Your job contains 1 sequence.
>030538
MTLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFT
CLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVAC
TIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030538
(175 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|SPO_1244 - symbol:SPO_1244 "translation elongati... 318 1.5e-28 1
TIGR_CMR|APH_0547 - symbol:APH_0547 "translation elongati... 312 6.4e-28 1
TIGR_CMR|NSE_0196 - symbol:NSE_0196 "translation elongati... 285 4.6e-25 1
TIGR_CMR|ECH_0777 - symbol:ECH_0777 "translation elongati... 276 4.2e-24 1
TIGR_CMR|BA_4421 - symbol:BA_4421 "translation elongation... 233 1.5e-19 1
TIGR_CMR|CHY_1872 - symbol:CHY_1872 "translation elongati... 228 5.1e-19 1
TIGR_CMR|GSU_0465 - symbol:GSU_0465 "translation elongati... 207 8.6e-17 1
UNIPROTKB|P0A6N4 - symbol:efp "protein chain elongation f... 200 4.7e-16 1
TIGR_CMR|CJE_0655 - symbol:CJE_0655 "translation elongati... 193 2.6e-15 1
UNIPROTKB|P64034 - symbol:efp "Elongation factor P" speci... 192 3.3e-15 1
TIGR_CMR|DET_0870 - symbol:DET_0870 "translation elongati... 189 6.9e-15 1
TAIR|locus:2077888 - symbol:AT3G08740 species:3702 "Arabi... 185 1.8e-14 1
TIGR_CMR|DET_0714 - symbol:DET_0714 "translation elongati... 183 3.0e-14 1
TIGR_CMR|GSU_1752 - symbol:GSU_1752 "translation elongati... 183 3.0e-14 1
UNIPROTKB|Q9KNS1 - symbol:efp "Elongation factor P" speci... 181 4.9e-14 1
TIGR_CMR|CBU_1816 - symbol:CBU_1816 "translation elongati... 181 4.9e-14 1
TIGR_CMR|VC_2660 - symbol:VC_2660 "elongation factor P" s... 181 4.9e-14 1
TIGR_CMR|CPS_0972 - symbol:CPS_0972 "translation elongati... 173 3.4e-13 1
UNIPROTKB|P0A6N8 - symbol:yeiP "predicted dehydrogenase, ... 170 7.1e-13 1
UNIPROTKB|Q9KSP7 - symbol:VC_1209 "Elongation factor P-li... 170 7.1e-13 1
TIGR_CMR|VC_1209 - symbol:VC_1209 "elongation factor P fa... 170 7.1e-13 1
TIGR_CMR|CPS_1465 - symbol:CPS_1465 "elongation factor P-... 159 1.0e-11 1
TIGR_CMR|SO_2328 - symbol:SO_2328 "translation elongation... 153 4.5e-11 1
>TIGR_CMR|SPO_1244 [details] [associations]
symbol:SPO_1244 "translation elongation factor P"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003746 "translation
elongation factor activity" evidence=ISS] [GO:0006414
"translational elongation" evidence=ISS] HAMAP:MF_00141
InterPro:IPR001059 InterPro:IPR011768 InterPro:IPR015365
Pfam:PF01132 Pfam:PF09285 SMART:SM00841 UniPathway:UPA00345
GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003746
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0043043 eggNOG:COG0231
KO:K02356 InterPro:IPR020599 InterPro:IPR013185 InterPro:IPR013852
InterPro:IPR008991 Pfam:PF08207 PIRSF:PIRSF005901 SUPFAM:SSF50104
TIGRFAMs:TIGR00038 PROSITE:PS01275 ProtClustDB:PRK00529
HOGENOM:HOG000010048 RefSeq:YP_166490.1 ProteinModelPortal:Q5LU15
GeneID:3193034 KEGG:sil:SPO1244 PATRIC:23375789 OMA:EEGMTDV
Uniprot:Q5LU15
Length = 187
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 61/169 (36%), Positives = 103/169 (60%)
Query: 6 GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
G ++ + +H + G+GGA Q+ELR++ G+K++ RF + + VERV +E K LY
Sbjct: 19 GGLWAAVKVDHVKPGKGGAFAQVELRNLRNGSKLNERFRSADKVERVRLEQKDQQFLYES 78
Query: 66 NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
+ +++ET+EQ+E+P D+ G+ +LQ+GM + ++ Y+ AL+ ++P++V C I E
Sbjct: 79 DGMLVFMDAETYEQIELPADLLGERRPFLQDGMTILVEFYESEALNATLPQKVTCKIVET 138
Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
KG T ++ A+LDNGV VMVP ++ E I +N + Y RA
Sbjct: 139 EPVVKGQTAANSFKPAVLDNGVKVMVPPFVGQDEMIVVNTETMEYSERA 187
>TIGR_CMR|APH_0547 [details] [associations]
symbol:APH_0547 "translation elongation factor P"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003746
"translation elongation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006414 "translational elongation"
evidence=ISS] HAMAP:MF_00141 InterPro:IPR001059 InterPro:IPR011768
InterPro:IPR015365 Pfam:PF01132 Pfam:PF09285 SMART:SM00841
UniPathway:UPA00345 GO:GO:0005737 GO:GO:0003746 EMBL:CP000235
GenomeReviews:CP000235_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0043043
eggNOG:COG0231 KO:K02356 InterPro:IPR020599 InterPro:IPR013185
InterPro:IPR013852 InterPro:IPR008991 Pfam:PF08207
PIRSF:PIRSF005901 SUPFAM:SSF50104 TIGRFAMs:TIGR00038
PROSITE:PS01275 ProtClustDB:PRK00529 RefSeq:YP_505139.1
STRING:Q2GKG2 GeneID:3931310 KEGG:aph:APH_0547 PATRIC:20949754
HOGENOM:HOG000010048 OMA:NDIRPGQ BioCyc:APHA212042:GHPM-571-MONOMER
Uniprot:Q2GKG2
Length = 188
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 59/170 (34%), Positives = 100/170 (58%)
Query: 6 GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
G +Y V+ H Q G+GGA +Q EL+++ TG K RF + V R +E+ SF ++ +
Sbjct: 18 GALYLVVKTMHTQPGKGGAYIQAELKNLKTGAKYQERFRADGYVNRAIIEEVSFQYIFGD 77
Query: 66 NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
+ + ++ +E +EQ+ +P+++ G YLQE M + L + G+ +S +P V + E
Sbjct: 78 SSSLTLMNTENYEQISIPVELLGDKSVYLQENMILTLLFHKGQVISAKVPDYVVLEVVEA 137
Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
+ KG T + Y+ A+L+NG V VP ++++GE+I I DD+Y RAK
