BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030537
(175 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GWR3|QKIL5_ARATH KH domain-containing protein At1g09660 OS=Arabidopsis thaliana
GN=At1g09660 PE=2 SV=1
Length = 298
Score = 242 bits (617), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 123/176 (69%), Positives = 145/176 (82%), Gaps = 10/176 (5%)
Query: 4 FQAPPSMGWQGLPGIPTAPVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTE 63
F+ P +GW G+PG+P P+VK+VIRLDVPVDKYP+ +NFVGRILGPRGNSLKRVE T
Sbjct: 125 FRGPSPVGWIGMPGLPNPPIVKKVIRLDVPVDKYPS-YNFVGRILGPRGNSLKRVELATH 183
Query: 64 CTVFIRGQSSVKDSLKEGKIR----YEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENL 119
C VFIRG+ SVKD++KE K++ YEHL EPLHVL EAE PEDIINSRL+HAV LE+L
Sbjct: 184 CRVFIRGRGSVKDTVKEEKLKGKPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESL 243
Query: 120 LKPVDESLDHYKKQQLREFATLNGTLREE--SPSMSPSMSPSMWPFNSAGMKRAKT 173
LKP+DES+DHYK++QL+E A LNGTLREE SPS+SP +SPSM PFNS KRAKT
Sbjct: 244 LKPMDESMDHYKREQLKELAALNGTLREESPSPSLSPCLSPSMSPFNS---KRAKT 296
>sp|Q75GR5|SPIN1_ORYSJ KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica
GN=SPIN1 PE=1 SV=1
Length = 281
Score = 210 bits (534), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 109/169 (64%), Positives = 129/169 (76%), Gaps = 10/169 (5%)
Query: 9 SMGWQGLPGIPTAPVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFI 68
SM WQG P P++ VVK+++RLDVPVD YPN FNFVGRILGPRGNSLKRVEA T C VFI
Sbjct: 117 SMDWQGAPPSPSSHVVKKILRLDVPVDSYPN-FNFVGRILGPRGNSLKRVEASTGCRVFI 175
Query: 69 RGQSSVKDSLKEGKIR----YEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVD 124
RG+ S+KD KE K+R YEHL++PLH+L EAEFP II++RL HA ++E LLKPVD
Sbjct: 176 RGKGSIKDPGKEDKLRGKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVD 235
Query: 125 ESLDHYKKQQLREFATLNGTLREESPSMSPSMSPSMWPFNSAGMKRAKT 173
ES D YK+QQLRE A LN TLRE+SP S+ PF++ GMKRAKT
Sbjct: 236 ESQDFYKRQQLRELAMLNSTLREDSPHPG-----SVSPFSNGGMKRAKT 279
>sp|Q0WLR1|QKIL1_ARATH KH domain-containing protein At4g26480 OS=Arabidopsis thaliana
GN=At4g26480 PE=2 SV=1
Length = 308
Score = 202 bits (514), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 105/171 (61%), Positives = 128/171 (74%), Gaps = 9/171 (5%)
Query: 8 PSMGWQGLPGIPTAPVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVF 67
P+ W PG + +VKR IR+D+PVDKYPN +NFVGR+LGPRGNSLKRVEA T+C V
Sbjct: 142 PAPNWLNSPGSSSGLIVKRTIRVDIPVDKYPN-YNFVGRLLGPRGNSLKRVEASTDCRVL 200
Query: 68 IRGQSSVKDSLKE----GKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPV 123
IRG+ S+KD +KE GK YEHLNEPLH+L EAE P +I+++RL A IL++LL PV
Sbjct: 201 IRGRGSIKDPIKEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPV 260
Query: 124 DESLDHYKKQQLREFATLNGTLREESPSMSPSMSPSMWPFNSAGMKRAKTR 174
+E+ D YKKQQLRE A LNG+LREE MS S+S P+NS GMKRAKTR
Sbjct: 261 EETHDFYKKQQLRELALLNGSLREEGSPMSGSIS----PYNSLGMKRAKTR 307
>sp|Q9FKT4|QKIL2_ARATH KH domain-containing protein At5g56140 OS=Arabidopsis thaliana
GN=At5g56140 PE=2 SV=1
Length = 315
Score = 200 bits (508), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 104/171 (60%), Positives = 125/171 (73%), Gaps = 9/171 (5%)
Query: 8 PSMGWQGLPGIPTAPVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVF 67
P W PG + + KR IR+D+PVD YPN FNFVGR+LGPRGNSLKRVEA T+C V
Sbjct: 148 PGPNWLNSPGSSSGLIAKRTIRVDIPVDNYPN-FNFVGRLLGPRGNSLKRVEASTDCRVL 206
Query: 68 IRGQSSVKDSLKE----GKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPV 123
IRG+ S+KD +KE GK YEHLNEPLH+L EAE P +I+++RL A IL++LL P+
Sbjct: 207 IRGRGSIKDPIKEEMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPM 266
Query: 124 DESLDHYKKQQLREFATLNGTLREESPSMSPSMSPSMWPFNSAGMKRAKTR 174
+E+ D YKKQQLRE A LNGTLREE MS S+S P+NS GMKRAKTR
Sbjct: 267 EETHDMYKKQQLRELALLNGTLREEGSPMSGSVS----PYNSLGMKRAKTR 313
>sp|Q8GYR4|QKIL4_ARATH KH domain-containing protein At3g08620 OS=Arabidopsis thaliana
GN=At3g08620 PE=2 SV=1
Length = 283
Score = 194 bits (492), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/171 (59%), Positives = 124/171 (72%), Gaps = 9/171 (5%)
Query: 9 SMGWQGLPGIPTAPVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFI 68
+M WQG P P++ VKR++RLD+PVD YPN FNFVGR+LGPRGNSLKRVEA T C V+I
Sbjct: 118 AMEWQGAPASPSSYPVKRILRLDLPVDTYPN-FNFVGRLLGPRGNSLKRVEATTGCRVYI 176
Query: 69 RGQSSVKDSLKEGKIR----YEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVD 124
RG+ S+KD KE K++ YEHLNE LH+L EA+ P DI++ +L A I+E L+KPVD
