Query 030541
Match_columns 175
No_of_seqs 184 out of 1208
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 15:18:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030541.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030541hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1120 FepC ABC-type cobalami 100.0 1.8E-35 3.8E-40 233.2 11.7 161 1-167 27-222 (258)
2 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.6E-35 1E-39 229.9 12.6 154 1-160 29-215 (254)
3 COG4555 NatA ABC-type Na+ tran 100.0 3.3E-35 7.1E-40 221.7 9.6 158 1-166 27-215 (245)
4 COG1116 TauB ABC-type nitrate/ 100.0 9.6E-35 2.1E-39 226.0 11.8 155 1-164 28-211 (248)
5 COG1126 GlnQ ABC-type polar am 100.0 1.5E-34 3.2E-39 220.3 10.7 161 1-169 27-221 (240)
6 COG1131 CcmA ABC-type multidru 100.0 3.8E-34 8.2E-39 231.6 12.4 161 1-167 30-220 (293)
7 PRK13537 nodulation ABC transp 100.0 2.6E-33 5.6E-38 228.1 12.0 161 1-167 32-221 (306)
8 COG1125 OpuBA ABC-type proline 100.0 7.4E-33 1.6E-37 215.5 11.0 156 1-163 26-215 (309)
9 PRK13536 nodulation factor exp 100.0 1.5E-32 3.3E-37 226.3 12.3 161 1-167 66-255 (340)
10 TIGR01188 drrA daunorubicin re 100.0 1.4E-32 3.1E-37 223.4 11.9 160 1-166 18-206 (302)
11 COG3839 MalK ABC-type sugar tr 100.0 2.3E-32 5E-37 222.9 11.3 155 1-161 28-211 (338)
12 COG1118 CysA ABC-type sulfate/ 100.0 1.7E-32 3.6E-37 218.2 9.8 152 2-161 28-215 (345)
13 COG3842 PotA ABC-type spermidi 100.0 3.6E-32 7.8E-37 222.8 11.0 155 1-163 30-216 (352)
14 COG0411 LivG ABC-type branched 100.0 1.9E-32 4.2E-37 212.0 8.6 161 1-167 29-233 (250)
15 COG1136 SalX ABC-type antimicr 100.0 1.4E-31 3.1E-36 207.3 13.2 153 1-161 30-219 (226)
16 cd03226 ABC_cobalt_CbiO_domain 100.0 8.6E-32 1.9E-36 207.3 11.8 156 1-162 25-204 (205)
17 TIGR00960 3a0501s02 Type II (G 100.0 1.3E-31 2.8E-36 207.8 12.0 155 1-161 28-215 (216)
18 COG1124 DppF ABC-type dipeptid 100.0 6.3E-32 1.4E-36 209.1 9.9 160 1-167 32-225 (252)
19 cd03259 ABC_Carb_Solutes_like 100.0 1.1E-31 2.3E-36 207.8 11.2 157 1-163 25-210 (213)
20 COG1135 AbcC ABC-type metal io 100.0 7.6E-32 1.7E-36 214.7 10.2 161 1-169 31-227 (339)
21 TIGR01288 nodI ATP-binding ABC 100.0 1.5E-31 3.3E-36 217.4 11.9 160 1-166 29-217 (303)
22 COG3845 ABC-type uncharacteriz 100.0 1.3E-31 2.7E-36 224.0 11.6 157 1-163 29-219 (501)
23 COG4152 ABC-type uncharacteriz 100.0 1.2E-31 2.6E-36 207.6 10.5 160 1-168 27-214 (300)
24 TIGR02673 FtsE cell division A 100.0 2.7E-31 5.8E-36 205.6 12.2 154 1-160 27-213 (214)
25 TIGR02314 ABC_MetN D-methionin 100.0 1.6E-31 3.4E-36 220.4 11.4 161 1-167 30-224 (343)
26 cd03261 ABC_Org_Solvent_Resist 100.0 2.3E-31 4.9E-36 208.9 11.7 162 1-168 25-221 (235)
27 cd03266 ABC_NatA_sodium_export 100.0 2.5E-31 5.5E-36 206.3 11.7 157 1-163 30-215 (218)
28 TIGR03522 GldA_ABC_ATP gliding 100.0 2.2E-31 4.7E-36 216.4 11.7 160 1-167 27-215 (301)
29 cd03265 ABC_DrrA DrrA is the A 100.0 2.4E-31 5.2E-36 206.9 11.3 160 1-166 25-214 (220)
30 PRK09536 btuD corrinoid ABC tr 100.0 2.3E-31 4.9E-36 223.3 12.0 161 1-167 28-222 (402)
31 COG1127 Ttg2A ABC-type transpo 100.0 4E-31 8.6E-36 204.3 12.3 161 1-168 33-230 (263)
32 cd03269 ABC_putative_ATPase Th 100.0 3.2E-31 6.9E-36 204.7 11.7 157 1-163 25-207 (210)
33 PRK11650 ugpC glycerol-3-phosp 100.0 2.2E-31 4.7E-36 220.7 11.3 158 1-164 29-215 (356)
34 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.3E-31 4.9E-36 207.0 10.3 160 1-166 29-216 (220)
35 cd03218 ABC_YhbG The ABC trans 100.0 4E-31 8.7E-36 206.9 11.7 160 1-166 25-215 (232)
36 cd03219 ABC_Mj1267_LivG_branch 100.0 4.4E-31 9.6E-36 207.2 12.0 161 1-167 25-226 (236)
37 TIGR03265 PhnT2 putative 2-ami 100.0 3.4E-31 7.5E-36 219.3 11.8 160 1-166 29-217 (353)
38 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 5.1E-31 1.1E-35 204.5 11.9 154 1-161 29-217 (218)
39 cd03225 ABC_cobalt_CbiO_domain 100.0 5.3E-31 1.2E-35 203.5 11.9 154 1-160 26-210 (211)
40 cd03268 ABC_BcrA_bacitracin_re 100.0 6.6E-31 1.4E-35 202.7 12.1 157 1-163 25-205 (208)
41 TIGR01184 ntrCD nitrate transp 100.0 6E-31 1.3E-35 206.2 11.7 161 1-167 10-198 (230)
42 COG3840 ThiQ ABC-type thiamine 100.0 4.1E-31 8.9E-36 196.9 9.8 163 2-172 25-218 (231)
43 cd03298 ABC_ThiQ_thiamine_tran 100.0 6.3E-31 1.4E-35 203.2 11.2 157 1-163 23-208 (211)
44 cd03229 ABC_Class3 This class 100.0 4.9E-31 1.1E-35 199.2 10.2 143 1-160 25-177 (178)
45 cd03301 ABC_MalK_N The N-termi 100.0 5.8E-31 1.3E-35 203.6 10.8 157 1-163 25-210 (213)
46 cd03296 ABC_CysA_sulfate_impor 100.0 7.4E-31 1.6E-35 206.5 11.3 161 1-167 27-220 (239)
47 cd03292 ABC_FtsE_transporter F 100.0 1.2E-30 2.7E-35 201.8 12.4 155 1-161 26-213 (214)
48 PRK11432 fbpC ferric transport 100.0 7.2E-31 1.5E-35 217.2 11.5 160 1-166 31-219 (351)
49 cd03258 ABC_MetN_methionine_tr 100.0 8.6E-31 1.9E-35 205.3 11.4 161 1-167 30-224 (233)
50 PRK09493 glnQ glutamine ABC tr 100.0 8.6E-31 1.9E-35 206.2 11.4 161 1-167 26-219 (240)
51 cd03262 ABC_HisP_GlnQ_permease 100.0 1.3E-30 2.8E-35 201.5 12.1 155 1-161 25-212 (213)
52 TIGR03258 PhnT 2-aminoethylpho 100.0 7.9E-31 1.7E-35 217.7 11.6 160 1-166 30-221 (362)
53 cd03263 ABC_subfamily_A The AB 100.0 1.1E-30 2.3E-35 203.0 11.5 160 1-167 27-215 (220)
54 PRK10908 cell division protein 100.0 1.4E-30 3.1E-35 202.7 12.3 157 1-163 27-216 (222)
55 cd03256 ABC_PhnC_transporter A 100.0 9.8E-31 2.1E-35 205.7 11.3 161 1-167 26-228 (241)
56 TIGR02315 ABC_phnC phosphonate 100.0 8.7E-31 1.9E-35 206.3 11.0 161 1-167 27-229 (243)
57 COG0410 LivF ABC-type branched 100.0 1.5E-30 3.3E-35 200.1 11.8 160 1-168 28-221 (237)
58 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.7E-30 3.7E-35 202.9 12.4 157 1-163 47-221 (224)
59 PRK11000 maltose/maltodextrin 100.0 9.3E-31 2E-35 218.0 11.5 159 1-165 28-215 (369)
60 cd03230 ABC_DR_subfamily_A Thi 100.0 1.3E-30 2.9E-35 196.0 10.9 142 1-161 25-172 (173)
