++||||||++++|+++|+++|++|| .|..++|+.
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~ 63 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT 63 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc
Confidence 3456789999999999999999999999999 999998864
No 108
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.45 E-value=1.5e-07 Score=65.57 Aligned_cols=39 Identities=31% Similarity=0.445 Sum_probs=35.3
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.+..+||||||++++|+++|+++|++||.|.+++|+.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~ 47 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDY 47 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCE
Confidence 456789999999999999999999999999999987653
No 109
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.45 E-value=1.2e-07 Score=66.49 Aligned_cols=39 Identities=13% Similarity=0.304 Sum_probs=35.8
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 62 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR 62 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC
Confidence 456789999999999999999999999999999998773
No 110
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.45 E-value=3.1e-07 Score=69.41 Aligned_cols=37 Identities=11% Similarity=-0.071 Sum_probs=33.2
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEee
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSF 172 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~ 172 (175)
.+-.+||||||++++|+++|+++|++||.|.+++|+.
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~ 59 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK 59 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 3456799999999999999999999999999998864
No 111
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.44 E-value=2.3e-07 Score=70.36 Aligned_cols=41 Identities=5% Similarity=-0.107 Sum_probs=37.3
Q ss_pred CCCCCceeeecCCCCCCCHHHHHHHhhcCCC---cceeEEeecC
Q 030532 134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPS---FNMAKVSFCF 174 (175)
Q Consensus 134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGS---V~~AKVV~D~ 174 (175)
.+.+..+||||||++++|+++|+++|+.||. |.+++|++|.
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~ 83 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTR 83 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECC
Confidence 3456789999999999999999999999999 8999999885
No 112
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=1.2e-07 Score=67.67 Aligned_cols=38 Identities=18% Similarity=0.420 Sum_probs=33.8
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+||||||++++|+++|+++|++||.|. ++++.|.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~ 43 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKA 43 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecC
Confidence 3567899999999999999999999999999 7777663
No 113
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=1e-07 Score=68.78 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=34.7
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
..+.++||||||++++|+++|+++|+.||.|.+++++.|
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~ 60 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAY 60 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEE
Confidence 346789999999999999999999999999998776665
No 114
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=2.4e-07 Score=65.11 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=35.6
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcc--------eeEEeec
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFN--------MAKVSFC 173 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~--------~AKVV~D 173 (175)
..+..+||||||++++|+++|+++|++||.|. .++|++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~ 58 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLD 58 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBC
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEe
Confidence 34678999999999999999999999999999 6899887
No 115
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.43 E-value=1.2e-07 Score=67.60 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=34.8
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
...+||||||+.++|+++|+++|++||.|.+++|+.|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 71 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCD 71 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec
Confidence 3568999999999999999999999999999999987
No 116
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=2.6e-07 Score=69.06 Aligned_cols=39 Identities=10% Similarity=-0.047 Sum_probs=35.1
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCc----ceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSF----NMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV----~~AKVV~D~ 174 (175)
.+..+||||||++++|+++|+++|+.||.| .+++|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~ 63 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP 63 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC
Confidence 467899999999999999999999999875 689998874
No 117
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.41 E-value=2.3e-07 Score=68.31 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=33.9
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
..-.||||||++++||++|+++|++||.|.+++|+.+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~ 56 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK 56 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC
Confidence 4568999999999999999999999999999998754
No 118
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.41 E-value=4.8e-07 Score=64.97 Aligned_cols=39 Identities=28% Similarity=0.462 Sum_probs=36.3
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
+.+..+||||||+.++|+++|+++|++||.|.+++|+.|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~ 98 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD 98 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeec
Confidence 356789999999999999999999999999999999887
No 119
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=1.5e-07 Score=65.61 Aligned_cols=39 Identities=13% Similarity=0.190 Sum_probs=35.0
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCC-cceeEEe-ec
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPS-FNMAKVS-FC 173 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGS-V~~AKVV-~D 173 (175)
+.+..+||||||++++|+++|+++|++||. |.+++|+ .|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~ 45 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 45 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSS
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccC
Confidence 356789999999999999999999999998 9999887 44
No 120
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.41 E-value=5.3e-08 Score=65.80 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=33.3
Q ss_pred eeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
+||||||+.++++++|+++|++||.|.+++|+.|.
