Query 030533
Match_columns 175
No_of_seqs 160 out of 1231
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 00:48:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030533.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030533hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r94_A Protein YFHF; tetrameri 100.0 9.8E-38 3.3E-42 234.2 10.9 108 65-174 1-108 (118)
2 1nwb_A Hypothetical protein AQ 100.0 2.9E-37 9.9E-42 233.5 8.6 109 64-174 7-116 (124)
3 1x0g_A ISCA; [2Fe-2S], biosynt 100.0 3.5E-37 1.2E-41 228.9 6.0 107 66-174 1-110 (112)
4 2d2a_A SUFA protein; iron-sulf 100.0 2.5E-36 8.7E-41 234.3 11.1 108 64-173 38-145 (145)
5 2apn_A Protein HI1723; HI1723 100.0 1.1E-36 3.8E-41 226.7 6.8 111 61-173 3-114 (114)
6 2k4z_A DSRR; ISCA/SUFA/HESB li 99.9 8E-27 2.7E-31 176.7 11.4 99 63-166 19-121 (125)
7 2p2e_A Putative Fe-S biosynthe 99.8 1.5E-21 5.2E-26 148.2 7.4 96 64-162 2-115 (128)
8 2qgo_A Putative Fe-S biosynthe 99.8 7E-20 2.4E-24 141.3 5.0 90 64-160 3-103 (141)
9 1znf_A 31ST zinc finger from X 35.9 12 0.00042 17.7 0.8 10 164-173 3-13 (27)
10 2lvu_A Zinc finger and BTB dom 39.8 8.8 0.0003 18.2 0.0 10 164-173 4-14 (26)
11 1ard_A Yeast transcription fac 33.5 14 0.00048 17.6 0.8 10 164-173 4-14 (29)
12 1paa_A Yeast transcription fac 33.3 14 0.00048 17.9 0.8 10 164-173 4-14 (30)
13 2m0e_A Zinc finger and BTB dom 31.7 17 0.00058 17.2 0.9 10 164-173 4-14 (29)
14 2kvh_A Zinc finger and BTB dom 31.5 12 0.0004 17.9 0.3 10 164-173 5-15 (27)
15 1klr_A Zinc finger Y-chromosom 29.6 18 0.00062 17.2 0.8 10 164-173 4-14 (30)
16 2m0d_A Zinc finger and BTB dom 29.5 14 0.00047 17.7 0.3 10 164-173 5-15 (30)
17 1rik_A E6APC1 peptide; E6-bind 28.9 15 0.00052 17.6 0.5 10 164-173 4-14 (29)
18 2kfq_A FP1; protein, de novo p 28.4 15 0.00051 18.7 0.4 10 164-173 4-14 (32)
19 2kvf_A Zinc finger and BTB dom 28.4 15 0.0005 17.6 0.3 10 164-173 5-15 (28)
20 1p7a_A BF3, BKLF, kruppel-like 28.0 20 0.00069 18.4 0.9 11 163-173 12-23 (37)
21 1rim_A E6APC2 peptide; E6-bind 26.8 22 0.00075 18.2 0.9 10 164-173 4-14 (33)
22 2m0f_A Zinc finger and BTB dom 26.3 17 0.00057 17.3 0.3 10 164-173 4-14 (29)
23 2kvg_A Zinc finger and BTB dom 26.0 12 0.0004 18.1 -0.3 10 164-173 5-15 (27)
24 2lvt_A Zinc finger and BTB dom 31.7 14 0.00049 17.8 0.0 10 164-173 4-14 (29)
25 2elx_A Zinc finger protein 406 25.5 18 0.00061 18.3 0.3 10 164-173 9-19 (35)
26 2lvr_A Zinc finger and BTB dom 31.4 15 0.00051 17.7 0.0 10 164-173 5-15 (30)
27 2elr_A Zinc finger protein 406 25.0 24 0.00081 17.9 0.8 11 163-173 10-21 (36)
28 2elm_A Zinc finger protein 406 23.4 19 0.00065 18.9 0.2 10 164-173 11-21 (37)
29 1sp2_A SP1F2; zinc finger, tra 22.3 29 0.001 17.0 0.9 10 164-173 4-16 (31)
30 1srk_A Zinc finger protein ZFP 21.8 23 0.00079 17.9 0.3 10 164-173 9-19 (35)
31 2elp_A Zinc finger protein 406 20.5 27 0.00092 18.0 0.4 11 163-173 10-21 (37)
No 1
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A