Sbjct: 177 RGKGSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVD 236
Query: 125 ESLDHYKKQQLREFATLNGTLREESPSMSPSMSPSMWPFNSAGMKRAKTRR 175
ES D+ K+QQLRE A LN LRE SP S S+S PFNS MKR KT R
Sbjct: 237 ESQDYIKRQQLRELALLNSNLRENSPGPSGSVS----PFNSNAMKRPKTGR 283
>sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610 OS=Arabidopsis thaliana
GN=At2g38610 PE=1 SV=1
Length = 286
Score = 193 bits (490), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 105/170 (61%), Positives = 123/170 (72%), Gaps = 9/170 (5%)
Query: 9 SMGWQGLPGIPTAPVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFI 68
+M WQG PG P++ VKR++RL++PVD YPN FNFVGR+LGPRGNSLKRVEA T C VFI
Sbjct: 119 TMDWQGAPGSPSSYTVKRILRLEIPVDNYPN-FNFVGRLLGPRGNSLKRVEATTGCRVFI 177
Query: 69 RGQSSVKDSLKEGKIR----YEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVD 124
RG+ S+KD KE K+R YEHLNE LH+L EA+ P I+ RL A I+E LLKPVD
Sbjct: 178 RGKGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVD 237
Query: 125 ESLDHYKKQQLREFATLN-GTLREESPSMSPSMSPSMWPFNSAGMKRAKT 173
ES D K+QQLRE A LN LREESP PS S+ PFNS+G KR KT
Sbjct: 238 ESQDFIKRQQLRELALLNSNNLREESP--GPSGGGSVSPFNSSG-KRPKT 284
>sp|Q32NN2|QKIA_XENLA Protein quaking-A OS=Xenopus laevis GN=qki-a PE=1 SV=2
Length = 341
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 92/146 (63%), Gaps = 8/146 (5%)
Query: 21 APVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKE 80
P+V+ +L VPV +YP+ FNFVGRILGPRG + K++EA T C + +RG+ S++D KE
Sbjct: 78 GPIVQLQEKLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKE 136
Query: 81 ----GKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLR 136
GK +EHLNE LHVL E ++ +L AV ++ LL P E D KK QL
Sbjct: 137 EQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMQLM 196
Query: 137 EFATLNGTLRE---ESPSMSPSMSPS 159
E A LNGT R+ +SP+++ S++ +
Sbjct: 197 ELAILNGTYRDANLKSPALAFSLAAT 222
>sp|Q6IRN2|QKIB_XENLA Protein quaking-B OS=Xenopus laevis GN=qki-b PE=1 SV=1
Length = 342
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 92/146 (63%), Gaps = 8/146 (5%)
Query: 21 APVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKE 80
P+V+ +L VPV +YP+ FNFVGRILGPRG + K++EA T C + +RG+ S++D KE
Sbjct: 78 GPIVQLQEKLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKE 136
Query: 81 ----GKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLR 136
GK +EHLNE LHVL E ++ +L AV ++ LL P E D KK QL
Sbjct: 137 EQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLM 196
Query: 137 EFATLNGTLRE---ESPSMSPSMSPS 159
E A LNGT R+ +SP+++ S++ +
Sbjct: 197 ELAILNGTYRDANLKSPALAFSLAAT 222
>sp|Q5W9D5|QKI_PIG Protein quaking OS=Sus scrofa GN=QKI PE=2 SV=1
Length = 341
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 8/144 (5%)
Query: 21 APVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKE 80
P+V+ +L VPV +YP+ FNFVGRILGPRG + K++EA T C + +RG+ S++D KE
Sbjct: 77 GPIVQLQEKLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKE 135
Query: 81 ----GKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLR 136
GK +EHLNE LHVL E ++ +L AV ++ LL P E D KK QL
Sbjct: 136 EQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLM 195
Query: 137 EFATLNGTLRE---ESPSMSPSMS 157
E A LNGT R+ +SP+++ S++
Sbjct: 196 ELAILNGTYRDANIKSPALAFSLA 219
>sp|Q9QYS9|QKI_MOUSE Protein quaking OS=Mus musculus GN=Qki PE=1 SV=1
Length = 341
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 8/144 (5%)
Query: 21 APVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKE 80
P+V+ +L VPV +YP+ FNFVGRILGPRG + K++EA T C + +RG+ S++D KE
Sbjct: 77 GPIVQLQEKLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKE 135
Query: 81 ----GKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLR 136
GK +EHLNE LHVL E ++ +L AV ++ LL P E D KK QL
Sbjct: 136 EQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLM 195
Query: 137 EFATLNGTLRE---ESPSMSPSMS 157
E A LNGT R+ +SP+++ S++
Sbjct: 196 ELAILNGTYRDANIKSPALAFSLA 219
>sp|Q96PU8|QKI_HUMAN Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1
Length = 341
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 8/144 (5%)
Query: 21 APVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKE 80
P+V+ +L VPV +YP+ FNFVGRILGPRG + K++EA T C + +RG+ S++D KE
Sbjct: 77 GPIVQLQEKLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKE 135
Query: 81 ----GKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLR 136
GK +EHLNE LHVL E ++ +L AV ++ LL P E D KK QL
Sbjct: 136 EQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLM 195
