Query 030537
Match_columns 175
No_of_seqs 131 out of 418
Neff 5.2
Searched_HMMs 29240
Date Tue Mar 26 00:54:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030537.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030537hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl5_A MGC83862 protein, quaki 100.0 2.5E-50 8.5E-55 317.0 4.5 130 25-155 1-134 (140)
2 1k1g_A SF1-BO isoform; splicin 100.0 8.9E-44 3E-48 276.4 7.0 123 22-150 3-130 (131)
3 2yqr_A KIAA0907 protein; struc 100.0 2.6E-31 8.8E-36 203.6 7.2 109 15-134 2-111 (119)
4 2opv_A KHSRP protein; KH domai 99.1 1.3E-10 4.4E-15 82.6 7.1 71 26-121 14-84 (85)
5 1dtj_A RNA-binding neurooncolo 99.1 1.2E-10 4.1E-15 80.5 5.3 74 24-121 1-74 (76)
6 1x4m_A FAR upstream element bi 99.0 6.6E-10 2.3E-14 80.4 5.7 73 26-123 15-87 (94)
7 1x4n_A FAR upstream element bi 98.9 7.4E-10 2.5E-14 79.9 5.1 71 25-122 14-84 (92)
8 2dgr_A Ring finger and KH doma 98.9 8.9E-10 3.1E-14 78.7 4.4 66 26-121 10-75 (83)
9 1wvn_A Poly(RC)-binding protei 98.9 1.2E-09 4.1E-14 76.9 4.5 71 25-122 5-75 (82)
10 1we8_A Tudor and KH domain con 98.9 1.4E-09 4.8E-14 80.0 5.0 75 22-121 11-85 (104)
11 1ec6_A RNA-binding protein NOV 98.9 5.1E-10 1.8E-14 79.6 2.5 73 25-121 2-74 (87)
12 2hh2_A KH-type splicing regula 98.9 1.6E-09 5.5E-14 80.3 5.0 72 27-122 8-79 (107)
13 1zzk_A Heterogeneous nuclear r 98.9 2.2E-09 7.6E-14 75.6 4.9 70 25-121 6-75 (82)
14 2p2r_A Poly(RC)-binding protei 98.9 1.3E-09 4.6E-14 75.5 3.5 71 25-122 4-74 (76)
15 1vig_A Vigilin; RNA-binding pr 98.8 3.8E-09 1.3E-13 72.8 5.1 66 27-121 6-71 (71)
16 1j5k_A Heterogeneous nuclear r 98.8 2.5E-09 8.6E-14 76.5 4.2 70 25-121 13-82 (89)
17 2ctk_A Vigilin; K homology typ 98.8 2.9E-09 9.8E-14 78.8 3.8 72 22-122 13-84 (104)
18 2cte_A Vigilin; K homology typ 98.8 3E-09 1E-13 77.0 3.7 68 25-121 16-83 (94)
19 2hh3_A KH-type splicing regula 98.8 2.9E-09 9.8E-14 79.2 3.4 68 27-121 12-79 (106)
20 2axy_A Poly(RC)-binding protei 98.8 2.8E-09 9.7E-14 73.7 2.9 68 25-121 4-71 (73)
21 2ctl_A Vigilin; K homology typ 98.7 1.9E-08 6.4E-13 73.4 4.4 70 26-121 17-86 (97)
22 2ctm_A Vigilin; K homology typ 98.6 1.7E-08 5.6E-13 73.6 3.7 68 26-121 17-84 (95)
23 3krm_A Insulin-like growth fac 98.6 3.2E-08 1.1E-12 76.5 3.8 73 25-122 84-156 (163)
24 2jvz_A KH type-splicing, FAR u 98.4 2.9E-07 9.8E-12 70.8 6.1 72 27-123 3-74 (164)
25 1j4w_A FUSE binding protein; s 98.4 1.5E-07 5.1E-12 73.7 4.4 71 26-120 104-174 (174)
26 2ctj_A Vigilin; K homology typ 98.4 9.8E-08 3.3E-12 69.6 2.0 66 27-121 18-84 (95)
27 2jvz_A KH type-splicing, FAR u 98.3 1.6E-07 5.4E-12 72.3 2.7 67 28-121 93-159 (164)
28 2cpq_A FragIle X mental retard 98.3 2.3E-07 7.8E-12 67.7 3.3 66 26-122 15-81 (91)
29 2jzx_A Poly(RC)-binding protei 98.3 3E-07 1E-11 70.8 3.3 70 26-121 89-158 (160)
30 1j4w_A FUSE binding protein; s 98.3 3.8E-07 1.3E-11 71.4 3.5 69 27-122 4-72 (174)
31 2jzx_A Poly(RC)-binding protei 98.3 4.6E-07 1.6E-11 69.8 3.4 68 24-120 3-70 (160)
32 2anr_A Neuro-oncological ventr 98.2 5.1E-07 1.7E-11 70.8 2.8 74 26-123 6-79 (178)
33 2anr_A Neuro-oncological ventr 98.2 3.8E-07 1.3E-11 71.5 1.8 72 26-122 104-175 (178)
34 3krm_A Insulin-like growth fac 98.1 1.7E-06 5.7E-11 66.8 4.1 68 27-120 4-71 (163)
35 3u1k_A Polyribonucleotide nucl 98.1 1.4E-06 4.7E-11 82.0 3.8 68 21-120 562-629 (630)
36 1tua_A Hypothetical protein AP 97.9 6.4E-06 2.2E-10 67.1 3.3 70 42-138 107-185 (191)
37 2e3u_A PH-DIM2P, hypothetical 97.6 2E-05 6.8E-10 65.3 2.8 73 22-121 30-102 (219)
38 2e3u_A PH-DIM2P, hypothetical 97.6 2E-05 6.9E-10 65.2 2.1 53 43-122 139-191 (219)
39 4aid_A Polyribonucleotide nucl 97.6 1.2E-05 4E-10 76.9 0.4 70 22-123 566-635 (726)
40 2qnd_A FMR1 protein; KH domain 97.4 8E-05 2.7E-09 57.4 3.6 72 28-122 69-142 (144)
41 3n89_A Defective in GERM LINE 96.9 0.0018 6.2E-08 57.6 6.8 74 25-120 29-104 (376)
42 2ctf_A Vigilin; K homology typ 96.7 0.0014 4.8E-08 47.9 4.2 64 26-121 27-91 (102)
43 2qnd_A FMR1 protein; KH domain 96.5 0.00099 3.4E-08 51.2 2.2 34 26-68 4-37 (144)
44 3cdi_A Polynucleotide phosphor 96.3 0.00059 2E-08 65.1 0.0 67 23-121 557-623 (723)
45 1e3p_A Guanosine pentaphosphat 95.5 0.00054 1.8E-08 65.7 -4.4 64 26-121 598-661 (757)
46 1tua_A Hypothetical protein AP 94.9 0.021 7.1E-07 46.3 3.9 71 25-122 3-73 (191)
47 3v69_A Protein filia; RNA-bind 94.2 0.032 1.1E-06 43.4 3.4 29 41-69 64-92 (140)
48 3n89_A Defective in GERM LINE 91.3 0.13 4.5E-06 45.6 3.5 63 42-120 195-259 (376)
49 2z0s_A Probable exosome comple 82.5 3 0.0001 34.0 6.5 69 42-133 157-225 (235)
50 2cxc_A NUSA; transcription ter 70.9 0.73 2.5E-05 35.6 -0.4 29 42-70 45-73 (144)
51 2ba0_A Archeal exosome RNA bin 64.2 7.4 0.00025 31.6 4.4 73 42-139 145-217 (229)
52 2je6_I RRP4, exosome complex R 57.3 0.79 2.7E-05 38.1 -2.7 56 42-119 164-219 (251)
53 2asb_A Transcription elongatio 52.2 3.3 0.00011 34.8 0.3 41 28-70 114-155 (251)
54 3k5i_A Phosphoribosyl-aminoimi 50.0 48 0.0016 28.2 7.3 62 44-117 333-399 (403)
55 2nn6_G Exosome complex exonucl 49.6 3.7 0.00013 35.0 0.2 54 42-117 219-272 (289)
56 1xao_A YDJ1, mitochondrial pro 48.0 25 0.00084 25.6 4.5 50 61-122 47-98 (121)
57 1k0r_A NUSA; two component arr 45.9 4.9 0.00017 35.5 0.4 41 28-70 237-278 (366)
58 3mlq_E Transcription-repair co 44.5 8.7 0.0003 25.9 1.4 23 28-54 43-65 (71)
59 2pt7_G HP1451, hypothetical pr 42.5 2.9 9.9E-05 32.5 -1.5 57 44-120 44-101 (152)
60 1hh2_P NUSA, N utilization sub 32.9 15 0.00051 32.0 1.3 41 28-70 233-274 (344)
61 3gku_A Probable RNA-binding pr 32.7 5.7 0.00019 32.7 -1.3 59 44-120 103-162 (225)
62 1wjw_A Phosphoacetylglucosamin 32.7 1.3E+02 0.0045 21.3 6.7 52 53-120 45-97 (112)
63 2ja9_A Exosome complex exonucl 31.2 31 0.001 27.0 2.8 58 42-122 100-159 (175)
64 4e4t_A Phosphoribosylaminoimid 29.6 1E+02 0.0034 26.5 6.1 51 54-116 364-414 (419)
65 3isp_A HTH-type transcriptiona 28.8 24 0.00081 27.4 1.8 19 54-72 40-58 (303)
66 3iev_A GTP-binding protein ERA 28.4 16 0.00056 30.0 0.8 42 22-69 236-285 (308)
67 3agx_A DNAJ homolog subfamily 28.4 58 0.002 25.1 4.0 49 61-120 131-179 (181)
68 3eth_A Phosphoribosylaminoimid 27.4 89 0.003 26.4 5.3 45 44-102 282-326 (355)
69 3i38_A Putative chaperone DNAJ 26.9 91 0.0031 22.1 4.5 32 61-102 49-80 (109)
70 1a6b_B Momulv, zinc finger pro 26.2 64 0.0022 19.4 3.0 26 144-169 7-34 (40)
71 3u42_A 50S ribosomal protein L 24.4 43 0.0015 27.3 2.6 64 41-120 124-201 (229)
72 2kie_A Inositol polyphosphate 23.8 27 0.00093 26.2 1.2 17 55-71 78-94 (124)
73 2esn_A Probable transcriptiona 23.4 99 0.0034 23.8 4.5 19 54-72 44-62 (310)
74 2q2g_A HSP40 protein, heat sho 22.7 85 0.0029 24.0 3.9 50 60-120 130-179 (180)
75 3fzv_A Probable transcriptiona 21.3 24 0.00081 27.2 0.4 16 54-69 38-53 (306)
76 3szp_A Transcriptional regulat 20.4 44 0.0015 25.2 1.8 19 54-72 35-53 (291)
No 1
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=100.00 E-value=2.5e-50 Score=317.00 Aligned_cols=130 Identities=45% Similarity=0.677 Sum_probs=122.6
Q ss_pred eEEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccC----CCCCCCCCCCcEEEEEeeC
Q 030537 25 KRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEG----KIRYEHLNEPLHVLGEAEF 100 (175)
Q Consensus 25 k~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~----~p~~e~~~epLHV~Isa~~ 100 (175)
++++|||||+++||+ |||||+||||||+|+|+||++|||||.|||+||++++++|+ +|+|+|++|||||+|++++
T Consensus 1 ~~~~Ki~IP~~~~P~-~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~ 79 (140)
T 2bl5_A 1 QLQEKLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVED 79 (140)
T ss_dssp CEEEEEECCTTTCSS-SCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECS
T ss_pred CceeEEEcCcccCCC-CCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecC
Confidence 368999999999999 99999999999999999999999999999999999988764 5678899999999999999
Q ss_pred chhhHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHhcCccCCCCCCCCCC
Q 030537 101 PEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLREFATLNGTLREESPSMSPS 155 (175)
Q Consensus 101 ~~~~~~~~l~~A~e~Ie~lL~p~~e~~de~K~~QL~eLA~lNGt~r~~~~~~~g~ 155 (175)
++++|+++|++|+++|++||.|+++++|++|++||+|||+||||||++....|.-
T Consensus 80 ~~~~~~~~l~~A~~~I~~lL~p~~e~~de~K~~QL~eLA~lNGt~r~~~~~~~~~ 134 (140)
T 2bl5_A 80 AQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLKSPAL 134 (140)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSSTTTSGGGGSCTTC
T ss_pred chhhHHHHHHHHHHHHHHHCCCCCcchhHHHHHHHHHHHHhcCCcCCCcccchhh
Confidence 9999999999999999999999999999999999999999999999998877643
No 2
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=100.00 E-value=8.9e-44 Score=276.36 Aligned_cols=123 Identities=39% Similarity=0.609 Sum_probs=108.3
Q ss_pred CceeEEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccC--CCCCCCCCCCcEEEEEee
Q 030537 22 PVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEG--KIRYEHLNEPLHVLGEAE 99 (175)
Q Consensus 22 ~~~k~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~--~p~~e~~~epLHV~Isa~ 99 (175)
...|+++|||||+++||+ |||||+||||+|+|+|+||++|||+|.|||+||+++++++. ...++|++|||||+|+++
T Consensus 3 ~~~k~~~kv~IP~~~~P~-~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~ 81 (131)
T 1k1g_A 3 MATRVSDKVMIPQDEYPE-INFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTAN 81 (131)
T ss_dssp --CCEEEEEECCTTTCCS-HHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEES
T ss_pred CCceEEEEEEECCccccC-cceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEEC
Confidence 356899999999999999 99999999999999999999999999999999999986654 234678999999999999
Q ss_pred CchhhHHHHHHHHHHHHHhccCC---CCcchHHHHHHHHHHHHHhcCccCCCCC
Q 030537 100 FPEDIINSRLDHAVAILENLLKP---VDESLDHYKKQQLREFATLNGTLREESP 150 (175)
Q Consensus 100 ~~~~~~~~~l~~A~e~Ie~lL~p---~~e~~de~K~~QL~eLA~lNGt~r~~~~ 150 (175)
+++ ++++|+++|+.||.+ +++++|++|++||+|||+||||||+++.