T Consensus 3 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 37 (90)
T 2ki2_A 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDR 37 (90)
T ss_dssp EEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCS
T ss_pred EEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcC
Confidence 69999999999999999999999999999999874
No 121
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.40 E-value=2.4e-07 Score=68.54 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=36.2
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~ 82 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ 82 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence 467899999999999999999999999999999999873
No 122
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.38 E-value=1.1e-07 Score=66.77 Aligned_cols=38 Identities=13% Similarity=0.043 Sum_probs=35.2
Q ss_pred CCceeeecCCCC------CCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 137 NDYRLFCGDLGN------EVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 137 ndfrIFVGNLs~------dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.+.+||||||++ ++++++|+++|++||.|.+++|++|.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~ 48 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDE 48 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEET
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcC
Confidence 356899999999 99999999999999999999999885
No 123
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.38 E-value=2.2e-07 Score=70.90 Aligned_cols=39 Identities=8% Similarity=0.015 Sum_probs=34.5
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
+....+||||||++++|+++|+++|++|| +.+++|++|.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~ 81 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP 81 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC
Confidence 35678999999999999999999999999 7799999885
No 124
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.37 E-value=4.1e-07 Score=67.60 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=36.2
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.+..+||||||+.++|+++|.++|++||.|.+++|+.|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 75 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK 75 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence 456799999999999999999999999999999998874
No 125
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.37 E-value=4.2e-07 Score=64.99 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=33.8
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEe
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVS 171 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV 171 (175)
+....+||||||+.++|+++|+++|++||.|.+++|+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~ 64 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL 64 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 3467799999999999999999999999999998875
No 126
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.36 E-value=3.3e-07 Score=69.12 Aligned_cols=40 Identities=13% Similarity=-0.045 Sum_probs=35.4
Q ss_pred CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcc--eeEEeecC
Q 030532 134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFN--MAKVSFCF 174 (175)
Q Consensus 134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~--~AKVV~D~ 174 (175)
...+..+||||||++++|+++|+++|+.| .|. +++|++|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~ 79 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDP 79 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECC
Confidence 34567889999999999999999999999 787 89998875
No 127
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=4.6e-07 Score=62.15 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=31.2
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
...+||||||++++|+++|+++|++||.|.++ ++|
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~ 41 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMD 41 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEc
Confidence 45699999999999999999999999999875 554
No 128
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.36 E-value=3.4e-07 Score=70.32 Aligned_cols=41 Identities=22% Similarity=0.126 Sum_probs=35.2
Q ss_pred CCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 133 Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
.-+.+-.+||||||++++|+++|+++|++||.|.+++|+.+
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~ 63 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK 63 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC
Confidence 33456679999999999999999999999999999988754
No 129
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.36 E-value=2.2e-07 Score=69.21 Aligned_cols=38 Identities=11% Similarity=0.033 Sum_probs=34.5
Q ss_pred CCCceeeecCCCCC-CCHHHHHHHhhcCCCcceeEEeec
Q 030532 136 ENDYRLFCGDLGNE-VNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 136 ~ndfrIFVGNLs~d-VTDe~L~~aFskYGSV~~AKVV~D 173 (175)
....+||||||+++ +||++|+++|++||.|.+++|+.+
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~ 61 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM 61 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC
Confidence 35678999999998 999999999999999999998753
No 130
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.36 E-value=2.7e-07 Score=63.66 Aligned_cols=38 Identities=18% Similarity=0.363 Sum_probs=32.9
Q ss_pred CCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 133 Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
+++....+||||||++++|+++|+++|++||.| +|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~ 47 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN 47 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC
Confidence 356678999999999999999999999999987 55554
No 131
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.35 E-value=6.9e-07 Score=64.00 Aligned_cols=40 Identities=35% Similarity=0.672 Sum_probs=36.8
Q ss_pred CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
......+||||||+.++|+++|+++|++||.|..++|+.|
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~ 122 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD 122 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEEC
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEec
Confidence 4456789999999999999999999999999999999987
No 132
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=6.8e-07 Score=61.65 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=33.8
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcC--CCcceeEEeec
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRF--PSFNMAKVSFC 173 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskY--GSV~~AKVV~D 173 (175)
.+..+||||||++++|+++|+++|++| |.|.+++++.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g 52 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 52 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSS
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCC
Confidence 456789999999999999999999999 99998887643
No 133
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.34 E-value=4.3e-07 Score=62.69 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=32.7
Q ss_pred CCCceeeecCCCC-CCCHHHHHHHhhcCCCcceeEEe
Q 030532 136 ENDYRLFCGDLGN-EVNDDVLSKAFSRFPSFNMAKVS 171 (175)
Q Consensus 136 ~ndfrIFVGNLs~-dVTDe~L~~aFskYGSV~~AKVV 171 (175)
+...+||||||++ ++|+++|+++|++||.|.+++|.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~ 44 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK 44 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe
Confidence 4677999999999 99999999999999999998874
No 134
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.33 E-value=1.7e-07 Score=66.69 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=35.2
Q ss_pred CCceeeecCCCCCCCHHHHH---HHhhcCCCcceeEEeecC
Q 030532 137 NDYRLFCGDLGNEVNDDVLS---KAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~---~aFskYGSV~~AKVV~D~ 174 (175)
...+||||||++++++++|. ++|++||.|.+++|+.|.
