Query 030538
Match_columns 175
No_of_seqs 132 out of 1156
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 00:55:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ueb_A EF-P, TT0860, elongatio 100.0 1.4E-76 4.7E-81 477.5 25.6 172 2-174 13-184 (184)
2 3oyy_A EF-P, elongation factor 100.0 2.5E-76 8.6E-81 478.3 24.8 173 2-175 16-190 (191)
3 3tre_A EF-P, elongation factor 100.0 4.2E-77 1.4E-81 482.9 17.1 174 2-175 18-191 (191)
4 3a5z_B EF-P, elongation factor 100.0 8.9E-78 3E-82 486.7 12.4 174 2-175 18-191 (191)
5 1yby_A Translation elongation 100.0 8.4E-76 2.9E-80 482.3 24.1 173 2-174 43-215 (215)
6 1bkb_A Translation initiation 100.0 5.6E-40 1.9E-44 252.7 16.7 112 2-113 20-133 (136)
7 1iz6_A Initiation factor 5A; S 100.0 6.6E-39 2.2E-43 247.4 16.3 109 2-110 18-129 (138)
8 3cpf_A Eukaryotic translation 100.0 1.8E-38 6.1E-43 245.0 12.8 105 2-106 18-126 (138)
9 2eif_A IF-5A, protein (eukaryo 100.0 2.6E-37 8.7E-42 238.0 16.8 107 2-111 22-129 (136)
10 1x6o_A Eukaryotic initiation f 100.0 1.6E-35 5.6E-40 236.1 14.2 105 2-106 42-158 (174)
11 3er0_A Eukaryotic translation 100.0 3.2E-36 1.1E-40 238.8 8.1 105 2-106 42-150 (167)
12 3hks_A EIF-5A-2, eukaryotic tr 100.0 2.4E-34 8.3E-39 227.9 13.3 105 2-106 40-150 (167)
13 1khi_A HEX1; membrane sealing, 99.3 1.8E-11 6E-16 97.2 12.8 101 2-108 46-162 (176)
14 4a1y_A Myelin P2 protein; tran 66.8 9.1 0.00031 28.2 4.9 46 27-72 50-96 (133)
15 3ppt_A Sodium-calcium exchange 63.1 16 0.00056 26.7 5.8 45 27-71 48-93 (133)
16 1mvg_A Liver basic fatty acid 60.5 17 0.00057 26.3 5.3 45 27-71 46-91 (125)
17 1mdc_A Insect fatty acid bindi 60.2 22 0.00075 25.9 6.0 45 27-71 48-93 (132)
18 1b56_A Fatty acid binding prot 59.4 18 0.00063 26.4 5.4 45 27-71 51-96 (135)
19 1ifc_A Intestinal fatty acid b 59.3 18 0.00063 26.3 5.4 45 27-71 47-92 (132)
20 1o8v_A Fatty acid binding prot 58.7 20 0.00069 26.2 5.6 44 28-71 51-95 (134)
21 1dj7_B Ferredoxin thioredoxin 58.1 2.3 7.8E-05 28.9 0.2 19 103-121 40-58 (75)
22 1vyf_A SM14, 14 kDa fatty acid 57.9 21 0.00071 26.1 5.5 44 28-71 51-96 (135)
23 2a0a_A DER F 13; beta barrel, 56.5 26 0.00089 25.4 5.8 44 28-71 49-94 (131)
24 1fdq_A Fatty acid-binding prot 55.7 17 0.00059 26.4 4.7 45 27-71 48-93 (131)
25 2jn4_A Hypothetical protein FI 54.3 36 0.0012 23.5 5.8 52 96-154 20-72 (87)
26 3rsw_A Fatty acid-binding prot 54.0 22 0.00076 27.0 5.2 44 28-71 75-119 (158)
27 4a60_A Fatty acid-binding prot 53.9 21 0.00071 27.0 5.0 45 28-72 72-117 (154)
28 1ggl_A Protein (cellular retin 52.3 24 0.00083 25.7 5.1 45 27-71 48-95 (134)
29 2qo4_A Liver-basic fatty acid 52.3 16 0.00054 26.4 4.0 45 28-72 48-93 (126)
30 3p6d_A Fatty acid-binding prot 51.9 31 0.0011 25.4 5.6 45 27-71 56-101 (139)
31 3q6l_A Fatty acid-binding prot 51.9 30 0.001 26.0 5.6 45 27-71 69-114 (152)
32 1lpj_A Retinol-binding protein 51.7 27 0.00094 25.3 5.3 45 27-71 48-95 (133)
33 1ftp_A Muscle fatty acid bindi 51.1 28 0.00095 25.3 5.2 45 27-71 50-96 (133)
34 1p6p_A Fatty acid-binding prot 50.9 15 0.00052 26.5 3.7 45 27-71 46-91 (125)
35 2rcq_A CRBP-II, retinol-bindin 49.7 26 0.00088 25.9 4.9 45 27-71 52-99 (141)
36 1crb_A Cellular retinol bindin 49.6 23 0.0008 25.8 4.6 45 27-71 48-95 (134)
37 2f73_A L-FABP, fatty acid-bind 46.6 25 0.00087 26.3 4.4 45 27-71 69-115 (149)
38 3j20_E 30S ribosomal protein S 45.8 11 0.00038 30.8 2.5 35 138-172 137-175 (243)
39 1eal_A Gastrotropin, ileal lip 45.5 27 0.00093 25.2 4.4 44 28-71 47-92 (127)
40 2lba_A BABP protein; ileal bIl 45.3 26 0.0009 25.7 4.3 46 27-72 51-98 (136)
41 1yfb_A Transition state regula 43.9 32 0.0011 21.7 4.0 34 75-110 19-52 (59)
42 3kbg_A 30S ribosomal protein S 41.8 38 0.0013 27.1 5.0 33 140-172 102-135 (213)
43 2g7b_A Cellular retinoic acid- 41.8 31 0.0011 25.2 4.2 45 27-71 49-95 (137)
44 3iz6_D 40S ribosomal protein S 40.1 31 0.0011 28.6 4.3 72 95-172 94-171 (265)
45 1jt8_A EIF-1A, probable transl 39.9 37 0.0013 24.0 4.2 50 109-166 9-70 (102)
46 3vg7_A Fatty acid-binding prot 36.0 38 0.0013 24.6 3.9 46 27-72 50-97 (132)
47 3elx_A Ileal bIle acid-binding 35.8 26 0.00088 25.9 2.9 45 27-71 50-96 (138)
48 2xzm_W 40S ribosomal protein S 35.6 37 0.0013 28.0 4.1 33 138-170 138-171 (260)
49 3o27_A Putative uncharacterize 33.1 48 0.0016 21.9 3.5 34 74-110 22-57 (68)
50 3u5c_E RP5, S7, YS6, 40S ribos 33.0 35 0.0012 28.2 3.5 35 138-172 136-171 (261)
51 2ki8_A Tungsten formylmethanof 32.6 24 0.00082 26.0 2.3 21 154-174 66-86 (146)
52 3qx1_A FAS-associated factor 1 30.2 56 0.0019 21.4 3.7 44 24-73 6-51 (84)
53 2jv2_A Putative uncharacterize 29.8 46 0.0016 22.5 3.2 25 95-128 43-67 (83)
54 2dgy_A MGC11102 protein; EIF-1 29.7 1.3E+02 0.0044 21.4 5.7 29 138-166 29-65 (111)
55 4h87_A Kanadaptin; FHA domain 29.1 25 0.00085 25.4 1.8 31 142-172 96-128 (130)
56 3bk5_A Putative outer membrane 25.6 1.3E+02 0.0045 22.9 5.6 40 5-44 176-217 (237)
57 1wjn_A Tubulin-folding protein 25.0 65 0.0022 21.5 3.3 32 19-50 3-36 (97)
58 1mvf_D MAZE protein, PEMI-like 24.7 75 0.0026 20.7 3.5 31 78-110 13-43 (82)
59 3u30_A Ubiquitin, linear DI-ub 24.6 92 0.0032 22.8 4.4 93 20-115 15-114 (172)
60 1h95_A CSD, Y-box binding prot 23.0 80 0.0027 20.8 3.4 51 65-115 18-78 (79)
61 1mhx_A Immunoglobulin-binding 22.9 31 0.0011 22.1 1.2 15 152-166 13-27 (65)
62 1wlf_A PEX1, peroxisome biogen 22.9 84 0.0029 23.9 3.9 27 116-151 149-175 (179)
63 1t9f_A Protein 1D10; structura 22.3 2.6E+02 0.0088 21.2 7.1 122 27-172 12-144 (187)
64 1d7q_A Translation initiation 22.1 2.5E+02 0.0084 20.9 6.5 43 117-167 32-82 (143)
65 2l66_A SSO7C4, transcriptional 22.1 41 0.0014 20.3 1.6 32 75-108 9-40 (53)
66 3gqs_A Adenylate cyclase-like 20.4 42 0.0014 22.9 1.6 54 48-102 39-92 (106)
No 1
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=100.00 E-value=1.4e-76 Score=477.45 Aligned_cols=172 Identities=28% Similarity=0.567 Sum_probs=170.9
Q ss_pred eEEcCcEEEEEEeEEecCCCCCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCcceee
Q 030538 2 TLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLE 81 (175)
Q Consensus 2 ~~~~g~~~~V~~~~h~kpGkG~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi~ 81 (175)
|++||+||+|++++|+|||||+|++|+|||||+||+++|++|++++++|.|++++++|||||.||+.|+|||+|||||++
T Consensus 13 i~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dgd~~~FMD~etyeq~~ 92 (184)
T 1ueb_A 13 VKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPEGEEMVFMDLETYEQFA 92 (184)
T ss_dssp EEETTEEEEEEEEEEEEETTSCCEEEEEEEESSSSCEEEEEEETTCEEEECCEEEEEEEEEEEETTEEEEEETTTCCEEE
T ss_pred EEECCEEEEEEEEEEeeCCCCceEEEEEEEECCCCCEEEEEECCCCEEEeeeEEEEEEEEEEeCCCEEEEeeCCCceeEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhhchhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCceEEEeecccEEEcccceeCCCEE
Q 030538 82 VPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEI 161 (175)
Q Consensus 82 l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~Gd~I 161 (175)
||++.+|++ +||+|||+|.+++|+|+||+|+||++|+|+|++|+|++|||||++++|||+||||++|+||+||++||+|
T Consensus 93 l~~~~lgd~-~~L~eg~~v~v~~~~g~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG~~v~VP~fi~~Gd~I 171 (184)
T 1ueb_A 93 VPRSRVVGA-EFFKEGMTALGDMYEGQPIKVTPPTVVELKVVDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVI 171 (184)
T ss_dssp EEGGGBTTG-GGCCTTCEEEEEEETTEEEEEECCSEEEEEEEECCSSSCCSSSSCSEEEEEETTSCEEEEETTCCTTCEE
T ss_pred cCHHHcChh-hhcCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCCccEEEcCCCEEEeCCcCcCCCEE
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeeec
Q 030538 162 FINPQDDSYIGRA 174 (175)
Q Consensus 162 ~V~T~~g~Y~~R~ 174 (175)
+||||||+|++||
T Consensus 172 ~vdT~~g~Y~~R~ 184 (184)
T 1ueb_A 172 KVDTRTGEYVGRA 184 (184)
T ss_dssp EEETTTTEEEEEC
T ss_pred EEECCCCeEeccC
Confidence 9999999999997
No 2
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2.5e-76 Score=478.25 Aligned_cols=173 Identities=23% Similarity=0.427 Sum_probs=169.1
Q ss_pred eEEcCcEEEEEEeEEecCCCCCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCcceee
Q 030538 2 TLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLE 81 (175)
Q Consensus 2 ~~~~g~~~~V~~~~h~kpGkG~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi~ 81 (175)
|++||+||+|++++|+|||||+|++|+|||||+||++++++|+++++++.|+++++++||||.||+.|+||| |||||++
T Consensus 16 I~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd~~~FMD-etyEq~~ 94 (191)
T 3oyy_A 16 ANINGAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFADPLYVFMD-SEFNQYE 94 (191)
T ss_dssp EEETTEEEEEEEEEEECCTTSCCEEEEEEEETTTCCEEEEEEETTCEEEECCCEEEEEEEEEECSSSEEEEE-TTCCEEE
T ss_pred EEECCEEEEEEEEEeeeCCCCcEEEEEEEEECCCCCEEEEEeCCCCEEEeeeEEEEEEEEEEecCCEEEEEe-cChhhee