61 PRK11153 metN DL-methionine tr 100.0 8.6E-31 1.9E-35 216.3 10.8 159 1-165 30-222 (343)
62 PRK09452 potA putrescine/sperm 100.0 1.1E-30 2.4E-35 217.7 11.3 160 1-166 39-227 (375)
63 cd03214 ABC_Iron-Siderophores_ 100.0 7.4E-31 1.6E-35 198.5 9.1 146 1-163 24-177 (180)
64 cd03224 ABC_TM1139_LivF_branch 100.0 1.6E-30 3.4E-35 202.2 11.2 160 1-166 25-214 (222)
65 PRK10851 sulfate/thiosulfate t 100.0 1.6E-30 3.5E-35 215.3 11.8 160 1-166 27-219 (353)
66 cd03215 ABC_Carb_Monos_II This 100.0 1.5E-30 3.3E-35 197.1 10.6 148 1-161 25-181 (182)
67 COG1122 CbiO ABC-type cobalt t 100.0 6.3E-31 1.4E-35 206.2 8.7 158 1-167 29-222 (235)
68 PRK13641 cbiO cobalt transport 100.0 1.3E-30 2.7E-35 210.6 10.5 160 1-166 32-227 (287)
69 TIGR02211 LolD_lipo_ex lipopro 100.0 2.4E-30 5.3E-35 201.1 11.7 155 1-162 30-219 (221)
70 COG1129 MglA ABC-type sugar tr 100.0 2.9E-30 6.3E-35 218.7 12.9 161 1-167 33-228 (500)
71 PRK13643 cbiO cobalt transport 100.0 1.4E-30 3E-35 210.5 10.5 163 1-169 31-229 (288)
72 PRK11124 artP arginine transpo 100.0 2.4E-30 5.1E-35 203.9 11.5 163 1-169 27-226 (242)
73 PRK11247 ssuB aliphatic sulfon 100.0 2.4E-30 5.2E-35 206.0 11.5 160 1-166 37-216 (257)
74 PRK13647 cbiO cobalt transport 100.0 1.4E-30 3.1E-35 209.0 10.3 161 1-167 30-221 (274)
75 PRK13637 cbiO cobalt transport 100.0 1.9E-30 4.2E-35 209.5 11.0 160 1-166 32-227 (287)
76 PRK11248 tauB taurine transpor 100.0 3.8E-30 8.2E-35 204.6 12.4 153 1-159 26-204 (255)
77 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.9E-30 6.2E-35 203.5 11.6 159 1-165 26-217 (242)
78 PRK11300 livG leucine/isoleuci 100.0 2.7E-30 5.9E-35 204.9 11.5 161 1-167 30-237 (255)
79 COG4586 ABC-type uncharacteriz 100.0 8.7E-31 1.9E-35 205.5 8.4 161 1-167 49-240 (325)
80 TIGR03740 galliderm_ABC gallid 100.0 3.7E-30 8.1E-35 200.5 12.0 160 1-166 25-206 (223)
81 cd03235 ABC_Metallic_Cations A 100.0 3.8E-30 8.2E-35 199.1 11.9 154 1-160 24-208 (213)
82 TIGR03411 urea_trans_UrtD urea 100.0 3.7E-30 8.1E-35 202.7 12.1 160 1-167 27-225 (242)
83 PRK11264 putative amino-acid A 100.0 3.2E-30 6.8E-35 204.0 11.6 160 1-166 28-226 (250)
84 COG2884 FtsE Predicted ATPase 100.0 4.9E-30 1.1E-34 192.1 11.7 158 1-164 27-217 (223)
85 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2E-30 4.3E-35 207.6 10.3 159 1-165 49-242 (269)
86 cd03237 ABC_RNaseL_inhibitor_d 100.0 3.9E-30 8.5E-35 203.6 11.6 157 1-163 24-195 (246)
87 TIGR01186 proV glycine betaine 100.0 2.5E-30 5.3E-35 214.6 10.8 160 1-166 18-212 (363)
88 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 5.2E-30 1.1E-34 201.4 12.1 158 1-165 26-213 (236)
89 cd03246 ABCC_Protease_Secretio 100.0 4.5E-30 9.7E-35 193.1 11.2 139 1-161 27-172 (173)
90 PRK13651 cobalt transporter AT 100.0 3.1E-30 6.7E-35 210.0 11.1 160 1-166 32-247 (305)
91 PRK10895 lipopolysaccharide AB 100.0 4.5E-30 9.8E-35 202.2 11.7 161 1-167 28-220 (241)
92 PRK11144 modC molybdate transp 100.0 3.3E-30 7.2E-35 213.5 11.4 159 1-165 23-210 (352)
93 TIGR02142 modC_ABC molybdenum 100.0 3.7E-30 8E-35 213.4 11.5 159 1-165 22-213 (354)
94 PRK10771 thiQ thiamine transpo 100.0 3.5E-30 7.5E-35 201.9 10.3 161 1-167 24-213 (232)
95 TIGR01277 thiQ thiamine ABC tr 100.0 4.4E-30 9.4E-35 198.9 10.8 159 1-165 23-210 (213)
96 TIGR03410 urea_trans_UrtE urea 100.0 4.1E-30 9E-35 201.0 10.6 161 1-167 25-215 (230)
97 cd03257 ABC_NikE_OppD_transpor 100.0 5.3E-30 1.2E-34 199.9 11.2 157 1-163 30-225 (228)
98 PRK11607 potG putrescine trans 100.0 7E-30 1.5E-34 213.1 12.6 157 1-163 44-229 (377)
99 PRK13652 cbiO cobalt transport 100.0 4.3E-30 9.3E-35 206.5 10.9 162 1-168 29-222 (277)
100 PRK10584 putative ABC transpor 100.0 5.3E-30 1.2E-34 200.2 11.0 156 1-163 35-225 (228)
101 PRK11614 livF leucine/isoleuci 100.0 3.9E-30 8.5E-35 202.1 10.3 159 1-167 30-220 (237)
102 PRK11629 lolD lipoprotein tran 100.0 8.6E-30 1.9E-34 199.8 12.0 157 1-164 34-225 (233)
103 cd03267 ABC_NatA_like Similar 100.0 7.6E-30 1.6E-34 200.6 11.6 157 1-163 46-233 (236)
104 PRK11831 putative ABC transpor 100.0 4.6E-30 9.9E-35 205.5 10.5 160 1-166 32-226 (269)
105 PRK13543 cytochrome c biogenes 100.0 1.6E-29 3.4E-34 196.1 13.1 153 1-159 36-212 (214)
106 PRK13638 cbiO cobalt transport 100.0 4.9E-30 1.1E-34 205.5 10.5 160 1-166 26-218 (271)
107 PRK11231 fecE iron-dicitrate t 100.0 5E-30 1.1E-34 203.7 10.4 161 1-167 27-221 (255)
108 PRK13646 cbiO cobalt transport 100.0 3.9E-30 8.5E-35 207.6 9.9 162 1-168 32-230 (286)
109 PRK13634 cbiO cobalt transport 100.0 4.5E-30 9.7E-35 207.7 10.1 161 1-167 32-229 (290)
110 PRK13548 hmuV hemin importer A 100.0 7.6E-30 1.7E-34 203.1 11.2 160 1-166 27-223 (258)
111 cd03297 ABC_ModC_molybdenum_tr 100.0 7.6E-30 1.6E-34 197.6 10.9 156 3-164 24-212 (214)
112 cd03264 ABC_drug_resistance_li 100.0 8.5E-30 1.8E-34 196.9 11.2 155 1-163 25-208 (211)
113 TIGR03873 F420-0_ABC_ATP propo 100.0 7.8E-30 1.7E-34 202.7 11.2 161 1-167 26-220 (256)
114 PRK15439 autoinducer 2 ABC tra 100.0 9.9E-30 2.1E-34 219.7 12.7 163 1-169 36-225 (510)
115 PRK10070 glycine betaine trans 100.0 7E-30 1.5E-34 214.1 11.4 159 1-165 53-246 (400)
116 COG3638 ABC-type phosphate/pho 100.0 4E-30 8.6E-35 198.2 9.1 158 1-166 29-230 (258)
117 PRK10619 histidine/lysine/argi 100.0 7.8E-30 1.7E-34 202.8 10.9 161 1-167 30-235 (257)
118 cd03216 ABC_Carb_Monos_I This 100.0 8.6E-30 1.9E-34 190.0 10.3 137 1-163 25-161 (163)
119 PRK13636 cbiO cobalt transport 100.0 6.5E-30 1.4E-34 206.0 10.2 162 1-168 31-226 (283)
120 PRK14250 phosphate ABC transpo 100.0 6.8E-30 1.5E-34 201.4 9.9 160 1-166 28-214 (241)
121 PRK10575 iron-hydroxamate tran 100.0 8.5E-30 1.8E-34 203.5 10.5 159 1-165 36-229 (265)
122 PRK13649 cbiO cobalt transport 100.0 1E-29 2.2E-34 204.5 10.9 158 1-164 32-225 (280)
123 TIGR03415 ABC_choXWV_ATP choli 100.0 1.6E-29 3.4E-34 210.8 12.0 159 1-165 49-246 (382)