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~ 54 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNST 54 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCC
Confidence 46689999999999999999 999999999999998774
No 135
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.32 E-value=3.3e-07 Score=62.54 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=36.9
Q ss_pred cccCCCCCCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCccee
Q 030532 125 TWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA 168 (175)
Q Consensus 125 ~WeDptL~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~A 168 (175)
.|.+|...+-+....+||||||++++|+++|+++|++||.|..+
T Consensus 3 ~~~~p~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~ 46 (96)
T 1fjc_A 3 MLEDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV 46 (96)
T ss_dssp CSSCTTTTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE
T ss_pred cccCccccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe
Confidence 45666655566678899999999999999999999999987654
No 136
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.31 E-value=4.8e-07 Score=66.05 Aligned_cols=38 Identities=5% Similarity=0.031 Sum_probs=35.0
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.+.++||||||++++|+++|+++|+.| .|.+++|++|.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~ 51 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH 51 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC
Confidence 356799999999999999999999999 89999999885
No 137
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.27 E-value=3.5e-07 Score=65.57 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=32.7
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEee
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSF 172 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~ 172 (175)
...+||||||++++|+++|+++|++||.|.+++|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 44 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE 44 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC
Confidence 456899999999999999999999999999988764
No 138
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.27 E-value=4.8e-07 Score=60.33 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=34.0
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcC----C-------CcceeEEeec
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRF----P-------SFNMAKVSFC 173 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskY----G-------SV~~AKVV~D 173 (175)
....+||||||++++|+++|+++|++| | .|.++++..|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~ 52 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD 52 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC
Confidence 456789999999999999999999999 8 8888888765
No 139
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.27 E-value=7.5e-07 Score=67.28 Aligned_cols=37 Identities=14% Similarity=0.366 Sum_probs=34.3
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
...+||||||++++|+++|.++|++||.|..++|+.|
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~ 107 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD 107 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEec
Confidence 4567999999999999999999999999999999987
No 140
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.27 E-value=4.6e-07 Score=67.29 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=35.6
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~ 83 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR 83 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC
Confidence 356789999999999999999999999999999998873
No 141
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.27 E-value=1.4e-06 Score=61.21 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=31.5
Q ss_pred CCceeeecCCCCC-CCHHHHHHHhhcCCCcceeEE
Q 030532 137 NDYRLFCGDLGNE-VNDDVLSKAFSRFPSFNMAKV 170 (175)
Q Consensus 137 ndfrIFVGNLs~d-VTDe~L~~aFskYGSV~~AKV 170 (175)
...+||||||+++ +|+++|+++|++||.|.+++|
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i 60 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV 60 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE
Confidence 4579999999999 999999999999999998876
No 142
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.26 E-value=7.6e-07 Score=60.59 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=30.0
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCC-cceeEE
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPS-FNMAKV 170 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGS-V~~AKV 170 (175)
....+||||||++++|+++|+++|++||. |...+|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~ 41 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL 41 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE
Confidence 45678999999999999999999999999 554443
No 143
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.26 E-value=5.2e-07 Score=66.34 Aligned_cols=37 Identities=8% Similarity=0.056 Sum_probs=33.8
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
....||||||++++||++|+++|++||.|.+++++..
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~ 42 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN 42 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC
Confidence 3567999999999999999999999999999998763
No 144
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.26 E-value=6.7e-07 Score=67.30 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=34.6
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
...+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~ 64 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDS 64 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecC
Confidence 35689999999999999999999999999999998874
No 145
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.25 E-value=7.7e-07 Score=69.02 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=35.4
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
...+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~ 139 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE 139 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC
Confidence 45689999999999999999999999999999999874
No 146
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.25 E-value=1.4e-06 Score=67.78 Aligned_cols=38 Identities=21% Similarity=0.353 Sum_probs=35.2
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
...+||||||++++++++|.++|++||.|..++|+.|.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~ 124 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR 124 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 35789999999999999999999999999999999874
No 147
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.24 E-value=8.5e-07 Score=60.40 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=32.9
Q ss_pred CCCceeeecCCCCCCCHHHHH----HHhhcCCCcceeEEe
Q 030532 136 ENDYRLFCGDLGNEVNDDVLS----KAFSRFPSFNMAKVS 171 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~----~aFskYGSV~~AKVV 171 (175)
+...+||||||+.++|+++|+ ++|++||.|.+++|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~ 45 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS 45 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE
Confidence 466799999999999999999 999999999998775
No 148
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.55 E-value=1.4e-07 Score=66.99 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=35.5
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcce--------eEEeec
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNM--------AKVSFC 173 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~--------AKVV~D 173 (175)
+.+..+||||||+.++|+++|+++|++||.|.. ++|++|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~ 50 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTD 50 (116)
Confidence 346779999999999999999999999999998 888877
No 149
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.23 E-value=1.2e-06 Score=65.06 Aligned_cols=39 Identities=10% Similarity=0.263 Sum_probs=35.4
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+||||||++++|+++|+++|++||.|..++|+.|.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 140 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC
Confidence 345789999999999999999999999999999999874
No 150
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.23 E-value=1.1e-06 Score=59.82 Aligned_cols=35 Identities=9% Similarity=0.208 Sum_probs=32.0
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEe
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVS 171 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV 171 (175)
.+..+||||||++++|+++|+++|++| .|.+++|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~ 37 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD 37 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe
Confidence 467899999999999999999999999 99998873
No 151
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.22 E-value=5.9e-07 Score=71.33 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=39.3
Q ss_pred CCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 132 AEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 132 ~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.+|...+.+||||||++++|+++|+++|+.||.|.+++|+.|.