Sbjct: 138 ESVIKGQTASSSYKSAVLENGRRVSVPPFIKVGEKIVIYTPDDTYYERAK 187
>TIGR_CMR|NSE_0196 [details] [associations]
symbol:NSE_0196 "translation elongation factor P"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003746
"translation elongation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006414 "translational elongation"
evidence=ISS] InterPro:IPR001059 InterPro:IPR011768
InterPro:IPR015365 Pfam:PF01132 Pfam:PF09285 SMART:SM00841
UniPathway:UPA00345 GO:GO:0005737 GO:GO:0003746 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CP000237
GenomeReviews:CP000237_GR Gene3D:2.30.30.30 InterPro:IPR014722
GO:GO:0043043 eggNOG:COG0231 KO:K02356 InterPro:IPR020599
InterPro:IPR013185 InterPro:IPR008991 Pfam:PF08207
PIRSF:PIRSF005901 SUPFAM:SSF50104 TIGRFAMs:TIGR00038
ProtClustDB:PRK00529 HOGENOM:HOG000010048 RefSeq:YP_506091.1
ProteinModelPortal:Q2GEK5 STRING:Q2GEK5 GeneID:3932195
KEGG:nse:NSE_0196 PATRIC:22680491 OMA:AIELPQR
BioCyc:NSEN222891:GHFU-227-MONOMER Uniprot:Q2GEK5
Length = 191
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 56/169 (33%), Positives = 100/169 (59%)
Query: 8 MYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 67
+YQV+ EH + G+GGA + +E++ ID +KV+ RF ++E V + F+E+ L+ E D
Sbjct: 22 LYQVLKREHVKPGKGGAFVNVEMKSIDGASKVNHRFRSDEVVFKAFLEEDECHYLFKEGD 81
Query: 68 TAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHA 127
++ T+EQ V D+F YL+E + V L + + + + +A T++E
Sbjct: 82 AIVLMSLSTYEQFSVDADLFVDVDKYLKEEVVVKLLRHGDKIVGVKVQDNLAYTVEETEP 141
Query: 128 STKGPTVTPRYRRALLDNGVT-VMVPSYLEIGEEIFINPQDDSYIGRAK 175
KG TVT Y+ A+L+ G+ VMVP ++++G++I + +D +Y+GR +
Sbjct: 142 YIKGQTVTSSYKPAILNGGLLKVMVPPFIKVGDQIVVKTEDGTYVGRTE 190
>TIGR_CMR|ECH_0777 [details] [associations]
symbol:ECH_0777 "translation elongation factor P"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003746
"translation elongation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006414 "translational elongation"
evidence=ISS] HAMAP:MF_00141 InterPro:IPR001059 InterPro:IPR011768
InterPro:IPR015365 Pfam:PF01132 Pfam:PF09285 SMART:SM00841
UniPathway:UPA00345 GO:GO:0005737 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003746 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:2.30.30.30
InterPro:IPR014722 GO:GO:0043043 eggNOG:COG0231 KO:K02356
InterPro:IPR020599 InterPro:IPR013185 InterPro:IPR008991
Pfam:PF08207 PIRSF:PIRSF005901 SUPFAM:SSF50104 TIGRFAMs:TIGR00038
PROSITE:PS01275 ProtClustDB:PRK00529 OMA:FMDNEDY
HOGENOM:HOG000010048 RefSeq:YP_507575.1 ProteinModelPortal:Q2GG58
STRING:Q2GG58 GeneID:3927069 KEGG:ech:ECH_0777 PATRIC:20576982
BioCyc:ECHA205920:GJNR-780-MONOMER Uniprot:Q2GG58
Length = 189
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 54/169 (31%), Positives = 94/169 (55%)
Query: 8 MYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 67
+Y V+ H Q G+GGA +Q E++++ TG K RF + ++R V++ + +Y +
Sbjct: 20 LYLVVKVMHTQPGKGGAYIQAEMKNLKTGAKQYERFRADGDIKRAIVDESDYQYIYGDGS 79
Query: 68 TAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHA 127
++ +T+EQL + D+ G YLQ+ + + L Y+G +S +P V + E A
Sbjct: 80 MITIMHLKTYEQLTISKDILGDKSIYLQDNIIITLVFYNGEIISAKVPDYVTLQVVETEA 139
Query: 128 STKGPTVTPR-YRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
KG TV+ Y+ A+L+N + VP++++ G+ I + DDSY RAK
Sbjct: 140 VIKGQTVSSSAYKVAMLENNQRISVPTFIKPGDRIVVYTPDDSYYERAK 188
>TIGR_CMR|BA_4421 [details] [associations]
symbol:BA_4421 "translation elongation factor P"
species:198094 "Bacillus anthracis str. Ames" [GO:0003746
"translation elongation factor activity" evidence=ISS] [GO:0006414
"translational elongation" evidence=ISS] HAMAP:MF_00141
InterPro:IPR001059 InterPro:IPR011768 InterPro:IPR015365
Pfam:PF01132 Pfam:PF09285 SMART:SM00841 UniPathway:UPA00345
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003746 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:2.30.30.30
InterPro:IPR014722 GO:GO:0043043 eggNOG:COG0231 KO:K02356
InterPro:IPR020599 InterPro:IPR013185 InterPro:IPR013852
InterPro:IPR008991 Pfam:PF08207 PIRSF:PIRSF005901 SUPFAM:SSF50104
TIGRFAMs:TIGR00038 PROSITE:PS01275 OMA:DYVFMDM ProtClustDB:PRK00529
HOGENOM:HOG000010049 RefSeq:NP_846649.1 RefSeq:YP_021063.1
RefSeq:YP_030351.1 ProteinModelPortal:Q6KMS8 IntAct:Q6KMS8
DNASU:1087775 EnsemblBacteria:EBBACT00000009430
EnsemblBacteria:EBBACT00000016529 EnsemblBacteria:EBBACT00000019526
GeneID:1087775 GeneID:2818617 GeneID:2852323 KEGG:ban:BA_4421
KEGG:bar:GBAA_4421 KEGG:bat:BAS4101
BioCyc:BANT260799:GJAJ-4158-MONOMER
BioCyc:BANT261594:GJ7F-4301-MONOMER Uniprot:Q6KMS8
Length = 185
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 48/167 (28%), Positives = 87/167 (52%)
Query: 8 MYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 67
++QV+D +H + G+G A ++ +LR++ TG+ F E VE+ +E++ LY +
Sbjct: 19 LWQVLDFQHVKPGKGAAFVRSKLRNLRTGSVQEKTFRAGEKVEKAHIENRRMQYLYASGE 78
Query: 68 TAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHA 127
+++ T+EQ+E+ + +L+E M+V + Y G L +P V + E
Sbjct: 79 AHVFMDNGTYEQIELGEKQIERELKFLKENMEVSIMTYQGEVLGVELPNTVELQVTETEP 138
