BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030533
(175 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NWB|A Chain A, Solution Nmr Structure Of Protein Aq_1857 From Aquifex
Aeolicus: Northeast Structural Genomics Consortium
Target Qr6
Length = 124
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
Query: 69 LTEKALKHLSKMRSERS-EDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFV 127
+T+KA++ + K+ E + E+ LRI V GGCSG Y M F++ D V EYDG
Sbjct: 12 VTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDD--TVEEGDHVFEYDGVK 69
Query: 128 IVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFA 172
+V DP S+ ++ G +LDY +GGGF+ +NPNAT +CGCG SF+
Sbjct: 70 VVIDPFSMPYVNGAELDYVVDFMGGGFTIRNPNATGSCGCGSSFS 114
>pdb|1R94|A Chain A, Crystal Structure Of Isca (mercury Derivative)
pdb|1R94|B Chain B, Crystal Structure Of Isca (mercury Derivative)
pdb|1R95|A Chain A, Crystal Structure Of Isca (Native)
pdb|1R95|B Chain B, Crystal Structure Of Isca (Native)
Length = 118
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
Query: 66 AILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDG 125
+I L++ A ++ + R + LR+GV+ GCSGM+Y +EF + P+D V E G
Sbjct: 2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKG 59
Query: 126 FVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSF 171
+V D KSL FL G QLD+ + GF F NPN CGCG+SF
Sbjct: 60 VKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105
>pdb|1S98|A Chain A, E.Coli Isca Crystal Structure To 2.3 A
pdb|1S98|B Chain B, E.Coli Isca Crystal Structure To 2.3 A
Length = 107
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
Query: 66 AILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDG 125
+I L++ A ++ + R + LR+GV+ GCSGM+Y +EF + P+D V E G
Sbjct: 2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKG 59
Query: 126 FVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSF 171
+V D KS+ FL G QLD+ + GF F NPN CGCG+SF
Sbjct: 60 VKVVVDGKSMQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105
>pdb|2APN|A Chain A, Hi1723 Solution Structure
Length = 114
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Query: 61 EDLKPAILLTEKALKHLSKMRSER-SEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDS 119
+D+ + T+ A + + SE + DL LR+ + GGCSG Y F+ + N D
Sbjct: 3 DDMAVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVN--DGDL 60
Query: 120 VIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFA 172
IE G +V DP SL +L G +DY++ L G F+ NPNAT TCGCG SF+
Sbjct: 61 TIEKSGVQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFS 113
>pdb|1X0G|A Chain A, Crystal Structure Of Isca With The [2fe-2s] Cluster
pdb|1X0G|B Chain B, Crystal Structure Of Isca With The [2fe-2s] Cluster
pdb|1X0G|C Chain C, Crystal Structure Of Isca With The [2fe-2s] Cluster
pdb|1X0G|D Chain D, Crystal Structure Of Isca With The [2fe-2s] Cluster
Length = 112
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 67 ILLTEKALKHLSKMRSE---RSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEY 123
+ LT A++ L ++++ R + LRI V+ C Y + A +P D + +
Sbjct: 2 VELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALV--AEPKPTDLLTQS 59
Query: 124 DGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSF 171
G+ I ++ L G+++DY + L+GG F F NPNA+QTCGCG +F
Sbjct: 60 QGWTIAIAAEAAELLRGLRVDYIEDLMGGAFRFHNPNASQTCGCGMAF 107
>pdb|2D2A|A Chain A, Crystal Structure Of Escherichia Coli Sufa Involved In
Biosynthesis Of Iron-Sulfur Clusters
pdb|2D2A|B Chain B, Crystal Structure Of Escherichia Coli Sufa Involved In
Biosynthesis Of Iron-Sulfur Clusters
Length = 145
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 66 AILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDG 125
+ LT A H+ ++ +++ + +R+GVKQ GC+G Y ++ + + DD + E+DG
Sbjct: 40 GLTLTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLD--SVSEPDKDDLLFEHDG 97
Query: 126 FVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAA 173
+ +++ F+ G ++D+ + F F NP A CGCG+SF
Sbjct: 98 AKLFVPLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESFGV 145
>pdb|2E1E|A Chain A, Crystal Structure Of The Hrdc Domain Of Human Werner
Syndrome Protein, Wrn
pdb|2E1F|A Chain A, Crystal Structure Of The Hrdc Domain Of Human Werner
Syndrome Protein, Wrn
Length = 103
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 62 DLKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEF 108
D+ PAIL T K L ++KMR E++ GV +G + ++ +E
Sbjct: 33 DVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAMLAPLLEV 79
>pdb|2DGZ|A Chain A, Solution Structure Of The Helicase And Rnase D C-Terminal
Domain In Werner Syndrome Atp-Dependent Helicase
Length = 113
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 62 DLKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEF 108
D+ PAIL T K L ++KMR E++ GV +G + ++ E
Sbjct: 40 DVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAMLAPLWEV 86
>pdb|3GI1|A Chain A, Crystal Structure Of The Laminin-Binding Protein Lbp Of
Streptococcus Pyogenes
pdb|3GI1|B Chain B, Crystal Structure Of The Laminin-Binding Protein Lbp Of
Streptococcus Pyogenes
Length = 286
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 64 KPAILLTEKALKHLSKMRSERS-------EDLCLRIGVKQGGCSGMSYTMEFENRANARP 116
K A LTE+ + K+RS+ L R G+KQ G SG+S E R
Sbjct: 161 KEAEQLTEEYTQKFKKVRSKTFVTQHTAFSYLAKRFGLKQLGISGISPEQEPSPRQLKEI 220
Query: 117 DDSVIEYDGFVIVCD 131
D V EY+ I +
Sbjct: 221 QDFVKEYNVKTIFAE 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,365,369
Number of Sequences: 62578
Number of extensions: 143298
Number of successful extensions: 235
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 10
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)