T Consensus 89 v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~ 131 (284)
T 3smz_A 89 VQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSE 131 (284)
T ss_dssp EEECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred EEecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeC
Confidence 4567788999999999999999999999999999999999874
No 152
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.22 E-value=6.6e-07 Score=59.82 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=30.3
Q ss_pred ceeeecCCCCCC------CHHHHHHHhhcCCCcceeEEe
Q 030532 139 YRLFCGDLGNEV------NDDVLSKAFSRFPSFNMAKVS 171 (175)
Q Consensus 139 frIFVGNLs~dV------TDe~L~~aFskYGSV~~AKVV 171 (175)
.+||||||+.++ |+++|+++|++||.|.+++|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~ 40 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP 40 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec
Confidence 479999999999 669999999999999998876
No 153
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.21 E-value=6.9e-07 Score=71.47 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=38.7
Q ss_pred CCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 132 AEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 132 ~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.+|..+..+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 90 v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~ 132 (261)
T 3sde_A 90 IRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD 132 (261)
T ss_dssp EEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET
T ss_pred eeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC
Confidence 3455667899999999999999999999999999999999884
No 154
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.20 E-value=2.7e-07 Score=67.70 Aligned_cols=33 Identities=24% Similarity=0.524 Sum_probs=30.3
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCccee
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA 168 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~A 168 (175)
....+||||||++++|+++|+++|++||.|..+
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~ 75 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSE 75 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccc
Confidence 356789999999999999999999999999876
No 155
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.20 E-value=8.6e-07 Score=70.68 Aligned_cols=39 Identities=23% Similarity=0.167 Sum_probs=34.8
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
+.+-.+||||||++++|+++|+++|++||.|.+++|+.+
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k 81 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK 81 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC
Confidence 345678999999999999999999999999999998654
No 156
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.19 E-value=1.3e-06 Score=63.19 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=35.5
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
...+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~ 131 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP 131 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC
Confidence 56789999999999999999999999999999999874
No 157
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.19 E-value=5.5e-07 Score=67.65 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=32.7
Q ss_pred CCceeee--cCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 137 NDYRLFC--GDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 137 ndfrIFV--GNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
...+||| |||++++||++|+++|++||.|.+++|+.|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~ 62 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN 62 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC
Confidence 4567999 889999999999999999999999877644
No 158
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.17 E-value=1.4e-06 Score=61.25 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=32.5
Q ss_pred CCCceeeecCCCCCC------CHHHHHHHhhcCCCcceeEEe
Q 030532 136 ENDYRLFCGDLGNEV------NDDVLSKAFSRFPSFNMAKVS 171 (175)
Q Consensus 136 ~ndfrIFVGNLs~dV------TDe~L~~aFskYGSV~~AKVV 171 (175)
....+||||||++++ |+++|+++|++||.|.+++|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~ 54 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP 54 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee
Confidence 346789999999999 679999999999999999877
No 159
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.15 E-value=3.2e-06 Score=61.47 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=36.1
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+||||||+.++|+++|+++|++||.|..++|+.|.
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~ 130 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 130 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECT
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecC
Confidence 347899999999999999999999999999999999874
No 160
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.15 E-value=4e-07 Score=63.98 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=29.8
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeE
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAK 169 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AK 169 (175)
....+||||||+.++|+++|+++|++||.|.++.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~ 56 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPP 56 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceE
Confidence 3567999999999999999999999999985443
No 161
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.14 E-value=2.3e-06 Score=64.30 Aligned_cols=39 Identities=15% Similarity=0.272 Sum_probs=35.8
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+|||+||+.++|+++|+++|++||.|..++|+.|.