Query: 128 STKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
KG T + + A L+ G+ V VP ++ GE + IN + Y+ RA
Sbjct: 139 GIKGDTASNVTKPATLETGLVVQVPIFINEGEMLIINTGEGKYVSRA 185
>TIGR_CMR|CHY_1872 [details] [associations]
symbol:CHY_1872 "translation elongation factor P"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003746 "translation elongation factor activity" evidence=ISS]
[GO:0006414 "translational elongation" evidence=ISS] HAMAP:MF_00141
InterPro:IPR001059 InterPro:IPR011768 InterPro:IPR015365
Pfam:PF01132 Pfam:PF09285 SMART:SM00841 UniPathway:UPA00345
GO:GO:0005737 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003746
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0043043 eggNOG:COG0231
HOGENOM:HOG000010047 KO:K02356 InterPro:IPR020599
InterPro:IPR013185 InterPro:IPR013852 InterPro:IPR008991
Pfam:PF08207 PIRSF:PIRSF005901 SUPFAM:SSF50104 TIGRFAMs:TIGR00038
PROSITE:PS01275 OMA:DYVFMDM ProtClustDB:PRK00529 RefSeq:YP_360692.1
ProteinModelPortal:Q3AAZ2 SMR:Q3AAZ2 STRING:Q3AAZ2 GeneID:3728801
KEGG:chy:CHY_1872 PATRIC:21276839
BioCyc:CHYD246194:GJCN-1871-MONOMER Uniprot:Q3AAZ2
Length = 185
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 45/168 (26%), Positives = 88/168 (52%)
Query: 6 GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
G++YQVI+ +H + G+G ++ +LR++ TG + F E V + V+ + LY +
Sbjct: 17 GEVYQVIEFQHVKPGKGSPFVRSKLRNLMTGAVIEKTFNAGEKVPKAHVDRREVQYLYND 76
Query: 66 NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
D + ++ ET++Q + + FG A Y++E +W+ + + + +P V + +
Sbjct: 77 GDNFYCMDMETYDQFPLTKEQFGDAINYVKENTNLWVLFFKDKVIGVELPNFVELKVIDT 136
Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 173
KG T + + A L+ G V VP ++E+G+ + I+ + YI R
Sbjct: 137 PPGIKGDTASGGSKPATLETGYVVQVPFFVEVGDVLQIDTRTGQYIKR 184
>TIGR_CMR|GSU_0465 [details] [associations]
symbol:GSU_0465 "translation elongation factor P"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003746
"translation elongation factor activity" evidence=ISS] [GO:0006414
"translational elongation" evidence=ISS] HAMAP:MF_00141
InterPro:IPR001059 InterPro:IPR011768 InterPro:IPR015365
Pfam:PF01132 Pfam:PF09285 SMART:SM00841 UniPathway:UPA00345
GO:GO:0005737 GO:GO:0003746 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0043043
RefSeq:NP_951524.1 ProteinModelPortal:Q74FY7 GeneID:2686244
KEGG:gsu:GSU0465 PATRIC:22023676 eggNOG:COG0231
HOGENOM:HOG000010047 KO:K02356 OMA:EADFERH ProtClustDB:PRK14578
BioCyc:GSUL243231:GH27-448-MONOMER InterPro:IPR020599
InterPro:IPR013185 InterPro:IPR013852 InterPro:IPR008991
Pfam:PF08207 PIRSF:PIRSF005901 SUPFAM:SSF50104 TIGRFAMs:TIGR00038
PROSITE:PS01275 Uniprot:Q74FY7
Length = 187
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 51/166 (30%), Positives = 84/166 (50%)
Query: 11 VIDAEHKQRGRGGA--MMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDT 68
++D + GA M++ R++ TG + F + + VE E LY + D
Sbjct: 22 ILDVHFQSPSARGASTMVKTRYRNLLTGQVLDKTFRSGDKVEEADFERHKGQYLYADGDR 81
Query: 69 AFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHAS 128
++ ET+EQ E+ + F YL +G +V L L+ R +S P+ V TI +
Sbjct: 82 GVFMDMETYEQFEMDAESFQVIQPYLLDGTEVVLGLFQERLVSVDPPQVVELTITDTPPV 141
Query: 129 TKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
K T T + + A L+ G+T+ VP YLE+GE+I ++ +D +I RA
Sbjct: 142 IKNATATAQTKEATLETGLTLQVPPYLEVGEKIKVDTRDCRFISRA 187
>UNIPROTKB|P0A6N4 [details] [associations]
symbol:efp "protein chain elongation factor EF-P"
species:83333 "Escherichia coli K-12" [GO:0043043 "peptide
biosynthetic process" evidence=IEA] [GO:0043022 "ribosome binding"
evidence=IDA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003746 "translation
elongation factor activity" evidence=IEA;IDA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] HAMAP:MF_00141 InterPro:IPR001059
InterPro:IPR011768 InterPro:IPR015365 Pfam:PF01132 Pfam:PF09285
SMART:SM00841 UniPathway:UPA00345 GO:GO:0005737 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0043022 GO:GO:0003746 EMBL:U14003 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:2.30.30.30
InterPro:IPR014722 GO:GO:0043043 eggNOG:COG0231
HOGENOM:HOG000010047 KO:K02356 InterPro:IPR020599
InterPro:IPR013185 InterPro:IPR013852 InterPro:IPR008991
Pfam:PF08207 PIRSF:PIRSF005901 SUPFAM:SSF50104 TIGRFAMs:TIGR00038
PROSITE:PS01275 ProtClustDB:PRK00529 EMBL:X61676 PIR:S34443
RefSeq:NP_418571.1 RefSeq:YP_492290.1 PDB:3A5Z PDBsum:3A5Z
ProteinModelPortal:P0A6N4 SMR:P0A6N4 DIP:DIP-31834N IntAct:P0A6N4
PaxDb:P0A6N4 PRIDE:P0A6N4 EnsemblBacteria:EBESCT00000001595
EnsemblBacteria:EBESCT00000016420 GeneID:12931782 GeneID:948661
KEGG:ecj:Y75_p4034 KEGG:eco:b4147 PATRIC:32123863 EchoBASE:EB2023
EcoGene:EG12099 OMA:DSAKWLQ BioCyc:EcoCyc:EG12099-MONOMER
BioCyc:ECOL316407:JW4107-MONOMER BioCyc:MetaCyc:EG12099-MONOMER
Genevestigator:P0A6N4 Uniprot:P0A6N4
Length = 188
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 49/170 (28%), Positives = 84/170 (49%)
Query: 6 GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
G+ Y V +E + G+G A +++LR + TG +V F + ++ E V D + T LY +
Sbjct: 19 GEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYND 78