T Consensus 82 ~~e-----~~~~A~~~I~~ll~~~~~~p~~~d~~k~~Ql~eLa~~nGt~r~~~~ 130 (131)
T 1k1g_A 82 TME-----NVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN 130 (131)
T ss_dssp SHH-----HHHHHHHHHHHHHTTTTSCCTTSSGGGGGGGHHHHHHHTCCC----
T ss_pred CHH-----HHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHcCcCCCcCC
Confidence 865 799999999999975 7889999999999999999999999864
No 3
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.97 E-value=2.6e-31 Score=203.62 Aligned_cols=109 Identities=25% Similarity=0.282 Sum_probs=94.0
Q ss_pred CCCCCCCCceeEEEEEEccCC-CCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcE
Q 030537 15 LPGIPTAPVVKRVIRLDVPVD-KYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLH 93 (175)
Q Consensus 15 ~p~~~~~~~~k~~~Ki~IPv~-~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLH 93 (175)
++.+|++- ..+++|||||++ .||+ |||+|+||||+|+|+|+||++|||||.|||+||++.. ... .++++||||
T Consensus 2 ~~~~~~~~-~~~~~ki~ip~~~~~p~-fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e---~~~-~~e~~e~l~ 75 (119)
T 2yqr_A 2 SSGSSGGM-HYVQDKLFVGLEHAVPT-FNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIE---PAS-GREAFEPMY 75 (119)
T ss_dssp CCCCCSCC-SCEEEEEECCCTTSCTT-TCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCC---TTT-SSCCSSBCE
T ss_pred CCCCCCCe-eEEEEEEEcCCccCCCC-CCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccc---ccc-ccccCCCcE
Confidence 44444444 578899999999 5999 9999999999999999999999999999999998742 122 246899999
Q ss_pred EEEEeeCchhhHHHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 030537 94 VLGEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQ 134 (175)
Q Consensus 94 V~Isa~~~~~~~~~~l~~A~e~Ie~lL~p~~e~~de~K~~Q 134 (175)
|+|++.+++ .+++|+++|+.||.++.+..+++|++|
T Consensus 76 V~I~a~~~e-----~i~~A~~~Ie~Ll~~v~~~~~~~~~q~ 111 (119)
T 2yqr_A 76 IYISHPKPE-----GLAAAKKLCENLLQTVHAEYSRFVNQI 111 (119)
T ss_dssp EEEEESSHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCHH-----HHHHHHHHHHHHhhchHHHHHHHHHhh
Confidence 999999975 799999999999999998899888876
No 4
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.12 E-value=1.3e-10 Score=82.58 Aligned_cols=71 Identities=15% Similarity=0.276 Sum_probs=57.5
Q ss_pred EEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhH
Q 030537 26 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDII 105 (175)
Q Consensus 26 ~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~ 105 (175)
.+.+|.|| -+++|+|||++|.|+|+|+++|||+|.|...|+.. ...+-.|.|++ +++
T Consensus 14 ~~~~i~Ip-------~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~------------~~~er~v~I~G-~~~--- 70 (85)
T 2opv_A 14 TVQEIMIP-------AGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN------------TNVDKPLRIIG-DPY--- 70 (85)
T ss_dssp EEEEEEEC-------TTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS------------TTSCEEEEEEE-CHH---
T ss_pred EEEEEEeC-------hhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC------------CCCceEEEEEe-CHH---
Confidence 45678998 47899999999999999999999999998765411 13345799998 654
Q ss_pred HHHHHHHHHHHHhccC
Q 030537 106 NSRLDHAVAILENLLK 121 (175)
Q Consensus 106 ~~~l~~A~e~Ie~lL~ 121 (175)
.+++|+++|+.++.
T Consensus 71 --~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 71 --KVQQACEMVMDILR 84 (85)
T ss_dssp --HHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHhc
Confidence 68999999999874
No 5
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.08 E-value=1.2e-10 Score=80.55 Aligned_cols=74 Identities=22% Similarity=0.327 Sum_probs=57.9
Q ss_pred eeEEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchh
Q 030537 24 VKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPED 103 (175)
Q Consensus 24 ~k~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~ 103 (175)
+|.+.++.|| -+++|+|||++|.|+|+|+++|||+|.|...+... |+ ...-.|.|++. ++
T Consensus 1 ~~~~~~i~Ip-------~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~-------~~----~~~~~v~I~G~-~~- 60 (76)
T 1dtj_A 1 MKELVEMAVP-------ENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL-------PG----TRNRRVTITGS-PA- 60 (76)
T ss_dssp CCEEEEEEEE-------TTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS-------TT----CCEEEEEEEES-HH-
T ss_pred CceEEEEEEC-------hHHcceEECCCchHHHHHHHHhCCEEEECcCCCCC-------CC----CceeEEEEEeC-HH-
Confidence 3567789998 48899999999999999999999999998643211 11 23457888875 33
Q ss_pred hHHHHHHHHHHHHHhccC
Q 030537 104 IINSRLDHAVAILENLLK 121 (175)
Q Consensus 104 ~~~~~l~~A~e~Ie~lL~ 121 (175)
.+++|.++|+.++.
T Consensus 61 ----~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 61 ----ATQAAQYLISQRVT 74 (76)
T ss_dssp ----HHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHh
Confidence 68999999999885
No 6
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.97 E-value=6.6e-10 Score=80.41 Aligned_cols=73 Identities=12% Similarity=0.233 Sum_probs=58.8
Q ss_pred EEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhH
Q 030537 26 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDII 105 (175)
Q Consensus 26 ~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~ 105 (175)
.+.+|.|| -+++|+|||++|.|+|+|+++|||+|.|...+... ...+-.|.|++ +++
T Consensus 15 ~~~~i~Ip-------~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~------------~~~~r~v~I~G-~~~--- 71 (94)
T 1x4m_A 15 AVQEIMIP-------ASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN------------TGADKPLRITG-DPY--- 71 (94)
T ss_dssp EEEEEEEC-------HHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS------------SCSCEEEEEEE-CTT---
T ss_pred EEEEEEEC-------hhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC------------CCCceEEEEEe-CHH---
Confidence 46779998 58999999999999999999999999998654211 12345788988 554
Q ss_pred HHHHHHHHHHHHhccCCC
Q 030537 106 NSRLDHAVAILENLLKPV 123 (175)
Q Consensus 106 ~~~l~~A~e~Ie~lL~p~ 123 (175)
.+++|+++|+.+|...
T Consensus 72 --~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 72 --KVQQAKEMVLELIRDQ 87 (94)
T ss_dssp --THHHHHHHHHHHHCCC
T ss_pred --HHHHHHHHHHHHHhcc
Confidence 5899999999999754
No 7
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.95 E-value=7.4e-10 Score=79.87 Aligned_cols=71 Identities=21% Similarity=0.351 Sum_probs=56.6
Q ss_pred eEEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhh
Q 030537 25 KRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDI 104 (175)
Q Consensus 25 k~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~ 104 (175)
..+.+|.|| -+++|+|||++|.|+|+|+++|||+|.|..... ...+-.|.|++. ++
T Consensus 14 ~~~~~i~Ip-------~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~--------------g~~~r~v~I~G~-~e-- 69 (92)
T 1x4n_A 14 VMTEEYKVP-------DGMVGFIIGRGGEQISRIQQESGCKIQIAPDSG--------------GLPERSCMLTGT-PE-- 69 (92)
T ss_dssp CEEEEEEEE-------HHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCT--------------TCSEEEEEEEEC-HH--
T ss_pred CEEEEEEEC-------hHHcceeECCCchHHHHHHHHhCCEEEEcCCCC--------------CCCccEEEEEeC-HH--
Confidence 456789998 689999999999999999999999999985321 112347888875 43
Q ss_pred HHHHHHHHHHHHHhccCC
Q 030537 105 INSRLDHAVAILENLLKP 122 (175)
Q Consensus 105 ~~~~l~~A~e~Ie~lL~p 122 (175)
.+++|+++|+.++..
T Consensus 70 ---~v~~A~~~I~~~i~~ 84 (92)
T 1x4n_A 70 ---SVQSAKRLLDQIVEK 84 (92)
T ss_dssp ---HHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHh
Confidence 688999999998853
No 8
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=8.9e-10 Score=78.73 Aligned_cols=66 Identities=27% Similarity=0.511 Sum_probs=52.0
Q ss_pred EEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhH
Q 030537 26 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDII 105 (175)
Q Consensus 26 ~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~ 105 (175)
.+..|.|| .+++|.|||++|+|+|+||++|||+|.|-.++ +++ .|.|++.. +
T Consensus 10 ~~~~i~VP-------~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~----------------~~~-~v~ItG~~-e--- 61 (83)
T 2dgr_A 10 TTIQVRVP-------YRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD----------------KEP-VFAVTGMP-E--- 61 (83)
T ss_dssp EEEEEECC-------HHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS----------------SCC-EEEEEECT-T---
T ss_pred eEEEEEeC-------hHHeeeeECCCchHHHHHHHHhCCeEEecCCC----------------CCC-eEEEEcCH-H---
Confidence 45668888 69999999999999999999999999996322 122 47777755 3
Q ss_pred HHHHHHHHHHHHhccC
Q 030537 106 NSRLDHAVAILENLLK 121 (175)
Q Consensus 106 ~~~l~~A~e~Ie~lL~ 121 (175)
.+++|.++|+.++.
T Consensus 62 --~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 62 --NVDRAREEIEAHIT 75 (83)
T ss_dssp --THHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHh
Confidence 57899999998753
No 9
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.89 E-value=1.2e-09 Score=76.92 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=56.1
Q ss_pred eEEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhh
Q 030537 25 KRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDI 104 (175)
Q Consensus 25 k~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~ 104 (175)
+.+.++.|| -+++|.|||++|+|+|+|+++|||+|.|.... + ...+-.|.|++.. +
T Consensus 5 ~~~~~i~Ip-------~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~----------~----~~~~r~v~I~G~~-~-- 60 (82)
T 1wvn_A 5 QTTHELTIP-------NNLIGCIIGRQGANINEIRQMSGAQIKIANPV----------E----GSSGRQVTITGSA-A-- 60 (82)
T ss_dssp CEEEEEEEE-------GGGHHHHHCGGGHHHHHHHHHHCCEEEECCCC----------T----TCSEEEEEEEECH-H--
T ss_pred cEEEEEEEc-------hHhccceeCCCchhHHHHHHHhCCEEEEecCC----------C----CCCceEEEEEcCH-H--
Confidence 356778998 58999999999999999999999999997521 1 1234478888754 2
Q ss_pred HHHHHHHHHHHHHhccCC
Q 030537 105 INSRLDHAVAILENLLKP 122 (175)
Q Consensus 105 ~~~~l~~A~e~Ie~lL~p 122 (175)
.+++|.++|+.++..
T Consensus 61 ---~v~~A~~~I~~~i~~ 75 (82)
T 1wvn_A 61 ---SISLAQYLINARLSS 75 (82)
T ss_dssp ---HHHHHHHHHHHHTC-
T ss_pred ---HHHHHHHHHHHHHHh
Confidence 689999999999864
No 10
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.89 E-value=1.4e-09 Score=80.04 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=59.3
Q ss_pred CceeEEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCc
Q 030537 22 PVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFP 101 (175)
Q Consensus 22 ~~~k~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~ 101 (175)
+....+.+|.|| -+++|+|||++|.|+|+|+++|||+|.|-..... ...++-.|.|++...
T Consensus 11 ~~ap~~~~i~Ip-------~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~------------~~~~~~~V~I~G~~~ 71 (104)
T 1we8_A 11 ENTPVFEQLSVP-------QRSVGRIIGRGGETIRSICKASGAKITCDKESEG------------TLLLSRLIKISGTQK 71 (104)
T ss_dssp SSCEEEEEEEEE-------TTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCC------------SSSSEEEEEEEEEHH
T ss_pred CCCCEEEEEEEC-------hhheeeeECCCCHHHHHHHHHHCCEEEEecCCCC------------CCCCcceEEEEcCHH
Confidence 445677889999 5889999999999999999999999999853311 012345788888653
Q ss_pred hhhHHHHHHHHHHHHHhccC
Q 030537 102 EDIINSRLDHAVAILENLLK 121 (175)
Q Consensus 102 ~~~~~~~l~~A~e~Ie~lL~ 121 (175)
.+++|+++|+.++.
T Consensus 72 ------~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 72 ------EVAAAKHLILEKVS 85 (104)
T ss_dssp ------HHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHh
Confidence 57999999999985
No 11
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.89 E-value=5.1e-10 Score=79.64 Aligned_cols=73 Identities=22% Similarity=0.324 Sum_probs=57.0
Q ss_pred eEEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhh
Q 030537 25 KRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDI 104 (175)
Q Consensus 25 k~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~ 104 (175)
|.+.++.|| -+++|+|||++|.|+|+|+++|||+|.|...+... |+ ...-.|.|++. ++
T Consensus 2 k~t~~i~IP-------~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-------~g----~~~r~v~I~G~-~~-- 60 (87)
T 1ec6_A 2 KELVEIAVP-------ENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL-------PG----TRNRRVTITGS-PA-- 60 (87)
T ss_dssp CSEEEEEEE-------HHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS-------TT----SCEEEEEEESS-HH--
T ss_pred ceEEEEEEC-------hHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC-------CC----CCceEEEEEcC-HH--
Confidence 556788998 58999999999999999999999999998543111 11 22346788775 33
Q ss_pred HHHHHHHHHHHHHhccC
Q 030537 105 INSRLDHAVAILENLLK 121 (175)
Q Consensus 105 ~~~~l~~A~e~Ie~lL~ 121 (175)
.+..|.++|+.+|.