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred cCchhhhchhhccCCCCE--EEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCceEEEeecccEEEcccceeCCC
Q 030538 82 VPLDVFGKAGAYLQEGMK--VWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGE 159 (175)
Q Consensus 82 l~~~~lgd~~~~L~eg~~--v~v~~~~~~~i~v~lP~~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~Gd 159 (175)
||++.+||+.+||+|||+ |.+++|+|+||+|+||++|+|+|++|+|++|||||++++|||+||||++|+||+||++||
T Consensus 95 l~~~~lgd~~~~L~eg~~~~v~v~~~~~~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG~~v~VP~fi~~Gd 174 (191)
T 3oyy_A 95 IEKDDLEGVLTFIEDGMTDICEAVFYNDKVISVELPTTIVRQIAYTEPAVRGDTSGKVMKTARLNNGAELQVSAFCEIGD 174 (191)
T ss_dssp ECGGGCTTTGGGCCTTCCCCEEEEEETTEEEEEECCSEEEEEEEEECCCCSCCCC--CEEEEEETTSCEEEEETTCCTTC
T ss_pred CChHHhhhHHhhCcCCCEeEEEEEEECCEEEEEECCCEEEEEEEEcCCCccccccCCCCceEEEeCCCEEEeCCeeeCCC
Confidence 999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceeeecC
Q 030538 160 EIFINPQDDSYIGRAK 175 (175)
Q Consensus 160 ~I~V~T~~g~Y~~R~~ 175 (175)
+|+||||||+|++|||
T Consensus 175 ~I~VdT~~g~Y~~R~k 190 (191)
T 3oyy_A 175 SIEIDTRTGEYKSRVK 190 (191)
T ss_dssp EEEEETTTTEEEEEC-
T ss_pred EEEEECCCCeEhhhcc
Confidence 9999999999999996
No 3
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=100.00 E-value=4.2e-77 Score=482.87 Aligned_cols=174 Identities=27% Similarity=0.447 Sum_probs=116.3
Q ss_pred eEEcCcEEEEEEeEEecCCCCCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCcceee
Q 030538 2 TLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLE 81 (175)
Q Consensus 2 ~~~~g~~~~V~~~~h~kpGkG~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi~ 81 (175)
|++||+||+|++++|+|||||+|++|+|||||+||++++++|++++++|.|+++++++||||.||+.|+|||+|||||++
T Consensus 18 I~~dG~p~~Vve~~~~KpGKG~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd~~~FMD~etyEq~~ 97 (191)
T 3tre_A 18 VMVDGDPCSIIDNEFVKPGKGQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVEVEMQYLYNDGEFWHFMTSENYEQHA 97 (191)
T ss_dssp EEETTEEEEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEETTCEECBCCEEEEEEEEEEECSSCEEEEESSSCCEEE
T ss_pred EEECCEEEEEEEEEEeeCCCCceEEEEEEEECCCCCEEEEEeCCCCEEEeceEEEEEEEEEEEcCCcEEEccCCchHhee
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhhchhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCceEEEeecccEEEcccceeCCCEE
Q 030538 82 VPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEI 161 (175)
Q Consensus 82 l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~Gd~I 161 (175)
||++.+||+.+||+|||+|.+++|+|+||+|+||++|+|+|++|+|++|||||++++|||+||||++|+||+||++||+|
T Consensus 98 l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG~~v~VP~fi~~Gd~I 177 (191)
T 3tre_A 98 ASKEAVAEAKQWLKEEALCMVTMWNGVPLSVEPPNFVELKITETEPGVRGDTATGGTKRAKLETGAVVRVPLFLNEGEII 177 (191)
T ss_dssp ECHHHHGGGGGGCCTTCEEEEEEETTEEEEEECCSCC-------------------------------------------
T ss_pred cchhHhhhHHhhCCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCcCeEEEeCCCEEEeCCeEcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeeecC
Q 030538 162 FINPQDDSYIGRAK 175 (175)
Q Consensus 162 ~V~T~~g~Y~~R~~ 175 (175)
+||||||+|++|||
T Consensus 178 ~VdT~~g~Y~~R~k 191 (191)
T 3tre_A 178 KVDTRRGEYVSRAK 191 (191)
T ss_dssp --------------
T ss_pred EEECCCCeEecccC
Confidence 99999999999996
No 4
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Probab=100.00 E-value=8.9e-78 Score=486.74 Aligned_cols=174 Identities=28% Similarity=0.472 Sum_probs=121.3
Q ss_pred eEEcCcEEEEEEeEEecCCCCCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCcceee
Q 030538 2 TLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLE 81 (175)
Q Consensus 2 ~~~~g~~~~V~~~~h~kpGkG~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi~ 81 (175)
|++||+||+|++++|+|||||+|++|+|||||+||+++|++||+++++|.|+++++++||||.||+.|+|||+|||||++
T Consensus 18 I~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dgd~~~FMD~etyeQ~~ 97 (191)
T 3a5z_B 18 IMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLS 97 (191)
T ss_dssp EEETTEEEEEEEEEEECCTTCCCEEEEEEEEGGGTEEEEEEEETTCEEEECCEEEECCEEEEECSSCEEEECTTTCCEEE
T ss_pred EEECCEEEEEEEEEEEcCCCCcEEEEEEEEECCCCCEEEEEECCCCEEEeeEEEEEEEEEEEeCCCEEEEeeCCCCeEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhhchhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCceEEEeecccEEEcccceeCCCEE
Q 030538 82 VPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEI 161 (175)
Q Consensus 82 l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~Gd~I 161 (175)
||++.+||+.+||+|||+|.+++|+|+||+|+||++|+|+|++|+|++|||||++++|||+||||++|+||+||++||+|
T Consensus 98 l~~~~lgd~~~~l~e~~~v~v~~~~g~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG~~v~VP~fi~~Gd~I 177 (191)
T 3a5z_B 98 ADAKAIGDNAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVI 177 (191)
T ss_dssp ECHHHHCTTTTTCCSSEECEEEEETTEEEEEECCSCCCCCCC--------------------------------------
T ss_pred ccHHHhhhHHhhcCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCCccEEEeCCCEEEeCCcEeCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeeecC
Q 030538 162 FINPQDDSYIGRAK 175 (175)
Q Consensus 162 ~V~T~~g~Y~~R~~ 175 (175)
+||||||+|++|||
T Consensus 178 ~VdT~~g~Y~~R~~ 191 (191)
T 3a5z_B 178 KVDTRSGEYVSRVK 191 (191)
T ss_dssp --------------
T ss_pred EEECCCCeEeeccC
Confidence 99999999999996
No 5
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=100.00 E-value=8.4e-76 Score=482.33 Aligned_cols=173 Identities=26% Similarity=0.479 Sum_probs=162.9
Q ss_pred eEEcCcEEEEEEeEEecCCCCCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCcceee
Q 030538 2 TLTTGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLE 81 (175)
Q Consensus 2 ~~~~g~~~~V~~~~h~kpGkG~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi~ 81 (175)
|++||+||+|++++|+|||||+|++|+|||||+||+++|++|++++++|.|++++++|||||.||+.|+|||+|||||++
T Consensus 43 I~idG~p~~Vve~~hvKPGKG~A~vr~klknl~TG~~~e~tf~s~ekve~a~verr~~QylY~Dgd~y~FMD~ETyEQi~ 122 (215)
T 1yby_A 43 FELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQYLYNDGDLYYFMDTETFEQLP 122 (215)
T ss_dssp EEETTEEEEEEEEEEECCC--CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEEEEEEEEETTEEEEECTTTCCEEE
T ss_pred EEECCEEEEEEEEEEEcCCCCceEEEEEEEECCCCCEEEEEECCCCEEecceEEEEEEEEEEeCCCEEEEccCCCCeeEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhhchhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCceEEEeecccEEEcccceeCCCEE
Q 030538 82 VPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEI 161 (175)
Q Consensus 82 l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~Gd~I 161 (175)
||++.+||+.+||+|||+|.+++|+|+||+|+||++|+|+|++|+|++|||||++++|||+||||++|+||+||++||+|
T Consensus 123 l~~~~lgd~~~fLkEg~~v~v~~~~g~~i~velP~~V~l~V~eteP~vkGdTa~~~~KpA~leTG~~v~VP~FI~~Gd~I 202 (215)
T 1yby_A 123 LGKDKIGDALKFVKENEIVKVLSHKGNVFGIEPPNFVELEVTDTEPGFKGDTATGATKPAIVETGASIKVPLFVNKGDII 202 (215)
T ss_dssp EEHHHHTTTTTTCCTTCEEEEEEETTEEEEEECCSEEEEEEEEC-------CCSCCEEEEEETTSCEEEEETTCCTTCEE
T ss_pred ecHHHhhhHHhhCCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCccccccCCCCccEEEeCCcEEEeCCcEeCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeeec
Q 030538 162 FINPQDDSYIGRA 174 (175)
Q Consensus 162 ~V~T~~g~Y~~R~ 174 (175)
+||||||+|++||
T Consensus 203 ~VdT~~g~Y~~R~ 215 (215)
T 1yby_A 203 RIDTRTGEYMERV 215 (215)
T ss_dssp EEETTTTEEEEEC
T ss_pred EEECCCCeEeccC
Confidence 9999999999997
No 6
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=5.6e-40 Score=252.73 Aligned_cols=112 Identities=19% Similarity=0.237 Sum_probs=108.3
Q ss_pred eEEcCcEEEEEEeEEecCCCC-CcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCccee
Q 030538 2 TLTTGKMYQVIDAEHKQRGRG-GAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQL 80 (175)
Q Consensus 2 ~~~~g~~~~V~~~~h~kpGkG-~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi 80 (175)
|+++|+||+|++++|+||||| +|++|+++|||+||+++|++|+|+++++.|+++++++||||.||+.|+|||+|||||+
T Consensus 20 i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~~~qylY~dg~~~~fMD~etyeq~ 99 (136)
T 1bkb_A 20 VVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILSVSGDVIQLMDMRDYKTI 99 (136)
T ss_dssp EEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEEEEEEEECSSEEEEEETTTCCEE
T ss_pred EEECCEEEEEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeeeceEEEEEEEEEEecCCEEEEEeCCCCeEE
Confidence 789999999999999999995 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCchh-hhchhhccCCCCEEEEEEECCEEEEEe
Q 030538 81 EVPLDV-FGKAGAYLQEGMKVWLQLYDGRALSGS 113 (175)
Q Consensus 81 ~l~~~~-lgd~~~~L~eg~~v~v~~~~~~~i~v~ 113 (175)
+|+.+. +|++.+||+||++|.+++|+|++.-+.