Query: 137 EFATLNGTLRE---ESPSMSPSMS 157
E A LNGT R+ +SP+++ S++
Sbjct: 196 ELAILNGTYRDANIKSPALAFSLA 219
>sp|Q5W9D6|QKI_HORSE Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1
Length = 341
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 8/144 (5%)
Query: 21 APVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKE 80
P+V+ +L VPV +YP+ FNFVGRILGPRG + K++EA T C + +RG+ S++D KE
Sbjct: 77 GPIVQLQEKLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKE 135
Query: 81 ----GKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLR 136
GK +EHLNE LHVL E ++ +L AV ++ LL P E D KK QL
Sbjct: 136 EQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLM 195
Query: 137 EFATLNGTLRE---ESPSMSPSMS 157
E A LNGT R+ +SP+++ S++
Sbjct: 196 ELAILNGTYRDANIKSPALAFSLA 219
>sp|Q7JJZ8|QKI_FELCA Protein quaking OS=Felis catus GN=QKI PE=2 SV=1
Length = 341
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 8/144 (5%)
Query: 21 APVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKE 80
P+V+ +L VPV +YP+ FNFVGRILGPRG + K++EA T C + +RG+ S++D KE
Sbjct: 77 GPIVQLQEKLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKE 135
Query: 81 ----GKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLR 136
GK +EHLNE LHVL E ++ +L AV ++ LL P E D KK QL
Sbjct: 136 EQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLM 195
Query: 137 EFATLNGTLRE---ESPSMSPSMS 157
E A LNGT R+ +SP+++ S++
Sbjct: 196 ELAILNGTYRDANIKSPALAFSLA 219
>sp|Q9GMY1|QKI_CANFA Protein quaking OS=Canis familiaris GN=QKI PE=2 SV=1
Length = 341
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 8/144 (5%)
Query: 21 APVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKE 80
P+V+ +L VPV +YP+ FNFVGRILGPRG + K++EA T C + +RG+ S++D KE
Sbjct: 77 GPIVQLQEKLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKE 135
Query: 81 ----GKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLR 136
GK +EHLNE LHVL E ++ +L AV ++ LL P E D KK QL
Sbjct: 136 EQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLM 195
Query: 137 EFATLNGTLRE---ESPSMSPSMS 157
E A LNGT R+ +SP+++ S++
Sbjct: 196 ELAILNGTYRDANIKSPALAFSLA 219
>sp|Q5W9D7|QKI_BOVIN Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1
Length = 341
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 8/144 (5%)
Query: 21 APVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKE 80
P+V+ +L VPV +YP+ FNFVGRILGPRG + K++EA T C + +RG+ S++D KE
Sbjct: 77 GPIVQLQEKLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKE 135
Query: 81 ----GKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLR 136
GK +EHLNE LHVL E ++ +L AV ++ LL P E D KK QL
Sbjct: 136 EQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLM 195
Query: 137 EFATLNGTLRE---ESPSMSPSMS 157
E A LNGT R+ +SP+++ S++
Sbjct: 196 ELAILNGTYRDANIKSPALAFSLA 219
>sp|Q91XU1|QKI_RAT Protein quaking OS=Rattus norvegicus GN=Qki PE=1 SV=2
Length = 341
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 8/144 (5%)
Query: 21 APVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKE 80
P+V+ +L VPV +YP+ FNFVGRILGPRG + K++EA T C + +RG+ S++D KE
Sbjct: 77 GPIVQLQEKLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKE 135
Query: 81 ----GKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLR 136
GK +EHLNE LHVL E ++ +L AV ++ LL P E D KK QL
Sbjct: 136 EQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLM 195
Query: 137 EFATLNGTLRE---ESPSMSPSMS 157
E A LNGT R+ +SP+++ S++
Sbjct: 196 ELAILNGTYRDANIKSPALAFSLA 219
>sp|Q9YH18|QKI_CHICK Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2
Length = 340
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 91/145 (62%), Gaps = 8/145 (5%)
Query: 20 TAPVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLK 79
P+V+ +L VPV +YP+ FNFVGRILGPRG + K++EA T C + +RG+ S++D K
Sbjct: 76 VGPIVQLQEKLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKK 134
Query: 80 E----GKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQL 135
E GK +EHLNE LHVL E ++ +L AV ++ LL P E D KK QL
Sbjct: 135 EEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLIPAAEGEDSLKKMQL 194
Query: 136 REFATLNGTLRE---ESPSMSPSMS 157
E A LNGT R+ +SP+++ S++
Sbjct: 195 MELAILNGTYRDANIKSPALAFSLA 219
>sp|Q6P104|QKIB_DANRE Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1
Length = 319
Score = 110 bits (275), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 90/144 (62%), Gaps = 8/144 (5%)
Query: 21 APVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKE 80