Query: 66 NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
+ + +ETFEQL G +L + + + L++G+ +S + P V I +
Sbjct: 79 GEFWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDT 138
Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
KG T + A L G V VP +++IGE I ++ + Y+ R K
Sbjct: 139 DPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVIKVDTRSGEYVSRVK 188
>TIGR_CMR|CJE_0655 [details] [associations]
symbol:CJE_0655 "translation elongation factor P"
species:195099 "Campylobacter jejuni RM1221" [GO:0003746
"translation elongation factor activity" evidence=ISS] [GO:0006414
"translational elongation" evidence=ISS] HAMAP:MF_00141
InterPro:IPR001059 InterPro:IPR011768 InterPro:IPR015365
Pfam:PF01132 Pfam:PF09285 SMART:SM00841 UniPathway:UPA00345
GO:GO:0005737 GO:GO:0003746 EMBL:CP000025 GenomeReviews:CP000025_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0043043 eggNOG:COG0231
HOGENOM:HOG000010047 KO:K02356 InterPro:IPR020599
InterPro:IPR013185 InterPro:IPR008991 Pfam:PF08207
PIRSF:PIRSF005901 SUPFAM:SSF50104 TIGRFAMs:TIGR00038
PROSITE:PS01275 OMA:DYVFMDM ProtClustDB:PRK00529 RefSeq:YP_178670.1
ProteinModelPortal:Q5HVL5 STRING:Q5HVL5 GeneID:3232022
KEGG:cjr:CJE0655 PATRIC:20043030 BioCyc:CJEJ195099:GJC0-671-MONOMER
Uniprot:Q5HVL5
Length = 189
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 43/169 (25%), Positives = 89/169 (52%)
Query: 6 GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
G +++++ +H + G+G A ++++++ G + F + E +EDK+ LY +
Sbjct: 19 GIPFKIVEYQHVKPGKGPAFVRIKIKSFIDGKVLEKTFHAGDKCEAPNLEDKTMQYLYDD 78
Query: 66 NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
+ ++++T+EQ+ + D G+A ++ +GM V + ++G+A+ +P+ V I E
Sbjct: 79 GENCQFMDTQTYEQVAISDDDVGEAKKWMLDGMMVDVLFHNGKAIGVEVPQVVELKIIET 138
Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
+ KG T + A L+ G V +P ++ GE I ++ YI RA
Sbjct: 139 APNFKGDTQGSNKKPATLETGAVVQIPFHVLEGEVIRVDTVRGEYIERA 187
>UNIPROTKB|P64034 [details] [associations]
symbol:efp "Elongation factor P" species:1773
"Mycobacterium tuberculosis" [GO:0040007 "growth" evidence=IMP]
HAMAP:MF_00141 InterPro:IPR001059 InterPro:IPR011768
InterPro:IPR015365 Pfam:PF01132 Pfam:PF09285 SMART:SM00841
UniPathway:UPA00345 GO:GO:0005737 GO:GO:0040007 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842580
GO:GO:0003746 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0043043 eggNOG:COG0231
HOGENOM:HOG000010047 KO:K02356 InterPro:IPR020599
InterPro:IPR013185 InterPro:IPR013852 InterPro:IPR008991
Pfam:PF08207 PIRSF:PIRSF005901 SUPFAM:SSF50104 TIGRFAMs:TIGR00038
PROSITE:PS01275 OMA:DYVFMDM ProtClustDB:PRK00529 PIR:B70658
RefSeq:NP_217050.1 RefSeq:NP_337105.1 RefSeq:YP_006515975.1
ProteinModelPortal:P64034 SMR:P64034 PRIDE:P64034
EnsemblBacteria:EBMYCT00000003586 EnsemblBacteria:EBMYCT00000071126
GeneID:13319253 GeneID:888437 GeneID:925712 KEGG:mtc:MT2609
KEGG:mtu:Rv2534c KEGG:mtv:RVBD_2534c PATRIC:18127492
TubercuList:Rv2534c Uniprot:P64034
Length = 187
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 41/168 (24%), Positives = 85/168 (50%)
Query: 6 GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
G+++ + + +H + G+G A ++ +L+++ +G V F V+ V+ + T LY +
Sbjct: 17 GQLWTITEFQHVKPGKGPAFVRTKLKNVLSGKVVDKTFNAGVKVDTATVDRRDTTYLYRD 76
Query: 66 NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
++S+ +EQ +P + G A +L EGM V + ++G L +P V +
Sbjct: 77 GSDFVFMDSQDYEQHPLPEALVGDAARFLLEGMPVQVAFHNGVPLYIELPVTVELEVTHT 136
Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 173
+G + + A L G + VP ++ G+++ ++ +D SY+GR
Sbjct: 137 EPGLQGDRSSAGTKPATLQTGAQINVPLFINTGDKLKVDSRDGSYLGR 184
>TIGR_CMR|DET_0870 [details] [associations]
symbol:DET_0870 "translation elongation factor P"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003746
"translation elongation factor activity" evidence=ISS] [GO:0006414
"translational elongation" evidence=ISS] HAMAP:MF_00141
InterPro:IPR001059 InterPro:IPR011768 InterPro:IPR015365
Pfam:PF01132 Pfam:PF09285 SMART:SM00841 UniPathway:UPA00345
GO:GO:0005737 GO:GO:0003746 EMBL:CP000027 GenomeReviews:CP000027_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0043043 eggNOG:COG0231
HOGENOM:HOG000010047 KO:K02356 InterPro:IPR020599
InterPro:IPR013185 InterPro:IPR013852 InterPro:IPR008991
Pfam:PF08207 PIRSF:PIRSF005901 SUPFAM:SSF50104 TIGRFAMs:TIGR00038
PROSITE:PS01275 RefSeq:YP_181596.1 ProteinModelPortal:Q3Z853
STRING:Q3Z853 GeneID:3229818 KEGG:det:DET0870 PATRIC:21608799
OMA:DTFEQHY ProtClustDB:CLSK837229
BioCyc:DETH243164:GJNF-871-MONOMER Uniprot:Q3Z853
Length = 188
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 44/165 (26%), Positives = 85/165 (51%)
Query: 9 YQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDT 68
Y V D + + G+G A+ +++ R++ G + + + + ++ V LY EN
Sbjct: 19 YNVDDVDFMKPGKGSAVYRIKFRNLMDGGILERTYHSGDKLKEADVATYDMQYLYHENGN 78
Query: 69 AFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHAS 128
+ ++TFEQ + D G G +L++GM + +QL + ++P V I E S
Sbjct: 79 YIFMNTDTFEQHYMTEDRMGSRGVFLKDGMVIPVQLLGDAPIEITLPNFVELEIVETSMS 138