T Consensus 100 ~l~~~~~~gd~~~~l~e~~~v~v~~~~g~~~~~~ 133 (136)
T 1bkb_A 100 EVPMKYVEEEAKGRLAPGAEVEVWQILDRYKIIR 133 (136)
T ss_dssp EEEGGGBCHHHHTTCCTTCEEEEEEETTEEEEEE
T ss_pred EeccccchhHHHhhCCCCCEEEEEEECCEEEEEE
Confidence 999999 999999999999999999999886543
No 7
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=6.6e-39 Score=247.42 Aligned_cols=109 Identities=22% Similarity=0.276 Sum_probs=106.5
Q ss_pred eEEcCcEEEEEEeEEecCCC-CCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCccee
Q 030538 2 TLTTGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQL 80 (175)
Q Consensus 2 ~~~~g~~~~V~~~~h~kpGk-G~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi 80 (175)
|+++|+||+|++++|+|||| |+|++|+++|||+||++++++|+++++++.|+++++++||||.||+.|+|||+|||||+
T Consensus 18 i~~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qylY~dg~~~~fMD~etyeq~ 97 (138)
T 1iz6_A 18 IIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAITPDTVQIMDMETYETF 97 (138)
T ss_dssp EEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEECSSEEEEECTTTCCEE
T ss_pred EEECCEEEEEEEEEeecCCCCCceEEEEEEEECCCCCEEEEEecCCCEEeeceEEEEEEEEEEeCCCEEEEEeCCCCceE
Confidence 78999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ec--CchhhhchhhccCCCCEEEEEEECCEEE
Q 030538 81 EV--PLDVFGKAGAYLQEGMKVWLQLYDGRAL 110 (175)
Q Consensus 81 ~l--~~~~lgd~~~~L~eg~~v~v~~~~~~~i 110 (175)
+| |.+.+|++.+||+||++|.++++.|+..
T Consensus 98 ~l~~~~~~lgd~~~~l~e~~~V~v~~~~G~~~ 129 (138)
T 1iz6_A 98 EVPIDTGVADEIRDQLKEGINVEYWETLGRIK 129 (138)
T ss_dssp EEEHHHHBCGGGTTTCCTTCEEEEEEETTEEE
T ss_pred EeeCCHHHHHHHHHhCCCCCEEEEEEECCcEE
Confidence 99 9999999999999999999999999764
No 8
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=244.99 Aligned_cols=105 Identities=12% Similarity=0.184 Sum_probs=99.7
Q ss_pred eEEcCcEEEEEEeEEecCCCC-CcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCccee
Q 030538 2 TLTTGKMYQVIDAEHKQRGRG-GAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQL 80 (175)
Q Consensus 2 ~~~~g~~~~V~~~~h~kpGkG-~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi 80 (175)
|+++|+||+|++++|+||||| +|++|+++|||+||+++|++|+|+++++.|++++++|||||.||+.|+|||+|||||+
T Consensus 18 i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~TG~~~e~tf~s~~kve~~~v~~~~~qyly~dg~~~~fMD~etyeq~ 97 (138)
T 3cpf_A 18 VVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVRE 97 (138)
T ss_dssp EEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEETTEEEEECTTSCEEC
T ss_pred EEECCEEEEEEEEEeccCCCCccEEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEEecCCEEEEEcCCCCeEe
Confidence 689999999999999999995 9999999999999999999999999999999999999999999999999999999999
Q ss_pred e--cCchhhhchh-hccCCCCEEEEEEEC
Q 030538 81 E--VPLDVFGKAG-AYLQEGMKVWLQLYD 106 (175)
Q Consensus 81 ~--l~~~~lgd~~-~~L~eg~~v~v~~~~ 106 (175)
. ||.+.+|+++ +||+||++|.|.+|+
T Consensus 98 ~l~l~~~~lgd~~~~~l~eg~~v~V~~~~ 126 (138)
T 3cpf_A 98 DLRLPEGDLGKEIEQKYDCGEEILITVLS 126 (138)
T ss_dssp CSBCCSHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred eecCCHHHHHHHHHHHhhCCCEEEEEEEh
Confidence 9 7999999999 999999999999995
No 9
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=100.00 E-value=2.6e-37 Score=237.97 Aligned_cols=107 Identities=21% Similarity=0.230 Sum_probs=104.1
Q ss_pred eEEcCcEEEEEEeEEecCCC-CCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEeCCCccee
Q 030538 2 TLTTGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQL 80 (175)
Q Consensus 2 ~~~~g~~~~V~~~~h~kpGk-G~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD~etyeqi 80 (175)
|+++|+||+|++++|+|||| |+|++|+|+|||+||+++|++|+++++++.|+++++++||||.||+.|+|||+|||||+
T Consensus 22 I~~~g~p~~V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qyly~dg~~~~fMD~etyeq~ 101 (136)
T 2eif_A 22 VMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLAIMGDMVQIMDLQTYETL 101 (136)
T ss_dssp EEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEECEEEEEEEEEEEETTEEEEEETTTCCEE
T ss_pred EEECCEEEEEEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCCCEeccccEeeeEEEEEEecCCEEEEEeCCCceEE
Confidence 68999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCchhhhchhhccCCCCEEEEEEECCEEEE
Q 030538 81 EVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 111 (175)
Q Consensus 81 ~l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~ 111 (175)
+|+++ ||+.+ |+||++|.+++|.|++.-
T Consensus 102 ~l~~~--gd~~~-l~e~~~v~v~~~~G~~~i 129 (136)
T 2eif_A 102 ELPIP--EGIEG-LEPGGEVEYIEAVGQYKI 129 (136)
T ss_dssp EEECC--SCCTT-CSTTCEEEEEEETTEEEE
T ss_pred EecCC--Cchhh-CCCCCEEEEEEECCEEEE
Confidence 99999 99999 999999999999998653
No 10
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=100.00 E-value=1.6e-35 Score=236.08 Aligned_cols=105 Identities=21% Similarity=0.329 Sum_probs=99.1
Q ss_pred eEEcCcEEEEEEeEEecCCC-CCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCC-------EEEEEe
Q 030538 2 TLTTGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND-------TAFVIE 73 (175)
Q Consensus 2 ~~~~g~~~~V~~~~h~kpGk-G~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd-------~~vFMD 73 (175)
|+++|+||+|++++|+|||| |+|++|+++|||+||+++|++|+++++++.|+|++++|||||.||+ .|+|||
T Consensus 42 I~idG~p~~Vve~~~~KpGKgG~A~vr~k~kni~TG~k~E~tf~s~~kve~~~Ver~~~QyLY~dgd~~~~~~g~~~fMD 121 (174)
T 1x6o_A 42 VCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTHNVEVPFVKTYTYSVLDIQANEDPSLPAHLSLMD 121 (174)
T ss_dssp EEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEECCSSTTSCCEEEEEC
T ss_pred EEECCEEEEEEEEEecCCCCCCceEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEEecCCcccccccEEEEEc
Confidence 78999999999999999999 5999999999999999999999999999999999999999999999 999999
Q ss_pred CCCcceeec--Cch-hhhch-hhccCCCCEEEEEEEC
Q 030538 74 SETFEQLEV--PLD-VFGKA-GAYLQEGMKVWLQLYD 106 (175)
Q Consensus 74 ~etyeqi~l--~~~-~lgd~-~~~L~eg~~v~v~~~~ 106 (175)
+++|||+.| |.+ .||++ .+||+||++|.|.+|.
T Consensus 122 ~etyeq~~l~~p~~~~lgd~i~~~l~eg~~v~V~~~~ 158 (174)
T 1x6o_A 122 DEGESREDLDMPPDPALATQIKEQFDSGKDVLVVVVS 158 (174)
T ss_dssp TTSCEECCCBCCSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCceEEEeeCCchhhHHHHHHHHhhCCCEEEEEEEe
Confidence 999999999 788 89999 8999999999999995
No 11
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-36 Score=238.78 Aligned_cols=105 Identities=16% Similarity=0.284 Sum_probs=102.4
Q ss_pred eEEcCcEEEEEEeEEecCCC-CCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeCCEEEEEe--CCCcc
Q 030538 2 TLTTGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIE--SETFE 78 (175)
Q Consensus 2 ~~~~g~~~~V~~~~h~kpGk-G~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dgd~~vFMD--~etye 78 (175)
|+++|+||+|++++|+|||| |+|++|+++|||+||+++|++|+|+++++.|++++++|||||.||+.|+||| .+|||
T Consensus 42 I~idG~p~~Vve~~~~KpGKHG~A~vr~k~knl~TG~k~E~tf~s~~kve~~~ver~~~QyLY~dg~~~~FMD~~~etye 121 (167)
T 3er0_A 42 VVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDIDDGFLSLMNMDGDTKD 121 (167)
T ss_dssp EEETTEEEEEEEEEEECCSSSSCCEEEEEEEESSSCCCEEEEEESSSEEEECCCCEEEEECCCCTTTTCCCCCSSSCCCS
T ss_pred EEECCEEEEEEEEEEeCCCCcCceEEEEEEEEcCCCCEEEEEEcCCCccccceEEEeeEEEEEEcCCEEEEEeCCCCeeE
Confidence 78999999999999999999 9999999999999999999999999999999999999999999999999999 89999
Q ss_pred eeecCchhhhchh-hccCCCCEEEEEEEC
Q 030538 79 QLEVPLDVFGKAG-AYLQEGMKVWLQLYD 106 (175)
Q Consensus 79 qi~l~~~~lgd~~-~~L~eg~~v~v~~~~ 106 (175)
|+.||++.||+++ .||+||++|.|++|+
T Consensus 122 qi~l~~~~lgd~i~~~l~eg~~v~V~~~~ 150 (167)
T 3er0_A 122 DVKAPEGELGDSLQTAFDEGKDLMVTIIS 150 (167)
T ss_dssp CCCCCCSSHHHHHHHTTSSCCCCEEEEEE
T ss_pred EEEcCHHHHHHHHHHHhhCCCEEEEEEEh
Confidence 9999999999998 789999999999995
No 12
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=100.00 E-value=2.4e-34 Score=227.94 Aligned_cols=105 Identities=12% Similarity=0.154 Sum_probs=99.2
Q ss_pred eEEcCcEEEEEEeEEecCCC-CCcEEEEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEeeC-CEEEEEeCCCcce
Q 030538 2 TLTTGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEN-DTAFVIESETFEQ 79 (175)
Q Consensus 2 ~~~~g~~~~V~~~~h~kpGk-G~A~vr~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~Dg-d~~vFMD~etyeq 79 (175)
|+++|+||+|++++|+|||| |+|++|+++|||+||+++|++|+|+++++.|.|++++|||||.|+ +.|+|||+++|||
T Consensus 40 I~idG~P~~Vve~~~~KpGKhG~A~vr~k~knl~TGk~~E~tf~s~~kve~~~ver~~~QyLY~d~d~~~~fMD~etyeQ 119 (167)
T 3hks_A 40 IVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTK 119 (167)
T ss_dssp EEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEECTTSBEEEECTTSCEE
T ss_pred EEECCEEEEEEEEEEeCCCCCCceEEEEEEEEcCCCCEEEEEEcCCCEEEeeeEEEEEEEEEEECCCCEEEEEcCCCceE
Confidence 78999999999999999999 999999999999999999999999999999999999999999965 6899999999999
Q ss_pred e--ecCch-hhhchh-hccCCCCEEEEEEEC
Q 030538 80 L--EVPLD-VFGKAG-AYLQEGMKVWLQLYD 106 (175)
Q Consensus 80 i--~l~~~-~lgd~~-~~L~eg~~v~v~~~~ 106 (175)
+ .||.+ .|++++ .||++|++|.|.+|+
T Consensus 120 ~~l~lp~~~~lg~~i~~~l~eG~~v~V~v~~ 150 (167)
T 3hks_A 120 DDLKLPTDDGLTAQMRLGFDEGKDIVVSVMS 150 (167)
T ss_dssp CCCBCCSCHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred EEEecCchHHHHHHHHHHhhCCCEEEEEEEe
Confidence 5 66777 899877 999999999999995
No 13
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
Probab=99.33 E-value=1.8e-11 Score=97.17 Aligned_cols=101 Identities=14% Similarity=0.065 Sum_probs=83.8
Q ss_pred eEEcCcEEEEEEeEEe-cCCCCCcEEEEEEEECCCCCeEEEEeCCC--------CcEEeeeEEeeEEEEEEeeCCEEEEE
Q 030538 2 TLTTGKMYQVIDAEHK-QRGRGGAMMQMELRDIDTGNKVSLRFGTE--------EAVERVFVEDKSFTCLYTENDTAFVI 72 (175)
Q Consensus 2 ~~~~g~~~~V~~~~h~-kpGkG~A~vr~klknl~TG~~~e~~f~s~--------dkve~~~le~~~~qylY~Dgd~~vFM 72 (175)
++++|+||+|++++.+ ||||- ++...||+||++.|...+++ ++++.+.+. +||.|..++++..+|
T Consensus 46 v~IkGrPCKIveiStS~KtGKH----~ivaiDIFTgkK~edi~Pss~p~p~~~~hnm~VPvVk--~yQlldI~dg~lsLM 119 (176)
T 1khi_A 46 LILQGRPCQVIRISTSAATGQH----RYLGVDLFTKQLHEESSFVSNPAPSVVVQTMLGPVFK--QYRVLDMQDGSIVAM 119 (176)
T ss_dssp EEETTEEEEEEEEEECTTTCCE----EEEEEETTTCCEEEEECCEECSSTTCCEEEEEEECCE--EEEEEEEETTEEEEE
T ss_pred EEECCeeeEEEEEEccCCCCce----EEEEEEccCCcEeEEeccccCCCcccccceeccceeE--EEEEEEEcCCeEEEE
Confidence 7899999999999999 89998 89999999999999999988 899999996 999999999999999
Q ss_pred eCCCcc--eeecCc-hhhhchh-hccCCCCE---EEEEEECCE
Q 030538 73 ESETFE--QLEVPL-DVFGKAG-AYLQEGMK---VWLQLYDGR 108 (175)
Q Consensus 73 D~etye--qi~l~~-~~lgd~~-~~L~eg~~---v~v~~~~~~ 108 (175)
|.+.|+ ++.+|. ..|+..+ ..+.+|.+ |.++-.-|+
T Consensus 120 d~~G~~k~dl~lp~~~~l~~~i~~~f~~G~~~~~V~v~~amG~ 162 (176)
T 1khi_A 120 TETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGR 162 (176)
T ss_dssp CTTCCEEEEEEBCCSTTHHHHHHHHHTTTGGGEEEEEEEETTE
T ss_pred eCCCCEEeeeEccchHHHHHHHHHHhhCCCceEEEEEEeECCc
Confidence 998765 555564 3355444 45678866 555555564
No 14
>4a1y_A Myelin P2 protein; transport; HET: PLM; 1.20A {Homo sapiens} PDB: 2wut_A* 4a1h_A* 1pmp_A* 1yiv_A*
Probab=66.82 E-value=9.1 Score=28.16 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=37.8
Q ss_pred EEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEe-eCCEEEEE
Q 030538 27 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFVI 72 (175)
Q Consensus 27 r~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~-Dgd~~vFM 72 (175)
++.++...+.+..+.+|+-|+.++.-.++.+.++-++. ||+.++..