Probab=100.00 E-value=9.8e-38 Score=234.20 Aligned_cols=108 Identities=41% Similarity=0.775 Sum_probs=90.9
Q ss_pred CceeeCHHHHHHHHHHHhcCCCCceEEEEEecCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEcccccccccCcEEE
Q 030533 65 PAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLD 144 (175)
Q Consensus 65 ~~ItIT~~A~~~Lk~l~~~~~~~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~g~~ID 144 (175)
|+|+|||+|+++|++++++++++.+|||+|+++||+|++|.|.++++.+ ++|.+++.+|++|+||+.+++||+|++||
T Consensus 1 M~I~iT~~A~~~l~~ll~~~~~~~~LRv~V~~gGCsG~~y~l~~~~~~~--~~D~v~e~~Gv~v~vd~~s~~~L~g~~ID 78 (118)
T 1r94_A 1 MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLD 78 (118)
T ss_dssp CCCEECHHHHHHHHHHHHHHCCCSEEEEEEEECSSSCEEEEEEEESSCC--TTEEEEEETTEEEEEEGGGHHHHTTCEEE
T ss_pred CceEECHHHHHHHHHHHhhCCCCceEEEEEECCCCCCeEEEEEEccCCC--CCceEEEECCEEEEEEHHHHHHhCCCEEE
Confidence 6899999999999999977655678999999999999999999987654 78999999999999999999999999999
Q ss_pred eecCCCccceEEeCCCCCCCCCCCCCcccc
Q 030533 145 YSDALIGGGFSFKNPNATQTCGCGKSFAAE 174 (175)
Q Consensus 145 y~e~~~g~gF~~~nPn~~~~CGCG~SF~~~ 174 (175)
|+++..+++|+|+|||++.+||||+||+++
T Consensus 79 y~~~~~g~gF~~~NPna~~~CgCG~SF~~~ 108 (118)
T 1r94_A 79 FVKEGLNEGFKFTNPNVKDECGCGESFKLA 108 (118)
T ss_dssp EEEETTEEEEEEECTTCCC-----------
T ss_pred EEcCCCcCceEEeCCCCCCCCCCCCCcCCC
Confidence 999999999999999999999999999874
No 2
>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1
Probab=100.00 E-value=2.9e-37 Score=233.54 Aligned_cols=109 Identities=42% Similarity=0.816 Sum_probs=87.9
Q ss_pred CCceeeCHHHHHHHHHHHhcCCC-CceEEEEEecCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEcccccccccCcE
Q 030533 64 KPAILLTEKALKHLSKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQ 142 (175)
Q Consensus 64 ~~~ItIT~~A~~~Lk~l~~~~~~-~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~g~~ 142 (175)
+|+|+|||+|+++|++++++++. +.+|||+|+++||+|++|.|.|+++.+ ++|.+++.+|++|+||+.+++||+|++
T Consensus 7 ~m~I~iT~~A~~~l~~ll~~~~~~~~~LRv~V~~gGCsG~~y~l~~~~~~~--~~D~v~e~~Gv~v~VD~~s~~~L~G~~ 84 (124)
T 1nwb_A 7 QFIFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVE--EGDHVFEYDGVKVVIDPFSMPYVNGAE 84 (124)
T ss_dssp CCCCEECHHHHHHHHHHHHTTTCSSCEEEECCCCCCTTCCCCCCCEECSCC--SSCCCCCCSSSEEEECTTTGGGSTTCE
T ss_pred CceEEECHHHHHHHHHHHhhCCCCCceEEEEEEcCCCCCcEEEEEEccCCC--CCceEEEeCCEEEEEehHHHHHhCCCE
Confidence 47899999999999999987643 568999999999999999999998754 789999999999999999999999999
Q ss_pred EEeecCCCccceEEeCCCCCCCCCCCCCcccc
Q 030533 143 LDYSDALIGGGFSFKNPNATQTCGCGKSFAAE 174 (175)
Q Consensus 143 IDy~e~~~g~gF~~~nPn~~~~CGCG~SF~~~ 174 (175)
|||+++..+++|+|+|||++.+||||+||+++
T Consensus 85 IDy~~~~~g~gF~~~NPna~~~CgCG~SF~~~ 116 (124)
T 1nwb_A 85 LDYVVDFMGGGFTIRNPNATGSCGCGSSFSCG 116 (124)
T ss_dssp EEEEEETTEEEEEEECC---------------
T ss_pred EEEEcCCCcceEEEeCCCCCcCCCCCCCcCCC
Confidence 99999999999999999999999999999864
No 3
>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}