P+ + +L VPV +YP+ FNFVGRILGPRG + K++EA T C + +RG+ S++D KE
Sbjct: 77 GPIAQLQEKLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKE 135
Query: 81 ----GKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLR 136
GK +EHLNE LHVL E ++ +L AV ++ LL P E D KK QL
Sbjct: 136 EQNRGKPNWEHLNEDLHVLITVEDSQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLM 195
Query: 137 EFATLNGTLRE---ESPSMSPSMS 157
E A LNGT R+ +SP+++ S++
Sbjct: 196 ELAILNGTYRDANIKSPALAFSLA 219
>sp|Q6P0D0|QKIA_DANRE Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2
Length = 341
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 91/145 (62%), Gaps = 8/145 (5%)
Query: 19 PTAPVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSL 78
P P+V +L VPV +YP+ +NFVGRILGPRG + K++EA T C + +RG+SS++D
Sbjct: 75 PVGPIVHLQEKLFVPVKEYPD-YNFVGRILGPRGLTAKQLEAETGCKIMVRGRSSMRDKK 133
Query: 79 KE----GKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQ 134
KE GK +EHLNE LHVL E + ++ AV ++ LL P E D+ KK Q
Sbjct: 134 KEEQNRGKPNWEHLNEDLHVLITVEDTQTRAEIKMRRAVEEVKKLLVPAAEGEDNLKKMQ 193
Query: 135 LREFATLNGTLRE---ESPSMSPSM 156
L E A LNGT R+ ++P+++ S+
Sbjct: 194 LMELAILNGTYRDTNIKAPTLAFSL 218
>sp|O01367|HOW_DROME Protein held out wings OS=Drosophila melanogaster GN=how PE=1 SV=1
Length = 405
Score = 103 bits (257), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 83/135 (61%), Gaps = 5/135 (3%)
Query: 19 PTAPVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSL 78
P VV ++ VPV ++P+ FNFVGRILGPRG + K++E T C + +RG+ S++D
Sbjct: 130 PEGSVVTMNEKVYVPVREHPD-FNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKK 188
Query: 79 KE----GKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQ 134
KE GK +EHL++ LHVL E E+ +L AVA ++ LL P E D KK+Q
Sbjct: 189 KEDANRGKPNWEHLSDDLHVLITVEDTENRATVKLAQAVAEVQKLLVPQAEGEDELKKRQ 248
Query: 135 LREFATLNGTLREES 149
L E A +NGT R+ +
Sbjct: 249 LMELAIINGTYRDTT 263
>sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppressor gld-1 OS=Caenorhabditis
elegans GN=gld-1 PE=1 SV=1
Length = 463
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 82/132 (62%), Gaps = 5/132 (3%)
Query: 19 PTAPVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSL 78
P ++ ++ VP ++YP+ +NFVGRILGPRG + K++E T C + +RG+ S++D
Sbjct: 198 PAGDMISITEKIYVPKNEYPD-YNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKS 256
Query: 79 KE----GKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQ 134
KE GK +EHL + LHVL + E E+ ++ +L A+ ++ LL P E D K++Q
Sbjct: 257 KESAHRGKANWEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQ 316
Query: 135 LREFATLNGTLR 146
L E A +NGT R
Sbjct: 317 LMELAIINGTYR 328
>sp|Q5VWX1|KHDR2_HUMAN KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Homo sapiens GN=KHDRBS2 PE=1 SV=1
Length = 349
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 79/127 (62%), Gaps = 9/127 (7%)
Query: 24 VKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKE--- 80
+K R+ +PV +YP +FNFVG++LGPRGNSLKR++ T + I G+ S++D KE
Sbjct: 58 IKLSERVLIPVKQYP-KFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEEL 116
Query: 81 ---GKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRE 137
G+ +Y HL++ LHVL E P SR+ HA+ ++ L P + D +++QLRE
Sbjct: 117 RKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRE 174
Query: 138 FATLNGT 144
+ LNG+
Sbjct: 175 LSYLNGS 181
>sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Mus musculus GN=Khdrbs2 PE=1 SV=1
Length = 349
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 79/127 (62%), Gaps = 9/127 (7%)
Query: 24 VKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKE--- 80
+K R+ +PV +YP +FNFVG++LGPRGNSLKR++ T + I G+ S++D KE
Sbjct: 58 IKLSERVLIPVKQYP-KFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEEL 116
Query: 81 ---GKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRE 137
G+ +Y HL++ LHVL E P SR+ HA+ ++ L P + D +++QLRE
Sbjct: 117 RKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRE 174
Query: 138 FATLNGT 144
+ LNG+
Sbjct: 175 LSYLNGS 181
>sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1
Length = 349
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 79/127 (62%), Gaps = 9/127 (7%)
Query: 24 VKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKE--- 80
+K R+ +PV +YP +FNFVG++LGPRGNSLKR++ T + I G+ S++D KE
Sbjct: 58 IKLSERVLIPVKQYP-KFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEEL 116
Query: 81 ---GKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRE 137