T Consensus 50 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~~ 96 (133)
T 4a1y_A 50 IITIRTESTFKNTEISFQLGQEFEETTADNRKTKSIVTLQRGSLNQV 96 (133)
T ss_dssp EEEEEEEETTEEEEEEECTTBCEEEECTTCCEEEEEEEEETTEEEEE
T ss_pred EEEEEEecCCccEEEEEEcCCcEEEEcCCCCEEEEEEEEcCCEEEEE
Confidence 35566777889999999999999999999999987776 78876543
No 15
>3ppt_A Sodium-calcium exchanger; fatty acid transporter, lipid binding proteins, squid nerve, regulatory factor, beta-sandwich, fatty acid; HET: PAM; 1.28A {Loligo pealei} SCOP: b.60.1.0 PDB: 3pp6_A*
Probab=63.11 E-value=16 Score=26.69 Aligned_cols=45 Identities=4% Similarity=0.132 Sum_probs=37.6
Q ss_pred EEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEe-eCCEEEE
Q 030538 27 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 71 (175)
Q Consensus 27 r~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~-Dgd~~vF 71 (175)
++.++...+.+..+.+|+-|+.++.-.++.+.++-.+. ||+.++-
T Consensus 48 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 93 (133)
T 3ppt_A 48 SWSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTTCKIDGNAMIQ 93 (133)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEeCCccEEEEEECCCcEEeEcCCCCEEEEEEEEECCEEEE
Confidence 46678888999999999999999999999888877765 7776654
No 16
>1mvg_A Liver basic fatty acid binding protein; beta-barrel, calycin, ten antiparallel beta strands, helix- turn-helix motif, transport protein; NMR {Gallus gallus} SCOP: b.60.1.2 PDB: 1tvq_A 1tw4_A* 1zry_A 2jn3_A* 2k62_A*
Probab=60.52 E-value=17 Score=26.34 Aligned_cols=45 Identities=11% Similarity=0.201 Sum_probs=38.5
Q ss_pred EEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEe-eCCEEEE
Q 030538 27 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 71 (175)
Q Consensus 27 r~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~-Dgd~~vF 71 (175)
+..++...+.+..+.+|+-|+.++.-.++.|.++-.+. ||+.++.
T Consensus 46 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 91 (125)
T 1mvg_A 46 DFVVTSKTPRQTVTNSFTLGKEADITTMDGKKLKCTVHLANGKLVT 91 (125)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEETTTEEEEEEEEECSSEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEECCCCCEeeEEEEEECCEEEE
Confidence 46777889999999999999999999999998887777 7776655
No 17
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta} SCOP: b.60.1.2
Probab=60.24 E-value=22 Score=25.93 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=38.4
Q ss_pred EEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEe-eCCEEEE
Q 030538 27 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 71 (175)
Q Consensus 27 r~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~-Dgd~~vF 71 (175)
++.++...+.+..+.+|+-|+.++.-.++.|.++-.+. ||+.++.
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 93 (132)
T 1mdc_A 48 SYSNTSTGGGGAKTVSFKSGVEFDDVIGAGDSVKSMYTVDGNVVTH 93 (132)
T ss_dssp EEEEEEESTTCCEEEEECTTCCEEEEETTTEEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceeEEEEeCCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 35777889999999999999999999999998877777 7776665
No 18
>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport, beta barrel, lipid binding protein; HET: PLM; 2.05A {Homo sapiens} SCOP: b.60.1.2 PDB: 1jjj_A
Probab=59.35 E-value=18 Score=26.42 Aligned_cols=45 Identities=7% Similarity=0.104 Sum_probs=38.0
Q ss_pred EEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEe-eCCEEEE
Q 030538 27 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 71 (175)
Q Consensus 27 r~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~-Dgd~~vF 71 (175)
+..++...+.+..+.+|+-|+.++.-.++.|.++-++. ||+.++.
T Consensus 51 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 96 (135)
T 1b56_A 51 NLTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQ 96 (135)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEECCCcEEEECCCCCeEEEEEEEECCEEEE
Confidence 35677889999999999999999999999988877777 7776654
No 19
>1ifc_A Intestinal fatty acid binding protein; lipid-binding protein; 1.19A {Rattus norvegicus} SCOP: b.60.1.2 PDB: 1ael_A 1icm_A* 1ifb_A 1ure_A* 2ifb_A* 3akn_A* 1icn_A* 1t8v_A 1dc9_A 1a57_A 1kzx_A 1kzw_A 3akm_A* 3ifb_A 1sa8_A
Probab=59.35 E-value=18 Score=26.30 Aligned_cols=45 Identities=9% Similarity=0.171 Sum_probs=37.7
Q ss_pred EEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEe-eCCEEEE
Q 030538 27 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 71 (175)
Q Consensus 27 r~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~-Dgd~~vF 71 (175)
+..++...+.+..+.+|+-|+.++.-.++.|.++-++. ||+.++.
T Consensus 47 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 92 (132)
T 1ifc_A 47 KFTVKESSNFRNIDVVFELGVDFAYSLADGTELTGTWTMEGNKLVG 92 (132)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 35777889999999999999999999999888877776 7776554
No 20
>1o8v_A Fatty acid binding protein homolog; lipid binding protein, hydatid disease, fatty-acid transport; HET: PLM; 1.60A {Echinococcus granulosus} SCOP: b.60.1.2
Probab=58.66 E-value=20 Score=26.15 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=37.5
Q ss_pred EEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEe-eCCEEEE
Q 030538 28 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 71 (175)
Q Consensus 28 ~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~-Dgd~~vF 71 (175)
..++...+.+..+.+|+-|+.++.-.++.|.++-++. ||+.++.
T Consensus 51 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1o8v_A 51 YKMRSESTFKTTECSFKLGEKFKEVTPDSREVASLITVENGVMKH 95 (134)
T ss_dssp EEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEcCCceEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 5677889999999999999999999999988877776 7776655
No 21
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=58.07 E-value=2.3 Score=28.89 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=16.7
Q ss_pred EEECCEEEEEeCCCeEEEE
Q 030538 103 QLYDGRALSGSIPKRVACT 121 (175)
Q Consensus 103 ~~~~~~~i~v~lP~~v~l~ 121 (175)
..|+|+|||.+||-.|.+.
T Consensus 40 ~~wkGr~ISanlP~~V~F~ 58 (75)
T 1dj7_B 40 TEWQGRPISANLPVLVKFE 58 (75)
T ss_dssp SEETTEECCCSSCEEEEET
T ss_pred eeccCcEecCCCCEEEEEe
Confidence 4589999999999999883
No 22
>1vyf_A SM14, 14 kDa fatty acid binding protein; transport protein; HET: OLA; 1.85A {Schistosoma mansoni} SCOP: b.60.1.2 PDB: 1vyg_A* 2poa_A
Probab=57.85 E-value=21 Score=26.11 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=36.6
Q ss_pred EEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEe--eCCEEEE
Q 030538 28 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT--ENDTAFV 71 (175)
Q Consensus 28 ~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~--Dgd~~vF 71 (175)
+.++...+.+..+.+|+-|+.++.-.++.|.++-++. ||+.++.
T Consensus 51 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~~eg~kLv~ 96 (135)
T 1vyf_A 51 MTMLTESTFKNLSCTFKFGEEFDEKTSDGRNVKSVVEKNSESKLTQ 96 (135)
T ss_dssp EEEEEECSSCCEEEEECTTCCEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred EEEEEEcCCceEEEEEECCCCEEEECCCCCEEEEEEEEccCCEEEE
Confidence 5677888999999999999999999999888866665 7776655
No 23
>2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides farinae} SCOP: b.60.1.2
Probab=56.51 E-value=26 Score=25.43 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=37.7
Q ss_pred EEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEe-eC-CEEEE
Q 030538 28 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 71 (175)
Q Consensus 28 ~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~-Dg-d~~vF 71 (175)
..++...+.+..+.+|+-|+.++.-.++.|.++-.+. || +.++.
T Consensus 49 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~~kLv~ 94 (131)
T 2a0a_A 49 YIFRSLSTFKNTEAKFKLGEEFEEDRADGKRVKTVIQKEGDNKFVQ 94 (131)
T ss_dssp EEEEECCTTSCEEEEECSSCCEEEEETTTEEEEEEEEEETTTEEEE
T ss_pred EEEEEEcCCeeEEEEEECCCcEEEECCCCCEEEEEEEEeCCCEEEE
Confidence 6777889999999999999999999999888877776 77 66655
No 24
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Probab=55.68 E-value=17 Score=26.38 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=37.7
Q ss_pred EEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEe-eCCEEEE
Q 030538 27 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 71 (175)
Q Consensus 27 r~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~-Dgd~~vF 71 (175)
+..++...+.+..+.+|+-|+.++.-.++.|.++-++. ||+.++.
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~kLv~ 93 (131)
T 1fdq_A 48 KVVIRTLSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVH 93 (131)
T ss_dssp EEEEEEECSSCBCCEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEecCCccEEEEEeCCCceEEECCCCCEEEEEEEEECCEEEE
Confidence 35577888899999999999999999999988877777 7776655
No 25
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast ST genomics consortium, NESG; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=54.28 E-value=36 Score=23.52 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=36.7
Q ss_pred CCCEEEEEEECCEEEEEeCCCe-EEEEEEEeCCCCCCccCCCCceEEEeecccEEEcccc
Q 030538 96 EGMKVWLQLYDGRALSGSIPKR-VACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSY 154 (175)
Q Consensus 96 eg~~v~v~~~~~~~i~v~lP~~-v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~f 154 (175)
.||.|.+. -++.-+++.+|.. ++=.|++.+. ...--..++|+||-+..+|..