Probab=100.00 E-value=3.5e-37 Score=228.93 Aligned_cols=107 Identities=32% Similarity=0.668 Sum_probs=95.7
Q ss_pred ceeeCHHHHHHHHHHHhcC-CC--CceEEEEEecCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEcccccccccCcE
Q 030533 66 AILLTEKALKHLSKMRSER-SE--DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQ 142 (175)
Q Consensus 66 ~ItIT~~A~~~Lk~l~~~~-~~--~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~g~~ 142 (175)
||+|||+|+++|+++++++ +. +.+|||+|+++||+|++|.|.|+++.+ ++|.+++.+|++|+||+.+++||+|++
T Consensus 1 mi~iT~~A~~~l~~ll~~~~~~~~~~~lRv~v~~gGCsG~~y~l~~~~~~~--~~D~v~e~~Gv~v~vd~~s~~~l~g~~ 78 (112)
T 1x0g_A 1 MVELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPK--PTDLLTQSQGWTIAIAAEAAELLRGLR 78 (112)
T ss_dssp CCEECHHHHHHTCCCC----------CEEEEEEEBSSSSEEEEEEECSSCC--TTCEEECSSSCCEEECGGGHHHHTTCE
T ss_pred CeEECHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCCCeEEEEEECcCCC--CCCEEEEeCCEEEEEeHHHHHHhCCCE
Confidence 6999999999999998766 32 468999999999999999999998754 789999999999999999999999999
Q ss_pred EEeecCCCccceEEeCCCCCCCCCCCCCcccc
Q 030533 143 LDYSDALIGGGFSFKNPNATQTCGCGKSFAAE 174 (175)
Q Consensus 143 IDy~e~~~g~gF~~~nPn~~~~CGCG~SF~~~ 174 (175)
|||.++..+++|+|+|||++.+||||+||+++
T Consensus 79 IDy~~~~~g~gF~~~nPna~~~CgCG~SF~~~ 110 (112)
T 1x0g_A 79 VDYIEDLMGGAFRFHNPNASQTCGCGMAFRVS 110 (112)
T ss_dssp EEEEEETTEEEEEEECTTCSEECSSSSEEECC
T ss_pred EEEEecCCCCEEEEeCCCCCcCCCCCCccccC
Confidence 99999999999999999999999999999874
No 4
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=100.00 E-value=2.5e-36 Score=234.34 Aligned_cols=108 Identities=30% Similarity=0.596 Sum_probs=101.2
Q ss_pred CCceeeCHHHHHHHHHHHhcCCCCceEEEEEecCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEcccccccccCcEE
Q 030533 64 KPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQL 143 (175)
Q Consensus 64 ~~~ItIT~~A~~~Lk~l~~~~~~~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~g~~I 143 (175)
+|.|+|||+|+++|++++++++++.+|||+|+++||+|++|.|.|+++.+ ++|.+++.+|++|+||+.+++||+|++|
T Consensus 38 ~m~ItiTe~Aa~~lk~ll~~~~~~~~LRv~V~~gGCsG~~Y~l~l~~~~~--~~D~v~e~~Gv~v~VD~~s~~~L~G~~I 115 (145)
T 2d2a_A 38 WQGLTLTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPD--KDDLLFEHDGAKLFVPLQAMPFIDGTEV 115 (145)
T ss_dssp CCCCEECHHHHHHHHHHHHHSTTCCEEEEEEEEETTTEEEEEEEEESSCC--TTEEEEEETTEEEEEEGGGHHHHTTCEE
T ss_pred cceEEECHHHHHHHHHHHhcCCCCceEEEEEECCCCCCcEEEEEECcCCC--CCCeEEEECCEEEEEeHHHHHhhCCCEE
Confidence 57799999999999999987755678999999999999999999997654 7899999999999999999999999999
Q ss_pred EeecCCCccceEEeCCCCCCCCCCCCCccc
Q 030533 144 DYSDALIGGGFSFKNPNATQTCGCGKSFAA 173 (175)
Q Consensus 144 Dy~e~~~g~gF~~~nPn~~~~CGCG~SF~~ 173 (175)
||+++..+++|+|+|||++.+||||+||++
T Consensus 116 Dy~e~l~g~gF~f~NPna~~~CGCG~SF~v 145 (145)
T 2d2a_A 116 DFVREGLNQIFKFHNPKAQNECGCGESFGV 145 (145)
T ss_dssp EEEEETTEEEEEEECTTTCSCCCCBCEEEC
T ss_pred EEEcCCCcceEEEeCCCCCcccCCCCCccC
Confidence 999999999999999999999999999974