T Consensus 61 ---~v~~A~~~I~~~i~ 74 (87)
T 1ec6_A 61 ---ATQAAQYLISQRVT 74 (87)
T ss_dssp ---HHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHh
Confidence 68999999999986
No 12
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.88 E-value=1.6e-09 Score=80.26 Aligned_cols=72 Identities=19% Similarity=0.277 Sum_probs=55.8
Q ss_pred EEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhHH
Q 030537 27 VIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDIIN 106 (175)
Q Consensus 27 ~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~~ 106 (175)
+.+|.|| -+++|+|||++|+|+|+|+++|||+|.|..... +. .....-.|.|++ +++
T Consensus 8 ~~~i~IP-------~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~---------~~--~~~~~r~V~I~G-~~e---- 64 (107)
T 2hh2_A 8 EMTFSIP-------THKCGLVIGRGGENVKAINQQTGAFVEISRQLP---------PN--GDPNFKLFIIRG-SPQ---- 64 (107)
T ss_dssp CEEEEEE-------GGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCC---------TT--CCTTEEEEEEES-CHH----
T ss_pred eEEEEEC-------HHHcCccCCCCcHHHHHHHHHhCCEEEEcCccC---------CC--CCCCceEEEEEC-CHH----
Confidence 4678898 588999999999999999999999999985321 10 012234678877 443
Q ss_pred HHHHHHHHHHHhccCC
Q 030537 107 SRLDHAVAILENLLKP 122 (175)
Q Consensus 107 ~~l~~A~e~Ie~lL~p 122 (175)
.+++|+++|+++|..
T Consensus 65 -~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 65 -QIDHAKQLIEEKIEG 79 (107)
T ss_dssp -HHHHHHHHHHHHSCS
T ss_pred -HHHHHHHHHHHHHhc
Confidence 689999999999875
No 13
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.86 E-value=2.2e-09 Score=75.63 Aligned_cols=70 Identities=17% Similarity=0.300 Sum_probs=54.9
Q ss_pred eEEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhh
Q 030537 25 KRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDI 104 (175)
Q Consensus 25 k~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~ 104 (175)
+.+.+|.|| -+++|+|||++|+|+|+|+++|||+|.|...- ++ ..+-.|.|++. ++
T Consensus 6 ~~~~~i~Vp-------~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~----------~~----~~~~~v~I~G~-~~-- 61 (82)
T 1zzk_A 6 IITTQVTIP-------KDLAGSIIGKGGQRIKQIRHESGASIKIDEPL----------EG----SEDRIITITGT-QD-- 61 (82)
T ss_dssp CEEEEEEEE-------TTTGGGGTCGGGHHHHHHHHHHCCEEEECCTT----------SC----SSEEEEEEEEC-HH--
T ss_pred eEEEEEEEC-------hHhcCeeECCCchHHHHHHHHHCCEEEEcCCC----------CC----CCceEEEEEeC-HH--
Confidence 456779998 47899999999999999999999999997420 11 12347888884 43
Q ss_pred HHHHHHHHHHHHHhccC
Q 030537 105 INSRLDHAVAILENLLK 121 (175)
Q Consensus 105 ~~~~l~~A~e~Ie~lL~ 121 (175)
.+++|.++|+.++.
T Consensus 62 ---~v~~A~~~I~~~i~ 75 (82)
T 1zzk_A 62 ---QIQNAQYLLQNSVK 75 (82)
T ss_dssp ---HHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHH
Confidence 68999999999875
No 14
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.85 E-value=1.3e-09 Score=75.53 Aligned_cols=71 Identities=15% Similarity=0.251 Sum_probs=56.6
Q ss_pred eEEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhh
Q 030537 25 KRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDI 104 (175)
Q Consensus 25 k~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~ 104 (175)
+.+.++.|| -+++|.|||++|.++|+|+++|||+|.|.... + ...+=.|.|++. ++
T Consensus 4 ~~~~~i~Ip-------~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~----------~----~~~~~~v~I~G~-~~-- 59 (76)
T 2p2r_A 4 TTSHELTIP-------NDLIGCIIGRQGAKINEIRQMSGAQIKIANPV----------E----GSTDRQVTITGS-AA-- 59 (76)
T ss_dssp CEEEEEEEE-------HHHHHHHHCGGGHHHHHHHHHHCCEEEECCCC----------T----TCSEEEEEEEEC-HH--
T ss_pred ceEEEEEEC-------hHHcceEECCCChHHHHHHHHHCCEEEEcCCC----------C----CCCeEEEEEEeC-HH--
Confidence 456788998 58999999999999999999999999997521 1 123447888886 43
Q ss_pred HHHHHHHHHHHHHhccCC
Q 030537 105 INSRLDHAVAILENLLKP 122 (175)
Q Consensus 105 ~~~~l~~A~e~Ie~lL~p 122 (175)
.+++|.++|+.+|..
T Consensus 60 ---~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 60 ---SISLAQYLINVRLSS 74 (76)
T ss_dssp ---HHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHHHc
Confidence 689999999998863
No 15
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.83 E-value=3.8e-09 Score=72.83 Aligned_cols=66 Identities=18% Similarity=0.331 Sum_probs=52.9
Q ss_pred EEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhHH
Q 030537 27 VIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDIIN 106 (175)
Q Consensus 27 ~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~~ 106 (175)
+..+.|| ..++|+||||+|.++++|+++|||+|.|--.|+ .+=-|.|++. ++
T Consensus 6 ~~~i~I~-------~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~----------------~~~~V~I~G~-~~---- 57 (71)
T 1vig_A 6 YVEINID-------HKFHRHLIGKSGANINRIKDQYKVSVRIPPDSE----------------KSNLIRIEGD-PQ---- 57 (71)
T ss_dssp EEEEEEC-------SSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCS----------------SSEEEEEEES-SH----
T ss_pred EEEEEEC-------HHHhhhhcCCCCccHHHHHHHHCCEEEECCCCC----------------cccEEEEEcC-HH----
Confidence 4567887 578999999999999999999999999975442 1126888887 33
Q ss_pred HHHHHHHHHHHhccC
Q 030537 107 SRLDHAVAILENLLK 121 (175)
Q Consensus 107 ~~l~~A~e~Ie~lL~ 121 (175)
.+++|.++|+.++.
T Consensus 58 -~v~~A~~~I~~i~~ 71 (71)
T 1vig_A 58 -GVQQAKRELLELAS 71 (71)
T ss_dssp -HHHHHHHHHHHTCC
T ss_pred -HHHHHHHHHHHHhC
Confidence 68999999998863
No 16
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.82 E-value=2.5e-09 Score=76.52 Aligned_cols=70 Identities=17% Similarity=0.300 Sum_probs=55.1
Q ss_pred eEEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhh
Q 030537 25 KRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDI 104 (175)
Q Consensus 25 k~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~ 104 (175)
+.+.+|.|| -+++|+|||++|.|+|+|+++|||+|.|...- ++ ..+=.|.|++. ++
T Consensus 13 ~~~~~i~Ip-------~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~----------~~----~~~~~v~I~G~-~e-- 68 (89)
T 1j5k_A 13 IITTQVTIP-------KDLAGSIIGKGGQRIKQIRHESGASIKIDEPL----------EG----SEDRIITITGT-QD-- 68 (89)
T ss_dssp EEEEEEEEE-------HHHHHHHHCGGGHHHHHHHHHTCCEEEECSCC----------SS----SSEEEEEEEEE-HH--
T ss_pred eEEEEEEEC-------hhhcceeECCCCHhHHHHHHHhCCeEEecCCC----------CC----CCccEEEEEcC-HH--
Confidence 556778998 58999999999999999999999999997411 11 12346888876 43
Q ss_pred HHHHHHHHHHHHHhccC
Q 030537 105 INSRLDHAVAILENLLK 121 (175)
Q Consensus 105 ~~~~l~~A~e~Ie~lL~ 121 (175)
.+++|+++|++++.
T Consensus 69 ---~v~~A~~~I~~~i~ 82 (89)
T 1j5k_A 69 ---QIQNAQYLLQNSVK 82 (89)
T ss_dssp ---HHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHH
Confidence 68899999999875
No 17
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.79 E-value=2.9e-09 Score=78.80 Aligned_cols=72 Identities=19% Similarity=0.299 Sum_probs=58.6
Q ss_pred CceeEEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCc
Q 030537 22 PVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFP 101 (175)
Q Consensus 22 ~~~k~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~ 101 (175)
+++..+..|.|| ..++|+||||+|.|+|+|+++|||+|.|--.|+ ++=.|.|++..
T Consensus 13 ~~ap~~~~i~Ip-------~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~----------------~~~~V~I~G~~- 68 (104)
T 2ctk_A 13 ALVPVTIEVEVP-------FDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL----------------QSDIIAITGLA- 68 (104)
T ss_dssp CSSCEEEEEECC-------HHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT----------------TCCEEEEEECH-
T ss_pred hhCCEEEEEEEC-------hHHccceeCCCchHHHHHHHHHCCEEEecCCCC----------------CcceEEEEcCH-
Confidence 445577889998 689999999999999999999999999975442 11278898864
Q ss_pred hhhHHHHHHHHHHHHHhccCC
Q 030537 102 EDIINSRLDHAVAILENLLKP 122 (175)
Q Consensus 102 ~~~~~~~l~~A~e~Ie~lL~p 122 (175)
+ .+++|+++|+.++..
T Consensus 69 e-----~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 69 A-----NLDRAKAGLLERVKE 84 (104)
T ss_dssp H-----HHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHhh
Confidence 3 689999999999864
No 18
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.79 E-value=3e-09 Score=77.02 Aligned_cols=68 Identities=13% Similarity=0.158 Sum_probs=54.2
Q ss_pred eEEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhh
Q 030537 25 KRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDI 104 (175)
Q Consensus 25 k~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~ 104 (175)
..+..|.|| ..++|.||||+|.|+|+|+++|||+|.|-..++ +.=.|.|++. ++
T Consensus 16 ~~t~~i~Ip-------~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~----------------~~~~V~I~G~-~e-- 69 (94)
T 2cte_A 16 QASATVAIP-------KEHHRFVIGKNGEKLQDLELKTATKIQIPRPDD----------------PSNQIKITGT-KE-- 69 (94)
T ss_dssp CEEEEEECC-------TTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTS----------------SCCEEEEEEC-HH--
T ss_pred ceEEEEEEC-------hHHeeeeECCCChhHHHHHHHHCCEEEeCCCCC----------------CCCeEEEEEC-HH--
Confidence 356778888 478899999999999999999999999964221 1127889887 43
Q ss_pred HHHHHHHHHHHHHhccC
Q 030537 105 INSRLDHAVAILENLLK 121 (175)
Q Consensus 105 ~~~~l~~A~e~Ie~lL~ 121 (175)
.+++|.++|+.++.
T Consensus 70 ---~v~~A~~~I~~i~~ 83 (94)
T 2cte_A 70 ---GIEKARHEVLLISA 83 (94)
T ss_dssp ---HHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhh
Confidence 68899999998874
No 19
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.78 E-value=2.9e-09 Score=79.20 Aligned_cols=68 Identities=22% Similarity=0.379 Sum_probs=54.0
Q ss_pred EEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhHH
Q 030537 27 VIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDIIN 106 (175)
Q Consensus 27 ~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~~ 106 (175)
+.+|.|| -+++|+|||++|+|+|+|+++|||+|.|..... .+.+-.|.|++. ++
T Consensus 12 ~~~i~Ip-------~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~--------------~~~er~V~I~G~-~e---- 65 (106)
T 2hh3_A 12 GIDVPVP-------RHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG--------------TGPEKIAHIMGP-PD---- 65 (106)
T ss_dssp CEEEEEE-------TTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCS--------------SSSEEEEEEESS-HH----
T ss_pred EEEEEEC-------HHHcCccCCCCcHHHHHHHHHHCcEEEEecCCC--------------CCceeEEEEEeC-HH----
Confidence 5678898 478999999999999999999999999974220 122447888865 33
Q ss_pred HHHHHHHHHHHhccC
Q 030537 107 SRLDHAVAILENLLK 121 (175)
Q Consensus 107 ~~l~~A~e~Ie~lL~ 121 (175)
.+++|+++|++++.
T Consensus 66 -~v~~A~~~I~~ii~ 79 (106)
T 2hh3_A 66 -RCEHAARIINDLLQ 79 (106)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHh
Confidence 68999999999885
No 20
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.77 E-value=2.8e-09 Score=73.73 Aligned_cols=68 Identities=21% Similarity=0.245 Sum_probs=55.0
Q ss_pred eEEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhh
Q 030537 25 KRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDI 104 (175)
Q Consensus 25 k~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~ 104 (175)
....++.|| -+.+|.|||++|.++|+|+++|||+|.|-..|+ .+=-|.|++. ++
T Consensus 4 ~~~~~i~ip-------~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~----------------~er~v~I~G~-~~-- 57 (73)
T 2axy_A 4 TLTIRLLMH-------GKEVGSIIGKKGESVKKMREESGARINISEGNC----------------PERIITLAGP-TN-- 57 (73)
T ss_dssp CEEEEEEEE-------HHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCC----------------SEEEEEEEEC-HH--
T ss_pred eEEEEEEEC-------hhHeeeEECCCCHHHHHHHHHHCCEEEEecCCC----------------CcEEEEEEeC-HH--
Confidence 456788998 589999999999999999999999999985431 1225788876 43
Q ss_pred HHHHHHHHHHHHHhccC
Q 030537 105 INSRLDHAVAILENLLK 121 (175)
Q Consensus 105 ~~~~l~~A~e~Ie~lL~ 121 (175)
.+.+|+++|..+|.