T Consensus 20 ~~MKVMIR-~~~~GLs~YVpKKDLEE~VVs~E~------~~~WGG~vtLaNGw~l~lp~l 72 (87)
T 2jn4_A 20 QGMKVMIR-KTATGHSAYVAKKDLEELIVEMEN------PALWGGKVTLANGWQLELPAM 72 (87)
T ss_dssp --CCEEEE-ECSSCEEEEETTTTEEEEEEEESS------SSSCSSEEEETTSCEEECCCC
T ss_pred cCCeEEEE-eCCCceEEEEeCCcchhheeeeec------ccccCcEEEECCccEEEeCCC
Confidence 47999984 4444499999975 6777777662 223356899999999999975
No 26
>3rsw_A Fatty acid-binding protein, heart; lipid carrier, molecular chaperone, heart fatty acid binding type 2 diabetes, atherosclerosis, chaperone; 2.60A {Homo sapiens} PDB: 1g5w_A 1hmr_A* 1hms_A* 1hmt_A* 2hmb_A* 1bwy_A
Probab=53.99 E-value=22 Score=26.97 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=37.1
Q ss_pred EEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEe-eCCEEEE
Q 030538 28 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 71 (175)
Q Consensus 28 ~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~-Dgd~~vF 71 (175)
+.++...+.+..+.+|+-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 75 ~tikt~St~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~eg~kLv~ 119 (158)
T 3rsw_A 75 LTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVH 119 (158)
T ss_dssp EEEEEECSSCEECCEEETTBCEEEECSSCCEEEEEEEESSSEEEE
T ss_pred EEEEEEccCceEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEEE
Confidence 5577889999999999999999999999888887776 7776653
No 27
>4a60_A Fatty acid-binding protein 9 testis lipid-binding protein, TLBP, testis-type fatty...; transport protein; 1.53A {Homo sapiens} PDB: 3nr3_A*
Probab=53.94 E-value=21 Score=27.01 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=37.8
Q ss_pred EEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEe-eCCEEEEE
Q 030538 28 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFVI 72 (175)
Q Consensus 28 ~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~-Dgd~~vFM 72 (175)
+.++...+.+..+.+|+-|+.+|.-.++.|.++-++. ||+.++-.
T Consensus 72 ~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~eg~kLv~~ 117 (154)
T 4a60_A 72 MTIRTESSFQDTKISFKLGEEFDETTADNRKVKSTITLENGSMIHV 117 (154)
T ss_dssp EEEEEEETTEEEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEEE
T ss_pred EEEEEEcCCceEEEEEECCCcEEeEcCCCCEEEEEEEEECCEEEEE
Confidence 6677888899999999999999999999888877776 77776543
No 28
>1ggl_A Protein (cellular retinol-binding protein III); carrier, transport protein; 2.31A {Homo sapiens} SCOP: b.60.1.2
Probab=52.33 E-value=24 Score=25.74 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=37.7
Q ss_pred EEEEEECCCCCeEEEEeCCCCcEEeee--EEeeEEEEEEe-eCCEEEE
Q 030538 27 QMELRDIDTGNKVSLRFGTEEAVERVF--VEDKSFTCLYT-ENDTAFV 71 (175)
Q Consensus 27 r~klknl~TG~~~e~~f~s~dkve~~~--le~~~~qylY~-Dgd~~vF 71 (175)
++.++...+.+..+.+|+-|+.++.-. ++.|.++-++. ||+.++.
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~~~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1ggl_A 48 HMTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVC 95 (134)
T ss_dssp EEEEEEECSSCCEEEEEETTSCEEEEETTTTSEEEEEEEEECSSSEEE
T ss_pred EEEEEEEcCCceEEEEeeCCCcEEEEccCCCCcEeeeEEEEECCEEEE
Confidence 357778899999999999999999999 99888877776 7776655
No 29
>2qo4_A Liver-basic fatty acid binding protein; liver bIle acid-binding protein, BABP, fatty acid-binding PR FABP, cholic acid cholate, bIle acid; HET: CHD; 1.50A {Danio rerio} PDB: 2qo6_A* 2qo5_A* 2ftb_A* 2ft9_A*
Probab=52.32 E-value=16 Score=26.44 Aligned_cols=45 Identities=13% Similarity=0.294 Sum_probs=37.9
Q ss_pred EEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEe-eCCEEEEE
Q 030538 28 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFVI 72 (175)
Q Consensus 28 ~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~-Dgd~~vFM 72 (175)
..++...+.+..+.+|+-|+.++.-.++.|.++-++. ||+.++..
T Consensus 48 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~kLv~~ 93 (126)
T 2qo4_A 48 FTITSKTPGKTVTNSFTIGKEAEITTMDGKKLKCIVKLDGGKLVCR 93 (126)
T ss_dssp EEEEEEETTEEEEEEEETTBEEEEECTTSCEEEEECEEETTEEEEE
T ss_pred EEEEEEcCCceEEEEeeCCCcEEEECCCCCEeEEEEEEECCEEEEE
Confidence 5667778899999999999999999999988887777 77876653
No 30
>3p6d_A Fatty acid-binding protein, adipocyte; lipocalin, beta barrel, lipid BI protein; HET: ZGB; 1.06A {Homo sapiens} SCOP: b.60.1.2 PDB: 3p6c_A* 3p6e_A* 3p6f_A* 3p6g_A* 3p6h_A* 3rzy_A 2hnx_A* 3fr4_A* 2nnq_A* 1tow_A* 1tou_A* 3fr2_A* 3fr5_A* 1adl_A* 1alb_A 1lib_A 1lic_A* 1lid_A* 1lie_A* 1lif_A* ...
Probab=51.93 E-value=31 Score=25.42 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=37.6
Q ss_pred EEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEe-eCCEEEE
Q 030538 27 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 71 (175)
Q Consensus 27 r~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~-Dgd~~vF 71 (175)
++.++...+.+..+.+|+-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 56 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 101 (139)
T 3p6d_A 56 VITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVH 101 (139)
T ss_dssp EEEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEeccccEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEEE
Confidence 36677888899999999999999999999888877776 7777654
No 31
>3q6l_A Fatty acid-binding protein, adipocyte; lipid chaperone, lipid binding protein; 1.40A {Homo sapiens} PDB: 2q9s_A* 2qm9_A*
Probab=51.88 E-value=30 Score=26.00 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=37.8
Q ss_pred EEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEe-eCCEEEE
Q 030538 27 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 71 (175)
Q Consensus 27 r~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~-Dgd~~vF 71 (175)
++.++...+.+..+.+|+-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 69 ~~tikt~st~kt~~~~F~lGeEfee~t~dGrk~Ks~vt~eg~kLv~ 114 (152)
T 3q6l_A 69 VITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVH 114 (152)
T ss_dssp EEEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEeccccEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEEE
Confidence 36677888999999999999999999999888877776 7777654
No 32
>1lpj_A Retinol-binding protein IV, cellular; cellular retinol-binding protein, CRBP, vitamin A, ILBPS, transport protein; 2.00A {Homo sapiens} SCOP: b.60.1.2
Probab=51.66 E-value=27 Score=25.34 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=37.0
Q ss_pred EEEEEECCCCCeEEEEeCCCCcEEeee--EEeeEEEEEEe-eCCEEEE
Q 030538 27 QMELRDIDTGNKVSLRFGTEEAVERVF--VEDKSFTCLYT-ENDTAFV 71 (175)
Q Consensus 27 r~klknl~TG~~~e~~f~s~dkve~~~--le~~~~qylY~-Dgd~~vF 71 (175)
++.++...+.+..+.+|+-|+.++.-. ++.|.++-++. ||+.++.
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeefee~t~~~dgrk~ks~~t~eg~kLv~ 95 (133)
T 1lpj_A 48 SFTIHTNSSLRNYFVKFKVGEEFDEDNRGLDNRKCKSLVIWDNDRLTC 95 (133)
T ss_dssp EEEEEEECSSCCEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEeCCceeEEEeeCCCceEEEccCCCCCEEEEEEEEECCEEEE
Confidence 456778889999999999999999987 88888876666 7776665
No 33
>1ftp_A Muscle fatty acid binding protein; binding protein(fatty acid); 2.20A {Schistocerca gregaria} SCOP: b.60.1.2 PDB: 2flj_A*
Probab=51.14 E-value=28 Score=25.33 Aligned_cols=45 Identities=9% Similarity=0.174 Sum_probs=37.5
Q ss_pred EEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEe-eC-CEEEE
Q 030538 27 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 71 (175)
Q Consensus 27 r~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~-Dg-d~~vF 71 (175)
+..++...+.+..+.+|+-|+.++.-.++.|.++-.+. || +.++.
T Consensus 50 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~~kLv~ 96 (133)
T 1ftp_A 50 KFKLTSKTAIKNTEFTFKLGEEFDEETLDGRKVKSTITQDGPNKLVH 96 (133)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEECSSSEEEE
T ss_pred EEEEEEEcCCeeEEEEEECCCcEEEECCCCCEEEEEEEEeCCCEEEE
Confidence 35677888999999999999999999999888877776 77 66555
No 34
>1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2
Probab=50.90 E-value=15 Score=26.49 Aligned_cols=45 Identities=11% Similarity=0.093 Sum_probs=37.9
Q ss_pred EEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEe-eCCEEEE
Q 030538 27 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 71 (175)
Q Consensus 27 r~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~-Dgd~~vF 71 (175)
+..++...+.+..+.+|+-|+.++.-.++.|.++-++. ||+.++.
T Consensus 46 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 91 (125)
T 1p6p_A 46 EFVVTSKTPKQTHSNSFTVGKESEITSMDGKKIKVTVQLEGGKLIC 91 (125)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEECTTTSCCEEEEEEECSSEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEEcCCCCEEEEEEEEECCEEEE
Confidence 35677888899999999999999999999988887777 7776655
No 35
>2rcq_A CRBP-II, retinol-binding protein II, cellular; cellular retinol binding protein II, lipid-binding protein, X-RAY, cytoplasm, transport, vitamin A; HET: TLA; 1.20A {Homo sapiens} PDB: 2rct_A* 1b4m_A 1eii_A* 1opa_A 1opb_A* 1kqw_A* 1kqx_A
Probab=49.73 E-value=26 Score=25.89 Aligned_cols=45 Identities=13% Similarity=0.216 Sum_probs=37.4
Q ss_pred EEEEEECCCCCeEEEEeCCCCcEEe--eeEEeeEEEEEEe-eCCEEEE
Q 030538 27 QMELRDIDTGNKVSLRFGTEEAVER--VFVEDKSFTCLYT-ENDTAFV 71 (175)
Q Consensus 27 r~klknl~TG~~~e~~f~s~dkve~--~~le~~~~qylY~-Dgd~~vF 71 (175)
++.++...+.+..+.+|+-|+.++. -.++.+.++-++. ||+.++.
T Consensus 52 ~~tikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~vt~eg~kLv~ 99 (141)
T 2rcq_A 52 NFKTKTTSTFRNYDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVC 99 (141)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCeEEeeeecCCCCEEEEEEEEeCCEEEE
Confidence 3557788999999999999999999 8888888877666 7776665
No 36
>1crb_A Cellular retinol binding protein; cellular lipophilic transport protein; HET: RTL; 2.10A {Rattus rattus} SCOP: b.60.1.2 PDB: 1mx7_A 1mx8_A* 1jbh_A 1kgl_A*
Probab=49.62 E-value=23 Score=25.79 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=37.5
Q ss_pred EEEEEECCCCCeEEEEeCCCCcEEe--eeEEeeEEEEEEe-eCCEEEE
Q 030538 27 QMELRDIDTGNKVSLRFGTEEAVER--VFVEDKSFTCLYT-ENDTAFV 71 (175)
Q Consensus 27 r~klknl~TG~~~e~~f~s~dkve~--~~le~~~~qylY~-Dgd~~vF 71 (175)
+..++...+.+..+.+|+-|+.++. -.++.|.++-++. ||+.++.