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~ 161 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDP 161 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECT
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecC
Confidence 355799999999999999999999999999999999873
No 162
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.12 E-value=2.4e-06 Score=67.14 Aligned_cols=37 Identities=3% Similarity=0.003 Sum_probs=34.7
Q ss_pred CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
..+||||||++++|+++|+++|++||.|..++|+.|.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~ 145 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL 145 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC
Confidence 4689999999999999999999999999999999875
No 163
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.11 E-value=1.2e-06 Score=63.47 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=35.0
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
...+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 123 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK 123 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC
Confidence 45689999999999999999999999999999998873
No 164
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.11 E-value=2.9e-06 Score=62.98 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=36.2
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~ 150 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 150 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecC
Confidence 466899999999999999999999999999999999874
No 165
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.11 E-value=1.9e-06 Score=67.52 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=36.0
Q ss_pred CCCceeeecCCCC-CCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGN-EVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~-dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+||||||++ ++|+++|+++|++||.|.+++|+.|.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~ 71 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK 71 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC
Confidence 4677999999999 99999999999999999999999874
No 166
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.08 E-value=6.2e-06 Score=56.74 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=31.0
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEe
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVS 171 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV 171 (175)
.....+|||||| ++|+++|+++|++||.|.+++|.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~ 46 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD 46 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec
Confidence 346679999996 99999999999999999998874
No 167
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.08 E-value=4.2e-06 Score=66.32 Aligned_cols=40 Identities=28% Similarity=0.379 Sum_probs=36.0
Q ss_pred CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
+....+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence 3456789999999999999999999999999999998763
No 168
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.07 E-value=4.3e-06 Score=60.32 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=35.9
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+|||+||+.++|+++|+++|++||.|..++|+.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~ 125 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDK 125 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECT
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcC
Confidence 356789999999999999999999999999999998874
No 169
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.05 E-value=4.2e-06 Score=59.92 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=35.3
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
...+||||||+.++|+++|+++|++||.|..++|+.|.
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~ 124 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 124 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecC
Confidence 46789999999999999999999999999999998874
No 170
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.03 E-value=2.6e-06 Score=67.90 Aligned_cols=41 Identities=12% Similarity=0.094 Sum_probs=34.4
Q ss_pred CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
-+....+||||||++++|+++|+++|+.||.|.+++|+.|.
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 77 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSL 77 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 34567899999999999999999999999999999999874
No 171
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.02 E-value=3.8e-06 Score=67.19 Aligned_cols=38 Identities=18% Similarity=0.393 Sum_probs=35.0
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D 173 (175)
.+..+||||||++++|+++|+++|++||.|.+++|+.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 57 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD 57 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC
Confidence 46789999999999999999999999999999998754
No 172
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.01 E-value=4.6e-06 Score=62.43 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=31.5
Q ss_pred CCCceeeecCCCCCCCHHHHH----HHhhcCCCcceeEEee
Q 030532 136 ENDYRLFCGDLGNEVNDDVLS----KAFSRFPSFNMAKVSF 172 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~----~aFskYGSV~~AKVV~ 172 (175)
+...+||||||++++++++|+ ++|++||.|.+++|..
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~ 67 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL 67 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc
Confidence 346789999999999998865 7999999999887654
No 173
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.99 E-value=2.8e-06 Score=67.05 Aligned_cols=37 Identities=14% Similarity=-0.041 Sum_probs=33.6
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcCCCc--ceeEEeec
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSF--NMAKVSFC 173 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV--~~AKVV~D 173 (175)
...+||||||++++||++|+++|++||.| .+++|+.|
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~ 160 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSG 160 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcC
Confidence 34579999999999999999999999999 88998876
No 174
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.97 E-value=8.3e-06 Score=56.05 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=32.1
Q ss_pred CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.+....+||||||++++|+++|+++|+.|+ .++|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~ 48 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDR 48 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECS
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecC
Confidence 456778999999999999999999999874 56777763
No 175
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=97.83 E-value=9.4e-06 Score=67.71 Aligned_cols=39 Identities=13% Similarity=0.275 Sum_probs=35.2
Q ss_pred CCCCceeeecCCCCCC---------CHHHHHHHhhcCCCcceeEEeec
Q 030532 135 PENDYRLFCGDLGNEV---------NDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 135 ~~ndfrIFVGNLs~dV---------TDe~L~~aFskYGSV~~AKVV~D 173 (175)
+....+||||||+.++ +|++|+++|++||.|.+++|+.+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~ 178 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES 178 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC
Confidence 4567799999999999 79999999999999999999864
No 176
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.82 E-value=7.8e-06 Score=65.10 Aligned_cols=38 Identities=3% Similarity=0.008 Sum_probs=33.6
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcCC-CcceeEEeecC
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRFP-SFNMAKVSFCF 174 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskYG-SV~~AKVV~D~ 174 (175)
+..+||||||+.++|+++|+++|+.|| .|.+++|+.|.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~ 154 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR 154 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC---
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC
Confidence 678999999999999999999999999 99999998764
No 177
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.80 E-value=2.1e-05 Score=57.55 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=30.5
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEe
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVS 171 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV 171 (175)
....+|||||| ++|+++|+++|++||.|.+++|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~ 70 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD 70 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe
Confidence 45678999996 79999999999999999998875
No 178
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.79 E-value=3.6e-05 Score=57.77 Aligned_cols=38 Identities=16% Similarity=0.035 Sum_probs=34.2
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCC-CcceeEEeec
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFP-SFNMAKVSFC 173 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYG-SV~~AKVV~D 173 (175)
....+||||||+.++|+++|+++|++|| .|..++|+.+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 3467899999999999999999999999 9999998653
No 179
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.70 E-value=3.9e-05 Score=60.82 Aligned_cols=39 Identities=18% Similarity=0.127 Sum_probs=35.2
Q ss_pred CCCceeeecCCCCCC-CHHHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNEV-NDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~dV-TDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
....+|||+||+.++ |+++|+++|+.||.|.+++|+.|.