124 cd03213 ABCG_EPDR ABCG transpo 100.0 4.8E-30 1E-34 196.3 8.2 151 1-163 34-191 (194)
125 PRK13639 cbiO cobalt transport 100.0 1.4E-29 3E-34 203.4 11.1 161 1-167 27-220 (275)
126 TIGR03771 anch_rpt_ABC anchore 100.0 2.9E-29 6.3E-34 195.8 12.6 159 1-166 5-194 (223)
127 cd03300 ABC_PotA_N PotA is an 100.0 1.6E-29 3.5E-34 198.1 11.2 161 1-167 25-214 (232)
128 PRK13650 cbiO cobalt transport 100.0 9.3E-30 2E-34 204.8 10.0 158 1-165 32-221 (279)
129 PRK10253 iron-enterobactin tra 100.0 1.2E-29 2.6E-34 202.6 10.5 160 1-166 32-226 (265)
130 TIGR01978 sufC FeS assembly AT 100.0 2.4E-29 5.1E-34 198.0 11.8 162 1-168 25-229 (243)
131 PRK09700 D-allose transporter 100.0 2.4E-29 5.2E-34 217.2 12.9 161 1-167 30-228 (510)
132 TIGR03005 ectoine_ehuA ectoine 100.0 1.9E-29 4.1E-34 200.0 11.2 161 1-167 25-230 (252)
133 cd03222 ABC_RNaseL_inhibitor T 100.0 2.3E-29 4.9E-34 190.0 11.1 129 1-165 24-153 (177)
134 cd03260 ABC_PstB_phosphate_tra 100.0 1.2E-29 2.7E-34 198.0 9.8 159 1-166 25-222 (227)
135 PRK13538 cytochrome c biogenes 100.0 3.5E-29 7.6E-34 192.8 12.2 151 1-157 26-202 (204)
136 TIGR03608 L_ocin_972_ABC putat 100.0 3.5E-29 7.6E-34 192.6 12.1 150 1-157 23-206 (206)
137 PRK15112 antimicrobial peptide 100.0 1.7E-29 3.6E-34 202.1 10.5 159 1-166 38-232 (267)
138 TIGR00968 3a0106s01 sulfate AB 100.0 2.2E-29 4.7E-34 198.1 10.7 161 1-167 25-214 (237)
139 PRK13644 cbiO cobalt transport 100.0 1.9E-29 4.1E-34 202.5 10.5 159 1-166 27-217 (274)
140 cd03228 ABCC_MRP_Like The MRP 100.0 3.2E-29 7E-34 188.1 11.1 137 1-160 27-170 (171)
141 TIGR02769 nickel_nikE nickel i 100.0 2.3E-29 5E-34 201.0 10.9 161 1-167 36-234 (265)
142 PRK13631 cbiO cobalt transport 100.0 1.7E-29 3.8E-34 206.7 10.4 162 1-168 51-260 (320)
143 TIGR02770 nickel_nikD nickel i 100.0 2.4E-29 5.2E-34 197.0 10.8 160 1-166 11-208 (230)
144 PRK10938 putative molybdenum t 100.0 2E-29 4.3E-34 216.8 11.2 160 1-166 28-217 (490)
145 PRK10762 D-ribose transporter 100.0 4.2E-29 9.1E-34 215.4 13.2 158 1-164 29-221 (501)
146 PRK13546 teichoic acids export 100.0 3.6E-29 7.7E-34 200.0 11.4 160 1-166 49-225 (264)
147 PRK13635 cbiO cobalt transport 100.0 2.6E-29 5.5E-34 202.2 10.6 159 1-166 32-222 (279)
148 cd03231 ABC_CcmA_heme_exporter 100.0 9.6E-29 2.1E-33 190.0 13.1 151 1-157 25-198 (201)
149 PRK13645 cbiO cobalt transport 100.0 2.5E-29 5.5E-34 203.1 10.3 159 1-165 36-232 (289)
150 cd03299 ABC_ModC_like Archeal 100.0 3.6E-29 7.8E-34 196.6 10.8 159 1-165 24-211 (235)
151 cd03232 ABC_PDR_domain2 The pl 100.0 1.2E-29 2.6E-34 193.8 7.9 151 1-163 32-189 (192)
152 PRK15079 oligopeptide ABC tran 100.0 4E-29 8.6E-34 205.5 11.4 160 1-166 46-244 (331)
153 COG1137 YhbG ABC-type (unclass 100.0 5.9E-30 1.3E-34 193.1 5.9 157 1-167 29-222 (243)
154 cd03247 ABCC_cytochrome_bd The 100.0 2.4E-29 5.3E-34 189.8 9.2 143 1-163 27-175 (178)
155 TIGR00972 3a0107s01c2 phosphat 100.0 4.5E-29 9.8E-34 197.3 10.8 159 1-166 26-225 (247)
156 PRK09984 phosphonate/organopho 100.0 4.1E-29 9E-34 199.1 10.6 163 1-169 29-238 (262)
157 COG4604 CeuD ABC-type enteroch 100.0 2E-29 4.4E-34 190.0 8.2 160 1-168 26-220 (252)
158 cd03234 ABCG_White The White s 100.0 6.3E-29 1.4E-33 194.0 11.4 158 1-164 32-224 (226)
159 PRK10982 galactose/methyl gala 100.0 8E-29 1.7E-33 213.1 12.8 159 1-165 23-215 (491)
160 PRK09700 D-allose transporter 100.0 7.8E-29 1.7E-33 214.1 12.8 157 1-163 288-488 (510)
161 cd03254 ABCC_Glucan_exporter_l 100.0 5E-29 1.1E-33 194.7 10.0 157 1-168 28-221 (229)
162 PRK13648 cbiO cobalt transport 100.0 7.7E-29 1.7E-33 198.4 11.2 158 1-165 34-223 (269)
163 PRK13549 xylose transporter AT 100.0 1.2E-28 2.5E-33 212.8 13.1 159 1-165 30-224 (506)
164 COG4559 ABC-type hemin transpo 100.0 9.8E-29 2.1E-33 188.0 10.9 160 1-164 26-221 (259)
165 cd03252 ABCC_Hemolysin The ABC 100.0 5.6E-29 1.2E-33 195.5 9.9 155 1-166 27-218 (237)
166 TIGR01166 cbiO cobalt transpor 100.0 9.2E-29 2E-33 188.3 10.8 141 1-147 17-190 (190)
167 PRK11701 phnK phosphonate C-P 100.0 8.4E-29 1.8E-33 196.9 11.0 161 1-167 31-235 (258)
168 cd03233 ABC_PDR_domain1 The pl 100.0 3.2E-29 6.8E-34 192.9 8.2 156 1-163 32-199 (202)
169 PRK15056 manganese/iron transp 100.0 1.3E-28 2.9E-33 197.3 12.0 157 1-164 32-221 (272)
170 PRK13633 cobalt transporter AT 100.0 6.5E-29 1.4E-33 199.9 10.2 160 1-167 35-227 (280)
171 cd03251 ABCC_MsbA MsbA is an e 100.0 8.6E-29 1.9E-33 194.0 10.6 156 1-167 27-219 (234)
172 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.3E-28 2.7E-33 193.6 11.4 155 1-166 28-219 (238)
173 PRK10247 putative ABC transpor 100.0 2.1E-28 4.7E-33 191.1 12.4 159 1-166 32-219 (225)
174 PRK13632 cbiO cobalt transport 100.0 6.6E-29 1.4E-33 199.0 9.8 158 1-165 34-223 (271)
175 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.1E-28 2.5E-33 189.5 10.5 151 1-165 25-186 (200)
176 TIGR02982 heterocyst_DevA ABC 100.0 2.2E-28 4.8E-33 190.2 12.2 154 1-161 30-218 (220)
177 PRK15439 autoinducer 2 ABC tra 100.0 1.4E-28 3E-33 212.6 12.0 158 1-164 288-483 (510)
178 cd03245 ABCC_bacteriocin_expor 100.0 1.3E-28 2.8E-33 191.3 10.7 152 1-163 29-217 (220)
179 PRK11308 dppF dipeptide transp 100.0 1.4E-28 3E-33 202.0 11.3 160 1-166 40-237 (327)
180 PRK09544 znuC high-affinity zi 100.0 2.3E-28 5E-33 194.0 12.0 153 1-159 29-196 (251)
181 COG4175 ProV ABC-type proline/ 100.0 1.3E-28 2.9E-33 196.7 10.6 154 1-167 53-248 (386)
182 PRK13539 cytochrome c biogenes 100.0 3.5E-28 7.6E-33 187.7 12.6 150 1-158 27-199 (207)
183 TIGR02323 CP_lyasePhnK phospho 100.0 2E-28 4.3E-33 194.1 11.5 158 1-165 28-230 (253)
184 PRK11288 araG L-arabinose tran 100.0 2.5E-28 5.4E-33 210.5 12.9 157 1-163 29-219 (501)
185 PRK13545 tagH teichoic acids e 100.0 1.3E-28 2.7E-33 210.7 10.9 159 1-165 49-224 (549)
186 COG4525 TauB ABC-type taurine 100.0 9.9E-29 2.1E-33 186.1 9.0 165 1-172 30-221 (259)