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1crb_A 48 HMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWDGDKLQC 95 (134)
T ss_dssp EEEEEEECSSCCEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEecCCceEEEEEeCCCeeeeeeecCCCCEEEEEEEEECCEEEE
Confidence 3567788999999999999999999 8888888877766 7776665
No 37
>2f73_A L-FABP, fatty acid-binding protein, liver; structural genomics, structural genomics consortium, SGC, lipid binding protein; 2.50A {Homo sapiens} SCOP: b.60.1.2
Probab=46.56 E-value=25 Score=26.31 Aligned_cols=45 Identities=9% Similarity=0.111 Sum_probs=37.9
Q ss_pred EEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEe-eC-CEEEE
Q 030538 27 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 71 (175)
Q Consensus 27 r~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~-Dg-d~~vF 71 (175)
++.++...+.+..+.+|+-|+.++.-.++.|.++-.+. || +.++.
T Consensus 69 ~~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~egd~kLv~ 115 (149)
T 2f73_A 69 HFKFTITAGSKVIQNEFTVGEECELETMTGEKVKTVVQLEGDNKLVT 115 (149)
T ss_dssp EEEEEEEETTEEEEEEEETTSEEEEECSSSCEEEEECEEETTTEEEE
T ss_pred EEEEEEEeCCeEEEEEEeCCCcEEEEcCCCCEEEEEEEEeCCCcEEE
Confidence 35677888899999999999999999999998887777 77 66655
No 38
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=45.77 E-value=11 Score=30.84 Aligned_cols=35 Identities=6% Similarity=0.116 Sum_probs=28.9
Q ss_pred ceEEEeecccEEEcc----cceeCCCEEEEECCCCceee
Q 030538 138 YRRALLDNGVTVMVP----SYLEIGEEIFINPQDDSYIG 172 (175)
Q Consensus 138 ~K~A~letG~~v~VP----~fI~~Gd~I~V~T~~g~Y~~ 172 (175)
-=...+..|..|..| +-|+++|.|+||.++++=.+
T Consensus 137 ~~~l~~hDgr~i~~p~~~d~~ik~~Dtv~idl~~~kI~d 175 (243)
T 3j20_E 137 RVQLNFHDGTNHIVSIAEKDNYFTSYTVLMKVPEREILE 175 (243)
T ss_dssp EEEECCSSCCCEECSSSSCSSCSSCEEEEEETTTTEEEE
T ss_pred eeEEEecCCceEEcccccCCCcccCCEEEEECCCCCeee
Confidence 335788899999997 68999999999999987543
No 39
>1eal_A Gastrotropin, ileal lipid binding protein; intracellular lipid binding protein, bIle acid binding, ileal epithelium, fatty acid binding protein; NMR {Sus scrofa} SCOP: b.60.1.2 PDB: 1eio_A* 1o1u_A 1o1v_A*
Probab=45.50 E-value=27 Score=25.18 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=36.6
Q ss_pred EEEEEC-CCCCeEEEEeCCCCcEEeeeEEeeEEEEEEe-eCCEEEE
Q 030538 28 MELRDI-DTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 71 (175)
Q Consensus 28 ~klknl-~TG~~~e~~f~s~dkve~~~le~~~~qylY~-Dgd~~vF 71 (175)
..++.. .+.+..+.+|+-|+.++.-.++.|.++-++. ||+.++.
T Consensus 47 ~~ikt~~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 92 (127)
T 1eal_A 47 FTWSQQYPGGHSITNTFTIGKECDIETIGGKKFKATVQMEGGKVVV 92 (127)
T ss_dssp EEEEEECSSSCEEEEEEESSSCEEEECSSSCEEEECCEECSSEEEE
T ss_pred EEEEEEECCCceEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 556677 7888999999999999999999998887777 7776655
No 40
>2lba_A BABP protein; ileal bIle acid binding protein, lipid binding protein; HET: CHO; NMR {Gallus gallus}
Probab=45.27 E-value=26 Score=25.68 Aligned_cols=46 Identities=9% Similarity=0.138 Sum_probs=37.7
Q ss_pred EEEEEEC-CCCCeEEEEeCCCCcEEeeeEEeeEEEEEEe-eCCEEEEE
Q 030538 27 QMELRDI-DTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFVI 72 (175)
Q Consensus 27 r~klknl-~TG~~~e~~f~s~dkve~~~le~~~~qylY~-Dgd~~vFM 72 (175)
++.++.. .+.+..+.+|+-|+.++.-.++.+.++-++. ||+.++..
T Consensus 51 ~~tikt~~s~~kt~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~~ 98 (136)
T 2lba_A 51 DFTWTQHFPGGRTTTNSFTIDKEADMETMGGRKFKATVKMEGGKIVAD 98 (136)
T ss_dssp EEEEEEECTTSCCEEEEEETTEEEEEECTTCCEEEEEEEESSSCEEEE
T ss_pred EEEEEEEeCCCceEEEEEeCCCcEEEECCCCCEeeEEEEEECCEEEEE
Confidence 3556777 8888999999999999999999988887777 77766553
No 41
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=43.89 E-value=32 Score=21.75 Aligned_cols=34 Identities=9% Similarity=0.204 Sum_probs=26.0
Q ss_pred CCcceeecCchhhhchhhccCCCCEEEEEEECCEEE
Q 030538 75 ETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRAL 110 (175)
Q Consensus 75 etyeqi~l~~~~lgd~~~~L~eg~~v~v~~~~~~~i 110 (175)
.+--|+.||+++.. .-=|++|+.+.+...+|.++
T Consensus 19 ~~kGqItIPkeiR~--~Lgi~~Gd~l~i~~~~~~Ii 52 (59)
T 1yfb_A 19 DELGRVVIPIELRR--TLGIAEKDALEIYVDDEKII 52 (59)
T ss_dssp CTTCEEECCHHHHH--HTTCCTTCEEEEEEETTEEE
T ss_pred CCCCEEEeCHHHHH--HcCCCCCCEEEEEEECCEEE
Confidence 45669999998753 33569999999998888643
No 42
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=41.81 E-value=38 Score=27.12 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=25.1
Q ss_pred EEEeecccEEEcc-cceeCCCEEEEECCCCceee
Q 030538 140 RALLDNGVTVMVP-SYLEIGEEIFINPQDDSYIG 172 (175)
Q Consensus 140 ~A~letG~~v~VP-~fI~~Gd~I~V~T~~g~Y~~ 172 (175)
...+..|..|..| +-|++||.|+||.++++=.+
T Consensus 102 ~l~~HDGrti~~pd~~ik~~Dtv~idl~~~kI~d 135 (213)
T 3kbg_A 102 QLGTHDGRTFITDDKSIKVGDVLAVSVPDMKISE 135 (213)
T ss_dssp EEEETTSCEEEECCTTCCTTCEEEEETTTCCEEE
T ss_pred EEEecCccEEEcCCCCcccCCEEEEECCCCceee
Confidence 5677788888885 46888888888888887443
No 43
>2g7b_A Cellular retinoic acid-binding protein 2; crabpii, retinoids, beta barrel, crystallography, X-RAY, high resolution, schiff base; HET: AZE; 1.18A {Homo sapiens} PDB: 3d97_A* 3fa8_A 3i17_B 3fa7_A* 3fa9_A 3d95_A 3cwk_A 3f8a_A* 3fep_A* 3fek_B 3fa6_A 1bm5_A 1xca_A 3fel_A* 3f9d_A* 3cr6_A* 3fen_A 1blr_A 1cbq_A* 1cbs_A* ...
Probab=41.80 E-value=31 Score=25.17 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=36.4
Q ss_pred EEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEe-eC-CEEEE
Q 030538 27 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 71 (175)
Q Consensus 27 r~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~-Dg-d~~vF 71 (175)
++.++...+.+..+.+|+-|+.++.-.++.|.++-++. || +.++.
T Consensus 49 ~~tikt~s~~kt~~~~F~lGeEfee~t~dgrk~ks~~t~egd~kLv~ 95 (137)
T 2g7b_A 49 TFYIKTSTTVRTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVC 95 (137)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred EEEEEEEECCeEEEEEEecCCceEEECCCCCEEEEEEEEeCCCeEEE
Confidence 35677778899999999999999999999888877766 66 55554
No 44
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=40.13 E-value=31 Score=28.57 Aligned_cols=72 Identities=18% Similarity=0.274 Sum_probs=44.2
Q ss_pred CCCCEEEEEEEC-CEEEEEeCCC----eEEEEEEEeCCCCCCccCCCCceEEEeecccEEEccc-ceeCCCEEEEECCCC
Q 030538 95 QEGMKVWLQLYD-GRALSGSIPK----RVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPS-YLEIGEEIFINPQDD 168 (175)
Q Consensus 95 ~eg~~v~v~~~~-~~~i~v~lP~----~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~-fI~~Gd~I~V~T~~g 168 (175)
+-|....+++.. |...-..++. .=-++|....-+-+| -=...+..|..|..|- -|+++|.|+||.+++
T Consensus 94 kt~e~fRll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~~~G------~pql~tHDGrti~~~dp~ik~~DTv~idl~~~ 167 (265)
T 3iz6_D 94 KTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKG------IPYLNTYDGRTIRYPDPIIKANDTIKIDLETN 167 (265)
T ss_dssp SSCCEEEEEECTTSCEEEEEECHHHHTCEEEEEEEEECCSSS------CCEEEETTSCCCBSCSSCCCTTCEEEECSSSC
T ss_pred CCCCEEEEEECCCCcEEEEECChHHcceEEEEEEEEEEccCC------ceEEEeecceEEecCCCCcccCCEEEEECCCC
Confidence 344555555443 3333333332 123555555444344 3367888999998874 799999999999988
Q ss_pred ceee
Q 030538 169 SYIG 172 (175)
Q Consensus 169 ~Y~~ 172 (175)
+=++
T Consensus 168 kI~d 171 (265)
T 3iz6_D 168 KIVD 171 (265)
T ss_dssp CEEE
T ss_pred ceee
Confidence 7543
No 45
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=39.85 E-value=37 Score=23.96 Aligned_cols=50 Identities=18% Similarity=0.342 Sum_probs=33.9
Q ss_pred EEEEeCCC----eEEEEEEEeCCCCCCccCCCCceEEEeecccEEEc--c------cceeCCCEEEEECC
Q 030538 109 ALSGSIPK----RVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMV--P------SYLEIGEEIFINPQ 166 (175)
Q Consensus 109 ~i~v~lP~----~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~V--P------~fI~~Gd~I~V~T~ 166 (175)
...+.+|. .+.-+|+++-| |..=.+.|++|.++.+ | ..|..||+|.|...
T Consensus 9 ~~~~~~P~~~e~e~~g~V~~~lg--------n~~~~V~l~nG~~~la~i~GKmRk~IwI~~GD~VlVe~~ 70 (102)
T 1jt8_A 9 QIRVRIPRKEENEILGIIEQMLG--------ASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPW 70 (102)
T ss_dssp CCCCCCSCCSSCCEEEEEECSSC--------SSEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECCB
T ss_pred ceecccCCCCCCEEEEEEEEEcC--------CCEEEEEECCCCEEEEEEcccceeeEEecCCCEEEEEec
Confidence 33456665 45556666655 3466788999988743 2 46899999999754
No 46
>3vg7_A Fatty acid-binding protein, liver; lfabp, S-SAD, copper kalpha, palmitic acid, lipid binding PR; HET: PLM; 1.44A {Homo sapiens} PDB: 3b2i_A* 3b2j_A* 3b2k_A* 3b2l_A* 3stk_A* 3stm_X* 3stn_A 3vg2_A* 3vg3_A* 3vg4_A* 3vg5_A* 3vg6_A* 3b2h_A* 2py1_A 2l67_A 2l68_A 2lkk_A* 2ju3_A 2ju7_A 2ju8_A* ...