Query: 129 TKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 173
T TVT + + A L NG+ + VP++++ G+ I ++ + +Y+ R
Sbjct: 139 TGKETVTAQNKPAKLSNGMEIGVPTFIKAGDIIKVDTRTGAYVER 183
>TAIR|locus:2077888 [details] [associations]
symbol:AT3G08740 species:3702 "Arabidopsis thaliana"
[GO:0003746 "translation elongation factor activity"
evidence=IEA;ISS] [GO:0006414 "translational elongation"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0043043 "peptide biosynthetic process" evidence=IEA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0016226
"iron-sulfur cluster assembly" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] HAMAP:MF_00141
InterPro:IPR001059 InterPro:IPR011768 InterPro:IPR015365
Pfam:PF01132 Pfam:PF09285 SMART:SM00841 GO:GO:0009570 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003746 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:2.30.30.30
InterPro:IPR014722 GO:GO:0043043 eggNOG:COG0231
HOGENOM:HOG000010047 KO:K02356 InterPro:IPR020599
InterPro:IPR013185 InterPro:IPR013852 InterPro:IPR008991
Pfam:PF08207 PIRSF:PIRSF005901 SUPFAM:SSF50104 TIGRFAMs:TIGR00038
PROSITE:PS01275 OMA:DYVFMDM EMBL:AY063783 EMBL:AY117274
EMBL:AY086204 IPI:IPI00529257 RefSeq:NP_566333.1 UniGene:At.27166
ProteinModelPortal:Q8VZW6 SMR:Q8VZW6 IntAct:Q8VZW6 STRING:Q8VZW6
PaxDb:Q8VZW6 PRIDE:Q8VZW6 EnsemblPlants:AT3G08740.1 GeneID:820021
KEGG:ath:AT3G08740 TAIR:At3g08740 InParanoid:Q8VZW6
PhylomeDB:Q8VZW6 ProtClustDB:CLSN2688175 ArrayExpress:Q8VZW6
Genevestigator:Q8VZW6 Uniprot:Q8VZW6
Length = 236
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 43/171 (25%), Positives = 86/171 (50%)
Query: 6 GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVER--VFVEDKSFTCLY 63
G ++V++ H + G+G A ++ ++R+ G+ V F +VE ++ E K FT Y
Sbjct: 68 GAPWRVLEFLHVKPGKGAAFVRTKIRNYVNGSTVERTFRAGISVEEANIYKETKQFT--Y 125
Query: 64 TENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIK 123
+ ++ T+E+ + G+ +L+EGM L + + + +P V +
Sbjct: 126 KDGSQFVFMDLTTYEETRLNESDMGEKTKWLKEGMDCILLYWKDKVIDFDLPITVKLKVV 185
Query: 124 EIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
++ +G TV + A ++ G V VP ++ +GEEIF++ + +Y+ RA
Sbjct: 186 DVDPGLRGDTVQGGSKPATMETGAIVAVPLFINVGEEIFVDTRTGAYMNRA 236
>TIGR_CMR|DET_0714 [details] [associations]
symbol:DET_0714 "translation elongation factor P"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003746
"translation elongation factor activity" evidence=ISS] [GO:0006414
"translational elongation" evidence=ISS] HAMAP:MF_00141
InterPro:IPR001059 InterPro:IPR011768 InterPro:IPR015365
Pfam:PF01132 Pfam:PF09285 SMART:SM00841 UniPathway:UPA00345
GO:GO:0005737 GO:GO:0003746 EMBL:CP000027 GenomeReviews:CP000027_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0043043 eggNOG:COG0231
HOGENOM:HOG000010047 KO:K02356 InterPro:IPR020599
InterPro:IPR013185 InterPro:IPR008991 Pfam:PF08207
PIRSF:PIRSF005901 SUPFAM:SSF50104 TIGRFAMs:TIGR00038
ProtClustDB:PRK00529 OMA:NDIRPGQ RefSeq:YP_181455.1
ProteinModelPortal:Q3Z8J4 STRING:Q3Z8J4 GeneID:3229937
KEGG:det:DET0714 PATRIC:21608491 BioCyc:DETH243164:GJNF-715-MONOMER
Uniprot:Q3Z8J4
Length = 186
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 43/167 (25%), Positives = 83/167 (49%)
Query: 8 MYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 67
++QV+D +H + + A+++++L+DI G+ + F ++E V +E + LY + +
Sbjct: 19 LFQVMDIQHVKM-KHTALLRLKLKDIRDGHTMEQTFQSDEKFNLVNLEYRHMQFLYNDEN 77
Query: 68 TAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHA 127
++ +TFEQ+ + V G A YL E V + + A+ +P V I
Sbjct: 78 VYHFMDDKTFEQIALNKSVLGDAVNYLLENGSVRVMTFQEEAIGVELPASVNLKIAHTEP 137
Query: 128 STKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
KG T + A L+ G+ V VP ++ + I ++ + Y+G+A
Sbjct: 138 GFKGDTAATTTKPATLETGLVVQVPLFINNEDLIRVDTRSGQYLGKA 184
>TIGR_CMR|GSU_1752 [details] [associations]
symbol:GSU_1752 "translation elongation factor P"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003746
"translation elongation factor activity" evidence=ISS] [GO:0006414
"translational elongation" evidence=ISS] HAMAP:MF_00141
InterPro:IPR001059 InterPro:IPR011768 InterPro:IPR015365
Pfam:PF01132 Pfam:PF09285 SMART:SM00841 UniPathway:UPA00345
GO:GO:0005737 GO:GO:0003746 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0043043 eggNOG:COG0231
HOGENOM:HOG000010047 KO:K02356 InterPro:IPR020599
InterPro:IPR013185 InterPro:IPR013852 InterPro:IPR008991
Pfam:PF08207 PIRSF:PIRSF005901 SUPFAM:SSF50104 TIGRFAMs:TIGR00038
PROSITE:PS01275 RefSeq:NP_952802.1 ProteinModelPortal:Q74CC2
GeneID:2685359 KEGG:gsu:GSU1752 PATRIC:22026349 OMA:DYVFMDM
ProtClustDB:PRK00529 BioCyc:GSUL243231:GH27-1728-MONOMER
Uniprot:Q74CC2
Length = 187
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 49/176 (27%), Positives = 92/176 (52%)
Query: 1 MTLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFT 60
+TL G Y VI E + G+G A+ + ++R++ TG + + + E E +E++
Sbjct: 13 LTLD-GAPYLVIAFEFSKPGKGQALYRTKMRNMITGVILDRTYRSGETFEPARLEERRMQ 71
Query: 61 CLYTENDTAFV-IESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVA 119
LY E DT + ++++TFEQ+++ D G A +L + ++V + L+ +A+ ++P V