T Consensus 58 ---~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 58 ---AIFKAFAMIIDKLE 71 (73)
T ss_dssp ---HHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHh
Confidence 68899999998875
No 21
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.65 E-value=1.9e-08 Score=73.45 Aligned_cols=70 Identities=7% Similarity=0.133 Sum_probs=54.0
Q ss_pred EEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhH
Q 030537 26 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDII 105 (175)
Q Consensus 26 ~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~ 105 (175)
.+..|.|| -.++|+||||+|.|+|+|+++|||+|.|--.|. ++ ...-.|.|++. .+
T Consensus 17 ~~~~i~Ip-------~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~---------~~----~~~~~V~I~G~-~e--- 72 (97)
T 2ctl_A 17 FKLSVTVD-------PKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD---------GN----QPQDQITITGY-EK--- 72 (97)
T ss_dssp CEEEEECC-------TTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT---------CS----SCSSEEEEESC-HH---
T ss_pred eeEEEEEC-------HHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC---------CC----CCccEEEEEeC-HH---
Confidence 45678888 478999999999999999999999999975542 10 12336888875 33
Q ss_pred HHHHHHHHHHHHhccC
Q 030537 106 NSRLDHAVAILENLLK 121 (175)
Q Consensus 106 ~~~l~~A~e~Ie~lL~ 121 (175)
.+.+|.++|+.++.
T Consensus 73 --~v~~A~~~I~~iv~ 86 (97)
T 2ctl_A 73 --NTEAARDAILRIVG 86 (97)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHH
Confidence 67889999988864
No 22
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.64 E-value=1.7e-08 Score=73.55 Aligned_cols=68 Identities=18% Similarity=0.293 Sum_probs=53.3
Q ss_pred EEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhH
Q 030537 26 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDII 105 (175)
Q Consensus 26 ~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~ 105 (175)
.+..+.|| ..++|+||||+|.|+|+|+++|||+|.|-..|+. .+=.|.|++. ++
T Consensus 17 vt~~i~Ip-------~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~---------------~~~~V~I~G~-~e--- 70 (95)
T 2ctm_A 17 VSEDVPLD-------HRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAP---------------DPNCVTVTGL-PE--- 70 (95)
T ss_dssp CCEEEECC-------TTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCS---------------CTTEEEEESC-HH---
T ss_pred EEEEEEEC-------HHHccccCCCCcchHHHHHHHHCCeEEecCCCCC---------------CCcEEEEEcC-HH---
Confidence 45678888 4678999999999999999999999999765531 1236888876 33
Q ss_pred HHHHHHHHHHHHhccC
Q 030537 106 NSRLDHAVAILENLLK 121 (175)
Q Consensus 106 ~~~l~~A~e~Ie~lL~ 121 (175)
.+++|+++|+.|+.
T Consensus 71 --~v~~A~~~I~~i~~ 84 (95)
T 2ctm_A 71 --NVEEAIDHILNLEE 84 (95)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHH
Confidence 57888888888764
No 23
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.57 E-value=3.2e-08 Score=76.55 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=58.2
Q ss_pred eEEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhh
Q 030537 25 KRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDI 104 (175)
Q Consensus 25 k~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~ 104 (175)
..+.++.|| -+++|+|||++|.|+|+|+++|||+|.|-..+. |+ .++.-.|.|++ +++
T Consensus 84 ~~~~~i~vp-------~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~---------~~---~~~~~~v~I~G-~~~-- 141 (163)
T 3krm_A 84 KLETHIRVP-------ASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQT---------PD---ENDQVIVKIIG-HFY-- 141 (163)
T ss_dssp CEEEEEEEE-------TTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCC---------CC---TTSEEEEEEEE-CHH--
T ss_pred ceEEEEEcC-------hhheeeEEcCCChHHHHHHHHhCCeEEECCCCC---------CC---CCCceEEEEEe-CHH--
Confidence 455689998 588999999999999999999999999976442 11 34444788988 443
Q ss_pred HHHHHHHHHHHHHhccCC
Q 030537 105 INSRLDHAVAILENLLKP 122 (175)
Q Consensus 105 ~~~~l~~A~e~Ie~lL~p 122 (175)
.+++|.++|+++|..
T Consensus 142 ---~v~~A~~~I~~~i~~ 156 (163)
T 3krm_A 142 ---ASQMAQRKIRDILAQ 156 (163)
T ss_dssp ---HHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHH
Confidence 689999999999863
No 24
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.44 E-value=2.9e-07 Score=70.81 Aligned_cols=72 Identities=15% Similarity=0.245 Sum_probs=54.9
Q ss_pred EEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhHH
Q 030537 27 VIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDIIN 106 (175)
Q Consensus 27 ~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~~ 106 (175)
+.++.|| -+++|+|||++|.|+|+|+++|||+|.|--.+.. + ...+-.|.|++ +++
T Consensus 3 ~~~~~Vp-------~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~--------~----~~~~r~v~I~G-~~~---- 58 (164)
T 2jvz_A 3 VQEIMIP-------AGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ--------N----TNVDKPLRIIG-DPY---- 58 (164)
T ss_dssp EEEEEEC-------TTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTS--------S----SSSCEEEEEEE-CHH----
T ss_pred EEEEEec-------hhheeEEECCChHHHHHHHHHhCCeEEEecCCCC--------C----CCCceEEEEEc-CHH----
Confidence 5678888 4789999999999999999999999999633210 1 12234678887 333
Q ss_pred HHHHHHHHHHHhccCCC
Q 030537 107 SRLDHAVAILENLLKPV 123 (175)
Q Consensus 107 ~~l~~A~e~Ie~lL~p~ 123 (175)
.+.+|.++|..++...
T Consensus 59 -~v~~A~~~I~~ii~e~ 74 (164)
T 2jvz_A 59 -KVQQACEMVMDILRER 74 (164)
T ss_dssp -HHHHHHHHHHHHTTCS
T ss_pred -HHHHHHHHHHHHHHhc
Confidence 6889999999998754
No 25
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.43 E-value=1.5e-07 Score=73.71 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=53.3
Q ss_pred EEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhH
Q 030537 26 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDII 105 (175)
Q Consensus 26 ~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~ 105 (175)
.+.++.|| -+++|+|||++|.|+|+|+++|||+|.|-.... +. . ....=.|.|++ +++
T Consensus 104 ~~~~i~vp-------~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~---------~~-~-~~~~~~v~I~G-~~~--- 161 (174)
T 1j4w_A 104 QEFNFIVP-------TGKTGLIIGKGGETIKSISQQSGARIELQRNPP---------PN-A-DPNMKLFTIRG-TPQ--- 161 (174)
T ss_dssp CEEEEEEE-------TTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCT---------TT-S-CTTEEEEEEEC-CHH---
T ss_pred EEEEEEEC-------hHHcCeeECCCchHHHHHHHHHCCEEEECCCCC---------CC-C-CCCceEEEEEC-CHH---
Confidence 35678887 478999999999999999999999999986431 10 1 11223577877 433
Q ss_pred HHHHHHHHHHHHhcc
Q 030537 106 NSRLDHAVAILENLL 120 (175)
Q Consensus 106 ~~~l~~A~e~Ie~lL 120 (175)
.+++|.++|+++|
T Consensus 162 --~v~~A~~~I~~~i 174 (174)
T 1j4w_A 162 --QIDYARQLIEEKI 174 (174)
T ss_dssp --HHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHhC
Confidence 6899999999875
No 26
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.38 E-value=9.8e-08 Score=69.64 Aligned_cols=66 Identities=12% Similarity=0.209 Sum_probs=52.5
Q ss_pred EEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhh-CceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhH
Q 030537 27 VIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMT-ECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDII 105 (175)
Q Consensus 27 ~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eT-gckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~ 105 (175)
+..|.|| ..+++.||||+|.|+++|+++| ||+|.|--.|+. .-.|.|.+.+.
T Consensus 18 t~~i~Ip-------~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~----------------~~~V~I~G~~~---- 70 (95)
T 2ctj_A 18 EVEVSIP-------AKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSG----------------SDTVVIRGPSS---- 70 (95)
T ss_dssp CEEEECC-------HHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTT----------------CCEEEEESCHH----
T ss_pred EEEEEEC-------HHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCC----------------cceEEEEcCHH----
Confidence 4557788 5788999999999999999999 999999755532 11688877542
Q ss_pred HHHHHHHHHHHHhccC
Q 030537 106 NSRLDHAVAILENLLK 121 (175)
Q Consensus 106 ~~~l~~A~e~Ie~lL~ 121 (175)
.+++|+++|+.|+.
T Consensus 71 --~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 71 --DVEKAKKQLLHLAE 84 (95)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHh
Confidence 68899999999874
No 27
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.35 E-value=1.6e-07 Score=72.28 Aligned_cols=67 Identities=22% Similarity=0.401 Sum_probs=52.2
Q ss_pred EEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhHHH
Q 030537 28 IRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDIINS 107 (175)
Q Consensus 28 ~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~~~ 107 (175)
.++.|| -+++|+|||++|.|+|+|+++|||+|.|-.... ...+=.|.|++. ++
T Consensus 93 ~~i~vp-------~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~--------------~~~~~~v~I~G~-~~----- 145 (164)
T 2jvz_A 93 IDVPVP-------RHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG--------------TGPEKIAHIMGP-PD----- 145 (164)
T ss_dssp BCCEEE-------TTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT--------------TSSEEEEEEESC-HH-----
T ss_pred EEEEEC-------hhhccccCCCCcHhHHHHHHHHCCeEEEeCCCC--------------CCCcEEEEEEcC-HH-----
Confidence 456777 489999999999999999999999999975321 112346778775 33
Q ss_pred HHHHHHHHHHhccC
Q 030537 108 RLDHAVAILENLLK 121 (175)
Q Consensus 108 ~l~~A~e~Ie~lL~ 121 (175)
.++.|.++|+.+|.
T Consensus 146 ~v~~A~~~I~~~i~ 159 (164)
T 2jvz_A 146 RCEHAARIINDLLQ 159 (164)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 68999999999875
No 28
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.34 E-value=2.3e-07 Score=67.74 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=53.7
Q ss_pred EEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCce-EEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhh
Q 030537 26 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECT-VFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDI 104 (175)
Q Consensus 26 ~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgck-I~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~ 104 (175)
....+.|| -.++|.+|||+|.|+|+|+++||++ |.|--. +=.|.|.+.+.+
T Consensus 15 ~i~~i~I~-------~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ed-------------------dG~V~I~g~~~e-- 66 (91)
T 2cpq_A 15 FHEEFVVR-------EDLMGLAIGTHGSNIQQARKVPGVTAIELDED-------------------TGTFRIYGESAD-- 66 (91)
T ss_dssp EEEEEECC-------HHHHHHHHTTTTHHHHHHHTSTTEEEEEEETT-------------------TTEEEEEESSHH--
T ss_pred eEEEEEEC-------hHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcC-------------------CCEEEEEECCHH--
Confidence 45667887 5789999999999999999999998 999521 127899998765
Q ss_pred HHHHHHHHHHHHHhccCC
Q 030537 105 INSRLDHAVAILENLLKP 122 (175)
Q Consensus 105 ~~~~l~~A~e~Ie~lL~p 122 (175)
.+++|.++|+.+-..
T Consensus 67 ---a~~~A~~~I~~ie~~ 81 (91)
T 2cpq_A 67 ---AVKKARGFLEFVEDF 81 (91)
T ss_dssp ---HHHHHHHHHSCCCCC
T ss_pred ---HHHHHHHHHHhhheE
Confidence 689999999877653
No 29
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.30 E-value=3e-07 Score=70.81 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=54.5
Q ss_pred EEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhH
Q 030537 26 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDII 105 (175)
Q Consensus 26 ~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~ 105 (175)
.+.++.|| -+++|+|||++|.++|+|+++|||+|.|.+.. .|+ ..+=.|.|++ +++
T Consensus 89 ~~~~i~vp-------~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~---------~~~----~~~~~v~I~G-~~~--- 144 (160)
T 2jzx_A 89 VTLRLVVP-------ASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM---------LPN----STERAITIAG-IPQ--- 144 (160)
T ss_dssp EEEEEEEE-------HHHHHHHHCGGGHHHHHHHHHHSSEECCCCCC---------STT----CCEEEEEEEE-CHH---
T ss_pred EEEEEEEC-------hhheeeEECCCCHHHHHHHHHhCCeEEECCCC---------CCC----CCceEEEEEc-CHH---
Confidence 56788998 58999999999999999999999999997521 111 2334688888 443
Q ss_pred HHHHHHHHHHHHhccC
Q 030537 106 NSRLDHAVAILENLLK 121 (175)
Q Consensus 106 ~~~l~~A~e~Ie~lL~ 121 (175)
.+++|.++|.++|.
T Consensus 145 --~v~~A~~~I~~~i~ 158 (160)
T 2jzx_A 145 --SIIECVKQICVVML 158 (160)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHh
Confidence 68899999988763
No 30
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.28 E-value=3.8e-07 Score=71.41 Aligned_cols=69 Identities=20% Similarity=0.360 Sum_probs=53.1
Q ss_pred EEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhHH
Q 030537 27 VIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDIIN 106 (175)
Q Consensus 27 ~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~~ 106 (175)
+.++.|| -+++|+|||++|.++|+|+++|||+|.|...- + ...+-.|.|++. ++
T Consensus 4 ~~~~~vp-------~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~----------~----~~~~r~v~I~G~-~~---- 57 (174)
T 1j4w_A 4 MIDVPIP-------RFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD----------G----TTPERIAQITGP-PD---- 57 (174)
T ss_dssp EEEEEEE-------HHHHHHHHCGGGHHHHHHHHHHCCEEEEECCT----------T----SCSEEEEEEEEC-HH----
T ss_pred EEEEEEC-------hhheeeeecCCchHHHHHHHHhCCEEEEecCC----------C----CCCccEEEEEeC-HH----
Confidence 4678888 58999999999999999999999999996311 0 122336778775 32
Q ss_pred HHHHHHHHHHHhccCC
Q 030537 107 SRLDHAVAILENLLKP 122 (175)
Q Consensus 107 ~~l~~A~e~Ie~lL~p 122 (175)
.+.+|+++|.++|..