Probab=36.03 E-value=38 Score=24.64 Aligned_cols=46 Identities=9% Similarity=0.104 Sum_probs=37.3
Q ss_pred EEEEEECCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEe-eC-CEEEEE
Q 030538 27 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFVI 72 (175)
Q Consensus 27 r~klknl~TG~~~e~~f~s~dkve~~~le~~~~qylY~-Dg-d~~vFM 72 (175)
++.++...+.+..+.+|+-|+.++.-.++.|.++-++. || +.++-.
T Consensus 50 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~egd~kLv~~ 97 (132)
T 3vg7_A 50 HFKFTITAGSKVIQNEFTVGEECELETMTGEKVKTVVQLEGDNKLVTT 97 (132)
T ss_dssp EEEEEEEETTEEEEEEEETTSEEEEECTTSCEEEEECEESSTTEEEEE
T ss_pred EEEEEEEEcCceEEEEEECCCcEEeECCCCCEEEEEEEEecCCeEEEE
Confidence 35567778899999999999999999999988887776 66 566543
No 47
>3elx_A Ileal bIle acid-binding protein; ileal bIle acid-bindign protein, zebrafish, cholic acid, LIP binding, transport, lipid binding protein; 1.60A {Danio rerio} SCOP: b.60.1.0 PDB: 3elz_A* 3em0_A*
Probab=35.81 E-value=26 Score=25.87 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=37.7
Q ss_pred EEEEEECCC-CCeEEEEeCCCCcEEeeeEEeeEEEEEEe-eCCEEEE
Q 030538 27 QMELRDIDT-GNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 71 (175)
Q Consensus 27 r~klknl~T-G~~~e~~f~s~dkve~~~le~~~~qylY~-Dgd~~vF 71 (175)
++.++...+ .+..+.+|+-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 50 ~~tikt~s~~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 96 (138)
T 3elx_A 50 DFTWTQYYPNNHVVTNKFIVGKESDMETVGGKKFKGIVSMEGGKLTI 96 (138)
T ss_dssp EEEEEEEEGGGEEEEEEEETTSCEEEECTTSCEEEECCEEETTEEEE
T ss_pred EEEEEEEEcCCceEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEEE
Confidence 466778888 89999999999999999999988887776 7777664
No 48
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=35.57 E-value=37 Score=28.01 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=25.3
Q ss_pred ceEEEeecccEEEcc-cceeCCCEEEEECCCCce
Q 030538 138 YRRALLDNGVTVMVP-SYLEIGEEIFINPQDDSY 170 (175)
Q Consensus 138 ~K~A~letG~~v~VP-~fI~~Gd~I~V~T~~g~Y 170 (175)
-=...+..|..|..| +-|+.||.|+||.++++=
T Consensus 138 ~~ql~~HDGrti~~~d~~ik~~Dtv~idl~~~kI 171 (260)
T 2xzm_W 138 IPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKI 171 (260)
T ss_dssp EEEEEETTTEEEESCCSSCCTTBEEEEETTTTEE
T ss_pred ceEEEecCCceEeccCCcCccCCeEEEeCCCCce
Confidence 346677788888876 467888888888888763
No 49
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=33.15 E-value=48 Score=21.87 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=24.5
Q ss_pred CCCcceeecCchhhhchhhccCCCCEEEEEEE--CCEEE
Q 030538 74 SETFEQLEVPLDVFGKAGAYLQEGMKVWLQLY--DGRAL 110 (175)
Q Consensus 74 ~etyeqi~l~~~~lgd~~~~L~eg~~v~v~~~--~~~~i 110 (175)
.++| |+.+|.+... ++ =|++|+++.+... +|+++
T Consensus 22 ~ety-YInIPaeI~k-aL-gIk~gD~fel~ve~kdgeIv 57 (68)
T 3o27_A 22 HTTF-YLLIPKDIAE-AL-DIKPDDTFILNMEQKDGDIV 57 (68)
T ss_dssp CCCE-EEEECHHHHH-HT-TCCTTCCEEEEEEEETTEEE
T ss_pred ceEE-EEeCcHHHHH-Hh-CCCCCCEEEEEEecCCCeEE
Confidence 4778 8999998753 33 4688888877776 77664
No 50
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=32.99 E-value=35 Score=28.21 Aligned_cols=35 Identities=11% Similarity=0.255 Sum_probs=28.2
Q ss_pred ceEEEeecccEEEccc-ceeCCCEEEEECCCCceee
Q 030538 138 YRRALLDNGVTVMVPS-YLEIGEEIFINPQDDSYIG 172 (175)
Q Consensus 138 ~K~A~letG~~v~VP~-fI~~Gd~I~V~T~~g~Y~~ 172 (175)
-=...+..|..|..|- -|+++|.|+||.++++=.+
T Consensus 136 ~pql~tHDGrti~~~dp~ik~~Dtv~idl~~~kI~d 171 (261)
T 3u5c_E 136 VPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITD 171 (261)
T ss_dssp CEEEEETTTEEEESCCSSCCTTCEEEECSSSSCEEE
T ss_pred ceEEEEecceEEecCCCCcccCCEEEEECCCCceee
Confidence 3367888999998875 7999999999999987543
No 51
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=32.62 E-value=24 Score=25.96 Aligned_cols=21 Identities=14% Similarity=0.127 Sum_probs=17.7
Q ss_pred ceeCCCEEEEECCCCceeeec
Q 030538 154 YLEIGEEIFINPQDDSYIGRA 174 (175)
Q Consensus 154 fI~~Gd~I~V~T~~g~Y~~R~ 174 (175)
=|+.||.|+|.++.|+-.-||
T Consensus 66 GI~dGd~V~V~s~~G~v~~~a 86 (146)
T 2ki8_A 66 GLQEGDRVKVKTEFGEVVVFA 86 (146)
T ss_dssp TCCTTCEEEEECSSCEEEEEE
T ss_pred CCCCCCEEEEEeCCcEEEEEE
Confidence 467899999999999877665
No 52
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=30.19 E-value=56 Score=21.38 Aligned_cols=44 Identities=23% Similarity=0.390 Sum_probs=28.3
Q ss_pred cEEEEEEEECCCCCeEEEEeCCCCcEEeee--EEeeEEEEEEeeCCEEEEEe
Q 030538 24 AMMQMELRDIDTGNKVSLRFGTEEAVERVF--VEDKSFTCLYTENDTAFVIE 73 (175)
Q Consensus 24 A~vr~klknl~TG~~~e~~f~s~dkve~~~--le~~~~qylY~Dgd~~vFMD 73 (175)
..+++.+| +-+|+.+..+|++++++..+. ++...+ ++..|.|+-
T Consensus 6 ~~~~i~iR-lpdG~r~~~~F~~~~tl~~v~~fv~~~~~-----~~~~f~L~t 51 (84)
T 3qx1_A 6 PVSKLRIR-TPSGEFLERRFLASNKLQIVFDFVASKGF-----PWDEYKLLS 51 (84)
T ss_dssp CEEEEEEE-CTTSCEEEEEEETTSBHHHHHHHHHHTTC-----CTTTEEEEC
T ss_pred CeEEEEEE-CCCCCEEEEEeCCCCCHHHHHHHHHHcCC-----CCCCeEEEe
Confidence 34555555 578999999999999996421 222111 455677774
No 53
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=29.78 E-value=46 Score=22.49 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=19.0
Q ss_pred CCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCC
Q 030538 95 QEGMKVWLQLYDGRALSGSIPKRVACTIKEIHAS 128 (175)
Q Consensus 95 ~eg~~v~v~~~~~~~i~v~lP~~v~l~V~~t~p~ 128 (175)
..|+.+.+.++. ..+.|.|++|+|+
T Consensus 43 ~~GD~I~i~~~G---------~~i~F~Vv~t~P~ 67 (83)
T 2jv2_A 43 RTGDVIGISILG---------KEVKFKVVQAYPS 67 (83)
T ss_dssp CTTCEEEEEETT---------EEEEEEEEEEESS
T ss_pred cCCCEEEEeeCC---------CEEEEEEEEecCc
Confidence 677777766533 7888999999993
No 54
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.67 E-value=1.3e+02 Score=21.41 Aligned_cols=29 Identities=14% Similarity=0.367 Sum_probs=19.0
Q ss_pred ceEEEeecccEEEc--------ccceeCCCEEEEECC
Q 030538 138 YRRALLDNGVTVMV--------PSYLEIGEEIFINPQ 166 (175)
Q Consensus 138 ~K~A~letG~~v~V--------P~fI~~Gd~I~V~T~ 166 (175)
.=.+.|++|.++.+ =..|..||+|.|...
T Consensus 29 ~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~~ 65 (111)
T 2dgy_A 29 LHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPI 65 (111)
T ss_dssp EEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEEC
T ss_pred EEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEec
Confidence 34555566655432 246889999999865
No 55
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=29.06 E-value=25 Score=25.43 Aligned_cols=31 Identities=10% Similarity=0.092 Sum_probs=23.9
Q ss_pred EeecccEE--EcccceeCCCEEEEECCCCceee
Q 030538 142 LLDNGVTV--MVPSYLEIGEEIFINPQDDSYIG 172 (175)
Q Consensus 142 ~letG~~v--~VP~fI~~Gd~I~V~T~~g~Y~~ 172 (175)
|.=||..| ..|.-++.||.|++=..+.+|+=
T Consensus 96 T~vNg~ri~~~~~~~L~~GD~I~~G~str~yvl 128 (130)
T 4h87_A 96 TFLNKTRIPPRTYCRVHVGHVVRFGGSTRLFIL 128 (130)
T ss_dssp EEETTEECCTTCCEECCTTCEEEETTCSEEEEE
T ss_pred eEECCEECCCCceeECCCCCEEEECCceEEEEE
Confidence 34477777 45677899999999888888874
No 56
>3bk5_A Putative outer membrane lipoprotein-sorting prote; putative outer membrane protein domain, PSI-2, protein struc initiative; HET: MSE; 2.00A {Vibrio parahaemolyticus rimd 2210633}
Probab=25.55 E-value=1.3e+02 Score=22.95 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=27.9
Q ss_pred cCcEEEEEEeEEecCCCC-CcE-EEEEEEECCCCCeEEEEeC
Q 030538 5 TGKMYQVIDAEHKQRGRG-GAM-MQMELRDIDTGNKVSLRFG 44 (175)
Q Consensus 5 ~g~~~~V~~~~h~kpGkG-~A~-vr~klknl~TG~~~e~~f~ 44 (175)
+|++++.+.+...+..-| ... .++.+.||.+|....-.+.
T Consensus 176 ~G~l~~~~~~~~~~~~~g~~~~~~~~~~~dl~~g~~t~~~~~ 217 (237)
T 3bk5_A 176 KGALLKTLTFANYKQYLDKYWRAHTMAMTNHQTGKSTELNTS 217 (237)
T ss_dssp TSCEEEEEEEEEEEEETTTEEEEEEEEEEETTTCCEEEEEEE
T ss_pred CCCEEEEEEEeeeEEEcceEEEEEEEEEEECCCCCEEEEEEe
Confidence 678888887776665445 222 2788889888888766664
No 57
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=24.95 E-value=65 Score=21.50 Aligned_cols=32 Identities=9% Similarity=0.323 Sum_probs=26.1
Q ss_pred CCCCCcEEEEEEE--ECCCCCeEEEEeCCCCcEE
Q 030538 19 RGRGGAMMQMELR--DIDTGNKVSLRFGTEEAVE 50 (175)
Q Consensus 19 pGkG~A~vr~klk--nl~TG~~~e~~f~s~dkve 50 (175)
.|++...+++.++ +..+|..++.+|+.+..+.