Sbjct: 72 YLYKE-DTHYTFMDNQTFEQVQMDEDAVGDAKNFLIDNLEVDILLFGEKAIGVTLPNFVN 130
Query: 120 CTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
+ + KG T + A ++ G + VP ++E GE I I+ + Y R K
Sbjct: 131 LRVVQTDPWVKGDTSGSDSKPATVETGYILRVPPFIEEGEMIVIDTRSGEYSTRVK 186
>UNIPROTKB|Q9KNS1 [details] [associations]
symbol:efp "Elongation factor P" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003746 "translation
elongation factor activity" evidence=ISS] [GO:0006414
"translational elongation" evidence=ISS] HAMAP:MF_00141
InterPro:IPR001059 InterPro:IPR011768 InterPro:IPR015365
Pfam:PF01132 Pfam:PF09285 SMART:SM00841 UniPathway:UPA00345
GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003746
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0043043 eggNOG:COG0231
KO:K02356 InterPro:IPR020599 InterPro:IPR013185 InterPro:IPR013852
InterPro:IPR008991 Pfam:PF08207 PIRSF:PIRSF005901 SUPFAM:SSF50104
TIGRFAMs:TIGR00038 PROSITE:PS01275 OMA:DYVFMDM ProtClustDB:PRK00529
PIR:F82047 RefSeq:NP_232288.1 ProteinModelPortal:Q9KNS1
DNASU:2615677 GeneID:2615677 KEGG:vch:VC2660 PATRIC:20084340
Uniprot:Q9KNS1
Length = 188
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 44/165 (26%), Positives = 77/165 (46%)
Query: 11 VIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAF 70
+++ E+ + G+G A ++ +R + TG + F + + E V D LY + +
Sbjct: 24 ILENEYVKPGKGQAFNRVRIRKLLTGKVLEKTFKSGDTAEVADVVDIDLDYLYNDGEFYH 83
Query: 71 VIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTK 130
+ + TFEQL G+ +L E L L++G ++ + P V + E K
Sbjct: 84 FMNNSTFEQLAADAKAVGENAKWLVENNTCMLTLWNGNPIAVTPPNFVELEVTETDPGVK 143
Query: 131 GPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
G T + A L G V VP +++IGE I ++ + Y+GR K
Sbjct: 144 GDTQGTGGKPATLSTGAVVRVPLFVQIGEVIKVDTRSAEYVGRVK 188
>TIGR_CMR|CBU_1816 [details] [associations]
symbol:CBU_1816 "translation elongation factor P"
species:227377 "Coxiella burnetii RSA 493" [GO:0003746 "translation
elongation factor activity" evidence=ISS] [GO:0006414
"translational elongation" evidence=ISS] HAMAP:MF_00141
InterPro:IPR001059 InterPro:IPR011768 InterPro:IPR015365
Pfam:PF01132 Pfam:PF09285 SMART:SM00841 UniPathway:UPA00345
GO:GO:0005737 GO:GO:0003746 EMBL:AE016828 GenomeReviews:AE016828_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0043043 eggNOG:COG0231
HOGENOM:HOG000010047 KO:K02356 InterPro:IPR020599
InterPro:IPR013185 InterPro:IPR013852 InterPro:IPR008991
Pfam:PF08207 PIRSF:PIRSF005901 SUPFAM:SSF50104 TIGRFAMs:TIGR00038
PROSITE:PS01275 OMA:DYVFMDM ProtClustDB:PRK00529 RefSeq:NP_820795.1
PDB:3TRE PDBsum:3TRE ProteinModelPortal:Q83AR4 PRIDE:Q83AR4
GeneID:1209727 KEGG:cbu:CBU_1816 PATRIC:17932367
BioCyc:CBUR227377:GJ7S-1789-MONOMER Uniprot:Q83AR4
Length = 188
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 47/173 (27%), Positives = 80/173 (46%)
Query: 3 LTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCL 62
+ G +ID E + G+G A +++ R++ TG + F + E + V + L
Sbjct: 16 MVDGDPCSIIDNEFVKPGKGQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVEVEMQYL 75
Query: 63 YTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTI 122
Y + + + SE +EQ + +A +L+E + +++G LS P V I
Sbjct: 76 YNDGEFWHFMTSENYEQHAASKEAVAEAKQWLKEEALCMVTMWNGVPLSVEPPNFVELKI 135
Query: 123 KEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
E +G T T +RA L+ G V VP +L GE I ++ + Y+ RAK
Sbjct: 136 TETEPGVRGDTATGGTKRAKLETGAVVRVPLFLNEGEIIKVDTRRGEYVSRAK 188
>TIGR_CMR|VC_2660 [details] [associations]
symbol:VC_2660 "elongation factor P" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003746 "translation elongation
factor activity" evidence=ISS] [GO:0006414 "translational
elongation" evidence=ISS] HAMAP:MF_00141 InterPro:IPR001059
InterPro:IPR011768 InterPro:IPR015365 Pfam:PF01132 Pfam:PF09285
SMART:SM00841 UniPathway:UPA00345 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003746 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:2.30.30.30
InterPro:IPR014722 GO:GO:0043043 eggNOG:COG0231 KO:K02356
InterPro:IPR020599 InterPro:IPR013185 InterPro:IPR013852
InterPro:IPR008991 Pfam:PF08207 PIRSF:PIRSF005901 SUPFAM:SSF50104
TIGRFAMs:TIGR00038 PROSITE:PS01275 OMA:DYVFMDM ProtClustDB:PRK00529
PIR:F82047 RefSeq:NP_232288.1 ProteinModelPortal:Q9KNS1
DNASU:2615677 GeneID:2615677 KEGG:vch:VC2660 PATRIC:20084340
Uniprot:Q9KNS1
Length = 188
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 44/165 (26%), Positives = 77/165 (46%)
Query: 11 VIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAF 70
+++ E+ + G+G A ++ +R + TG + F + + E V D LY + +
Sbjct: 24 ILENEYVKPGKGQAFNRVRIRKLLTGKVLEKTFKSGDTAEVADVVDIDLDYLYNDGEFYH 83
Query: 71 VIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTK 130
+ + TFEQL G+ +L E L L++G ++ + P V + E K
Sbjct: 84 FMNNSTFEQLAADAKAVGENAKWLVENNTCMLTLWNGNPIAVTPPNFVELEVTETDPGVK 143
Query: 131 GPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 175
G T + A L G V VP +++IGE I ++ + Y+GR K
Sbjct: 144 GDTQGTGGKPATLSTGAVVRVPLFVQIGEVIKVDTRSAEYVGRVK 188
>TIGR_CMR|CPS_0972 [details] [associations]