187 PRK11022 dppD dipeptide transp 100.0 2E-28 4.3E-33 201.0 11.2 160 1-166 32-236 (326)
188 PRK10418 nikD nickel transport 100.0 2E-28 4.4E-33 194.4 10.9 161 1-167 28-224 (254)
189 COG1134 TagH ABC-type polysacc 100.0 1.8E-28 3.9E-33 190.1 10.3 157 1-163 52-226 (249)
190 PRK13640 cbiO cobalt transport 100.0 1.6E-28 3.5E-33 197.9 10.4 159 1-166 32-225 (282)
191 PRK03695 vitamin B12-transport 100.0 2.2E-28 4.8E-33 193.7 11.0 162 1-167 21-216 (248)
192 PRK13642 cbiO cobalt transport 100.0 1.5E-28 3.3E-33 197.5 10.2 160 1-167 32-223 (277)
193 PRK11288 araG L-arabinose tran 100.0 3.7E-28 7.9E-33 209.5 13.2 158 1-164 278-476 (501)
194 PRK13547 hmuV hemin importer A 100.0 3.1E-28 6.7E-33 195.3 11.8 158 1-164 26-235 (272)
195 PRK10762 D-ribose transporter 100.0 2.8E-28 6.1E-33 210.2 12.2 158 1-164 277-475 (501)
196 PRK10419 nikE nickel transport 100.0 2.5E-28 5.4E-33 195.4 11.1 160 1-166 37-234 (268)
197 PRK14247 phosphate ABC transpo 100.0 3.5E-28 7.5E-33 192.4 11.6 158 1-165 28-226 (250)
198 PRK15177 Vi polysaccharide exp 100.0 3.3E-28 7.2E-33 188.7 11.3 159 1-166 12-185 (213)
199 PRK15093 antimicrobial peptide 100.0 2.2E-28 4.7E-33 201.1 10.8 161 1-167 32-242 (330)
200 PRK09580 sufC cysteine desulfu 100.0 1.9E-28 4.2E-33 193.5 10.1 162 1-168 26-230 (248)
201 PRK14268 phosphate ABC transpo 100.0 2.5E-28 5.5E-33 194.2 10.8 158 1-165 37-234 (258)
202 PRK14242 phosphate transporter 100.0 2.1E-28 4.4E-33 194.0 10.2 159 1-166 31-230 (253)
203 TIGR02324 CP_lyasePhnL phospho 100.0 5.2E-28 1.1E-32 188.5 12.3 152 1-158 33-223 (224)
204 PRK14267 phosphate ABC transpo 100.0 3.8E-28 8.3E-33 192.5 11.4 157 1-164 29-228 (253)
205 PRK09473 oppD oligopeptide tra 100.0 1.8E-28 3.9E-33 201.6 9.7 161 1-167 41-245 (330)
206 TIGR01187 potA spermidine/putr 100.0 2.1E-28 4.6E-33 200.8 10.1 153 7-165 1-182 (325)
207 PRK13549 xylose transporter AT 100.0 4.4E-28 9.6E-33 209.2 12.5 159 1-165 287-486 (506)
208 TIGR02633 xylG D-xylose ABC tr 100.0 5.6E-28 1.2E-32 208.3 12.9 157 1-163 285-482 (500)
209 cd03253 ABCC_ATM1_transporter 100.0 3.1E-28 6.7E-33 191.0 10.2 156 1-167 26-218 (236)
210 PRK13540 cytochrome c biogenes 100.0 8.6E-28 1.9E-32 184.5 12.4 146 1-153 26-195 (200)
211 PRK13541 cytochrome c biogenes 100.0 7.6E-28 1.6E-32 184.1 12.0 147 1-154 25-192 (195)
212 cd03236 ABC_RNaseL_inhibitor_d 100.0 8.8E-28 1.9E-32 191.1 12.6 155 1-161 25-216 (255)
213 CHL00131 ycf16 sulfate ABC tra 100.0 5.6E-28 1.2E-32 191.4 11.3 162 1-168 32-236 (252)
214 TIGR02633 xylG D-xylose ABC tr 100.0 8E-28 1.7E-32 207.3 12.7 159 1-165 26-222 (500)
215 cd03248 ABCC_TAP TAP, the Tran 100.0 6.1E-28 1.3E-32 188.3 10.9 153 1-161 39-225 (226)
216 PRK14273 phosphate ABC transpo 100.0 4E-28 8.6E-33 192.6 9.9 160 1-167 32-232 (254)
217 PRK14259 phosphate ABC transpo 100.0 4.5E-28 9.8E-33 194.0 10.2 149 1-159 38-228 (269)
218 PRK14269 phosphate ABC transpo 100.0 7.1E-28 1.5E-32 190.4 10.9 159 1-166 27-223 (246)
219 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 7.4E-28 1.6E-32 176.2 10.1 119 1-160 25-143 (144)
220 TIGR01189 ccmA heme ABC export 100.0 1.1E-27 2.4E-32 183.5 11.5 142 1-148 25-191 (198)
221 PRK14270 phosphate ABC transpo 99.9 2.2E-28 4.8E-33 193.7 7.8 160 1-167 29-229 (251)
222 PRK10744 pstB phosphate transp 99.9 3.1E-28 6.8E-33 193.9 8.6 158 1-165 38-236 (260)
223 PRK10261 glutathione transport 99.9 4.5E-28 9.8E-33 213.7 10.5 160 1-166 349-546 (623)
224 cd03369 ABCC_NFT1 Domain 2 of 99.9 9.7E-28 2.1E-32 185.0 11.1 153 1-164 33-203 (207)
225 PRK14235 phosphate transporter 99.9 6.9E-28 1.5E-32 192.7 10.5 160 1-167 44-245 (267)
226 cd03223 ABCD_peroxisomal_ALDP 99.9 1.2E-27 2.6E-32 179.0 11.0 139 1-161 26-164 (166)
227 PRK10982 galactose/methyl gala 99.9 1.2E-27 2.6E-32 205.9 12.4 156 1-163 273-470 (491)
228 PRK14262 phosphate ABC transpo 99.9 8.9E-28 1.9E-32 190.1 10.7 159 1-166 28-227 (250)
229 COG1123 ATPase components of v 99.9 7.5E-28 1.6E-32 205.4 11.0 160 1-167 316-513 (539)
230 PRK14244 phosphate ABC transpo 99.9 8.9E-28 1.9E-32 190.3 10.4 159 1-166 30-230 (251)
231 PRK14256 phosphate ABC transpo 99.9 1.5E-27 3.2E-32 189.1 11.6 160 1-167 29-230 (252)
232 TIGR01257 rim_protein retinal- 99.9 5.9E-28 1.3E-32 230.8 11.0 157 1-163 1964-2149(2272)
233 COG4608 AppF ABC-type oligopep 99.9 7.5E-28 1.6E-32 189.6 9.7 152 1-167 38-193 (268)
234 PRK14241 phosphate transporter 99.9 1.6E-27 3.4E-32 189.6 11.4 151 1-158 29-221 (258)
235 cd03244 ABCC_MRP_domain2 Domai 99.9 9.2E-28 2E-32 186.6 9.8 157 1-165 29-218 (221)
236 PRK14240 phosphate transporter 99.9 3.1E-28 6.7E-33 192.7 7.2 159 1-166 28-227 (250)
237 PRK14248 phosphate ABC transpo 99.9 6.7E-28 1.4E-32 192.8 9.1 159 1-166 46-245 (268)
238 PRK14245 phosphate ABC transpo 99.9 1.2E-27 2.6E-32 189.5 10.4 159 1-166 28-227 (250)
239 PRK10261 glutathione transport 99.9 9.1E-28 2E-32 211.8 10.6 162 1-168 41-253 (623)
240 TIGR03269 met_CoM_red_A2 methy 99.9 1.3E-27 2.8E-32 206.9 11.1 159 1-165 309-509 (520)
241 COG1119 ModF ABC-type molybden 99.9 3.1E-27 6.7E-32 183.3 11.8 160 1-166 56-255 (257)
242 cd03290 ABCC_SUR1_N The SUR do 99.9 2.1E-27 4.5E-32 184.5 10.9 153 1-160 26-217 (218)
243 PRK14251 phosphate ABC transpo 99.9 1.5E-27 3.3E-32 188.9 10.2 158 1-165 29-227 (251)
244 PRK14274 phosphate ABC transpo 99.9 1.4E-27 3E-32 190.0 10.1 160 1-167 37-237 (259)
245 PRK14237 phosphate transporter 99.9 1.5E-27 3.2E-32 190.8 10.1 160 1-167 45-245 (267)
246 PRK15134 microcin C ABC transp 99.9 1.5E-27 3.3E-32 206.9 10.8 159 1-165 34-238 (529)
247 cd03250 ABCC_MRP_domain1 Domai 99.9 2.7E-27 5.8E-32 182.1 10.8 152 1-160 30-203 (204)
248 PRK14249 phosphate ABC transpo 99.9 1.1E-27 2.4E-32 189.7 8.9 158 1-165 29-227 (251)
249 TIGR03269 met_CoM_red_A2 methy 99.9 2E-27 4.3E-32 205.8 11.1 161 1-167 25-252 (520)
250 PRK14239 phosphate transporter 99.9 1.7E-27 3.8E-32 188.5 9.7 160 1-167 30-230 (252)