No 5
>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae}
Probab=100.00 E-value=1.1e-36 Score=226.70 Aligned_cols=111 Identities=41% Similarity=0.768 Sum_probs=102.1
Q ss_pred CCCCCceeeCHHHHHHHHHHHhcCC-CCceEEEEEecCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEccccccccc
Q 030533 61 EDLKPAILLTEKALKHLSKMRSERS-EDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLF 139 (175)
Q Consensus 61 ~~~~~~ItIT~~A~~~Lk~l~~~~~-~~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~ 139 (175)
+.+.|+|+|||+|+++|++++++++ ++.+|||+|+++||+|++|.|.++++.+ ++|.+++.+|++|+||+.+++||+
T Consensus 3 ~~~~~~i~iT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGCsG~~y~l~~~~~~~--~~D~v~e~~Gv~v~id~~s~~~l~ 80 (114)
T 2apn_A 3 DDMAVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVN--DGDLTIEKSGVQLVIDPMSLQYLI 80 (114)
T ss_dssp SSSCCSCEECSHHHHHHHHHHHHHTCSSCEEEECCCCSSSSCSCCCEEECCSCC--SSCEEEECSSSEEEECHHHHHHHT
T ss_pred ccCcCcEEECHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCcEEEEEECcCCC--CCCcEEEECCEEEEEehHHHHHhC
Confidence 3466789999999999999987653 4678999999999999999999998754 789999999999999999999999
Q ss_pred CcEEEeecCCCccceEEeCCCCCCCCCCCCCccc
Q 030533 140 GMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAA 173 (175)
Q Consensus 140 g~~IDy~e~~~g~gF~~~nPn~~~~CGCG~SF~~ 173 (175)
|++|||+++..+++|+|+|||++.+||||+||++
T Consensus 81 g~~IDy~~~~~g~~F~~~nPna~~~CgCG~SF~~ 114 (114)
T 2apn_A 81 GGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFSI 114 (114)
T ss_dssp TCEEEEECSSSCCEEEEECHHHHCCCCCCCCSCC
T ss_pred CCEEEEEcCCCcceEEEeCCCCCcCCCCCCCccC
Confidence 9999999999999999999999999999999974
No 6
>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}
Probab=99.94 E-value=8e-27 Score=176.68 Aligned_cols=99 Identities=26% Similarity=0.376 Sum_probs=91.3
Q ss_pred CCCceeeCHHHHHHHHHHHhcCC-CCceEEEEEe--cCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEccccccccc
Q 030533 63 LKPAILLTEKALKHLSKMRSERS-EDLCLRIGVK--QGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLF 139 (175)
Q Consensus 63 ~~~~ItIT~~A~~~Lk~l~~~~~-~~~~LRI~v~--~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~ 139 (175)
.+|+|+||++|+++|++++++++ ++.+|||+|+ ++| |++|.|.|+++ + ++|.+++.+|++|+||+.+++||+
T Consensus 19 ~~m~ItiT~~Aa~~ik~ll~~~~~~~~~LRv~V~~~~gG--G~~Y~l~l~~~-~--~~D~v~e~~Gv~v~VD~~s~~~L~ 93 (125)
T 2k4z_A 19 SHMMFKLTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDG--SIDYRMGFDDL-T--EDDIRLTSEGVEIVIAPDYVSLLD 93 (125)
T ss_dssp CSSCEEECHHHHHHHHHHHHHSSSTTCEEEEEEEECTTS--CEEEEEEEECC-C--SSSCEEECSSCEEECCTTTHHHHT
T ss_pred CCCEEEECHHHHHHHHHHHhhCCCCCceEEEEEEecCCC--CEEEEEEecCC-C--CCceEEEECCEEEEEeHHHHHhhC
Confidence 45889999999999999998764 3578999999 888 99999999988 4 799999999999999999999999
Q ss_pred CcEEEeec-CCCccceEEeCCCCCCCCC
Q 030533 140 GMQLDYSD-ALIGGGFSFKNPNATQTCG 166 (175)
Q Consensus 140 g~~IDy~e-~~~g~gF~~~nPn~~~~CG 166 (175)
|++|||++ +..+++|+|+|||+++.|.