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~ 221 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ 221 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC
Confidence 356689999999996 999999999999999999999874
No 180
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.63 E-value=5.8e-05 Score=59.04 Aligned_cols=36 Identities=17% Similarity=0.067 Sum_probs=33.2
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcCC-CcceeEEee
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRFP-SFNMAKVSF 172 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskYG-SV~~AKVV~ 172 (175)
...+|||+||+.++|+++|+++|++|| .|..++|+.
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 467899999999999999999999999 999999864
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.51 E-value=7.3e-05 Score=54.71 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=29.1
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCccee
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA 168 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~A 168 (175)
....+||||||+.++|+++|+++|++||.|..+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~ 129 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV 129 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe
Confidence 356789999999999999999999999987543
No 182
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.38 E-value=8.8e-05 Score=56.57 Aligned_cols=38 Identities=11% Similarity=-0.087 Sum_probs=34.5
Q ss_pred CCceeeecCCCCC-CCHHHHHHHhhcCCCcceeEEeecC
Q 030532 137 NDYRLFCGDLGNE-VNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 137 ndfrIFVGNLs~d-VTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
...-||||||+++ +++++|+++|++||.|..+.++.|.
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~ 55 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA 55 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC
Confidence 4556999999999 9999999999999999999888775
No 183
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.24 E-value=0.00024 Score=52.98 Aligned_cols=33 Identities=9% Similarity=0.003 Sum_probs=27.4
Q ss_pred CCCceeeecCCCCCCCHHH----HHHHhhcCC-Cccee
Q 030532 136 ENDYRLFCGDLGNEVNDDV----LSKAFSRFP-SFNMA 168 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~----L~~aFskYG-SV~~A 168 (175)
+++..||||||++++++++ |+++|++|| .|.++
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V 44 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI 44 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE
Confidence 4566699999999999988 668999995 87663
No 184
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=96.21 E-value=0.0039 Score=44.80 Aligned_cols=36 Identities=3% Similarity=-0.090 Sum_probs=28.7
Q ss_pred ceeeecCCCC-----CCCHHHHHHHhhcCCCcceeEEeecC
Q 030532 139 YRLFCGDLGN-----EVNDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 139 frIFVGNLs~-----dVTDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
-.|+++||-. +-++++|++.|++||.|.+++|+.|.
T Consensus 9 ~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~ 49 (105)
T 2pe8_A 9 KVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIP 49 (105)
T ss_dssp SEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECS
T ss_pred CEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCC
Confidence 3577787763 33689999999999999999999873
No 185
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.04 E-value=0.011 Score=42.59 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHhhcCCCcceeEEe
Q 030532 148 NEVNDDVLSKAFSRFPSFNMAKVS 171 (175)
Q Consensus 148 ~dVTDe~L~~aFskYGSV~~AKVV 171 (175)
.++|+++|+++|++||.|.+++|+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~ 50 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS 50 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc
Confidence 578999999999999999999886
No 186
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=95.97 E-value=0.00093 Score=47.79 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=27.8
Q ss_pred eecCCCCCCCHHHHHHHh------------hcCCCcceeEEeecC
Q 030532 142 FCGDLGNEVNDDVLSKAF------------SRFPSFNMAKVSFCF 174 (175)
Q Consensus 142 FVGNLs~dVTDe~L~~aF------------skYGSV~~AKVV~D~ 174 (175)
.++||++++++++|.+.| ++||.|.+++|+.|.
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~ 63 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL 63 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC
Confidence 378899999998888777 999999999999874
No 187
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.37 E-value=0.02 Score=40.33 Aligned_cols=37 Identities=11% Similarity=0.172 Sum_probs=29.0
Q ss_pred CCCceeeecCCCCCCC-----------HHHHHHHhhcCCCcceeEEeec
Q 030532 136 ENDYRLFCGDLGNEVN-----------DDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVT-----------De~L~~aFskYGSV~~AKVV~D 173 (175)
...-.|+|.||-...+ +++|+++|++||.|.++.| .|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~ 60 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FD 60 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ET
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ec
Confidence 4566799999944432 5899999999999999955 55
No 188
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.00 E-value=0.074 Score=39.11 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=30.4
Q ss_pred CCCceeeecCCC----CCCCH----HHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLG----NEVND----DVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs----~dVTD----e~L~~aFskYGSV~~AKVV~D~ 174 (175)
+.+-+|+|--++ .+.-| .+|.+.|++||.|..+||+.|.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~ 51 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK 51 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC
Confidence 456777877766 23334 7799999999999999999884
No 189
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=92.50 E-value=0.1 Score=38.30 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=21.1
Q ss_pred HHHHHHHhhcCCCcceeEEeecC
Q 030532 152 DDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 152 De~L~~aFskYGSV~~AKVV~D~ 174 (175)
+++|++.|++||.|.+++|+.|.