251 cd03238 ABC_UvrA The excision 99.9 4.8E-27 1.1E-31 177.2 11.0 144 1-164 20-168 (176)
252 PRK14238 phosphate transporter 99.9 2.1E-27 4.5E-32 190.4 9.2 157 1-167 49-249 (271)
253 PRK14272 phosphate ABC transpo 99.9 4E-27 8.8E-32 186.4 10.8 159 1-166 29-229 (252)
254 cd00267 ABC_ATPase ABC (ATP-bi 99.9 6.4E-27 1.4E-31 173.1 10.9 133 1-160 24-156 (157)
255 COG1101 PhnK ABC-type uncharac 99.9 6.1E-27 1.3E-31 178.6 11.0 160 1-166 31-231 (263)
256 PRK13409 putative ATPase RIL; 99.9 2.5E-27 5.5E-32 207.5 10.2 153 1-160 98-287 (590)
257 PRK14236 phosphate transporter 99.9 4.4E-27 9.5E-32 188.5 10.7 160 1-167 50-250 (272)
258 PRK14275 phosphate ABC transpo 99.9 3.9E-27 8.5E-32 190.2 10.4 158 1-165 64-262 (286)
259 PRK14243 phosphate transporter 99.9 2.8E-27 6.2E-32 188.9 9.2 148 1-158 35-224 (264)
260 PRK15134 microcin C ABC transp 99.9 2.8E-27 6.1E-32 205.2 9.7 159 1-166 311-508 (529)
261 TIGR01257 rim_protein retinal- 99.9 4.9E-27 1.1E-31 224.6 11.7 160 1-167 955-1143(2272)
262 PRK14246 phosphate ABC transpo 99.9 8.7E-27 1.9E-31 185.5 11.3 159 1-166 35-234 (257)
263 PRK14263 phosphate ABC transpo 99.9 6.5E-27 1.4E-31 186.6 10.4 151 1-158 33-222 (261)
264 PRK13409 putative ATPase RIL; 99.9 7.6E-27 1.7E-31 204.5 11.8 154 1-161 364-531 (590)
265 PRK14253 phosphate ABC transpo 99.9 6.3E-27 1.4E-31 185.1 10.2 160 1-167 28-227 (249)
266 PRK14258 phosphate ABC transpo 99.9 8.3E-27 1.8E-31 185.9 11.0 159 1-165 32-237 (261)
267 PRK14265 phosphate ABC transpo 99.9 3.1E-27 6.7E-32 189.7 8.5 151 1-158 45-234 (274)
268 PRK14254 phosphate ABC transpo 99.9 6.2E-27 1.3E-31 188.9 10.2 158 1-165 64-261 (285)
269 COG4148 ModC ABC-type molybdat 99.9 4.8E-27 1E-31 185.2 9.2 155 3-163 25-208 (352)
270 PRK14271 phosphate ABC transpo 99.9 8.4E-27 1.8E-31 187.4 10.8 158 1-165 46-243 (276)
271 PRK15064 ABC transporter ATP-b 99.9 7E-27 1.5E-31 202.8 11.0 159 1-169 26-238 (530)
272 cd03288 ABCC_SUR2 The SUR doma 99.9 1.7E-26 3.6E-31 183.8 12.1 155 1-166 46-236 (257)
273 PRK14261 phosphate ABC transpo 99.9 1E-26 2.3E-31 184.3 10.7 160 1-167 31-231 (253)
274 PRK14260 phosphate ABC transpo 99.9 1.2E-26 2.5E-31 184.8 10.8 151 1-158 32-223 (259)
275 PRK14266 phosphate ABC transpo 99.9 1.1E-26 2.3E-31 183.9 9.8 160 1-167 28-228 (250)
276 PRK14255 phosphate ABC transpo 99.9 1.6E-26 3.5E-31 183.1 10.8 158 1-165 30-228 (252)
277 PRK11819 putative ABC transpor 99.9 1.9E-26 4E-31 201.2 11.7 161 1-171 32-248 (556)
278 PRK15064 ABC transporter ATP-b 99.9 1.1E-26 2.4E-31 201.6 10.1 159 1-168 344-520 (530)
279 PRK10938 putative molybdenum t 99.9 2.3E-26 5E-31 197.8 11.9 159 1-165 285-484 (490)
280 PRK10636 putative ABC transpor 99.9 1.7E-26 3.7E-31 204.1 11.3 163 1-172 26-235 (638)
281 PLN03211 ABC transporter G-25; 99.9 1.5E-26 3.3E-31 204.8 10.8 161 1-167 93-290 (659)
282 COG0444 DppD ABC-type dipeptid 99.9 1.3E-26 2.8E-31 186.1 9.2 166 1-172 30-242 (316)
283 COG4181 Predicted ABC-type tra 99.9 4.9E-26 1.1E-30 168.4 11.5 155 1-162 35-224 (228)
284 COG1123 ATPase components of v 99.9 2E-26 4.3E-31 196.7 10.8 162 1-168 34-239 (539)
285 PRK10636 putative ABC transpor 99.9 1.8E-26 3.8E-31 204.0 10.6 160 1-169 337-513 (638)
286 PRK14252 phosphate ABC transpo 99.9 2.8E-26 6E-31 183.2 10.6 159 1-166 41-242 (265)
287 PRK14264 phosphate ABC transpo 99.9 1.8E-26 3.9E-31 187.8 9.2 158 1-165 70-281 (305)
288 COG1117 PstB ABC-type phosphat 99.9 2.3E-26 5E-31 175.2 8.9 153 1-163 32-227 (253)
289 PRK14257 phosphate ABC transpo 99.9 3.5E-26 7.6E-31 187.9 10.2 161 1-168 107-308 (329)
290 COG2274 SunT ABC-type bacterio 99.9 2.9E-26 6.3E-31 203.2 10.0 159 1-167 498-690 (709)
291 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 5.6E-26 1.2E-30 198.0 11.4 159 1-169 30-244 (552)
292 cd03289 ABCC_CFTR2 The CFTR su 99.9 4.2E-26 9.1E-31 183.2 9.7 156 1-165 29-217 (275)
293 PRK11147 ABC transporter ATPas 99.9 6.3E-26 1.4E-30 200.5 11.2 161 1-172 28-242 (635)
294 COG4598 HisP ABC-type histidin 99.9 7.7E-26 1.7E-30 168.7 9.2 158 1-166 31-234 (256)
295 TIGR01842 type_I_sec_PrtD type 99.9 9.8E-26 2.1E-30 196.2 11.1 161 1-168 343-537 (544)
296 PRK11147 ABC transporter ATPas 99.9 7.6E-26 1.6E-30 200.0 10.5 161 1-171 344-526 (635)
297 PRK11174 cysteine/glutathione 99.9 1.1E-25 2.3E-30 197.4 11.4 158 1-167 375-566 (588)
298 cd03291 ABCC_CFTR1 The CFTR su 99.9 1.1E-25 2.4E-30 181.3 10.5 156 1-165 62-239 (282)
299 COG0488 Uup ATPase components 99.9 8.7E-26 1.9E-30 194.6 10.1 160 1-172 28-239 (530)
300 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 9.4E-26 2E-30 200.9 10.3 157 1-167 478-667 (686)
301 PRK11176 lipid transporter ATP 99.9 1.1E-25 2.3E-30 197.1 10.1 159 1-167 368-561 (582)
302 PRK11819 putative ABC transpor 99.9 1.1E-25 2.5E-30 196.3 10.1 160 1-169 349-529 (556)
303 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 8.3E-26 1.8E-30 201.9 9.4 157 1-167 504-694 (710)
304 PRK10535 macrolide transporter 99.9 1.9E-25 4.1E-30 197.9 11.0 160 1-167 33-226 (648)
305 PRK10790 putative multidrug tr 99.9 1.6E-25 3.5E-30 196.5 9.9 159 1-167 366-557 (592)
306 TIGR01846 type_I_sec_HlyB type 99.9 2E-25 4.4E-30 199.0 10.3 159 1-167 482-674 (694)
307 PRK11160 cysteine/glutathione 99.9 2.1E-25 4.6E-30 195.2 10.1 159 1-167 365-556 (574)
308 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 4.1E-25 8.8E-30 192.7 11.7 150 1-159 347-515 (552)
309 COG4988 CydD ABC-type transpor 99.9 4.4E-25 9.6E-30 188.2 11.5 160 1-168 346-538 (559)
310 TIGR03375 type_I_sec_LssB type 99.9 2E-25 4.4E-30 199.0 9.6 157 1-168 490-683 (694)
311 TIGR01192 chvA glucan exporter 99.9 2.7E-25 5.8E-30 195.0 10.1 159 1-167 360-552 (585)
312 PRK10789 putative multidrug tr 99.9 2.5E-25 5.4E-30 194.6 9.7 159 1-167 340-532 (569)
313 TIGR01193 bacteriocin_ABC ABC- 99.9 1.9E-25 4.2E-30 199.5 8.8 155 1-167 499-691 (708)