T Consensus 94 G~~IDy~~~~l~g~gF~~~NPna~~~~p 121 (125)
T 2k4z_A 94 QTTLDYVELEPGQFHFIFLNPRDPTYRP 121 (125)
T ss_dssp TEEEEEEEEETTEEEEEEECSSSCSSCC
T ss_pred CCEEEEEeCCCCcCeEEECCCCCCccCC
Confidence 99999999 9999999999999998885
No 7
>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, 10399L structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius} SCOP: b.124.1.1
Probab=99.85 E-value=1.5e-21 Score=148.22 Aligned_cols=96 Identities=16% Similarity=0.159 Sum_probs=85.8
Q ss_pred CCceeeCHHHHHHHHHHHhcCCCCceEEEEEecC-------CCCC-ceeeEEEecccCCCC----CCceeeeCCEEEEEc
Q 030533 64 KPAILLTEKALKHLSKMRSERSEDLCLRIGVKQG-------GCSG-MSYTMEFENRANARP----DDSVIEYDGFVIVCD 131 (175)
Q Consensus 64 ~~~ItIT~~A~~~Lk~l~~~~~~~~~LRI~v~~~-------GCsG-~~y~l~l~~~~~~~~----~D~vie~~Gi~v~iD 131 (175)
.|.|+|||+|+++|++++.+++...+||+. +++ ||+| +.|.|.|+++.+ + +|.+++.+|++|+||
T Consensus 2 ~M~ItlT~~A~~~l~~~l~~~~~~l~Lr~~-dg~g~y~k~ggCsg~~~Y~l~~v~~~~--~~~~~~D~~~e~~g~~v~vd 78 (128)
T 2p2e_A 2 SLKITVTDDAAKKLQRYTDDSNAVLLLDFD-DGVGALSKVGVCSLNSDFRILVVSKDM--DYKKDYNEVIDSNIGKFYYK 78 (128)
T ss_dssp -CEEEECHHHHHHHHHHHTCTTEEEEEEEC-SSCSGGGGSSCCCCSCCEEEEEEETTS--SCTTTSCEEEEETTSCEEEC
T ss_pred ccEEEECHHHHHHHHHHHhcCCceEEEEEe-CCCCccccCCCCCCCCEEEEEEeccCC--CCCCCCCEEEEeCCEEEEEC
Confidence 477999999999999999887544689999 666 7999 599999998765 5 799999999999999
Q ss_pred ccccccccC-cEEEeecCC----Cccc-eEEeCCCCC
Q 030533 132 PKSLLFLFG-MQLDYSDAL----IGGG-FSFKNPNAT 162 (175)
Q Consensus 132 ~~s~~~L~g-~~IDy~e~~----~g~g-F~~~nPn~~ 162 (175)
+.++.||+| ++|||+++. .+++ |.|.|||++
T Consensus 79 ~~s~~~ldgg~~iDy~~~~~~l~L~s~~f~~~NPN~~ 115 (128)
T 2p2e_A 79 GYSKMYMDDNMKISLNTNNSLLRLTGDNSGELMPALS 115 (128)
T ss_dssp GGGGGGSCSEEEEEECSSSSCEEEEETTTEEEEEEEC
T ss_pred cchHHhhCCCeEEEEeCCCceEEecCCccEEECCCCe
Confidence 999999996 999999998 8999 999999986
No 8
>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural GEN protein structure initiative; 2.04A {Lactobacillus acidophilus}
Probab=99.78 E-value=7e-20 Score=141.27 Aligned_cols=90 Identities=21% Similarity=0.354 Sum_probs=72.7
Q ss_pred CCceeeCHHHHHHHHHHHhcCCCCceE-------EEEEecCCCC-CceeeEEEecccCCCCC-CceeeeC-CEEEEEccc
Q 030533 64 KPAILLTEKALKHLSKMRSERSEDLCL-------RIGVKQGGCS-GMSYTMEFENRANARPD-DSVIEYD-GFVIVCDPK 133 (175)
Q Consensus 64 ~~~ItIT~~A~~~Lk~l~~~~~~~~~L-------RI~v~~~GCs-G~~y~l~l~~~~~~~~~-D~vie~~-Gi~v~iD~~ 133 (175)
.|.|+|||+|+++|++++..++ ..+| |+.++++||+ |+.|.|.|+++.. ++ |.+++.+ |++|+||+.
T Consensus 3 ~M~ItlTd~Aa~~ik~~l~~~~-~l~L~~~Dgv~r~~v~gGGCSiG~~Y~l~~~~e~~--~dyD~~~e~~gGv~v~Vd~~ 79 (141)
T 2qgo_A 3 LLNIKFTDNAVDYLKRREILDK-ILILITDDGGGKYSIQGGSCSMGAHFSIIWLDKVD--PDYPVKIANEQNVKIYTSDF 79 (141)
T ss_dssp -CBEEECHHHHHHHHHTTCTTS-EEEEEECSSCSTTCC---------CEEEEEESSCC--TTCCEECBCSSCCEEEECHH
T ss_pred ceEEEECHHHHHHHHHHHhhcc-ceeeecCCCceEEEEeCccCCCCCEEEEEEeecCC--CCCCEEEEeCCCEEEEECch
Confidence 5789999999999999998764 6789 9999999999 9999999998765 78 9999999 599999999
Q ss_pred cccccc-CcEEEeecCCCccceEEeCCC
Q 030533 134 SLLFLF-GMQLDYSDALIGGGFSFKNPN 160 (175)
Q Consensus 134 s~~~L~-g~~IDy~e~~~g~gF~~~nPn 160 (175)
+++||+ |++|||+++ .|.+++|.