T Consensus 39 eedl~eef~k~G~V~~v~I~~~~ 61 (118)
T 3ue2_A 39 EGEVTEECGKFGAVNRVIIYQEK 61 (118)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEEE
T ss_pred HHHHHHHHhccCCEeEEEEeecC
Confidence 58999999999999999999873
No 190
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=90.71 E-value=0.11 Score=36.93 Aligned_cols=24 Identities=4% Similarity=-0.013 Sum_probs=21.1
Q ss_pred CHHHHHHHhhcCCCcceeEEeecC
Q 030532 151 NDDVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 151 TDe~L~~aFskYGSV~~AKVV~D~ 174 (175)
.+++|++.|++||.|.+++|+.|.
T Consensus 28 ~~~dl~~~f~k~G~V~~v~i~~~~ 51 (105)
T 3v4m_A 28 IVEDVRDECSKYGLVKSIEIPRPV 51 (105)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCCB
T ss_pred HHHHHHHHHHccCCEEEEEEeccC
Confidence 347999999999999999998874
No 191
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.29 E-value=0.14 Score=38.11 Aligned_cols=39 Identities=5% Similarity=0.006 Sum_probs=31.3
Q ss_pred CCCceeeecCCCCC-----CCH----HHHHHHhhcCCCcceeEEeecC
Q 030532 136 ENDYRLFCGDLGNE-----VND----DVLSKAFSRFPSFNMAKVSFCF 174 (175)
Q Consensus 136 ~ndfrIFVGNLs~d-----VTD----e~L~~aFskYGSV~~AKVV~D~ 174 (175)
+.+-+|+|--++.. .-| .+|.+.|+.||.|..+|++.|.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~ 60 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ 60 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc
Confidence 57889999988632 223 5688999999999999999874
No 192
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=86.88 E-value=0.38 Score=35.15 Aligned_cols=21 Identities=10% Similarity=-0.055 Sum_probs=18.9
Q ss_pred HHHHHHhhcCCCcceeEEeec
Q 030532 153 DVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 153 e~L~~aFskYGSV~~AKVV~D 173 (175)
++|++.|++||.|.+++|..|
T Consensus 32 edl~~~f~kfG~V~~v~i~~~ 52 (114)
T 3s6e_A 32 DDVIEECNKHGGVIHIYVDKN 52 (114)
T ss_dssp HHHHHHHTTTTCCSEEEECTT
T ss_pred HHHHHHHhccCCEEEEEEecC
Confidence 789999999999999988765
No 193
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=80.47 E-value=0.36 Score=33.95 Aligned_cols=19 Identities=5% Similarity=0.156 Sum_probs=0.0
Q ss_pred CCCceeeecCCCCCCCHHH
Q 030532 136 ENDYRLFCGDLGNEVNDDV 154 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~ 154 (175)
....+|||+||+.++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3455799999999999874
No 194
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=76.76 E-value=1.3 Score=34.09 Aligned_cols=23 Identities=9% Similarity=0.104 Sum_probs=20.6
Q ss_pred CHHHHHHHhhcCCCcceeEEeec
Q 030532 151 NDDVLSKAFSRFPSFNMAKVSFC 173 (175)
Q Consensus 151 TDe~L~~aFskYGSV~~AKVV~D 173 (175)
.+++|.+.|++||.|.+++|+.|
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~ 164 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQE 164 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEE
T ss_pred HHHHHHHHHHccCCeEEEEEecC
Confidence 56899999999999999999865
No 195
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=67.51 E-value=5.6 Score=29.91 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=24.5
Q ss_pred CCCceeeecCCCCCCCHHHHHHHhhcCCCcc
Q 030532 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFN 166 (175)
Q Consensus 136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~ 166 (175)
..--++|+=+.+.+....+|.++|+.||.|.