314 PRK13657 cyclic beta-1,2-gluca 99.9 3.5E-25 7.7E-30 194.2 10.2 158 1-166 360-551 (588)
315 COG4674 Uncharacterized ABC-ty 99.9 1.3E-25 2.8E-30 169.2 6.4 161 1-168 30-230 (249)
316 TIGR00955 3a01204 The Eye Pigm 99.9 4.6E-25 9.9E-30 194.5 10.3 163 1-169 50-252 (617)
317 COG1132 MdlB ABC-type multidru 99.9 7.5E-25 1.6E-29 191.4 11.2 159 1-167 354-546 (567)
318 TIGR00958 3a01208 Conjugate Tr 99.9 3.4E-25 7.4E-30 198.1 9.2 157 1-167 506-696 (711)
319 TIGR02203 MsbA_lipidA lipid A 99.9 7.7E-25 1.7E-29 191.2 10.5 156 1-164 357-547 (571)
320 TIGR02857 CydD thiol reductant 99.9 1.1E-24 2.4E-29 188.9 10.9 149 1-157 347-529 (529)
321 COG4619 ABC-type uncharacteriz 99.9 1.4E-24 3E-29 160.3 9.8 154 1-161 28-211 (223)
322 COG4161 ArtP ABC-type arginine 99.9 1.4E-24 3E-29 159.7 9.7 165 1-173 27-230 (242)
323 TIGR02204 MsbA_rel ABC transpo 99.9 1E-24 2.2E-29 190.7 10.3 159 1-167 365-557 (576)
324 PRK10522 multidrug transporter 99.9 1.4E-24 3.1E-29 189.0 11.0 156 1-163 348-528 (547)
325 TIGR01194 cyc_pep_trnsptr cycl 99.9 2.5E-24 5.4E-29 187.8 12.3 156 1-163 367-549 (555)
326 COG0396 sufC Cysteine desulfur 99.9 1.8E-24 3.8E-29 166.4 9.9 159 1-166 29-227 (251)
327 PLN03073 ABC transporter F fam 99.9 1E-24 2.2E-29 194.5 10.0 150 1-163 534-703 (718)
328 COG4172 ABC-type uncharacteriz 99.9 1.6E-24 3.4E-29 178.2 9.1 165 1-172 312-515 (534)
329 COG4618 ArpD ABC-type protease 99.9 5.5E-24 1.2E-28 178.8 12.1 153 1-162 361-549 (580)
330 KOG0055 Multidrug/pheromone ex 99.9 4.4E-24 9.6E-29 194.4 11.9 157 1-168 378-571 (1228)
331 COG4167 SapF ABC-type antimicr 99.9 9.6E-24 2.1E-28 158.0 11.4 160 1-166 38-232 (267)
332 TIGR00956 3a01205 Pleiotropic 99.9 3.5E-24 7.6E-29 202.2 10.9 161 1-167 788-987 (1394)
333 KOG0059 Lipid exporter ABCA1 a 99.9 4.8E-24 1E-28 194.2 10.2 156 1-162 590-776 (885)
334 PTZ00265 multidrug resistance 99.9 1.1E-23 2.4E-28 199.2 11.8 151 1-161 410-656 (1466)
335 PLN03140 ABC transporter G fam 99.9 9.9E-24 2.2E-28 199.2 11.2 161 1-167 905-1104(1470)
336 COG4133 CcmA ABC-type transpor 99.9 3.7E-23 8E-28 154.9 11.8 141 1-147 27-193 (209)
337 TIGR02868 CydC thiol reductant 99.9 7.7E-24 1.7E-28 183.6 9.2 137 1-144 360-529 (529)
338 PLN03232 ABC transporter C fam 99.9 2.1E-23 4.6E-28 198.2 10.0 159 1-167 1261-1452(1495)
339 PLN03130 ABC transporter C fam 99.9 3.6E-23 7.7E-28 197.4 10.9 158 1-166 1264-1454(1622)
340 COG4987 CydC ABC-type transpor 99.9 3.6E-23 7.9E-28 174.9 9.6 161 1-169 363-557 (573)
341 TIGR00954 3a01203 Peroxysomal 99.9 6.1E-23 1.3E-27 182.2 11.3 149 1-160 477-654 (659)
342 TIGR00956 3a01205 Pleiotropic 99.9 3.1E-23 6.6E-28 195.8 9.8 161 1-167 86-294 (1394)
343 PTZ00265 multidrug resistance 99.9 4.4E-23 9.5E-28 195.3 10.1 152 1-159 1193-1433(1466)
344 PLN03073 ABC transporter F fam 99.9 4.3E-23 9.3E-28 184.1 8.7 159 1-169 202-427 (718)
345 cd03270 ABC_UvrA_I The excisio 99.9 1.8E-22 4E-27 157.9 10.5 77 81-164 140-224 (226)
346 KOG0058 Peptide exporter, ABC 99.9 1.4E-22 2.9E-27 176.3 10.5 159 1-167 493-685 (716)
347 PLN03140 ABC transporter G fam 99.9 5E-23 1.1E-27 194.5 7.9 161 1-167 190-421 (1470)
348 COG0488 Uup ATPase components 99.9 1.5E-22 3.3E-27 174.6 10.2 161 1-171 347-523 (530)
349 KOG0057 Mitochondrial Fe/S clu 99.9 1.2E-22 2.7E-27 171.9 9.4 156 1-167 377-568 (591)
350 TIGR00957 MRP_assoc_pro multi 99.9 1.6E-22 3.6E-27 192.4 10.4 159 1-167 1311-1502(1522)
351 TIGR01271 CFTR_protein cystic 99.9 1.6E-22 3.5E-27 192.0 10.3 158 1-167 451-630 (1490)
352 PTZ00243 ABC transporter; Prov 99.9 2.7E-22 5.8E-27 191.0 10.7 158 1-166 1335-1526(1560)
353 cd03278 ABC_SMC_barmotin Barmo 99.9 5.4E-22 1.2E-26 152.3 9.6 150 2-159 23-190 (197)
354 KOG0061 Transporter, ABC super 99.9 5.2E-22 1.1E-26 174.6 9.0 162 1-168 55-255 (613)
355 TIGR00957 MRP_assoc_pro multi 99.9 7.6E-22 1.6E-26 187.9 9.9 160 1-168 663-845 (1522)
356 PF00005 ABC_tran: ABC transpo 99.9 3.2E-22 7E-27 144.2 5.4 105 1-107 10-135 (137)
357 COG4107 PhnK ABC-type phosphon 99.9 2.9E-21 6.3E-26 143.7 10.5 162 1-169 31-237 (258)
358 COG4138 BtuD ABC-type cobalami 99.9 1.5E-22 3.2E-27 150.6 3.6 161 2-167 25-215 (248)
359 cd03279 ABC_sbcCD SbcCD and ot 99.9 7E-22 1.5E-26 153.2 7.4 158 1-162 27-211 (213)
360 TIGR01271 CFTR_protein cystic 99.9 1.7E-21 3.8E-26 185.1 11.1 156 1-165 1244-1432(1490)
361 PTZ00243 ABC transporter; Prov 99.9 2.3E-21 5E-26 184.7 10.7 160 1-169 685-866 (1560)
362 COG4172 ABC-type uncharacteriz 99.9 2.1E-21 4.6E-26 159.9 8.8 166 1-172 35-246 (534)
363 COG4615 PvdE ABC-type sideroph 99.8 1.1E-21 2.3E-26 161.3 6.5 156 1-163 348-527 (546)
364 cd03272 ABC_SMC3_euk Eukaryoti 99.8 1.8E-20 4E-25 147.5 13.0 154 2-161 23-237 (243)
365 PLN03130 ABC transporter C fam 99.8 3.1E-21 6.8E-26 184.2 9.6 160 1-168 642-823 (1622)
366 COG4778 PhnL ABC-type phosphon 99.8 3E-21 6.6E-26 143.0 7.3 151 2-159 37-227 (235)
367 KOG0055 Multidrug/pheromone ex 99.8 2.6E-20 5.7E-25 169.9 10.5 160 1-168 1015-1208(1228)
368 PLN03232 ABC transporter C fam 99.8 2.9E-20 6.2E-25 177.0 10.1 159 1-168 642-823 (1495)
369 cd03240 ABC_Rad50 The catalyti 99.8 2.1E-20 4.5E-25 144.2 7.1 151 4-161 24-199 (204)
370 cd03273 ABC_SMC2_euk Eukaryoti 99.8 1.1E-19 2.5E-24 144.0 9.8 151 2-158 25-242 (251)
371 COG4136 ABC-type uncharacteriz 99.8 3.6E-19 7.7E-24 129.7 10.9 147 1-156 27-206 (213)
372 COG1245 Predicted ATPase, RNas 99.8 7.4E-20 1.6E-24 152.6 7.8 155 1-165 366-537 (591)
373 cd03271 ABC_UvrA_II The excisi 99.8 4.6E-19 1E-23 141.3 10.8 98 61-165 151-258 (261)
374 cd03275 ABC_SMC1_euk Eukaryoti 99.8 3.9E-19 8.5E-24 140.7 10.4 154 4-162 24-236 (247)
375 cd03274 ABC_SMC4_euk Eukaryoti 99.8 1.2E-19 2.6E-24 140.7 5.9 75 81-161 130-206 (212)
376 COG1129 MglA ABC-type sugar tr 99.8 1.4E-18 3E-23 147.9 12.5 156 1-163 284-480 (500)