T Consensus 80 sl~yLd~G~~IDy~~~----~l~Lks~s 103 (141)
T 2qgo_A 80 DKTMLGPNMVMDYNAG----SLSLSSDE 103 (141)
T ss_dssp HHTTSCSSEEEEEETT----EEEEEETT
T ss_pred HHHHhcCCCEEeEECC----EEEEcCCC
Confidence 999999 999999964 78888765
No 9
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=35.89 E-value=12 Score=17.66 Aligned_cols=10 Identities=50% Similarity=1.361 Sum_probs=7.3
Q ss_pred CCC-CCCCccc
Q 030533 164 TCG-CGKSFAA 173 (175)
Q Consensus 164 ~CG-CG~SF~~ 173 (175)
.|. ||++|..
T Consensus 3 ~C~~C~k~f~~ 13 (27)
T 1znf_A 3 KCGLCERSFVE 13 (27)
T ss_dssp BCSSSCCBCSS
T ss_pred cCCCCCCcCCC
Confidence 465 9999863
No 10
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=39.79 E-value=8.8 Score=18.24 Aligned_cols=10 Identities=50% Similarity=1.288 Sum_probs=7.4
Q ss_pred CCC-CCCCccc
Q 030533 164 TCG-CGKSFAA 173 (175)
Q Consensus 164 ~CG-CG~SF~~ 173 (175)
.|. ||++|..
T Consensus 4 ~C~~C~k~f~~ 14 (26)
T 2lvu_A 4 VCERCGKRFVQ 14 (26)
Confidence 465 9999864
No 11
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=33.50 E-value=14 Score=17.64 Aligned_cols=10 Identities=40% Similarity=1.122 Sum_probs=7.6
Q ss_pred CCC-CCCCccc
Q 030533 164 TCG-CGKSFAA 173 (175)
Q Consensus 164 ~CG-CG~SF~~ 173 (175)
.|. ||++|..
T Consensus 4 ~C~~C~~~f~~ 14 (29)
T 1ard_A 4 VCEVCTRAFAR 14 (29)
T ss_dssp BCTTTCCBCSS
T ss_pred ECCCCCcccCC
Confidence 575 9999964
No 12
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=33.26 E-value=14 Score=17.86 Aligned_cols=10 Identities=40% Similarity=1.378 Sum_probs=7.5
Q ss_pred CCC-CCCCccc
Q 030533 164 TCG-CGKSFAA 173 (175)
Q Consensus 164 ~CG-CG~SF~~ 173 (175)
.|. ||++|..
T Consensus 4 ~C~~C~k~f~~ 14 (30)
T 1paa_A 4 ACGLCNRAFTR 14 (30)
T ss_dssp BCTTTCCBCSS
T ss_pred CCcccCcccCC
Confidence 575 9999964
No 13
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=31.66 E-value=17 Score=17.18 Aligned_cols=10 Identities=40% Similarity=1.046 Sum_probs=7.5
Q ss_pred CCC-CCCCccc
Q 030533 164 TCG-CGKSFAA 173 (175)
Q Consensus 164 ~CG-CG~SF~~ 173 (175)
.|. ||++|..
T Consensus 4 ~C~~C~~~f~~ 14 (29)
T 2m0e_A 4 KCPHCDKKFNQ 14 (29)
T ss_dssp CCSSCCCCCCT
T ss_pred cCCCCCcccCC
Confidence 566 9999964
No 14
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=31.46 E-value=12 Score=17.92 Aligned_cols=10 Identities=20% Similarity=0.697 Sum_probs=7.3
Q ss_pred CCC-CCCCccc
Q 030533 164 TCG-CGKSFAA 173 (175)
Q Consensus 164 ~CG-CG~SF~~ 173 (175)
.|. ||++|..
T Consensus 5 ~C~~C~k~f~~ 15 (27)
T 2kvh_A 5 SCSLCPQRSRD 15 (27)
T ss_dssp ECSSSSCEESS
T ss_pred cCCCcChhhCC
Confidence 465 9998863
No 15
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=29.62 E-value=18 Score=17.22 Aligned_cols=10 Identities=30% Similarity=0.567 Sum_probs=7.5
Q ss_pred CCC-CCCCccc
Q 030533 164 TCG-CGKSFAA 173 (175)
Q Consensus 164 ~CG-CG~SF~~ 173 (175)
.|. ||++|..
T Consensus 4 ~C~~C~k~f~~ 14 (30)
T 1klr_A 4 QCQYCEFRSAD 14 (30)
T ss_dssp CCSSSSCCCSC
T ss_pred cCCCCCCccCC
Confidence 565 9999864
No 16
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.52 E-value=14 Score=17.71 Aligned_cols=10 Identities=50% Similarity=1.411 Sum_probs=7.2
Q ss_pred CCC-CCCCccc
Q 030533 164 TCG-CGKSFAA 173 (175)
Q Consensus 164 ~CG-CG~SF~~ 173 (175)
.|. ||++|..