symbol:CPS_0972 "translation elongation factor P"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003746
"translation elongation factor activity" evidence=ISS] [GO:0006414
"translational elongation" evidence=ISS] HAMAP:MF_00141
InterPro:IPR001059 InterPro:IPR011768 InterPro:IPR015365
Pfam:PF01132 Pfam:PF09285 SMART:SM00841 UniPathway:UPA00345
GO:GO:0005737 GO:GO:0003746 EMBL:CP000083 GenomeReviews:CP000083_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0043043 eggNOG:COG0231
HOGENOM:HOG000010047 KO:K02356 InterPro:IPR020599
InterPro:IPR013185 InterPro:IPR013852 InterPro:IPR008991
Pfam:PF08207 PIRSF:PIRSF005901 SUPFAM:SSF50104 TIGRFAMs:TIGR00038
PROSITE:PS01275 OMA:DYVFMDM RefSeq:YP_267721.1 STRING:Q487P4
GeneID:3520133 KEGG:cps:CPS_0972 PATRIC:21465221
BioCyc:CPSY167879:GI48-1058-MONOMER Uniprot:Q487P4
Length = 191
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 44/169 (26%), Positives = 81/169 (47%)
Query: 6 GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
G+ +++ E + G+G A ++++R + +G + F + E VE V + LY +
Sbjct: 19 GEPCNILENELVKPGKGQAFSRVKIRKLVSGKVLEKTFKSGETVEGADVMEVELAYLYAD 78
Query: 66 NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 125
+ + +ETFEQ+ G+ +L EG + L++G ++ + V I E
Sbjct: 79 GEFWHFMNNETFEQIGAEEKALGETVKWLVEGDICTITLWNGTPITVTAANFVEIDITET 138
Query: 126 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
KG T + A L G V VP +++IGE++ I+ + Y+ RA
Sbjct: 139 DPGLKGDTAGTGGKPATLATGAVVRVPLFVQIGEKVRIDTRSGEYVSRA 187
>UNIPROTKB|P0A6N8 [details] [associations]
symbol:yeiP "predicted dehydrogenase, NAD-dependent"
species:83333 "Escherichia coli K-12" [GO:0043043 "peptide
biosynthetic process" evidence=IEA] [GO:0006414 "translational
elongation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001059 InterPro:IPR015365 Pfam:PF01132 Pfam:PF09285
SMART:SM00841 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003746
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:U00007
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0043043 eggNOG:COG0231
KO:K02356 InterPro:IPR020599 InterPro:IPR013185 InterPro:IPR013852
InterPro:IPR008991 Pfam:PF08207 PIRSF:PIRSF005901 SUPFAM:SSF50104
PROSITE:PS01275 HOGENOM:HOG000010049 OMA:FMDNEDY
ProtClustDB:PRK04542 HAMAP:MF_00646 InterPro:IPR011897
TIGRFAMs:TIGR02178 EMBL:D21148 PIR:B64986 RefSeq:NP_416676.4
RefSeq:YP_490411.1 ProteinModelPortal:P0A6N8 SMR:P0A6N8
MINT:MINT-1302160 PaxDb:P0A6N8 PRIDE:P0A6N8
EnsemblBacteria:EBESCT00000000640 EnsemblBacteria:EBESCT00000015053
GeneID:12931472 GeneID:946674 KEGG:ecj:Y75_p2134 KEGG:eco:b2171
PATRIC:32119697 EchoBASE:EB1970 EcoGene:EG12035
BioCyc:EcoCyc:EG12035-MONOMER BioCyc:ECOL316407:JW5362-MONOMER
Genevestigator:P0A6N8 Uniprot:P0A6N8
Length = 190
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 48/173 (27%), Positives = 83/173 (47%)
Query: 6 GKMYQVIDAE-HKQRGRGGAMM-QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLY 63
GK+ V D + RG A + +M D+ TG KV RF ++ V+ V + + Y
Sbjct: 17 GKLLLVKDIDIQSPTARGAATLYKMRFSDVRTGLKVEERFKGDDIVDTVTLTRRYVDFSY 76
Query: 64 TENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQL--YDGRALSGSIPKRVACT 121
+ + ++ E + D + ++ EG +Q+ +DG+ L+ +P+ V
Sbjct: 77 VDGNEYVFMDKEDYTPYTFTKDQIEEELLFMPEGGMPDMQVLTWDGQLLALELPQTVDLE 136
Query: 122 IKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
I E KG + + R + A L G+ + VP YL GE+I I+ ++ Y+GRA
Sbjct: 137 IVETAPGIKGASASARNKPATLSTGLVIQVPEYLSPGEKIRIHIEERRYMGRA 189
>UNIPROTKB|Q9KSP7 [details] [associations]
symbol:VC_1209 "Elongation factor P-like protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003746 "translation elongation factor activity" evidence=ISS]
[GO:0006414 "translational elongation" evidence=ISS]
InterPro:IPR001059 InterPro:IPR015365 Pfam:PF01132 Pfam:PF09285
SMART:SM00841 GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003746 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0043043 eggNOG:COG0231
KO:K02356 InterPro:IPR020599 InterPro:IPR013185 InterPro:IPR013852
InterPro:IPR008991 Pfam:PF08207 PIRSF:PIRSF005901 SUPFAM:SSF50104
PROSITE:PS01275 OMA:FMDNEDY ProtClustDB:PRK04542 HAMAP:MF_00646
InterPro:IPR011897 TIGRFAMs:TIGR02178 PIR:D82229 RefSeq:NP_230854.2
ProteinModelPortal:Q9KSP7 DNASU:2614642 GeneID:2614642
KEGG:vch:VC1209 PATRIC:20081506 Uniprot:Q9KSP7
Length = 188
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 45/177 (25%), Positives = 85/177 (48%)
Query: 3 LTTGKMYQVIDAE-HKQRGRGGAMM-QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFT 60
++ GK + D E GRGG+ + ++ D++TG +V R+ +++ ++ V + + +
Sbjct: 14 ISNGKTLLIKDIEVTTPGGRGGSKIYKLRCTDLNTGARVDERYKSDDVLDTVEMNKRPIS 73
Query: 61 CLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQE---GMKVWLQLYDGRALSGSIPKR 117
Y + D + ++ + D ++ E GM V L DG A++ +P
Sbjct: 74 FSYIDGDEYVFMNNDDYTPYNFKKDEIEDELLFITEEIQGMSV--VLVDGEAVAIELPSS 131
Query: 118 VACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
V I+E S KG + + R + A + G+ V VP Y+ G+ I IN + ++ RA
Sbjct: 132 VEMVIEETDPSIKGASASSRTKPARMPTGLVVQVPEYIATGDRIVINTAERKFMNRA 188
>TIGR_CMR|VC_1209 [details] [associations]