T Consensus 13 p~r~HVf~l~FP~ewKt~DI~~lFs~fggv~ 43 (100)
T 1whv_A 13 PKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQ 43 (100)
T ss_dssp CCCCSEEEEECCTTCCHHHHHHHHTTTCSCC
T ss_pred CCCCeEEEEeCChhhhhHHHHHHhhccCCEE
Confidence 3333445449999999999999999999763
No 196
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=55.19 E-value=5.3 Score=30.04 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.7
Q ss_pred eeecCCCCCCCHHHHHHHhhcCCCc
Q 030532 141 LFCGDLGNEVNDDVLSKAFSRFPSF 165 (175)
Q Consensus 141 IFVGNLs~dVTDe~L~~aFskYGSV 165 (175)
+|+=+.+.+....+|.++|+.||.|
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fggv 32 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGNI 32 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEEE
T ss_pred EEEEeCChhhhhHHHHHHHhccCCE
Confidence 4444999999999999999999965
No 197
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=35.16 E-value=28 Score=28.56 Aligned_cols=34 Identities=9% Similarity=0.157 Sum_probs=28.3
Q ss_pred CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEee
Q 030532 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSF 172 (175)
Q Consensus 138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~ 172 (175)
.+-+.||||++.++...|.+++.. +.+..+-+++
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 467899999999999999999987 7777765554
No 198
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=32.75 E-value=21 Score=32.40 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=24.7
Q ss_pred CceeeecCCCCCCCHHHHHHHhhcCCCcceeE
Q 030532 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAK 169 (175)
Q Consensus 138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AK 169 (175)
.-+|||. .+.++++.+|.+-|++||.|.++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~ 83 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHF 83 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEE
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEE
Confidence 4569997 799999999999999999998864
No 199
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.52 E-value=80 Score=23.61 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.0
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhc
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSR 161 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFsk 161 (175)
-...|.|-||+.+++|+.|.-.|+.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn 31 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFEN 31 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHC
T ss_pred CccEEEEECCCCCCChhHheEEEeC
Confidence 3568999999999999999999974
No 200
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.43 E-value=32 Score=25.67 Aligned_cols=28 Identities=11% Similarity=0.180 Sum_probs=20.3
Q ss_pred CceeeecCCCCCC-CH----HHHHHHhhcCCCc
Q 030532 138 DYRLFCGDLGNEV-ND----DVLSKAFSRFPSF 165 (175)
Q Consensus 138 dfrIFVGNLs~dV-TD----e~L~~aFskYGSV 165 (175)
..+|+|-||+.+| ++ +.++++|..|+.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~ 37 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKD 37 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSS
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcC
Confidence 4579999998877 33 4567888887744
No 201
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=29.06 E-value=44 Score=26.98 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=27.6
Q ss_pred CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEee
Q 030532 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSF 172 (175)
Q Consensus 138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~ 172 (175)
.+. .||||++.++...|.+++...+.+..+-+++
T Consensus 97 ~~~-vv~NlPY~is~~il~~ll~~~~~~~~~~lm~ 130 (255)
T 3tqs_A 97 PLR-VVGNLPYNISTPLLFHLFSQIHCIEDMHFML 130 (255)
T ss_dssp CEE-EEEECCHHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred CeE-EEecCCcccCHHHHHHHHhCCCChheEEEEE
Confidence 455 7999999999999999998766676666554
No 202
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=27.84 E-value=63 Score=24.88 Aligned_cols=38 Identities=8% Similarity=0.032 Sum_probs=31.9
Q ss_pred CCceeeecCCCCCCCHHHHHHHhhcC-----CCcceeEEeecC
Q 030532 137 NDYRLFCGDLGNEVNDDVLSKAFSRF-----PSFNMAKVSFCF 174 (175)
Q Consensus 137 ndfrIFVGNLs~dVTDe~L~~aFskY-----GSV~~AKVV~D~ 174 (175)
++-.|=+-||+..|+|..++.+.+.| |.+.+.-++-|.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH 62 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF 62 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC
Confidence 45567788999999999999999999 988887766664
No 203
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=25.43 E-value=24 Score=28.94 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=26.6
Q ss_pred eeeecCCCCCCCHHHHHHHhhcCCCcceeEEee
Q 030532 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSF 172 (175)
Q Consensus 140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~ 172 (175)
-..||||++.++...|.+++..-..+..+-+++
T Consensus 116 ~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 116 LRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp EEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred eEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 468999999999999999998666666665554
No 204
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=22.18 E-value=32 Score=29.71 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=19.1
Q ss_pred eeecCCCCCCCHHHHHHHhhc
Q 030532 141 LFCGDLGNEVNDDVLSKAFSR 161 (175)
Q Consensus 141 IFVGNLs~dVTDe~L~~aFsk 161 (175)
..||||++.++...|.+++..
T Consensus 145 ~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 145 LTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEECCSTTHHHHHHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHh
Confidence 789999999999999999873
No 205
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=21.90 E-value=46 Score=26.57 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=26.6
Q ss_pred CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEee
Q 030532 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSF 172 (175)
Q Consensus 138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~ 172 (175)
.+ +.||||++.++...|.+++.....+..+-+++
T Consensus 96 ~~-~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~ 129 (249)
T 3ftd_A 96 EL-KVVGNLPYNVASLIIENTVYNKDCVPLAVFMV 129 (249)
T ss_dssp SE-EEEEECCTTTHHHHHHHHHHTGGGCSEEEEEE
T ss_pred Cc-EEEEECchhccHHHHHHHHhcCCCCceEEEEE
Confidence 44 78999999999999999998655556655544
Done!