T Consensus 5 ~C~~C~~~f~~ 15 (30)
T 2m0d_A 5 QCDYCGRSFSD 15 (30)
T ss_dssp ECTTTCCEESC
T ss_pred cCCCCCcccCC
Confidence 465 9998863
No 17
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=28.88 E-value=15 Score=17.56 Aligned_cols=10 Identities=40% Similarity=0.969 Sum_probs=7.1
Q ss_pred CCC-CCCCccc
Q 030533 164 TCG-CGKSFAA 173 (175)
Q Consensus 164 ~CG-CG~SF~~ 173 (175)
.|. ||++|..
T Consensus 4 ~C~~C~k~f~~ 14 (29)
T 1rik_A 4 ACPECPKRFMR 14 (29)
T ss_dssp ECSSSSCEESC
T ss_pred cCCCCCchhCC
Confidence 465 8998864
No 18
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=28.40 E-value=15 Score=18.68 Aligned_cols=10 Identities=40% Similarity=0.969 Sum_probs=7.6
Q ss_pred CCC-CCCCccc
Q 030533 164 TCG-CGKSFAA 173 (175)
Q Consensus 164 ~CG-CG~SF~~ 173 (175)
.|. ||++|..
T Consensus 4 ~C~~C~k~f~~ 14 (32)
T 2kfq_A 4 ACPACPKRFMR 14 (32)
T ss_dssp SSSSSCTTHHH
T ss_pred CCCCCCcccCC
Confidence 576 9999863
No 19
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.38 E-value=15 Score=17.57 Aligned_cols=10 Identities=50% Similarity=1.378 Sum_probs=7.2
Q ss_pred CCC-CCCCccc
Q 030533 164 TCG-CGKSFAA 173 (175)
Q Consensus 164 ~CG-CG~SF~~ 173 (175)
.|. ||++|..
T Consensus 5 ~C~~C~k~f~~ 15 (28)
T 2kvf_A 5 SCSVCGKRFSL 15 (28)
T ss_dssp ECSSSCCEESC
T ss_pred cCCCCCcccCC
Confidence 465 9998864
No 20
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=28.04 E-value=20 Score=18.44 Aligned_cols=11 Identities=36% Similarity=0.948 Sum_probs=8.2
Q ss_pred CCCC-CCCCccc
Q 030533 163 QTCG-CGKSFAA 173 (175)
Q Consensus 163 ~~CG-CG~SF~~ 173 (175)
-.|. ||++|..
T Consensus 12 ~~C~~C~k~f~~ 23 (37)
T 1p7a_A 12 FQCPDCDRSFSR 23 (37)
T ss_dssp BCCTTTCCCBSS
T ss_pred ccCCCCCcccCc
Confidence 3676 9999964
No 21
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=26.77 E-value=22 Score=18.16 Aligned_cols=10 Identities=40% Similarity=0.969 Sum_probs=7.6
Q ss_pred CCC-CCCCccc
Q 030533 164 TCG-CGKSFAA 173 (175)
Q Consensus 164 ~CG-CG~SF~~ 173 (175)
.|. ||++|..
T Consensus 4 ~C~~C~k~F~~ 14 (33)
T 1rim_A 4 ACPECPKRFMR 14 (33)
T ss_dssp CCSSSCCCCSS
T ss_pred cCCCCCchhCC
Confidence 575 9999964
No 22
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.27 E-value=17 Score=17.28 Aligned_cols=10 Identities=50% Similarity=1.341 Sum_probs=7.0
Q ss_pred CCC-CCCCccc
Q 030533 164 TCG-CGKSFAA 173 (175)
Q Consensus 164 ~CG-CG~SF~~ 173 (175)
.|. ||++|..
T Consensus 4 ~C~~C~k~f~~ 14 (29)
T 2m0f_A 4 KCRECGKQFTT 14 (29)
T ss_dssp ECTTTSCEESC
T ss_pred cCCCCCCccCC
Confidence 465 8998863
No 23
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.04 E-value=12 Score=18.11 Aligned_cols=10 Identities=20% Similarity=0.693 Sum_probs=7.2
Q ss_pred CCC-CCCCccc
Q 030533 164 TCG-CGKSFAA 173 (175)
Q Consensus 164 ~CG-CG~SF~~ 173 (175)
.|. ||++|..