T Consensus 58 -~v~~A~~~I~~~~~~ 72 (174)
T 1j4w_A 58 -RAQHAAEIITDLLRS 72 (174)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHh
Confidence 688999999988853
No 31
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.26 E-value=4.6e-07 Score=69.80 Aligned_cols=68 Identities=22% Similarity=0.256 Sum_probs=52.4
Q ss_pred eeEEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchh
Q 030537 24 VKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPED 103 (175)
Q Consensus 24 ~k~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~ 103 (175)
...+.++.|| -.++|.|||++|.++|+|+++|||+|.|-..|+ ..-.|.|++. ++
T Consensus 3 ~~~~~~~~vp-------~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~----------------~~r~v~I~G~-~~- 57 (160)
T 2jzx_A 3 VTLTIRLLMH-------GKEVGSIIGKKGESVKKMREESGARINISEGNC----------------PERIITLAGP-TN- 57 (160)
T ss_dssp CEEEEEEEEE-------HHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTT----------------TEEEEEEEEE-HH-
T ss_pred ccEEEEEEEc-------hhheeeeECCCcHHHHHHHHHHCCEEEEcCCCC----------------CceEEEEEeC-HH-
Confidence 3567889998 689999999999999999999999999985431 1236778775 22
Q ss_pred hHHHHHHHHHHHHHhcc
Q 030537 104 IINSRLDHAVAILENLL 120 (175)
Q Consensus 104 ~~~~~l~~A~e~Ie~lL 120 (175)
.+.+|..+|.+++
T Consensus 58 ----~v~~A~~~I~~~i 70 (160)
T 2jzx_A 58 ----AIFKAFAMIIDKL 70 (160)
T ss_dssp ----HHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHH
Confidence 5677777776654
No 32
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.21 E-value=5.1e-07 Score=70.78 Aligned_cols=74 Identities=12% Similarity=0.201 Sum_probs=54.5
Q ss_pred EEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhH
Q 030537 26 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDII 105 (175)
Q Consensus 26 ~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~ 105 (175)
.+.++.|| -.++|+|||++|.++|+|+++|||+|.|...+.. .|+ .. .=-|.|++. +
T Consensus 6 ~~~~i~vp-------~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~-------~~~---~~-er~v~I~G~-~---- 62 (178)
T 2anr_A 6 YFLKVLIP-------SYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF-------YPG---TT-ERVCLIQGT-I---- 62 (178)
T ss_dssp EEEEEEEE-------HHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCB-------CTT---SS-EEEEEEEEC-H----
T ss_pred EEEEEEEC-------hhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCC-------CCC---CC-CceEEEEeC-H----
Confidence 46778998 5899999999999999999999999999743311 111 11 224667764 2
Q ss_pred HHHHHHHHHHHHhccCCC
Q 030537 106 NSRLDHAVAILENLLKPV 123 (175)
Q Consensus 106 ~~~l~~A~e~Ie~lL~p~ 123 (175)
..+.+|.++|.+++...
T Consensus 63 -~~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 63 -EALNAVHGFIAEKIREM 79 (178)
T ss_dssp -HHHHHHHHHHHHHHTCC
T ss_pred -HHHHHHHHHHHHHHhcc
Confidence 26788999999888653
No 33
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.19 E-value=3.8e-07 Score=71.49 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=54.6
Q ss_pred EEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhH
Q 030537 26 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDII 105 (175)
Q Consensus 26 ~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~ 105 (175)
.+.++.|| .+++|+|||++|.|+|+|+++|||+|.|-..... + ...+=.|.|++..
T Consensus 104 ~~~~i~Vp-------~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~--------~----~~~~~~v~I~G~~----- 159 (178)
T 2anr_A 104 NQVKIIVP-------NSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG--------I----NLQNRVVTVSGEP----- 159 (178)
T ss_dssp GEEEEEEE-------HHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----------------CCEEEEEEESSH-----
T ss_pred eEEEEEEc-------hhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCC--------C----CCCceEEEEEcCH-----
Confidence 46788998 6899999999999999999999999999753210 1 1122357777653
Q ss_pred HHHHHHHHHHHHhccCC
Q 030537 106 NSRLDHAVAILENLLKP 122 (175)
Q Consensus 106 ~~~l~~A~e~Ie~lL~p 122 (175)
..+.+|+++|.++|..
T Consensus 160 -~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 160 -EQNRKAVELIIQKIQE 175 (178)
T ss_dssp -HHHHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHHHHHHh
Confidence 2689999999998864
No 34
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.13 E-value=1.7e-06 Score=66.81 Aligned_cols=68 Identities=19% Similarity=0.283 Sum_probs=50.0
Q ss_pred EEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhHH
Q 030537 27 VIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDIIN 106 (175)
Q Consensus 27 ~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~~ 106 (175)
+.++.|| -+++|.|||++|.|+|+|+++|||+|.|--.+. |+ ..+--|.|++ +++
T Consensus 4 ~~~~~ip-------~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~---------~~----~~~r~v~I~G-~~e---- 58 (163)
T 3krm_A 4 MVQVFIP-------AQAVGAIIGKKGQHIKQLSRFASASIKIAPPET---------PD----SKVRMVIITG-PPE---- 58 (163)
T ss_dssp EEEEEEE-------GGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSS---------TT----CSEEEEEEEE-CHH----
T ss_pred EEEEEec-------hhhcceeECCCcHHHHHHHHHHCCeEEEcCCCC---------CC----CCceEEEEEc-CHH----
Confidence 5678888 588999999999999999999999999985431 11 2233577777 433
Q ss_pred HHHHHHHHHHHhcc
Q 030537 107 SRLDHAVAILENLL 120 (175)
Q Consensus 107 ~~l~~A~e~Ie~lL 120 (175)
.+.+|..+|..++
T Consensus 59 -~v~~A~~~I~~~~ 71 (163)
T 3krm_A 59 -AQFKAQGRIYGKL 71 (163)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH
Confidence 4566776666654
No 35
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.10 E-value=1.4e-06 Score=81.98 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=55.4
Q ss_pred CCceeEEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeC
Q 030537 21 APVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEF 100 (175)
Q Consensus 21 ~~~~k~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~ 100 (175)
++.......+.|| -..||.||||+|.|+|.|+++|||+|.|--.| .|.|.+.+
T Consensus 562 ~~~ap~~~~~~I~-------~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~G--------------------~V~I~~~~ 614 (630)
T 3u1k_A 562 KENGPVVETVQVP-------LSKRAKFVGPGGYNLKKLQAETGVTISQVDEE--------------------TFSVFAPT 614 (630)
T ss_dssp CTTCCEEEEEECC-------HHHHHHHHCGGGHHHHHHHHHHCCEEEECSSS--------------------EEEEEESS
T ss_pred cccCCeEEEEEeC-------hhHhheeECCCChhHHHHHHHHCCEEEEcCCc--------------------EEEEEeCC
Confidence 4455556778888 57899999999999999999999999997433 78999988
Q ss_pred chhhHHHHHHHHHHHHHhcc
Q 030537 101 PEDIINSRLDHAVAILENLL 120 (175)
Q Consensus 101 ~~~~~~~~l~~A~e~Ie~lL 120 (175)
.+ .+++|+++|+.|+
T Consensus 615 ~~-----~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 615 PS-----AMHEARDFITEIC 629 (630)
T ss_dssp HH-----HHHHHHHHTTC--
T ss_pred HH-----HHHHHHHHHHHHh
Confidence 64 7899999999876
No 36
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.87 E-value=6.4e-06 Score=67.12 Aligned_cols=70 Identities=21% Similarity=0.270 Sum_probs=50.9
Q ss_pred ceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhHHHHHHHHHHHHHhccC
Q 030537 42 NFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLK 121 (175)
Q Consensus 42 NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~~~~l~~A~e~Ie~lL~ 121 (175)
..+|||||+.|.|+|.||..|||+|.|-|+ .|.|.+. ++ .++.|...|+.|+.
T Consensus 107 r~~GrIIGk~G~tik~iE~~Tg~~I~v~~~---------------------~v~i~G~-~~-----~i~~Ar~~i~~li~ 159 (191)
T 1tua_A 107 RIKGRIIGEGGRARRTIEEMTDTYINVGEY---------------------EVAIIGD-YE-----RAMAAKQAIEMLAE 159 (191)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTCEEEECSS---------------------EEEEEEE-HH-----HHHHHHHHHHHHHT
T ss_pred HHhhheeCCCccHHHHHHHHHCceEEEcCC---------------------EEEEEeC-hH-----HHHHHHHHHHHHHc
Confidence 468999999999999999999999999752 3555543 22 57899999999986
Q ss_pred CC-C--------cchHHHHHHHHHHH
Q 030537 122 PV-D--------ESLDHYKKQQLREF 138 (175)
Q Consensus 122 p~-~--------e~~de~K~~QL~eL 138 (175)
-. + ....++|++.|++|
T Consensus 160 g~~h~~vy~~~~~~~~~~k~~~~~~~ 185 (191)
T 1tua_A 160 GRMHSTVYRHLERIMREIKRRERLKM 185 (191)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 42 2 12235566666544
No 37
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.65 E-value=2e-05 Score=65.27 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=53.1
Q ss_pred CceeEEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCc
Q 030537 22 PVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFP 101 (175)
Q Consensus 22 ~~~k~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~ 101 (175)
+......++.|| -+.+|.||||+|.|++.|+++|||+|.|--. .=.|.|.+.+.
T Consensus 30 ~~aP~i~~i~IP-------~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~-------------------~g~V~I~~~~~ 83 (219)
T 2e3u_A 30 EFFKQEEYVKIP-------KDRIAVLIGKKGQTKKEIEKRTKTKITIDSE-------------------TGEVWITSTKE 83 (219)
T ss_dssp ---CCEEEEECC-------HHHHHHHHCGGGHHHHHHHHHHTEEEEECTT-------------------TCEEEEEECTT
T ss_pred CCCCEEEEEEeC-------HHHhhhhhcccHHHHHHHHHHHCcEEEEEcC-------------------CCEEEEecCCC
Confidence 444556789998 5789999999999999999999999999621 11467776541
Q ss_pred hhhHHHHHHHHHHHHHhccC
Q 030537 102 EDIINSRLDHAVAILENLLK 121 (175)
Q Consensus 102 ~~~~~~~l~~A~e~Ie~lL~ 121 (175)
... ...+++|.++|+.+..
T Consensus 84 t~d-~~~i~kA~~~I~~i~r 102 (219)
T 2e3u_A 84 TED-PLAVWKARDIVLAIGR 102 (219)
T ss_dssp CCS-HHHHHHHHHHHHHHHT
T ss_pred CCC-HHHHHHHHHHHHHHhc
Confidence 000 1278999999999884
No 38
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.59 E-value=2e-05 Score=65.23 Aligned_cols=53 Identities=25% Similarity=0.380 Sum_probs=44.1
Q ss_pred eeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhHHHHHHHHHHHHHhccCC
Q 030537 43 FVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLKP 122 (175)
Q Consensus 43 fvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~~~~l~~A~e~Ie~lL~p 122 (175)
.+|||||++|.|+|.||..|||+|.|-| . .|.|.+.- ..++.|...|++|+.-
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~-------------------~--~v~i~G~~------~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYG-------------------K--TVAIIGNP------IQIEIAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEET-------------------T--EEEEEECH------HHHHHHHHHHHHHHTT
T ss_pred hhheeECCCchHHHHHHHHhCceEEECC-------------------e--EEEEEeCH------HHHHHHHHHHHHHHcC
Confidence 5999999999999999999999999964 1 36666642 2678999999999964
No 39
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.57 E-value=1.2e-05 Score=76.85 Aligned_cols=70 Identities=14% Similarity=0.281 Sum_probs=13.3
Q ss_pred CceeEEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCc
Q 030537 22 PVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFP 101 (175)
Q Consensus 22 ~~~k~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~ 101 (175)
+.......+.|| ...+|.+|||+|.|+|.|+++||++|.|--.| .|.|.+.+.
T Consensus 566 ~~ap~~~~~~i~-------~~ki~~vig~gg~~i~~i~~~tg~~idi~ddG--------------------~v~I~~~~~ 618 (726)
T 4aid_A 566 DFAPKIETINIP-------TDKIREVIGSGGKVIREIVATTGAKVDINDDG--------------------VVKVSASDG 618 (726)
T ss_dssp SSCCC----------------------------------------------------------------------CCSCH
T ss_pred ccCCeEEEEeCC-------HHHHHhhcCCCchhHHHHHHHHCCceeEECCc--------------------eEEEEeCCH
Confidence 333445667777 46799999999999999999999999987544 567877775
Q ss_pred hhhHHHHHHHHHHHHHhccCCC
Q 030537 102 EDIINSRLDHAVAILENLLKPV 123 (175)
Q Consensus 102 ~~~~~~~l~~A~e~Ie~lL~p~ 123 (175)
+ .+++|++.|+.++..+
T Consensus 619 ~-----~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 619 A-----KIKAAIDWIKSITDEA 635 (726)
T ss_dssp H-----HHHHHHHC--------
T ss_pred H-----HHHHHHHHHHHHhhhh
Confidence 4 7899999999998654
No 40
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=97.45 E-value=8e-05 Score=57.38 Aligned_cols=72 Identities=18% Similarity=0.282 Sum_probs=52.2
Q ss_pred EEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCc-eEEEeccCCCCCccccCCCCCCCCCCCc-EEEEEeeCchhhH
Q 030537 28 IRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTEC-TVFIRGQSSVKDSLKEGKIRYEHLNEPL-HVLGEAEFPEDII 105 (175)
Q Consensus 28 ~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgc-kI~IRGkGS~k~~~~e~~p~~e~~~epL-HV~Isa~~~~~~~ 105 (175)
..|.|| -+.+|++||-+|.|+|.+++.||| +|.|.+..... . ..++.+ -|.|++.-
T Consensus 69 ~~v~Vp-------~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~---------~-~~~~~~~~vtI~G~~----- 126 (144)
T 2qnd_A 69 DVIQVP-------RNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKN---------V-PQEEGMVPFVFVGTK----- 126 (144)
T ss_dssp EEEEEE-------GGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTC---------C-CCCTTEEEEEEEEEH-----
T ss_pred EEEEEC-------HHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCC---------c-cccCCeeEEEEEeCH-----
Confidence 567777 378999999999999999999997 99998643210 0 012222 36677653
Q ss_pred HHHHHHHHHHHHhccCC
Q 030537 106 NSRLDHAVAILENLLKP 122 (175)
Q Consensus 106 ~~~l~~A~e~Ie~lL~p 122 (175)
..++.|.++|+..|..