377 KOG0062 ATPase component of AB 99.8 1E-19 2.2E-24 153.3 2.4 154 2-171 106-283 (582)
378 KOG0927 Predicted transporter 99.8 7.5E-19 1.6E-23 148.9 6.2 160 2-171 416-594 (614)
379 KOG0056 Heavy metal exporter H 99.7 6.7E-18 1.5E-22 142.2 9.4 153 1-161 563-749 (790)
380 cd03283 ABC_MutS-like MutS-lik 99.7 4.9E-18 1.1E-22 130.5 7.6 129 2-150 25-154 (199)
381 KOG0054 Multidrug resistance-a 99.7 1.8E-17 4E-22 154.0 11.6 155 1-163 1165-1352(1381)
382 KOG0054 Multidrug resistance-a 99.7 9.9E-18 2.1E-22 155.8 9.8 161 1-169 546-727 (1381)
383 cd03276 ABC_SMC6_euk Eukaryoti 99.7 5.8E-17 1.3E-21 124.5 12.2 72 81-159 112-190 (198)
384 COG1245 Predicted ATPase, RNas 99.7 1.2E-17 2.6E-22 139.5 7.9 154 1-164 99-293 (591)
385 cd03280 ABC_MutS2 MutS2 homolo 99.7 2.3E-17 5.1E-22 126.7 8.9 135 2-165 27-171 (200)
386 KOG0927 Predicted transporter 99.7 1.7E-17 3.7E-22 140.7 8.2 163 2-173 101-309 (614)
387 TIGR02858 spore_III_AA stage I 99.7 5.8E-17 1.3E-21 129.8 10.5 127 3-161 112-259 (270)
388 COG5265 ATM1 ABC-type transpor 99.7 5.7E-17 1.2E-21 134.3 8.8 151 2-163 289-476 (497)
389 KOG1533 Predicted GTPase [Gene 99.7 1.6E-16 3.5E-21 122.7 10.0 159 5-167 5-163 (290)
390 cd03243 ABC_MutS_homologs The 99.7 6.5E-17 1.4E-21 124.4 5.8 142 1-166 28-172 (202)
391 cd03239 ABC_SMC_head The struc 99.6 9.3E-16 2E-20 116.0 9.1 78 80-162 96-175 (178)
392 KOG0065 Pleiotropic drug resis 99.6 6.8E-17 1.5E-21 148.2 3.0 159 1-165 816-1013(1391)
393 PRK00635 excinuclease ABC subu 99.6 1.6E-15 3.4E-20 144.4 12.0 72 80-158 811-885 (1809)
394 TIGR00630 uvra excinuclease AB 99.6 2.1E-15 4.5E-20 137.5 11.9 81 80-165 830-917 (924)
395 cd03227 ABC_Class2 ABC-type Cl 99.6 1.7E-15 3.7E-20 112.7 9.0 133 3-161 22-157 (162)
396 KOG1534 Putative transcription 99.6 4.3E-15 9.3E-20 113.3 11.1 149 2-152 3-151 (273)
397 COG4170 SapD ABC-type antimicr 99.6 2.5E-16 5.5E-21 120.7 4.4 158 1-164 32-239 (330)
398 cd03277 ABC_SMC5_euk Eukaryoti 99.6 2.6E-15 5.6E-20 116.6 9.6 73 83-161 131-211 (213)
399 PRK00349 uvrA excinuclease ABC 99.6 4.2E-15 9.1E-20 135.8 12.1 72 80-158 832-906 (943)
400 PF03029 ATP_bind_1: Conserved 99.6 2.6E-16 5.6E-21 124.0 3.5 143 7-152 1-143 (238)
401 cd03282 ABC_MSH4_euk MutS4 hom 99.6 5.9E-15 1.3E-19 113.9 9.0 128 2-151 29-158 (204)
402 COG4178 ABC-type uncharacteriz 99.6 5.1E-15 1.1E-19 128.5 9.4 137 1-146 418-576 (604)
403 KOG2355 Predicted ABC-type tra 99.6 5.8E-15 1.3E-19 112.7 8.6 159 2-168 40-232 (291)
404 COG3845 ABC-type uncharacteriz 99.6 2.5E-14 5.4E-19 120.6 10.3 156 1-163 283-482 (501)
405 cd03285 ABC_MSH2_euk MutS2 hom 99.5 7.7E-15 1.7E-19 114.6 6.2 137 1-162 29-170 (222)
406 cd03281 ABC_MSH5_euk MutS5 hom 99.5 3.7E-14 8.1E-19 110.1 9.6 125 3-151 30-161 (213)
407 COG2401 ABC-type ATPase fused 99.5 3.4E-14 7.5E-19 118.0 9.3 157 1-163 408-588 (593)
408 KOG0062 ATPase component of AB 99.5 1.5E-14 3.2E-19 122.4 7.2 147 4-164 392-559 (582)
409 KOG0066 eIF2-interacting prote 99.5 1.9E-14 4.1E-19 120.4 7.7 135 2-150 613-767 (807)
410 smart00534 MUTSac ATPase domai 99.5 2.2E-14 4.8E-19 108.9 7.0 126 4-152 1-129 (185)
411 KOG0066 eIF2-interacting prote 99.5 5E-15 1.1E-19 123.8 2.6 83 83-174 417-500 (807)
412 cd03284 ABC_MutS1 MutS1 homolo 99.5 6.6E-14 1.4E-18 108.9 8.2 130 3-155 31-163 (216)
413 cd03287 ABC_MSH3_euk MutS3 hom 99.4 6E-13 1.3E-17 103.9 9.0 125 1-148 30-158 (222)
414 cd03241 ABC_RecN RecN ATPase i 99.4 6.1E-13 1.3E-17 107.0 7.5 73 83-161 175-249 (276)
415 KOG0063 RNAse L inhibitor, ABC 99.3 2.3E-12 5E-17 107.5 7.2 152 3-162 368-535 (592)
416 TIGR01069 mutS2 MutS2 family p 99.3 3.2E-12 6.9E-17 115.4 7.3 120 3-147 323-448 (771)
417 PRK08533 flagellar accessory p 99.3 7.2E-12 1.6E-16 98.4 6.7 37 1-37 23-60 (230)
418 KOG0064 Peroxisomal long-chain 99.3 1.1E-11 2.4E-16 105.6 7.6 132 2-147 508-672 (728)
419 TIGR02788 VirB11 P-type DNA tr 99.3 4E-12 8.7E-17 103.8 4.6 125 2-160 144-268 (308)
420 KOG0060 Long-chain acyl-CoA tr 99.3 3.2E-11 6.9E-16 103.7 9.7 148 1-160 460-642 (659)
421 PRK07721 fliI flagellum-specif 99.3 3.5E-11 7.5E-16 102.3 9.8 139 1-168 157-338 (438)
422 PRK13695 putative NTPase; Prov 99.2 9.6E-12 2.1E-16 93.4 5.0 145 4-159 2-150 (174)
423 COG3910 Predicted ATPase [Gene 99.2 1.7E-10 3.8E-15 87.1 10.5 150 3-160 38-204 (233)
424 cd03286 ABC_MSH6_euk MutS6 hom 99.2 3.4E-11 7.3E-16 93.8 6.4 50 98-151 109-160 (218)
425 cd01131 PilT Pilus retraction 99.2 9.7E-11 2.1E-15 89.9 8.6 121 4-160 3-124 (198)
426 PRK00635 excinuclease ABC subu 99.2 2.3E-10 5E-15 109.8 11.9 93 61-159 1681-1776(1809)
427 cd01120 RecA-like_NTPases RecA 99.2 4.8E-11 1E-15 87.1 5.6 132 4-149 1-142 (165)
428 KOG0063 RNAse L inhibitor, ABC 99.1 8.3E-11 1.8E-15 98.3 6.0 156 1-163 99-292 (592)
429 PF02463 SMC_N: RecF/RecN/SMC 99.1 1.4E-09 3E-14 84.4 12.5 57 92-154 152-208 (220)
430 PRK00409 recombination and DNA 99.1 1E-10 2.2E-15 105.9 6.9 130 2-156 327-462 (782)
431 KOG1532 GTPase XAB1, interacts 99.1 3.4E-10 7.3E-15 89.9 8.6 139 4-145 21-161 (366)
432 cd01130 VirB11-like_ATPase Typ 99.1 5.6E-10 1.2E-14 84.8 9.4 37 1-37 24-60 (186)
433 PTZ00132 GTP-binding nuclear p 99.1 2.7E-10 5.8E-15 88.0 7.1 43 83-127 157-204 (215)
434 PRK13768 GTPase; Provisional 99.1 4.2E-09 9E-14 83.8 13.5 138 1-141 1-138 (253)
435 cd03242 ABC_RecF RecF is a rec 99.1 1.5E-10 3.2E-15 92.9 4.2 71 83-161 188-268 (270)
436 COG0178 UvrA Excinuclease ATPa 99.0 1.9E-09 4E-14 96.0 10.5 68 83-155 827-895 (935)
437 cd01124 KaiC KaiC is a circadi 99.0 5.3E-10 1.2E-14 84.2 6.2 59 98-160 95-165 (187)
438 TIGR03238 dnd_assoc_3 dnd syst 99.0 4.8E-10 1E-14 95.5 4.4 38 1-40 31-69 (504)
439 cd00820 PEPCK_HprK Phosphoenol 99.0 8.2E-10 1.8E-14 76.6 4.4 34 1-40 14-47 (107)
440 PRK00349 uvrA excinuclease ABC 99.0 1.5E-09 3.2E-14 99.8 7.2 99 62-167 472-579 (943)
441 KOG0065 Pleiotropic drug resis 98.9 1.4E-09 3.1E-14 100.9 6.3 163 1-168 140-346 (1391)