T Consensus 5 ~C~~C~k~f~~ 15 (27)
T 2kvg_A 5 RCPLCRAGCPS 15 (27)
T ss_dssp EETTTTEEESC
T ss_pred CCCCCCcccCC
Confidence 465 9998863
No 24
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=31.72 E-value=14 Score=17.78 Aligned_cols=10 Identities=50% Similarity=1.265 Sum_probs=7.3
Q ss_pred CCC-CCCCccc
Q 030533 164 TCG-CGKSFAA 173 (175)
Q Consensus 164 ~CG-CG~SF~~ 173 (175)
.|. ||++|..
T Consensus 4 ~C~~C~k~f~~ 14 (29)
T 2lvt_A 4 QCVMCGKAFTQ 14 (29)
Confidence 465 9999864
No 25
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.51 E-value=18 Score=18.28 Aligned_cols=10 Identities=40% Similarity=1.019 Sum_probs=7.6
Q ss_pred CCC-CCCCccc
Q 030533 164 TCG-CGKSFAA 173 (175)
Q Consensus 164 ~CG-CG~SF~~ 173 (175)
.|. ||++|..
T Consensus 9 ~C~~C~k~f~~ 19 (35)
T 2elx_A 9 VCALCLKKFVS 19 (35)
T ss_dssp ECSSSCCEESS
T ss_pred ECCCCcchhCC
Confidence 576 9999864
No 26
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=31.39 E-value=15 Score=17.72 Aligned_cols=10 Identities=40% Similarity=0.982 Sum_probs=7.3
Q ss_pred CCC-CCCCccc
Q 030533 164 TCG-CGKSFAA 173 (175)
Q Consensus 164 ~CG-CG~SF~~ 173 (175)
.|. ||++|..
T Consensus 5 ~C~~C~k~f~~ 15 (30)
T 2lvr_A 5 VCIHCQRQFAD 15 (30)
Confidence 565 9998863
No 27
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.01 E-value=24 Score=17.94 Aligned_cols=11 Identities=45% Similarity=1.229 Sum_probs=8.4
Q ss_pred CCCC-CCCCccc
Q 030533 163 QTCG-CGKSFAA 173 (175)
Q Consensus 163 ~~CG-CG~SF~~ 173 (175)
-.|. ||++|..
T Consensus 10 ~~C~~C~k~f~~ 21 (36)
T 2elr_A 10 HLCDMCGKKFKS 21 (36)
T ss_dssp CBCTTTCCBCSS
T ss_pred eecCcCCCCcCc
Confidence 4676 9999964
No 28
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.41 E-value=19 Score=18.87 Aligned_cols=10 Identities=30% Similarity=0.574 Sum_probs=7.4
Q ss_pred CCC-CCCCccc
Q 030533 164 TCG-CGKSFAA 173 (175)
Q Consensus 164 ~CG-CG~SF~~ 173 (175)
.|. ||++|..
T Consensus 11 ~C~~C~k~f~~ 21 (37)
T 2elm_A 11 YCSQCHYSSIT 21 (37)
T ss_dssp ECSSSSCEEEC
T ss_pred ECCCCCcccCC
Confidence 565 9999864
No 29
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=22.35 E-value=29 Score=16.95 Aligned_cols=10 Identities=50% Similarity=1.165 Sum_probs=7.8
Q ss_pred CC---CCCCCccc
Q 030533 164 TC---GCGKSFAA 173 (175)
Q Consensus 164 ~C---GCG~SF~~ 173 (175)
.| .||++|..
T Consensus 4 ~C~~~~C~k~f~~ 16 (31)
T 1sp2_A 4 MCTWSYCGKRFTR 16 (31)
T ss_dssp BCCSTTCCCBCSS
T ss_pred CCcCCCCCcccCC
Confidence 57 59999964
No 30
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=21.84 E-value=23 Score=17.92 Aligned_cols=10 Identities=30% Similarity=0.899 Sum_probs=7.5
Q ss_pred CCC-CCCCccc
Q 030533 164 TCG-CGKSFAA 173 (175)
Q Consensus 164 ~CG-CG~SF~~ 173 (175)
.|. ||++|..
T Consensus 9 ~C~~C~k~f~~ 19 (35)
T 1srk_A 9 VCRICLSAFTT 19 (35)
T ss_dssp ECSSSCCEESS
T ss_pred eCCCCCcccCC
Confidence 575 9998864
No 31
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.49 E-value=27 Score=17.96 Aligned_cols=11 Identities=27% Similarity=0.646 Sum_probs=7.9
Q ss_pred CCCC-CCCCccc
Q 030533 163 QTCG-CGKSFAA 173 (175)
Q Consensus 163 ~~CG-CG~SF~~ 173 (175)
-.|. ||++|..
T Consensus 10 ~~C~~C~k~f~~ 21 (37)
T 2elp_A 10 MKCPYCDFYFMK 21 (37)
T ss_dssp EECSSSSCEECS
T ss_pred eECCCCChhhcc
Confidence 3576 9998864
Done!