T Consensus 127 -~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 127 -DSIANATVLLDYHLNY 142 (144)
T ss_dssp -HHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHh
Confidence 2689999999988753
No 41
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=96.86 E-value=0.0018 Score=57.56 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=52.9
Q ss_pred eEEEEEEccCCCCCCCcceeEEEeCCCC--chHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCch
Q 030537 25 KRVIRLDVPVDKYPNQFNFVGRILGPRG--NSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPE 102 (175)
Q Consensus 25 k~~~Ki~IPv~~yP~~~NfvGrIiGPrG--~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~ 102 (175)
+.+.++.|| ..|.+.|||.+| +++++|.++|||+|.+=..++-+. .+ ....=-|.|++.-
T Consensus 29 ~VTl~v~Ip-------~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~-----~~----~~ks~~VtItG~~-- 90 (376)
T 3n89_A 29 RVTLNMEFE-------SQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGT-----TP----DPFAQQVTITGYF-- 90 (376)
T ss_dssp EEEEEEECC-------GGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSS-----SC----CTTTTEEEEEEEH--
T ss_pred EEEEEEEEc-------hhhhhhhccCCChHHHHHHHHHHhCCeEECCCCccccc-----CC----cCCCCeEEEEcCH--
Confidence 456778888 678888999999 999999999999999964431110 00 0111157887763
Q ss_pred hhHHHHHHHHHHHHHhcc
Q 030537 103 DIINSRLDHAVAILENLL 120 (175)
Q Consensus 103 ~~~~~~l~~A~e~Ie~lL 120 (175)
+.+++|.+.|..++
T Consensus 91 ----enVE~AR~~I~~l~ 104 (376)
T 3n89_A 91 ----GDVDRARMLMRRNC 104 (376)
T ss_dssp ----HHHHHHHHHHHHSC
T ss_pred ----HHHHHHHHHHHhcC
Confidence 36889999998863
No 42
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=96.74 E-value=0.0014 Score=47.94 Aligned_cols=64 Identities=17% Similarity=0.264 Sum_probs=46.8
Q ss_pred EEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhh-hCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhh
Q 030537 26 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAM-TECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDI 104 (175)
Q Consensus 26 ~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~e-TgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~ 104 (175)
.+.+|.|| -.|-+.|||++|+|+|+|+++ +++.|.+=. + ++ -|.|++. .
T Consensus 27 ~t~~i~vp-------~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-~-----------------~~-~ItI~G~--~-- 76 (102)
T 2ctf_A 27 TVSSVAAP-------SWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-G-----------------ED-KITLEGP--T-- 76 (102)
T ss_dssp EEEEEECC-------STTHHHHHTTTTCHHHHHHHHCSSSEEEECS-S-----------------SC-EEEEEEC--H--
T ss_pred EEEEEEeC-------HHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-C-----------------CC-EEEEECC--H--
Confidence 45778888 356678999999999999996 688886652 0 11 5677665 2
Q ss_pred HHHHHHHHHHHHHhccC
Q 030537 105 INSRLDHAVAILENLLK 121 (175)
Q Consensus 105 ~~~~l~~A~e~Ie~lL~ 121 (175)
..+++|.+.|+.++.
T Consensus 77 --~~V~~a~~~I~~~v~ 91 (102)
T 2ctf_A 77 --EDVSVAQEQIEGMVK 91 (102)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHH
Confidence 257888888888774
No 43
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=96.51 E-value=0.00099 Score=51.17 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=29.4
Q ss_pred EEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEE
Q 030537 26 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFI 68 (175)
Q Consensus 26 ~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~I 68 (175)
.++++.|| -.++|.+||++|+++++|++++| |.|
T Consensus 4 ~~~~~~Vp-------~~~vG~~IG~~G~~I~~i~~e~g--I~i 37 (144)
T 2qnd_A 4 FHEQFIVR-------EDLMGLAIGTHGANIQQARKVPG--VTA 37 (144)
T ss_dssp CEEEEECC-------GGGHHHHHCGGGHHHHHHHTSTT--EEE
T ss_pred eEEEEEEC-------CcceeeEECCChhHHHHHHHHHC--CeE
Confidence 46778887 48899999999999999999999 544
No 44
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=96.34 E-value=0.00059 Score=65.08 Aligned_cols=67 Identities=18% Similarity=0.266 Sum_probs=0.0
Q ss_pred ceeEEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCch
Q 030537 23 VVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPE 102 (175)
Q Consensus 23 ~~k~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~ 102 (175)
.......+-|| ...+|.+|||+|.|++.|.++||++|.|.+.| .|+|++.+.+
T Consensus 557 ~ap~~~~~~i~-------~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~dg--------------------~v~I~~~~~~ 609 (723)
T 3cdi_A 557 FAPRIHTIKIN-------PDKIKDVIGKGGSVIRALTEETGTTIEIEDDG--------------------TVKIAATDGE 609 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCceEEEEEEC-------HHHhcccccccceeeeeeehhhCceEEecCCc--------------------cEEEecCCHH
Confidence 33444556666 35788999999999999999999999998755 4566665543
Q ss_pred hhHHHHHHHHHHHHHhccC
Q 030537 103 DIINSRLDHAVAILENLLK 121 (175)
Q Consensus 103 ~~~~~~l~~A~e~Ie~lL~ 121 (175)
.+++|.+.|+.++.
T Consensus 610 -----~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 610 -----KAKHAIRRIEEITA 623 (723)
T ss_dssp -------------------
T ss_pred -----HHHHHHHHHHHHhh
Confidence 45677777776654
No 45
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=95.49 E-value=0.00054 Score=65.69 Aligned_cols=64 Identities=19% Similarity=0.397 Sum_probs=20.1
Q ss_pred EEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhH
Q 030537 26 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDII 105 (175)
Q Consensus 26 ~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~ 105 (175)
....+-||. ..+|.+|||+|.++|.|+++||++|.|-..| .|+|++.+.+
T Consensus 598 ~~~~~~I~~-------~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG--------------------~v~Is~~~~~--- 647 (757)
T 1e3p_A 598 RIITVKIPV-------DKIGEVIGPKRQMINQIQEDTGAEITIEDDG--------------------TIYIGAADGP--- 647 (757)
T ss_dssp BCCCC-------------------------CTTCCCCCSCC----------------------------CCCBSSHH---
T ss_pred eeEEEEECh-------HHeehcccccceeeehhhHhhCCEEEecCCc--------------------eEEEecCCHH---
Confidence 334466773 5678899999999999999999999988644 4566665543
Q ss_pred HHHHHHHHHHHHhccC
Q 030537 106 NSRLDHAVAILENLLK 121 (175)
Q Consensus 106 ~~~l~~A~e~Ie~lL~ 121 (175)
++++|.+.|+.+..
T Consensus 648 --~~~~a~~~i~~i~~ 661 (757)
T 1e3p_A 648 --AAEAARATINGIAN 661 (757)
T ss_dssp --HHCC----------
T ss_pred --HHHHHHHHHHHhcc
Confidence 45677777777663
No 46
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=94.90 E-value=0.021 Score=46.27 Aligned_cols=71 Identities=21% Similarity=0.244 Sum_probs=49.0
Q ss_pred eEEEEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhh
Q 030537 25 KRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDI 104 (175)
Q Consensus 25 k~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~ 104 (175)
|.+.++.|| -+-+|.|+|..|.|.+.|++.+||+|.|-.+ ++ -|-|........
T Consensus 3 ~~~~~i~VP-------~~rvg~liGk~g~~~k~i~e~~g~~i~id~~----~~---------------~V~i~t~~~t~d 56 (191)
T 1tua_A 3 KPRIYVKVK-------PERLGAVIGPRGEVKAEIMRRTGTVITVDTE----NS---------------MVIVEPEAEGIP 56 (191)
T ss_dssp CCCEEEECC-------GGGHHHHHCGGGHHHHHHHHHHTEEEEEETT----TT---------------EEEEEESSTTSC
T ss_pred CcceEEECC-------HHHhhHHHhcCHhHHHHHHHHHCcEEEEEcC----CC---------------eEEEEeCCCCCC
Confidence 445678887 4789999999999999999999999999642 11 233442111000
Q ss_pred HHHHHHHHHHHHHhccCC
Q 030537 105 INSRLDHAVAILENLLKP 122 (175)
Q Consensus 105 ~~~~l~~A~e~Ie~lL~p 122 (175)
-..+.+|.++|..+...
T Consensus 57 -p~~i~KA~dlI~ai~rg 73 (191)
T 1tua_A 57 -PVNLMKAAEVVKAISLG 73 (191)
T ss_dssp -HHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHcC
Confidence 12689999999776543
No 47
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=94.23 E-value=0.032 Score=43.45 Aligned_cols=29 Identities=14% Similarity=0.368 Sum_probs=27.6
Q ss_pred cceeEEEeCCCCchHHHHHhhhCceEEEe
Q 030537 41 FNFVGRILGPRGNSLKRVEAMTECTVFIR 69 (175)
Q Consensus 41 ~NfvGrIiGPrG~TlK~ie~eTgckI~IR 69 (175)
-.+++.||||+|+.++.||..|++.|.|-
T Consensus 64 ~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~ 92 (140)
T 3v69_A 64 PRLLEIMFGKDGEHIPHLESMLHTLIHVN 92 (140)
T ss_dssp GGGHHHHHCGGGTTHHHHHHHHTSEEEEE
T ss_pred hhhhhcccCCCcCccchHHhhcceeEEEe
Confidence 57899999999999999999999999998
No 48
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=91.26 E-value=0.13 Score=45.60 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=41.2
Q ss_pred ceeEEEeCCCC--chHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhHHHHHHHHHHHHHhc
Q 030537 42 NFVGRILGPRG--NSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENL 119 (175)
Q Consensus 42 NfvGrIiGPrG--~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~~~~l~~A~e~Ie~l 119 (175)
-+...|||-+| .++++|.++|||+|..=..++..+. ..+.-.|.|++ .. +.+.+|.+.|+.+
T Consensus 195 ~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~----------~~~~~~ItItG--s~----e~V~~Ark~I~~l 258 (376)
T 3n89_A 195 YYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNET----------RGNIYEIKVVG--NI----DNVLKARRYIMDL 258 (376)
T ss_dssp GGHHHHTCCTTSCCHHHHHHHHHTCEEECC-------------------CCEEEEEEES--CH----HHHHHHHHHHHHT
T ss_pred HHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccc----------cCCceEEEEEe--CH----HHHHHHHHHHHhh
Confidence 45667999999 5669999999999998665532110 01122566665 43 3788999999998
Q ss_pred c
Q 030537 120 L 120 (175)
Q Consensus 120 L 120 (175)
|
T Consensus 259 L 259 (376)
T 3n89_A 259 L 259 (376)
T ss_dssp S
T ss_pred C
Confidence 8
No 49
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=82.53 E-value=3 Score=34.01 Aligned_cols=69 Identities=20% Similarity=0.224 Sum_probs=50.6
Q ss_pred ceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhHHHHHHHHHHHHHhccC
Q 030537 42 NFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLK 121 (175)
Q Consensus 42 NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~~~~l~~A~e~Ie~lL~ 121 (175)
+++.|++||+|+-+..|.+.++|+|.|=-.| .|+|.+.++... ..+..|+..|+.---
T Consensus 157 ~~~~rl~~~~~~~l~~l~~~~~~~i~vG~NG--------------------~IWi~~~~~~~~--~~~~~ai~~~e~~~~ 214 (235)
T 2z0s_A 157 AKVPRVIGRKMSMLKTLEEKTECKIFVARNG--------------------RIHLECPNEDLE--AIAVMAIKIIDEEAY 214 (235)
T ss_dssp GGSGGGTCGGGHHHHHHHHHHCCEEEEETTT--------------------EEEEECSCHHHH--HHHHHHHHHHHHCSC
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEEeCCC--------------------EEEEecCCHHHH--HHHHHHHHHHHhhhh
Confidence 6788999999999999998999999984322 789998876543 367778888876544
Q ss_pred CCCcchHHHHHH
Q 030537 122 PVDESLDHYKKQ 133 (175)
Q Consensus 122 p~~e~~de~K~~ 133 (175)
+.+-.|.+|+.
T Consensus 215 -~~~l~~~v~~~ 225 (235)
T 2z0s_A 215 -TSGLTKRIIKF 225 (235)
T ss_dssp -CTTCHHHHHHH
T ss_pred -hhhHHHHHHHH
Confidence 34445555543
No 50
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=70.90 E-value=0.73 Score=35.62 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=26.6
Q ss_pred ceeEEEeCCCCchHHHHHhhhCceEEEec
Q 030537 42 NFVGRILGPRGNSLKRVEAMTECTVFIRG 70 (175)
Q Consensus 42 NfvGrIiGPrG~TlK~ie~eTgckI~IRG 70 (175)
+-+|..+|++|+.++.|+++.|-||-|-.