symbol:VC_1209 "elongation factor P family protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003746
"translation elongation factor activity" evidence=ISS] [GO:0006414
"translational elongation" evidence=ISS] InterPro:IPR001059
InterPro:IPR015365 Pfam:PF01132 Pfam:PF09285 SMART:SM00841
GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003746
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0043043 eggNOG:COG0231
KO:K02356 InterPro:IPR020599 InterPro:IPR013185 InterPro:IPR013852
InterPro:IPR008991 Pfam:PF08207 PIRSF:PIRSF005901 SUPFAM:SSF50104
PROSITE:PS01275 OMA:FMDNEDY ProtClustDB:PRK04542 HAMAP:MF_00646
InterPro:IPR011897 TIGRFAMs:TIGR02178 PIR:D82229 RefSeq:NP_230854.2
ProteinModelPortal:Q9KSP7 DNASU:2614642 GeneID:2614642
KEGG:vch:VC1209 PATRIC:20081506 Uniprot:Q9KSP7
Length = 188
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 45/177 (25%), Positives = 85/177 (48%)
Query: 3 LTTGKMYQVIDAE-HKQRGRGGAMM-QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFT 60
++ GK + D E GRGG+ + ++ D++TG +V R+ +++ ++ V + + +
Sbjct: 14 ISNGKTLLIKDIEVTTPGGRGGSKIYKLRCTDLNTGARVDERYKSDDVLDTVEMNKRPIS 73
Query: 61 CLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQE---GMKVWLQLYDGRALSGSIPKR 117
Y + D + ++ + D ++ E GM V L DG A++ +P
Sbjct: 74 FSYIDGDEYVFMNNDDYTPYNFKKDEIEDELLFITEEIQGMSV--VLVDGEAVAIELPSS 131
Query: 118 VACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
V I+E S KG + + R + A + G+ V VP Y+ G+ I IN + ++ RA
Sbjct: 132 VEMVIEETDPSIKGASASSRTKPARMPTGLVVQVPEYIATGDRIVINTAERKFMNRA 188
>TIGR_CMR|CPS_1465 [details] [associations]
symbol:CPS_1465 "elongation factor P-like protein YeiP"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003746
"translation elongation factor activity" evidence=ISS] [GO:0006414
"translational elongation" evidence=ISS] InterPro:IPR001059
InterPro:IPR015365 Pfam:PF01132 Pfam:PF09285 SMART:SM00841
GO:GO:0005737 GO:GO:0003746 EMBL:CP000083 GenomeReviews:CP000083_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0043043 eggNOG:COG0231
KO:K02356 InterPro:IPR020599 InterPro:IPR013185 InterPro:IPR013852
InterPro:IPR008991 Pfam:PF08207 PIRSF:PIRSF005901 SUPFAM:SSF50104
PROSITE:PS01275 RefSeq:YP_268207.1 ProteinModelPortal:Q485Q8
STRING:Q485Q8 GeneID:3522353 KEGG:cps:CPS_1465 PATRIC:21466137
HOGENOM:HOG000010049 OMA:FMDNEDY ProtClustDB:PRK04542
BioCyc:CPSY167879:GI48-1546-MONOMER HAMAP:MF_00646
InterPro:IPR011897 TIGRFAMs:TIGR02178 Uniprot:Q485Q8
Length = 191
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 41/172 (23%), Positives = 83/172 (48%)
Query: 6 GKMYQVIDAEHK-QRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLY 63
GK+ V D +GR GG++ +M L D+ TG KV F E+ + + + Y
Sbjct: 17 GKVLIVRDITRSVPQGRAGGSLYRMRLYDVVTGGKVDETFKAEDMLNFADLSRRPSMFSY 76
Query: 64 TENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMK-VWLQLYDGRALSGSIPKRVACTI 122
+ + +++E + + + ++ E + + + + D + ++P V I
Sbjct: 77 IDGEEYVFMDNEDYTPYNLNKESIADEILFIDEETQGISVIIVDDAPVGIALPASVELLI 136
Query: 123 KEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 174
E S KG + + R + ALL G+T+ VP ++ G+++ +N ++ ++GRA
Sbjct: 137 TETDPSIKGASASARTKPALLSTGLTIQVPEHISTGDKVKVNTEERKFMGRA 188
>TIGR_CMR|SO_2328 [details] [associations]
symbol:SO_2328 "translation elongation factor P"
species:211586 "Shewanella oneidensis MR-1" [GO:0003746
"translation elongation factor activity" evidence=ISS] [GO:0006414
"translational elongation" evidence=ISS] HAMAP:MF_00141
InterPro:IPR001059 InterPro:IPR011768 InterPro:IPR015365
Pfam:PF01132 Pfam:PF09285 SMART:SM00841 UniPathway:UPA00345
GO:GO:0005737 GO:GO:0003746 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0043043 eggNOG:COG0231
HOGENOM:HOG000010047 KO:K02356 InterPro:IPR020599
InterPro:IPR013185 InterPro:IPR008991 Pfam:PF08207
PIRSF:PIRSF005901 SUPFAM:SSF50104 TIGRFAMs:TIGR00038
PROSITE:PS01275 OMA:DYVFMDM ProtClustDB:PRK00529 RefSeq:NP_717918.1
ProteinModelPortal:Q8EEP9 GeneID:1170052 KEGG:son:SO_2328
PATRIC:23524279 Uniprot:Q8EEP9
Length = 186
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 38/167 (22%), Positives = 81/167 (48%)
Query: 6 GKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 65
G + V E + GR A+++++L+++ + F E+ ++ + ++ T Y
Sbjct: 17 GSPWVVQKTETTRSGRNAAIVKLKLKNLLLNSGTETTFKGEDKIDDIILDRLDCTYSYFA 76
Query: 66 NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQL--YDGRALSGSIPKRVACTIK 123
D +V + Q +V + G A AY+ +GM+ Q+ YDG+A+S +P + +
Sbjct: 77 -DPMYVFMDAEYNQYDVEAENLGDAAAYIVDGMEETCQVTFYDGKAISVEMPTTIVREVI 135
Query: 124 EIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSY 170
S +G T + A + G T+ V ++++G++I I+ + +
Sbjct: 136 YTEPSARGDTSGKVMKPATITGGGTISVADFVKVGDKIEIDTRTGEF 182
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 175 175 0.00078 109 3 11 22 0.42 32
31 0.49 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 589 (63 KB)
Total size of DFA: 146 KB (2089 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.43u 0.11s 15.54t Elapsed: 00:00:01
Total cpu time: 15.44u 0.11s 15.55t Elapsed: 00:00:01
Start: Sat May 11 05:12:43 2013 End: Sat May 11 05:12:44 2013