G+ +Y HL++ LHVL E P SR+ HA+ ++ L P + D +++QLRE
Sbjct: 117 RKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRE 174
Query: 138 FATLNGT 144
+ LNG+
Sbjct: 175 LSYLNGS 181
>sp|Q08BJ2|KHDR2_DANRE KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Danio rerio GN=khdrbs2 PE=2 SV=1
Length = 346
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 78/127 (61%), Gaps = 9/127 (7%)
Query: 24 VKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKE--- 80
+K R+ +PV +YP +FNFVG++LGPRGNS+KR++ T + I G+ S++D KE
Sbjct: 58 IKLSERVLIPVQQYP-KFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEEL 116
Query: 81 ---GKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRE 137
G+ +Y HL+ LHVL E P SR+ HA+ ++ L P + D +++QLRE
Sbjct: 117 RKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRE 174
Query: 138 FATLNGT 144
+ LNG+
Sbjct: 175 LSYLNGS 181
>sp|Q54BM5|BBP_DICDI Branchpoint-bridging protein OS=Dictyostelium discoideum GN=sf1
PE=3 SV=1
Length = 501
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 81/126 (64%), Gaps = 8/126 (6%)
Query: 22 PVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEG 81
P K+ ++ +P+ +P ++NF+G I+GPRGN+ KR+E + + IRG+ S +D K
Sbjct: 175 PNEKKTRKIYIPIKNHP-EYNFIGLIIGPRGNTQKRMEKESGAKIAIRGKGSSRDG-KPT 232
Query: 82 KIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLREFATL 141
K++++ N+ LHVL A D ++ +LD A ++ L PV+E + +K+QQLRE A +
Sbjct: 233 KLQFQE-NDELHVLLTA----DTVD-QLDKAEVLVREFLIPVEEGKNEHKRQQLRELAEM 286
Query: 142 NGTLRE 147
NGTLRE
Sbjct: 287 NGTLRE 292
>sp|Q0VFL3|KHDR2_XENTR KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Xenopus tropicalis GN=khdrbs2 PE=2 SV=1
Length = 345
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 80/127 (62%), Gaps = 9/127 (7%)
Query: 24 VKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKI 83
+K R+ +PV +YP +FNFVG++LGPRGNSLKR++ T + I G+ S++D +KE ++
Sbjct: 58 IKLSERVLIPVKQYP-KFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKIKEEEL 116
Query: 84 R------YEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRE 137
R + HL++ LHVL E P SR+ HA+ ++ L P + D +++QLRE
Sbjct: 117 RKSDEAKHAHLSDELHVLLEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRE 174
Query: 138 FATLNGT 144
+ LNG+
Sbjct: 175 LSYLNGS 181
>sp|O74555|BBP_SCHPO Branchpoint-bridging protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=bpb1 PE=1 SV=1
Length = 587
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 80/128 (62%), Gaps = 18/128 (14%)
Query: 29 RLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYE-- 86
++ VPV YP + NF+G ++GPRG++LK +EA + + IRG+ SV KEGK R +
Sbjct: 189 KVYVPVKDYP-EINFIGLLIGPRGHTLKDMEAKSGAKIAIRGKGSV----KEGKGRSDPS 243
Query: 87 ---HLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLK---PVDESLDHYKKQQLREFAT 140
++ E LH L A+ ED IN HA+ +++N+++ V E + K+ QLR+ AT
Sbjct: 244 VRGNMEEDLHCLVTADS-EDKIN----HAIKLIDNVIQTAASVPEGQNDLKRNQLRQLAT 298
Query: 141 LNGTLREE 148
LNGTLR++
Sbjct: 299 LNGTLRDD 306
>sp|Q9JLP1|KHDR3_RAT KH domain-containing, RNA-binding, signal transduction-associated
protein 3 OS=Rattus norvegicus GN=Khdrbs3 PE=1 SV=1
Length = 346
Score = 83.2 bits (204), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 72/118 (61%), Gaps = 9/118 (7%)
Query: 32 VPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKE------GKIRY 85
+PV ++P +FNFVG++LGPRGNSLKR++ T + I G+ S++D KE G+ +Y
Sbjct: 62 IPVKQFP-KFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY 120
Query: 86 EHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLREFATLNG 143
HLN+ LHVL E P +R+ HA+ ++ L P + D ++ QL+E LNG
Sbjct: 121 FHLNDDLHVLIEVFAPPAEAYARMGHALEDIKKFLIP--DYNDEIRQAQLQELTYLNG 176
>sp|O75525|KHDR3_HUMAN KH domain-containing, RNA-binding, signal transduction-associated
protein 3 OS=Homo sapiens GN=KHDRBS3 PE=1 SV=1
Length = 346
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 72/118 (61%), Gaps = 9/118 (7%)
Query: 32 VPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKE------GKIRY 85
+PV ++P +FNFVG++LGPRGNSLKR++ T + I G+ S++D KE G+ +Y
Sbjct: 62 IPVKQFP-KFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY 120
Query: 86 EHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLREFATLNG 143
HLN+ LHVL E P +R+ HA+ ++ L P + D ++ QL+E LNG
Sbjct: 121 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNG 176
>sp|Q9R226|KHDR3_MOUSE KH domain-containing, RNA-binding, signal transduction-associated
protein 3 OS=Mus musculus GN=Khdrbs3 PE=1 SV=1
Length = 346