T Consensus 45 g~vGa~IG~~G~ri~~i~~elgekIdIV~ 73 (144)
T 2cxc_A 45 GEAGRAIGRGGRLIKLLREALGKNIEVVE 73 (144)
T ss_dssp TCHHHHHCGGGHHHHHHHHHHSSEEEEEE
T ss_pred CCccccCccCchHHHHHHHHhCCeeEEEE
Confidence 45899999999999999999999998875
No 51
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=64.17 E-value=7.4 Score=31.63 Aligned_cols=73 Identities=12% Similarity=0.203 Sum_probs=47.9
Q ss_pred ceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhHHHHHHHHHHHHHhccC
Q 030537 42 NFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLLK 121 (175)
Q Consensus 42 NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~~~~l~~A~e~Ie~lL~ 121 (175)
+.+.|++||+++-++.|.+.++|.|.|==.| .|+|.+.+. -...+..|+..++.--.
T Consensus 145 ~~v~rl~~~~~~~l~~l~~~~~~ei~vG~NG--------------------~IWi~~~~~---~~~~~~~ai~~~e~~~~ 201 (229)
T 2ba0_A 145 ARVPRVIGKKGSMIKLLKSELDVQIVVGQNG--------------------LIWVNGDRR---KVSIAEEAIYLIEQEAH 201 (229)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHTCEEEECTTS--------------------EEEEESCHH---HHHHHHHHHHHHHHCSC
T ss_pred HHhHHHhcCCchHHHHhcccCCeEEEEECCc--------------------EEEEeCCch---hHHHHHHHHHHHHhhhh
Confidence 5566899999999999999999999983222 789985443 12366777877765433
Q ss_pred CCCcchHHHHHHHHHHHH
Q 030537 122 PVDESLDHYKKQQLREFA 139 (175)
Q Consensus 122 p~~e~~de~K~~QL~eLA 139 (175)
..+-.|.+|+ -|++.-
T Consensus 202 -~~~l~~~v~~-~l~~~~ 217 (229)
T 2ba0_A 202 -TEGLTDRVAE-FIKRRK 217 (229)
T ss_dssp -CSSHHHHHHH-HHHHHH
T ss_pred -hhhHHHHHHH-HHHHhc
Confidence 2233344443 355543
No 52
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=57.26 E-value=0.79 Score=38.11 Aligned_cols=56 Identities=16% Similarity=0.264 Sum_probs=34.4
Q ss_pred ceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhHHHHHHHHHHHHHhc
Q 030537 42 NFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENL 119 (175)
Q Consensus 42 NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~~~~l~~A~e~Ie~l 119 (175)
+++.|+|||++.-+..|.+.++|.|.|==.| .|+|.+.++... ..+..|+..++.-
T Consensus 164 ~~v~rl~~~~~~~l~~l~~~~~~ei~vG~NG--------------------~IWi~~~~~~~~--~~~~~aI~~~e~~ 219 (251)
T 2je6_I 164 VKVPRVIGKNKSMYETLTSKSGCSIFVANNG--------------------RIWATCPSRFSE--EILIEAIRKIENE 219 (251)
T ss_dssp GGHHHHHCGGGHHHHHHHTTC---CEECTTS--------------------EEEC-----CTT--CCTHHHHTTTTTT
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEEECCc--------------------EEEEeCCCHHHH--HHHHHHHHHHHhh
Confidence 5677899999999999999999999984222 788988776432 1456666666544
No 53
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=52.15 E-value=3.3 Score=34.80 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=33.6
Q ss_pred EEEEccCCCCCCCcceeEEEeCCCCchHHHH-HhhhCceEEEec
Q 030537 28 IRLDVPVDKYPNQFNFVGRILGPRGNSLKRV-EAMTECTVFIRG 70 (175)
Q Consensus 28 ~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~i-e~eTgckI~IRG 70 (175)
.||-|=. .-|+ ++-+|..||++|+.++.| ++..|=+|-|--
T Consensus 114 ~KiAV~s-~d~~-iDpvGacIG~~G~rI~~i~~eL~gekIDIi~ 155 (251)
T 2asb_A 114 SKIAVRS-NVAG-LNAKGACIGPMGQRVRNVMSELSGEKIDIID 155 (251)
T ss_dssp EEEEEEE-SSTT-CCHHHHHHCGGGHHHHHHHHHTTTCEEEEEE
T ss_pred eEEEEEc-CCCC-CCHHHHHhCCCchHHHHHHHHhCCCeEEEEE
Confidence 3555533 3477 999999999999999999 888899999884
No 54
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=49.97 E-value=48 Score=28.20 Aligned_cols=62 Identities=10% Similarity=0.161 Sum_probs=38.6
Q ss_pred eEEEeCCCCc-----hHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhHHHHHHHHHHHHH
Q 030537 44 VGRILGPRGN-----SLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILE 117 (175)
Q Consensus 44 vGrIiGPrG~-----TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~~~~l~~A~e~Ie 117 (175)
+-.|||.... .+.++-+.-|+++.+.||...+.+.|- =||.+.+++.+ .+..++..+.+.++
T Consensus 333 m~nilg~~~~~~~~~~~~~~~~~p~~~~~~ygk~~~~~~rkm-----------Ghv~~~~~~~~-~~~~~a~~~~~~~~ 399 (403)
T 3k5i_A 333 MLNIIGGAAPDTHLQAAECALSIPNASIHLYSKGAAKPGRKM-----------GHITVTAPTMH-EAETHIQPLIDVVD 399 (403)
T ss_dssp EEEEECCSSSSHHHHHHHHHTTSTTEEEEECCCCSCCTTCEE-----------EEEEEECSSHH-HHHHHHHHHHHHHH
T ss_pred EEEEecCCccccchhHHHHHhcCCCCEEEECCCCCCCCCCee-----------EEEEEEcCCHH-HHHHHHHHHHhhhh
Confidence 3446665543 234455567999999998766554321 29999988754 34455556655554
No 55
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=49.63 E-value=3.7 Score=34.96 Aligned_cols=54 Identities=11% Similarity=0.186 Sum_probs=40.4
Q ss_pred ceeEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhHHHHHHHHHHHHH
Q 030537 42 NFVGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILE 117 (175)
Q Consensus 42 NfvGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~~~~l~~A~e~Ie 117 (175)
+++-|++||++.-++.|.+.++|.|.|==.| .|+|.+.++... ..+..|+..++
T Consensus 219 ~lvrrl~~~~~~~l~~L~~~~~~eI~vG~NG--------------------~IWI~~~~~~~~--~~i~~aI~~~e 272 (289)
T 2nn6_G 219 GLIRKLLAPDCEIIQEVGKLYPLEIVFGMNG--------------------RIWVKAKTIQQT--LILANILEACE 272 (289)
T ss_dssp HHHHHHHCTTCSHHHHTTCSSSCCCEEETTT--------------------EEEECCSSHHHH--HHHHHHHHHTT
T ss_pred HHhhhhhcCchhHHHHhcccCCeEEEEECCc--------------------EEEEecCChhHH--HHHHHHHHHhh
Confidence 5666779999999999999999999875333 789988776432 35666666663
No 56
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=48.05 E-value=25 Score=25.57 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=31.4
Q ss_pred hhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchh--hHHHHHHHHHHHHHhccCC
Q 030537 61 MTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPED--IINSRLDHAVAILENLLKP 122 (175)
Q Consensus 61 eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~--~~~~~l~~A~e~Ie~lL~p 122 (175)
..|.++.|+|+|--.... + ...+|+|.+...-|.. .- ....+++++++..
T Consensus 47 ~~G~~~rl~G~Gmp~~~~----~----~~GDL~V~~~V~~P~~~~ls----~~q~~~l~~l~~~ 98 (121)
T 1xao_A 47 APGMRKVIEGKGMPIPKY----G----GYGNLIIKFTIKFPENHFTS----EENLKKLEEILPP 98 (121)
T ss_dssp CTTCEEEETTCSCC--------------CCCEEEEEEEECCCTTCSC----HHHHHHHHHHSCC
T ss_pred CCCcEEEECCCCCCCCCC----C----CCCCEEEEEEEECCCCCCCC----HHHHHHHHHHccc
Confidence 568999999999422110 0 3578999999888753 11 3446667777753
No 57
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=45.85 E-value=4.9 Score=35.45 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=34.1
Q ss_pred EEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhh-CceEEEec
Q 030537 28 IRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMT-ECTVFIRG 70 (175)
Q Consensus 28 ~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eT-gckI~IRG 70 (175)
.||-|= ..-|+ ++-+|..||++|+.++.|.++. |=||-|--
T Consensus 237 aKIAV~-s~d~~-iDpvGacIG~~G~rI~~i~~eL~gekIDIi~ 278 (366)
T 1k0r_A 237 SKIAVR-SNVAG-LNAKGACIGPMGQRVRNVMSELSGEKIDIID 278 (366)
T ss_dssp EEEEEE-ESSTT-CCHHHHHHCGGGHHHHHHHHHTTTCEEEEEE
T ss_pred EEEEEE-eCCCC-CCCcccccCCcchHHHHHHHHhCCCeEEEEE
Confidence 355553 33577 9999999999999999999999 99999885
No 58
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=44.50 E-value=8.7 Score=25.90 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=9.4
Q ss_pred EEEEccCCCCCCCcceeEEEeCCCCch
Q 030537 28 IRLDVPVDKYPNQFNFVGRILGPRGNS 54 (175)
Q Consensus 28 ~Ki~IPv~~yP~~~NfvGrIiGPrG~T 54 (175)
.+||||+++ .+.+.|.+|+.+.+
T Consensus 43 ~~l~VPv~~----~~~i~ry~g~~~~~ 65 (71)
T 3mlq_E 43 GKLYLPVEQ----LPLLKRHPGTTDDP 65 (71)
T ss_dssp EEEEEESSS----CC------------
T ss_pred CEEEEEhhh----hcceeeecCCCCCC
Confidence 489999998 67899999987754
No 59
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=42.50 E-value=2.9 Score=32.48 Aligned_cols=57 Identities=7% Similarity=0.028 Sum_probs=36.7
Q ss_pred eEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhHHHHH-HHHHHHHHhcc
Q 030537 44 VGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDIINSRL-DHAVAILENLL 120 (175)
Q Consensus 44 vGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~~~~l-~~A~e~Ie~lL 120 (175)
.|+|||-+|.|++.||-.+.--+.=. .. +.|.+.+.++-..-++.| ..|..+.++..
T Consensus 44 ~glLIGK~G~TL~ALQyL~~~~vn~~------------------~~--~~V~LDve~YRerReetL~~lA~~~A~kV~ 101 (152)
T 2pt7_G 44 SALLIGEKGYRYKALSYLLFNWIHPT------------------YG--YSIRLEISTFLQNQEKVMDTQLQSVIMTVH 101 (152)
T ss_dssp GTTTTCGGGHHHHHHHHHHHHHHHHH------------------HS--CEEEEEETTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEECCCCcchHHHHHHHHHHhhhc------------------CC--ceEEEEhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999884221100 11 789999888854333333 34555555544
No 60
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=32.91 E-value=15 Score=31.98 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=32.5
Q ss_pred EEEEccCCCCCCCcceeEEEeCCCCchHHHHHhhh-CceEEEec
Q 030537 28 IRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMT-ECTVFIRG 70 (175)
Q Consensus 28 ~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~ie~eT-gckI~IRG 70 (175)
.||-|-- .-|+ ++-+|..+|++|+.++.+.++. |=+|-|=-
T Consensus 233 ~KiAV~s-~d~~-iDpvGacvg~~G~ri~~i~~el~ge~Idii~ 274 (344)
T 1hh2_P 233 TKVAVAS-NDPN-VDPIGACIGEGGSRIAAILKELKGEKLDVLK 274 (344)
T ss_dssp EEEEEEE-SSTT-SCHHHHHHCTTSTTHHHHHHHTTTCEEEEEE
T ss_pred cceeEEc-cCCC-ccccceeeccCCcEeHHHHHHhCCCeeeEEe
Confidence 3555532 3567 9999999999999999999998 77877653
No 61
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=32.73 E-value=5.7 Score=32.72 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=37.4
Q ss_pred eEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhHHHH-HHHHHHHHHhcc
Q 030537 44 VGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDIINSR-LDHAVAILENLL 120 (175)
Q Consensus 44 vGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~~~~-l~~A~e~Ie~lL 120 (175)
.|+|||.+|.||+.||-.+.--+.-. ..+.++|.+.+.++...-++. ...|...++++.
T Consensus 103 ~g~LIGk~G~tLdALQyL~~~~vn~~------------------~~~~~rv~LDi~~YR~rR~e~L~~lA~~~A~kV~ 162 (225)
T 3gku_A 103 MGILIGKRGQTLDSLQYLVSLVVNKS------------------SSDYIRVKLDTENYRERRKETLETLAKNIAYKVK 162 (225)
T ss_dssp HHHCSTTHHHHHHHHHHHHHHHHHHT------------------CSSCCEEEEESTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeecCCCeEhHHHHHHHHHHHHhc------------------CCCceEEEEecchHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999998333221 234568888888874432222 233444444443
No 62
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=32.71 E-value=1.3e+02 Score=21.29 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=31.6
Q ss_pred chHHHHHhhh-CceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhHHHHHHHHHHHHHhcc
Q 030537 53 NSLKRVEAMT-ECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLL 120 (175)
Q Consensus 53 ~TlK~ie~eT-gckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~~~~l~~A~e~Ie~lL 120 (175)
.++..|+-.. +..|.||--|+ ..-++|++++.+.+ .++..++...+.|+.++
T Consensus 45 ~~idgl~~~~~~gwvlvRpSGT---------------EP~irvy~Ea~~~~-~~~~~~~~~~~~i~~~~ 97 (112)
T 1wjw_A 45 EAINDLVKKYTLARAFVRPSGT---------------EDIVRVYAEANSQE-SADRLAYEVSLLVFQLA 97 (112)
T ss_dssp HHHHHHHHHSSSEEEEEECSSS---------------SSSEEEEEEESSHH-HHHHHHHHHHHHHHHHT
T ss_pred hhhhcEEEEcCCcEEEEEeCCC---------------ccEEEEEEEECCHH-HHHHHHHHHHHHHHHHH
Confidence 3555555553 56899997552 34678999998753 44445555555555544
No 63
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=31.16 E-value=31 Score=26.98 Aligned_cols=58 Identities=17% Similarity=0.072 Sum_probs=39.0
Q ss_pred ceeEEEeCCCCc-hHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhHHHHHHHHHHH-HHhc
Q 030537 42 NFVGRILGPRGN-SLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAI-LENL 119 (175)
Q Consensus 42 NfvGrIiGPrG~-TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~~~~l~~A~e~-Ie~l 119 (175)
+++-|++|-+|+ .++.|.+.++|.|.|==.| .|+|.+.++.+. ..+..|+.. ++.