T Consensus 3 ~~~~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~ 36 (97)
T 1wjn_A 3 SGSSGQLLTLKIKCSNQPERQILEKQLPDSMTVQ 36 (97)
T ss_dssp CCSSSCEEEEEEEESSCSSSCCEEEEEETTSBHH
T ss_pred ccccCccEEEEEEecCCCCCcEEEEECCCCCCHH
Confidence 3567778888887 5689999999999888774
No 58
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=24.71 E-value=75 Score=20.70 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=23.6
Q ss_pred ceeecCchhhhchhhccCCCCEEEEEEECCEEE
Q 030538 78 EQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRAL 110 (175)
Q Consensus 78 eqi~l~~~~lgd~~~~L~eg~~v~v~~~~~~~i 110 (175)
-|+.||++... .-=|.+|.+|.+...+|.++
T Consensus 13 ~~v~iPk~~~~--~lgl~~gd~v~i~~~~~~ii 43 (82)
T 1mvf_D 13 PAVRIPATLMQ--ALNLNIDDEVKIDLVDGKLI 43 (82)
T ss_dssp EEEECCHHHHH--HTTCCTTCBEEEEEETTEEE
T ss_pred cEEEECHHHHH--HcCCCCCCEEEEEEECCEEE
Confidence 48999998764 22458899999988888754
No 59
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=24.59 E-value=92 Score=22.83 Aligned_cols=93 Identities=16% Similarity=0.301 Sum_probs=46.8
Q ss_pred CCCCcEEEEEEEECCCCCeEEEEeCCCCcEEee--eEEe-----eEEEEEEeeCCEEEEEeCCCcceeecCchhhhchhh
Q 030538 20 GRGGAMMQMELRDIDTGNKVSLRFGTEEAVERV--FVED-----KSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGA 92 (175)
Q Consensus 20 GkG~A~vr~klknl~TG~~~e~~f~s~dkve~~--~le~-----~~~qylY~Dgd~~vFMD~etyeqi~l~~~~lgd~~~ 92 (175)
.-....+++.+|.+ +|+.+.-....++.+..+ .|+. .+-|-|+..|. .+-|..+..++.|.....=...-
T Consensus 15 ~~~~~~m~i~Vk~~-~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~--~L~d~~tL~~~~i~~~~~l~l~~ 91 (172)
T 3u30_A 15 VPRGSHMQIFVKTL-TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK--QLEDGRTLSDYNIQKESTLHLVL 91 (172)
T ss_dssp ----CCEEEEEEET-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTE--ECCTTCBTGGGTCCTTCEEEEEE
T ss_pred CCCCCcEEEEEEeC-CCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCc--cccccCCHhHcCCcccceeeeee
Confidence 34556788888884 788888888888877541 1111 11244444552 33444455555554322111111
Q ss_pred ccCCCCEEEEEEECCEEEEEeCC
Q 030538 93 YLQEGMKVWLQLYDGRALSGSIP 115 (175)
Q Consensus 93 ~L~eg~~v~v~~~~~~~i~v~lP 115 (175)
-+..|+.+.+...+|+.+.++++
T Consensus 92 ~~~gg~~i~Vk~~~g~~~~l~v~ 114 (172)
T 3u30_A 92 RLRGGMQIFVKTLTGKTITLEVE 114 (172)
T ss_dssp CCCCCEEEEEEESSCCEEEEEEC
T ss_pred cccccccceeecccCcceeEEec
Confidence 23445555555556655544443
No 60
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=22.97 E-value=80 Score=20.76 Aligned_cols=51 Identities=18% Similarity=0.117 Sum_probs=30.6
Q ss_pred eCCEEEEEeCCC-cceeecCchhhhch-----hhccCCCCEEEEEEECC----EEEEEeCC
Q 030538 65 ENDTAFVIESET-FEQLEVPLDVFGKA-----GAYLQEGMKVWLQLYDG----RALSGSIP 115 (175)
Q Consensus 65 Dgd~~vFMD~et-yeqi~l~~~~lgd~-----~~~L~eg~~v~v~~~~~----~~i~v~lP 115 (175)
+...|=|..++. =+++-+..+.|... ..-|.+|+.|.....++ ++..|.+|
T Consensus 18 ~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~~~kG~~A~~V~~p 78 (79)
T 1h95_A 18 VRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP 78 (79)
T ss_dssp TTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEECSSSEEEESBCCC
T ss_pred CCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEECCCCceeEEEECc
Confidence 334555555543 35666666666542 56789999998876643 34444444
No 61
>1mhx_A Immunoglobulin-binding protein G; alpha-beta protein, redesigned first beta-hairpin, immune SY; 1.80A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1mi0_A
Probab=22.92 E-value=31 Score=22.12 Aligned_cols=15 Identities=13% Similarity=0.472 Sum_probs=12.6
Q ss_pred ccceeCCCEEEEECC
Q 030538 152 PSYLEIGEEIFINPQ 166 (175)
Q Consensus 152 P~fI~~Gd~I~V~T~ 166 (175)
.+||-.||++.|.|.
T Consensus 13 klfivigdrvvvt~t 27 (65)
T 1mhx_A 13 KLFIVIGDRVVVVTT 27 (65)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred eEEEEEcCEEEEEEe
Confidence 479999999998764
No 62
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=22.90 E-value=84 Score=23.93 Aligned_cols=27 Identities=7% Similarity=0.149 Sum_probs=21.2
Q ss_pred CeEEEEEEEeCCCCCCccCCCCceEEEeecccEEEc
Q 030538 116 KRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMV 151 (175)
Q Consensus 116 ~~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~V 151 (175)
..+.|+|+.+.|. ...|.+.++.+|.|
T Consensus 149 ~~i~f~V~~~~P~---------~~~v~It~~TeI~v 175 (179)
T 1wlf_A 149 TYIFIQIVTLMPA---------APYGRLETNTKLLI 175 (179)
T ss_dssp CEEEEEEEEEESC---------CSSEECCTTCEEEE
T ss_pred eEEEEEEEEeeCC---------CCeEEECCCcEEEE
Confidence 7889999999992 24678888877766
No 63
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1
Probab=22.28 E-value=2.6e+02 Score=21.17 Aligned_cols=122 Identities=12% Similarity=0.184 Sum_probs=65.4
Q ss_pred EEEEEECCCCCeEEE---EeCCCCcEEeeeEEeeEEEEEEe-e-CCEEEEEeCCCcceeecCchhhhchhhccCCCCEEE
Q 030538 27 QMELRDIDTGNKVSL---RFGTEEAVERVFVEDKSFTCLYT-E-NDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVW 101 (175)
Q Consensus 27 r~klknl~TG~~~e~---~f~s~dkve~~~le~~~~qylY~-D-gd~~vFMD~etyeqi~l~~~~lgd~~~~L~eg~~v~ 101 (175)
.++|+|+.||.-+.- +++++..=..+.. |-+. | ++.|.+.....+. .....+++.|+.|.
T Consensus 12 ~I~L~h~~t~~~LHSH~~~y~~gs~qQqVT~------y~~~~D~nn~W~I~~~~~~~---------~~~~~~v~~Gd~IR 76 (187)
T 1t9f_A 12 VLKFINANDGSRLHSHDVKYGSGSGQQSVTA------VKNSDDINSHWQIFPALNAK---------CNRGDAIKCGDKIR 76 (187)
T ss_dssp EEEEEETTTCCEEEEEEEECSSSSCCEEEEE------ESCSSCGGGCEEEEECTTCC---------CCTTCBCCTTCEEE
T ss_pred EEEEEECCCCcccEeCCccCCCCCCceEEEE------ECCCCCCCCEEEEEecCCCc---------cCCCCEeccCCEEE
Confidence 478999999988865 4555444333333 2222 2 3456665432221 23456899999988
Q ss_pred EEEEC-CEEEEE---eCCCe-EEEEEEEeCCCCCCccCCCCceEEEeecccEEEcccceeCCCEEE-EECCCCceee
Q 030538 102 LQLYD-GRALSG---SIPKR-VACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIF-INPQDDSYIG 172 (175)
Q Consensus 102 v~~~~-~~~i~v---~lP~~-v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~Gd~I~-V~T~~g~Y~~ 172 (175)
+.--+ ++-+.. .-|.+ -..+|.-......||+. ..=.+.++.+ .++.++.++ +...+|.|+.
T Consensus 77 L~H~~T~~~Lhsh~~~~p~s~~~~EVs~~g~~~~gd~~--d~W~vei~~~-------~~~~~~~fRL~H~~tg~yL~ 144 (187)
T 1t9f_A 77 LKHLTTGTFLHSHHFTAPLSKQHQEVSAFGSEAESDTG--DDWTVICNGD-------EWLESEQFKLRHAVTGSYLS 144 (187)
T ss_dssp EEETTTCCEEEEEEEECSSCTTSEEEEEECCTTTCCGG--GCEEEECSSS-------SCBTTSEEEEEETTTCCEEE
T ss_pred EEECCCCCCEeECCcCCCCCCCceEEEEecccCCCCCC--CeEEEEEcCC-------EEecCCeEEEEECCcCeEEe
Confidence 76433 445543 55644 23555544222223332 1222223322 356788887 4788888874
No 64
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=22.12 E-value=2.5e+02 Score=20.90 Aligned_cols=43 Identities=12% Similarity=0.214 Sum_probs=27.8
Q ss_pred eEEEEEEEeCCCCCCccCCCCceEEEeecccEEEc--------ccceeCCCEEEEECCC
Q 030538 117 RVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMV--------PSYLEIGEEIFINPQD 167 (175)
Q Consensus 117 ~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~V--------P~fI~~Gd~I~V~T~~ 167 (175)
.+.-+|+++-| +..=.+.|++|.++.+ =..|..||+|.|....
T Consensus 32 e~~g~V~e~lg--------n~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~~~ 82 (143)
T 1d7q_A 32 QEYAQVIKMLG--------NGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRD 82 (143)
T ss_dssp EEEEEEEEECS--------SSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEECSS
T ss_pred EEEEEEEEEcC--------CCEEEEEeCCCCEEEEEecccceeeEEecCCCEEEEeecc
Confidence 34555666655 2345677777776633 2468889999997753
No 65
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=22.05 E-value=41 Score=20.34 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=24.0
Q ss_pred CCcceeecCchhhhchhhccCCCCEEEEEEECCE
Q 030538 75 ETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGR 108 (175)
Q Consensus 75 etyeqi~l~~~~lgd~~~~L~eg~~v~v~~~~~~ 108 (175)
..--|+.||++... .-=|++|+.+.+...+|.
T Consensus 9 ~~kgqi~IPk~ir~--~lgi~~Gd~v~i~~~~~~ 40 (53)
T 2l66_A 9 SRNYQVTIPAKVRQ--KFQIKEGDLVKVTFDESE 40 (53)
T ss_dssp CSSSCBCCCHHHHH--HSCCCTTCEEEEEECSSS
T ss_pred CCCCEEEeCHHHHH--HcCcCCCCEEEEEEECCE
Confidence 34569999998763 234689999999887775
No 66
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=20.43 E-value=42 Score=22.89 Aligned_cols=54 Identities=7% Similarity=0.065 Sum_probs=36.3
Q ss_pred cEEeeeEEeeEEEEEEeeCCEEEEEeCCCcceeecCchhhhchhhccCCCCEEEE
Q 030538 48 AVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWL 102 (175)
Q Consensus 48 kve~~~le~~~~qylY~Dgd~~vFMD~etyeqi~l~~~~lgd~~~~L~eg~~v~v 102 (175)
.+....+.++.+++.+..++.|++.|..+-.-..|....+.. ...|.+|+.+.+
T Consensus 39 ~l~d~~vSr~Ha~i~~~~~~~~~l~Dl~S~nGt~vng~~i~~-~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 39 VLSDMSISRQHAKIIIGNDNSVLIEDLGSKNGVIVEGRKIEH-QSTLSANQVVAL 92 (106)
T ss_dssp ECCCTTSCSSCEEEEECTTSCEEEEECSCSSCCEETTEECSS-EEECCTTCCEEE
T ss_pred EeCCCCcchhhcEEEECCCCcEEEEECcCCCCeEECCEECCC-CeECCCCCEEEE
Confidence 455678899999988874556999998554445555554443 236788877664
Done!