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 72/118 (61%), Gaps = 9/118 (7%)
Query: 32 VPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKE------GKIRY 85
+PV ++P +FNFVG++LGPRGNSLKR++ T + I G+ S++D KE G+ +Y
Sbjct: 62 IPVKQFP-KFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY 120
Query: 86 EHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLREFATLNG 143
HLN+ LHVL E P +R+ HA+ ++ L P + D ++ QL+E LNG
Sbjct: 121 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNG 176
>sp|Q750X2|BBP_ASHGO Branchpoint-bridging protein OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=BBP PE=3 SV=2
Length = 507
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 73/124 (58%), Gaps = 13/124 (10%)
Query: 32 VPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYE----- 86
+P++ YP + NFVG +LGPRGN+LK+++ + C + IRG+ SV KEGK +
Sbjct: 155 IPINDYP-EINFVGLLLGPRGNTLKQLQQQSGCKIVIRGRGSV----KEGKAATDLPKGA 209
Query: 87 -HLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLREFATLNGTL 145
++NEPLH + A+ E I I++ + P E + K+ QLRE A LNGTL
Sbjct: 210 MNMNEPLHCVISADTEEKIPLGINAVESIIIKAITSP--EGQNDLKRGQLRELAVLNGTL 267
Query: 146 REES 149
RE++
Sbjct: 268 REDN 271
>sp|Q15637|SF01_HUMAN Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4
Length = 639
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 75/133 (56%), Gaps = 13/133 (9%)
Query: 22 PVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEG 81
P + ++ +P D+YP + NFVG ++GPRGN+LK +E + IRG+ SVK+ K G
Sbjct: 132 PATRVSDKVMIPQDEYP-EINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEG-KVG 189
Query: 82 KIRYEHL---NEPLHVLGEAEFPEDIINSRLDHAVAILENLLK---PVDESLDHYKKQQL 135
+ + L +EPLH L A E++ AV + N+LK E + +K QL
Sbjct: 190 RKDGQMLPGEDEPLHALVTANTMENV-----KKAVEQIRNILKQGIETPEDQNDLRKMQL 244
Query: 136 REFATLNGTLREE 148
RE A LNGTLRE+
Sbjct: 245 RELARLNGTLRED 257
>sp|Q64213|SF01_MOUSE Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=6
Length = 653
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 75/133 (56%), Gaps = 13/133 (9%)
Query: 22 PVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEG 81
P + ++ +P D+YP + NFVG ++GPRGN+LK +E + IRG+ SVK+ K G
Sbjct: 132 PATRVSDKVMIPQDEYP-EINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEG-KVG 189
Query: 82 KIRYEHL---NEPLHVLGEAEFPEDIINSRLDHAVAILENLLK---PVDESLDHYKKQQL 135
+ + L +EPLH L A E++ AV + N+LK E + +K QL
Sbjct: 190 RKDGQMLPGEDEPLHALVTANTMENV-----KKAVEQIRNILKQGIETPEDQNDLRKMQL 244
Query: 136 REFATLNGTLREE 148
RE A LNGTLRE+
Sbjct: 245 RELARLNGTLRED 257
>sp|Q12186|BBP_YEAST Branchpoint-bridging protein OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MSL5 PE=1 SV=1
Length = 476
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 77/126 (61%), Gaps = 17/126 (13%)
Query: 32 VPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKD-----SLKEGKIRYE 86
+PVD+YP+ NFVG +LGPRG +L++++ + C + IRG+ SVK+ L G + +E
Sbjct: 154 IPVDQYPD-VNFVGLLLGPRGRTLRKLQEDSNCKIAIRGRGSVKEGKNASDLPPGAMNFE 212
Query: 87 HLNEPLHVLGEAEFPEDIINSRLDHAVAILENL-LKPVD--ESLDHYKKQQLREFATLNG 143
+PLH L A+ ED ++ + + +N+ +K V E + K+ QLRE A LNG
Sbjct: 213 ---DPLHCLIIADS-ED----KIQKGIKVCQNIVIKAVTSPEGQNDLKRGQLRELAELNG 264
Query: 144 TLREES 149
TLRE++
Sbjct: 265 TLREDN 270
>sp|Q4WXV6|BBP_ASPFU Branchpoint-bridging protein OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bbp PE=3
SV=1
Length = 566
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 75/125 (60%), Gaps = 18/125 (14%)
Query: 32 VPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYE----- 86
VPV+ YP + NF+G ++GPRGN+LK++EA + + IRG+ SV KEGK R +
Sbjct: 187 VPVNDYP-EINFIGLLIGPRGNTLKKMEAESGAKIAIRGKGSV----KEGKGRSDAAHAS 241
Query: 87 HLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLK---PVDESLDHYKKQQLREFATLNG 143
+ E LH L A+ E +++ A ++ N+++ + E + K+ QLRE A LNG
Sbjct: 242 NQEEDLHCLIMADTEE-----KVNKAKKLVHNVIETAASIPEGQNELKRNQLRELAALNG 296
Query: 144 TLREE 148
TLR++
Sbjct: 297 TLRDD 301
>sp|Q6FW77|BBP_CANGA Branchpoint-bridging protein OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=BBP
PE=3 SV=1
Length = 465
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 13/124 (10%)
Query: 32 VPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYE----- 86
+PV +YP Q NFVG +LGPRG +L++++ + C + IRG+ SV KEGK +
Sbjct: 140 IPVSQYP-QINFVGLLLGPRGKTLRKMQEDSGCKIAIRGRGSV----KEGKTSSDLPPGA 194
Query: 87 -HLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLREFATLNGTL 145