T Consensus 100 ~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG--------------------~IWi~~~~~~~~--~~v~~aI~~~~~~- 156 (175)
T 2ja9_A 100 NFARQLLFNNDFPLLKVLAAHTKFEVAIGLNG--------------------KIWVKCEELSNT--LACYRTIMECCQK- 156 (175)
T ss_dssp HHHHHHHHCTTCCHHHHHHTTCCCEEEEETTT--------------------EEEEECSSHHHH--HHHHHHHHHHHHH-
T ss_pred HHhhHHhcCCCcchHHhhhccCCeEEEEECCc--------------------EEEEecCCHHHH--HHHHHHHHHHhcc-
Confidence 455566674455 8999999999999875333 789998876432 245567776 543
Q ss_pred cCC
Q 030537 120 LKP 122 (175)
Q Consensus 120 L~p 122 (175)
+.+
T Consensus 157 ~~~ 159 (175)
T 2ja9_A 157 NDT 159 (175)
T ss_dssp CCG
T ss_pred CCH
Confidence 443
No 64
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=29.55 E-value=1e+02 Score=26.48 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=33.4
Q ss_pred hHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhHHHHHHHHHHHH
Q 030537 54 SLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAIL 116 (175)
Q Consensus 54 TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~~~~l~~A~e~I 116 (175)
.+.++-+.-|+++.+.||...+.+.| -| ||.+.+++.+ .+..++..|.+.|
T Consensus 364 ~~~~~l~~p~~~~~~ygk~~~~~~rk---mG--------hv~~~~~~~~-~~~~~a~~~~~~l 414 (419)
T 4e4t_A 364 PWDTVAAMPAAHLHLYGKEEARVGRK---MG--------HVNFTAEMRD-DAVAAATACAQLL 414 (419)
T ss_dssp CHHHHHTSTTEEEEECCCSCCCTTCE---EE--------EEEEECSSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEECCCCCCCCCCc---eE--------EEEEEeCCHH-HHHHHHHHHHHhc
Confidence 35666677899999999876554432 12 9999988754 3444555555544
No 65
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=28.85 E-value=24 Score=27.41 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=17.2
Q ss_pred hHHHHHhhhCceEEEeccC
Q 030537 54 SLKRVEAMTECTVFIRGQS 72 (175)
Q Consensus 54 TlK~ie~eTgckI~IRGkG 72 (175)
.+++||++.|+++..|++|
T Consensus 40 ~i~~LE~~lg~~Lf~R~~~ 58 (303)
T 3isp_A 40 RIKSLEQQVGQVLVVREKP 58 (303)
T ss_dssp HHHHHHHHHTSCCEECSSS
T ss_pred HHHHHHHHhCCeeEEcCCC
Confidence 5899999999999999864
No 66
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=28.44 E-value=16 Score=29.96 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=31.4
Q ss_pred CceeEEEEEEccCCCCCCCcceeEEEeCCCCchHHHH--------HhhhCceEEEe
Q 030537 22 PVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRV--------EAMTECTVFIR 69 (175)
Q Consensus 22 ~~~k~~~Ki~IPv~~yP~~~NfvGrIiGPrG~TlK~i--------e~eTgckI~IR 69 (175)
..+++...|++.-+ +-.|-|||-+|..+|+| |+..||+|.+.
T Consensus 236 ~~~~i~a~i~ve~~------~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 236 NMLVIKGEIIVDRE------NLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp TSEEEEEEEEESSG------GGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred CeEEEEEEEEEccC------CcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 35566677777643 44578999999999976 66789998876
No 67
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=28.36 E-value=58 Score=25.11 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=30.4
Q ss_pred hhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhHHHHHHHHHHHHHhcc
Q 030537 61 MTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLL 120 (175)
Q Consensus 61 eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~~~~l~~A~e~Ie~lL 120 (175)
.+|..+.|+|+|--... ......+|+|.+...-|.+.- +...++++++|
T Consensus 131 ~~g~~~rl~g~Gmp~~~-------~~~~~GDL~V~~~V~~P~~ls----~~q~~~l~~~~ 179 (181)
T 3agx_A 131 RPGMRRKVPGEGLPLPK-------TPEKRGDLIIEFEVIFPERIP----QTSRTVLEQVL 179 (181)
T ss_dssp CTTCEEEETTCSCBCSS-------STTSBCCEEEEEEEECCSCCC----HHHHHHHHHHS
T ss_pred CCCcEEEECCcCCCcCC-------CCCCcCCEEEEEEEECCCCCC----HHHHHHHHHhc
Confidence 56888999998842110 011347899999988875311 24456666666
No 68
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=27.42 E-value=89 Score=26.43 Aligned_cols=45 Identities=9% Similarity=0.018 Sum_probs=30.7
Q ss_pred eEEEeCCCCchHHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCch
Q 030537 44 VGRILGPRGNSLKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPE 102 (175)
Q Consensus 44 vGrIiGPrG~TlK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~ 102 (175)
+-.|||.. ...++-+.-++++.+.|| ..+.+.| -| ||.+.+++.+
T Consensus 282 m~nilg~~--~~~~~~~~p~~~~~~ygk-~~r~~rk---mG--------hv~~~~~~~~ 326 (355)
T 3eth_A 282 MINLIGSD--VNYDWLKLPLVHLHWYDK-EVRPGRK---VG--------HLNLTDSDTS 326 (355)
T ss_dssp EEEEESCC--CCGGGGGSTTCEEEECCC-CCCTTCE---EE--------EEEEECSCHH
T ss_pred EEEEecch--HHHHHHhCCCCEEEEcCC-CCCCCCe---eE--------EEEEEcCCHH
Confidence 34456654 345666678999999999 6665443 22 9999988753
No 69
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=26.86 E-value=91 Score=22.07 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=23.9
Q ss_pred hhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCch
Q 030537 61 MTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPE 102 (175)
Q Consensus 61 eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~ 102 (175)
..|.++.|+|+|--.. ....+|+|.|...-|.
T Consensus 49 ~~G~~~rl~G~G~p~~----------~~~GDL~v~~~V~~P~ 80 (109)
T 3i38_A 49 QAGQRLRIKGKGLVSK----------THTGDLFAVIKIVMPT 80 (109)
T ss_dssp CTTCEEEETTCSCBCS----------SCBCCEEEEEEECCCS
T ss_pred CcCeEEEECCccCCCC----------CCCcCEEEEEEEECCC
Confidence 5689999999995321 1357899999888775
No 70
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=26.19 E-value=64 Score=19.39 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=17.9
Q ss_pred ccCCCCCCCCCCCCC--CCcccCccccc
Q 030537 144 TLREESPSMSPSMSP--SMWPFNSAGMK 169 (175)
Q Consensus 144 t~r~~~~~~~g~~~~--~~~p~~~~~~~ 169 (175)
-...+.+++||..+| +.+|....+-+
T Consensus 7 ~~~~~~C~~Cgk~GH~ardCP~~~~~~r 34 (40)
T 1a6b_B 7 QLDRDQCAYCKEKGHWAKDCPKKPRGPR 34 (40)
T ss_dssp SCCSSSCSSSCCTTCCTTSCSSSCCCTT
T ss_pred CCCCCeeeECCCCCcchhhCcCCcccCC
Confidence 345667799999999 66666544433
No 71
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=24.42 E-value=43 Score=27.34 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=37.6
Q ss_pred cc-eeEEEeCCCCc-------h-----HHHHHhhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCc-hhhHH
Q 030537 41 FN-FVGRILGPRGN-------S-----LKRVEAMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFP-EDIIN 106 (175)
Q Consensus 41 ~N-fvGrIiGPrG~-------T-----lK~ie~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~-~~~~~ 106 (175)
+. .+|+||||||. | .+.+++.-..+|..|-+ -..-+|+-|--.+. .+...
T Consensus 124 vg~~LG~iLGPrGlMPnpk~GTvt~dv~~~v~~~K~g~v~~r~d----------------k~g~i~~~IGk~~f~~e~L~ 187 (229)
T 3u42_A 124 VGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRND----------------KTGAIHAPVGKASFPPEKLA 187 (229)
T ss_dssp HHHHHHHHHHHHTCCCCGGGTCBSSCHHHHHHHHHTTEEEEECC----------------TTSEEEEEEEETTSCHHHHH
T ss_pred HHHhhccccccccccccCCCCCCCCCHHHHHHHHhCceEEEEeC----------------CCCeecccccCCCCCHHHHH
Confidence 44 68999999986 2 24444443347888732 13357888876553 33344
Q ss_pred HHHHHHHHHHHhcc
Q 030537 107 SRLDHAVAILENLL 120 (175)
Q Consensus 107 ~~l~~A~e~Ie~lL 120 (175)
+-+...++.|...+
T Consensus 188 eNi~a~i~~i~~~k 201 (229)
T 3u42_A 188 DNIRAFIRALEAHK 201 (229)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC
Confidence 45566666665544
No 72
>2kie_A Inositol polyphosphate 5-phosphatase OCRL-1; INPP5B, clathrin, endocytosis, alternative splicing, cataract, disease mutation, hydrolase; NMR {Homo sapiens}
Probab=23.83 E-value=27 Score=26.19 Aligned_cols=17 Identities=18% Similarity=0.548 Sum_probs=13.2
Q ss_pred HHHHHhhhCceEEEecc
Q 030537 55 LKRVEAMTECTVFIRGQ 71 (175)
Q Consensus 55 lK~ie~eTgckI~IRGk 71 (175)
+=.|-..|||||.|+|.
T Consensus 78 LIDIasntgcKIRvqgd 94 (124)
T 2kie_A 78 LIDIASNSGCKIRVQGD 94 (124)
T ss_dssp SCCGGGCSSEEEEEESS
T ss_pred EEeccCCCCcEEEEecc
Confidence 33456678999999995
No 73
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=23.41 E-value=99 Score=23.78 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=16.7
Q ss_pred hHHHHHhhhCceEEEeccC
Q 030537 54 SLKRVEAMTECTVFIRGQS 72 (175)
Q Consensus 54 TlK~ie~eTgckI~IRGkG 72 (175)
.+|+||++.|+++.+|...
T Consensus 44 ~I~~LE~~lg~~Lf~R~~~ 62 (310)
T 2esn_A 44 ALGRLRQGLDDELFLRQGN 62 (310)
T ss_dssp HHHHHHHHHTSCCEEEETT
T ss_pred HHHHHHHhhCCcceeecCC
Confidence 5799999999999999643
No 74
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=22.68 E-value=85 Score=24.05 Aligned_cols=50 Identities=8% Similarity=0.100 Sum_probs=30.0
Q ss_pred hhhCceEEEeccCCCCCccccCCCCCCCCCCCcEEEEEeeCchhhHHHHHHHHHHHHHhcc
Q 030537 60 AMTECTVFIRGQSSVKDSLKEGKIRYEHLNEPLHVLGEAEFPEDIINSRLDHAVAILENLL 120 (175)
Q Consensus 60 ~eTgckI~IRGkGS~k~~~~e~~p~~e~~~epLHV~Isa~~~~~~~~~~l~~A~e~Ie~lL 120 (175)
...|.++.|+|+|--... .+ ....+|+|.+...-|.+.- +...++++++|
T Consensus 130 t~~g~~~rl~g~Gmp~~~----~~---~~~GDL~V~~~V~~P~~Ls----~~q~~~l~~~~ 179 (180)
T 2q2g_A 130 VNPKTRKIVPNEGMPIKN----QP---GQKGDLILEFDICFPKSLT----PEQKKLIKEAL 179 (180)
T ss_dssp CCTTCEEEETTCSCBCSS----ST---TCBCCEEEEEEEECCSCCC----HHHHHHHHHHC
T ss_pred cCCCEEEEECCcCCCcCC----CC---CCcCCEEEEEEEECCCCCC----HHHHHHHHHhc
Confidence 356889999999842110 01 1347999999988875311 23345555554
No 75
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=21.31 E-value=24 Score=27.23 Aligned_cols=16 Identities=31% Similarity=0.493 Sum_probs=12.2
Q ss_pred hHHHHHhhhCceEEEe
Q 030537 54 SLKRVEAMTECTVFIR 69 (175)
Q Consensus 54 TlK~ie~eTgckI~IR 69 (175)
.+++||++.|+++..|
T Consensus 38 ~i~~LE~~lg~~Lf~R 53 (306)
T 3fzv_A 38 AVKGLEESFGVQLFIR 53 (306)
T ss_dssp HHHHHHHHC-CCCC--
T ss_pred HHHHHHHHhCCeeEee
Confidence 5899999999999999
No 76
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=20.39 E-value=44 Score=25.22 Aligned_cols=19 Identities=11% Similarity=0.160 Sum_probs=16.8
Q ss_pred hHHHHHhhhCceEEEeccC
Q 030537 54 SLKRVEAMTECTVFIRGQS 72 (175)
Q Consensus 54 TlK~ie~eTgckI~IRGkG 72 (175)
.+|+||++.|+++..|...
T Consensus 35 ~i~~LE~~lg~~Lf~R~~~ 53 (291)
T 3szp_A 35 RIQALEDSLNLRLLNRHAR 53 (291)
T ss_dssp HHHHHHHHHTCCCEEEETT
T ss_pred HHHHHHHHhCCceEeecCC
Confidence 5899999999999999644
Done!