++PLH L A+ E I N +++ + P E + K+ QLRE A LNGTL
Sbjct: 195 MDFSDPLHCLIIADNEEKIENGIKACRNIVIKAVTSP--EGQNELKRGQLRELAELNGTL 252
Query: 146 REES 149
RE++
Sbjct: 253 REDN 256
>sp|Q60749|KHDR1_MOUSE KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2
Length = 443
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 9/121 (7%)
Query: 29 RLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIR---- 84
R+ +PV +YP +FNFVG+ILGP+GN++KR++ T + + G+ S++D KE ++R
Sbjct: 159 RVLIPVKQYP-KFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGD 217
Query: 85 --YEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLREFATLN 142
Y HLN LHV E P + + HA+ ++ L P + +D ++Q E + LN
Sbjct: 218 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLN 275
Query: 143 G 143
G
Sbjct: 276 G 276
>sp|Q07666|KHDR1_HUMAN KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Homo sapiens GN=KHDRBS1 PE=1 SV=1
Length = 443
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 9/121 (7%)
Query: 29 RLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIR---- 84
R+ +PV +YP +FNFVG+ILGP+GN++KR++ T + + G+ S++D KE ++R
Sbjct: 159 RVLIPVKQYP-KFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGD 217
Query: 85 --YEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLREFATLN 142
Y HLN LHV E P + + HA+ ++ L P + +D ++Q E + LN
Sbjct: 218 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLN 275
Query: 143 G 143
G
Sbjct: 276 G 276
>sp|Q91V33|KHDR1_RAT KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1
Length = 443
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 9/121 (7%)
Query: 29 RLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIR---- 84
R+ +PV +YP +FNFVG+ILGP+GN++KR++ T + + G+ S++D KE ++R
Sbjct: 159 RVLIPVKQYP-KFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGD 217
Query: 85 --YEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLREFATLN 142
Y HLN LHV E P + + HA+ ++ L P + +D ++Q E + LN
Sbjct: 218 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLN 275
Query: 143 G 143
G
Sbjct: 276 G 276
>sp|Q8NIW7|BBP_NEUCR Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=bpb-1 PE=3 SV=1
Length = 607
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 74/125 (59%), Gaps = 18/125 (14%)
Query: 32 VPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYE----- 86
VPV+ YP + NF+G ++GPRGN+LK++E + + IRG+ SV KEGK R +
Sbjct: 202 VPVNDYP-EINFIGLLIGPRGNTLKKMETESGAKIAIRGKGSV----KEGKGRSDAAHSS 256
Query: 87 HLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLK---PVDESLDHYKKQQLREFATLNG 143
+ E LH L A+ E +++ A ++ N+++ + E + K+ QLRE A LNG
Sbjct: 257 NQEEDLHCLIMADTEE-----KVNKAKKLIHNIIETAASIPEGQNELKRNQLRELAALNG 311
Query: 144 TLREE 148
TLR++
Sbjct: 312 TLRDD 316
>sp|Q8UUW7|KHDR1_CHICK KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Gallus gallus GN=KHDRBS1 PE=2 SV=1
Length = 433
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 71/122 (58%), Gaps = 9/122 (7%)
Query: 29 RLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIR---- 84
R+ +PV +YP +FNFVG+ILGP+GN++KR++ T + + G+ S++D KE ++R
Sbjct: 142 RVLIPVKQYP-KFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGD 200
Query: 85 --YEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLREFATLN 142
Y HLN LHV E P + + HA+ ++ L P + +D ++Q E + LN
Sbjct: 201 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLN 258
Query: 143 GT 144
G
Sbjct: 259 GV 260
>sp|Q5AED9|BBP_CANAL Branchpoint-bridging protein OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=BBP PE=3 SV=1
Length = 455
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 13/131 (9%)
Query: 27 VIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYE 86
V RL VPV YP+ NFVG ++GPRGN+LK+++ + + IRG+ SVK+
Sbjct: 149 VERLYVPVKDYPD-INFVGFLIGPRGNTLKKLQEDSGARLQIRGKGSVKEGKSSDGFGSS 207
Query: 87 H----LNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPV---DESLDHYKKQQLREFA 139
+ + LHVL A+ P ++ AV ++ ++ + + ++ K+ QL+E A
Sbjct: 208 QTGTDIQDDLHVLITADSP-----LKISKAVKLVNEIIDKLIFSPQGMNFMKRDQLKELA 262
Query: 140 TLNGTLREESP 150
LNGTLRE P
Sbjct: 263 VLNGTLRETKP 273
>sp|Q6C187|BBP_YARLI Branchpoint-bridging protein OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=BBP PE=3 SV=1
Length = 605
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 32 VPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNE- 90
+PV++YP+ NF+G++LG RG +LK++E + + IRG+ SVK I ++ E
Sbjct: 185 IPVNEYPD-INFIGQLLGARGKTLKKMEQESGAKICIRGRGSVKQGKGRTDIPFQSTAED 243
Query: 91 PLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLREFATLNGTLREE 148
LH L +E E I +R V + + V E + K+ QLRE A LNGTLR++
Sbjct: 244 DLHCLIISEDEEKI--ARAVQLVQQVIDTAASVPEGQNELKRSQLRELAALNGTLRDD 299
>sp|P0CO44|BBP_CRYNJ Branchpoint-bridging protein OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=BBP PE=3 SV=1
Length = 546
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 72/124 (58%), Gaps = 17/124 (13%)
Query: 32 VPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHL--- 88
+PV ++P + NF G ++GPRGNSLK++E + + IRG+ SV KEGK R +
Sbjct: 252 IPVKEFP-EINFFGLLVGPRGNSLKKMERESGAKISIRGKGSV----KEGKGRAGNFPQD 306
Query: 89 -NEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVD---ESLDHYKKQQLREFATLNGT 144
+ LH L A+ S++ VA++ +++ E + +K+ QLRE A+LNGT
Sbjct: 307 EEDELHCLITAD-----DESKVKTCVALINKVIETAASTPEGENDHKRNQLRELASLNGT 361
Query: 145 LREE 148
LR++
Sbjct: 362 LRDD 365
>sp|P0CO45|BBP_CRYNB Branchpoint-bridging protein OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=BBP PE=3 SV=1
Length = 546
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 72/124 (58%), Gaps = 17/124 (13%)
Query: 32 VPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHL--- 88
+PV ++P + NF G ++GPRGNSLK++E + + IRG+ SV KEGK R +
Sbjct: 252 IPVKEFP-EINFFGLLVGPRGNSLKKMERESGAKISIRGKGSV----KEGKGRAGNFPQD 306
Query: 89 -NEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVD---ESLDHYKKQQLREFATLNGT 144
+ LH L A+ S++ VA++ +++ E + +K+ QLRE A+LNGT
Sbjct: 307 EEDELHCLITAD-----DESKVKTCVALINKVIETAASTPEGENDHKRNQLRELASLNGT 361
Query: 145 LREE 148
LR++
Sbjct: 362 LRDD 365
>sp|P13230|GRP33_ARTSA Glycine-rich protein GRP33 OS=Artemia salina PE=2 SV=1
Length = 308
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 52/77 (67%), Gaps = 7/77 (9%)
Query: 24 VKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKE--- 80
VK V R +PVD++P ++NF+G++LGP G+++K+++ T + I G+ S++D KE
Sbjct: 72 VKLVSRCCLPVDQFP-KYNFLGKLLGPGGSTMKQLQDETMTKISILGRGSMRDRNKEEEL 130
Query: 81 ---GKIRYEHLNEPLHV 94
G ++Y HLNE LH+
Sbjct: 131 RNSGDVKYAHLNEQLHI 147
>sp|Q6BSP4|BBP_DEBHA Branchpoint-bridging protein OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=BBP PE=3 SV=2
Length = 518
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 21/144 (14%)
Query: 24 VKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKI 83
VK ++ +PV YP+ NFVG +LGPRGN+L++++ + + IRG+ SVKD
Sbjct: 160 VKTYEKIYIPVKDYPD-INFVGLLLGPRGNTLRQLQEDSGARLAIRGKGSVKDGKSTSSN 218
Query: 84 RYEHL----------------NEPLHVLGEAEFPEDIINS-RLDHAVAILENLLKPVDES 126
+ N+ LHV+ ++ I + +L + V I + + PV +
Sbjct: 219 NDDDDSNSSLSFSNPNLNSSGNDDLHVVITSDSQSKIAKAIKLTNQV-IEKAISSPVGQ- 276
Query: 127 LDHYKKQQLREFATLNGTLREESP 150
+ K+ QLRE A LNGTLRE P
Sbjct: 277 -NDLKRGQLRELAILNGTLRETKP 299
>sp|Q4P0H7|BBP_USTMA Branchpoint-bridging protein OS=Ustilago maydis (strain 521 / FGSC
9021) GN=BBP PE=3 SV=1
Length = 625
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 5/117 (4%)
Query: 32 VPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEP 91
+P+ ++P + F G ++GPRGN+LK +E + + IRG+ SVK +GK+ + E
Sbjct: 254 LPIKEFP-EIKFFGLLVGPRGNTLKTMERQSGAKISIRGKGSVK--TGKGKMDADEDEEE 310
Query: 92 LHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLREFATLNGTLREE 148
+H + A+ E + + ++E + DH K+ QLRE A LNGTLR++
Sbjct: 311 MHCVVTAD-DEASVKKCIKLINQVIETAASTPEGENDH-KRNQLRELAALNGTLRDD 365
>sp|Q6NZ18|K0907_DANRE UPF0469 protein KIAA0907 homolog OS=Danio rerio PE=2 SV=1
Length = 570
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 29 RLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHL 88
++ V +D+ FN R+ GP + L+ ++A T VF+RG+ S G+ +
Sbjct: 209 KVFVGLDQALQGFNVKERVEGPSCSFLQHIQAETGAKVFLRGKGSGCLEPASGREAF--- 265
Query: 89 NEPLHVLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQ 133
EP+++ PE + +++ + ENLL+ V Y Q
Sbjct: 266 -EPMYIYISHPKPEGLASAK-----TLCENLLQTVHAEYSRYLNQ 304
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,937,265
Number of Sequences: 539616
Number of extensions: 2786245
Number of successful extensions: 8833
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 8627
Number of HSP's gapped (non-prelim): 178
length of query: 175
length of database: 191,569,459
effective HSP length: 110
effective length of query: 65
effective length of database: 132,211,699
effective search space: 8593760435
effective search space used: 8593760435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)