442 TIGR00630 uvra excinuclease AB 98.9 2.2E-09 4.7E-14 98.5 7.0 81 80-167 489-577 (924)
443 TIGR01420 pilT_fam pilus retra 98.9 1.3E-08 2.9E-13 84.3 10.2 122 2-159 122-244 (343)
444 PRK06067 flagellar accessory p 98.9 2.1E-08 4.5E-13 78.6 10.8 36 1-37 24-60 (234)
445 smart00382 AAA ATPases associa 98.9 1E-08 2.3E-13 71.9 8.2 30 1-30 1-30 (148)
446 PRK10416 signal recognition pa 98.8 2.7E-08 5.7E-13 81.7 9.1 40 1-40 113-152 (318)
447 PRK10078 ribose 1,5-bisphospho 98.8 7.4E-09 1.6E-13 78.5 4.6 35 1-38 1-35 (186)
448 PRK09825 idnK D-gluconate kina 98.8 1.3E-08 2.8E-13 76.8 5.4 36 1-40 2-37 (176)
449 PRK09270 nucleoside triphospha 98.8 6.9E-09 1.5E-13 81.3 3.7 33 2-34 33-65 (229)
450 TIGR00235 udk uridine kinase. 98.7 9.7E-09 2.1E-13 79.2 3.9 28 1-28 5-32 (207)
451 TIGR00554 panK_bact pantothena 98.7 9.7E-09 2.1E-13 83.2 4.0 37 3-39 63-101 (290)
452 PRK06793 fliI flagellum-specif 98.7 1.4E-08 3E-13 86.2 5.0 39 1-39 155-193 (432)
453 cd01128 rho_factor Transcripti 98.7 1.2E-07 2.7E-12 75.2 10.0 68 84-162 143-211 (249)
454 PRK00300 gmk guanylate kinase; 98.7 1.1E-08 2.4E-13 78.4 3.8 27 1-27 4-30 (205)
455 PF13304 AAA_21: AAA domain; P 98.7 3.8E-08 8.2E-13 75.7 6.3 23 4-26 1-23 (303)
456 PRK05399 DNA mismatch repair p 98.7 9.9E-08 2.1E-12 87.5 9.5 51 97-152 685-737 (854)
457 PRK13830 conjugal transfer pro 98.7 2.9E-07 6.2E-12 84.2 12.2 62 97-162 651-722 (818)
458 TIGR01026 fliI_yscN ATPase Fli 98.7 5.3E-08 1.1E-12 83.1 6.6 39 1-39 162-200 (440)
459 TIGR03881 KaiC_arch_4 KaiC dom 98.6 3.1E-08 6.8E-13 77.2 4.6 38 1-38 19-57 (229)
460 PF13555 AAA_29: P-loop contai 98.6 2.7E-08 5.7E-13 62.2 3.3 29 2-30 23-51 (62)
461 cd02025 PanK Pantothenate kina 98.6 3.9E-08 8.4E-13 76.8 3.5 32 4-35 1-34 (220)
462 PRK04296 thymidine kinase; Pro 98.6 2.5E-07 5.4E-12 70.6 7.4 36 1-36 1-36 (190)
463 TIGR02322 phosphon_PhnN phosph 98.6 7.7E-08 1.7E-12 72.2 4.3 33 2-35 1-33 (179)
464 TIGR00416 sms DNA repair prote 98.6 3.4E-07 7.3E-12 78.6 8.7 137 1-162 93-248 (454)
465 PRK06995 flhF flagellar biosyn 98.5 6.9E-08 1.5E-12 83.1 4.4 37 1-37 255-293 (484)
466 PLN02318 phosphoribulokinase/u 98.5 1.4E-07 2.9E-12 82.7 5.8 36 4-40 67-102 (656)
467 PLN03210 Resistant to P. syrin 98.5 3.4E-07 7.3E-12 86.6 8.6 36 2-37 207-243 (1153)
468 cd02023 UMPK Uridine monophosp 98.5 9.3E-08 2E-12 73.0 3.8 33 4-38 1-33 (198)
469 PRK06002 fliI flagellum-specif 98.5 1.2E-07 2.5E-12 80.9 4.6 38 1-38 164-201 (450)
470 PRK13898 type IV secretion sys 98.5 1.4E-06 3.1E-11 79.6 11.8 49 97-149 641-690 (800)
471 PLN02796 D-glycerate 3-kinase 98.5 1E-07 2.2E-12 78.6 3.8 37 4-40 102-141 (347)
472 cd00009 AAA The AAA+ (ATPases 98.5 4.5E-07 9.8E-12 64.2 6.6 27 2-28 19-45 (151)
473 TIGR03263 guanyl_kin guanylate 98.5 1.4E-07 3E-12 70.7 4.1 27 2-28 1-27 (180)
474 TIGR02524 dot_icm_DotB Dot/Icm 98.5 6.2E-07 1.3E-11 74.8 8.1 27 1-27 133-159 (358)
475 cd02026 PRK Phosphoribulokinas 98.5 1.3E-07 2.9E-12 76.0 3.8 32 4-35 1-32 (273)
476 PRK13764 ATPase; Provisional 98.5 1.3E-06 2.7E-11 77.1 10.0 120 3-162 258-392 (602)
477 cd01136 ATPase_flagellum-secre 98.4 3.4E-07 7.3E-12 75.3 5.2 39 1-39 68-106 (326)
478 PF00488 MutS_V: MutS domain V 98.4 2.9E-06 6.3E-11 66.9 10.2 46 98-147 122-169 (235)
479 PRK05480 uridine/cytidine kina 98.4 3.6E-07 7.7E-12 70.4 4.7 35 1-37 5-39 (209)
480 cd01125 repA Hexameric Replica 98.4 1.8E-06 3.8E-11 68.0 8.6 22 2-23 1-22 (239)
481 TIGR01360 aden_kin_iso1 adenyl 98.4 1.8E-07 3.9E-12 70.4 2.6 34 2-35 3-39 (188)
482 PRK01889 GTPase RsgA; Reviewed 98.4 3.2E-07 7E-12 76.4 4.3 38 1-38 194-231 (356)
483 TIGR03015 pepcterm_ATPase puta 98.4 4.3E-06 9.4E-11 66.4 10.4 88 3-107 44-132 (269)
484 PRK00098 GTPase RsgA; Reviewed 98.4 3.6E-07 7.8E-12 74.4 4.3 35 1-35 163-197 (298)
485 PRK14722 flhF flagellar biosyn 98.4 1.3E-06 2.8E-11 73.2 7.6 28 1-28 136-163 (374)
486 TIGR03498 FliI_clade3 flagella 98.4 4.1E-07 9E-12 77.1 4.7 40 1-40 139-178 (418)
487 PRK14723 flhF flagellar biosyn 98.4 2E-06 4.4E-11 77.5 9.1 38 2-39 185-224 (767)
488 cd01121 Sms Sms (bacterial rad 98.4 1.5E-06 3.3E-11 72.8 7.7 38 1-38 81-119 (372)
489 TIGR02655 circ_KaiC circadian 98.4 3.5E-06 7.6E-11 73.0 10.1 146 1-158 20-190 (484)
490 cd01854 YjeQ_engC YjeQ/EngC. 98.4 3.6E-07 7.9E-12 74.0 3.8 34 2-35 161-194 (287)
491 PLN03046 D-glycerate 3-kinase; 98.4 3.8E-07 8.3E-12 77.0 3.9 38 3-40 213-253 (460)
492 PRK07196 fliI flagellum-specif 98.3 4.6E-07 9.9E-12 77.1 4.3 33 1-33 154-186 (434)
493 PRK03846 adenylylsulfate kinas 98.3 4.8E-07 1E-11 69.3 4.0 41 1-41 23-64 (198)
494 PRK14721 flhF flagellar biosyn 98.3 4.1E-07 8.8E-12 77.2 3.7 26 1-26 190-215 (420)
495 cd01129 PulE-GspE PulE/GspE Th 98.3 4.9E-06 1.1E-10 66.7 9.6 27 2-28 80-106 (264)
496 PRK07594 type III secretion sy 98.3 5.7E-07 1.2E-11 76.5 4.3 39 1-39 154-192 (433)
497 TIGR03880 KaiC_arch_3 KaiC dom 98.3 3.6E-06 7.9E-11 65.4 8.4 57 98-158 107-177 (224)
498 cd04155 Arl3 Arl3 subfamily. 98.3 7.8E-07 1.7E-11 65.8 4.4 28 4-31 16-47 (173)
499 PF06414 Zeta_toxin: Zeta toxi 98.3 2.2E-05 4.8E-10 60.1 12.5 114 3-140 16-129 (199)
500 PRK09099 type III secretion sy 98.3 7.9E-07 1.7E-11 75.8 4.9 39 1-39 162-200 (441)
No 1
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.8e-35 Score=233.16 Aligned_cols=161 Identities=19% Similarity=0.188 Sum_probs=126.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc-------cCCcccccc--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV-------AMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~-------~~~~~~~~~-------- 58 (175)
+||+++|+||||||||||+|+|+|+++|.+|+|.++|+++.. +.++|.+ .+++.+.+.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 599999999999999999999999999999999999987532 1222222 222222221
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
...+++.+++.....+....-+..|+|+.|+|+++++ +|++++||||+...+..++..++++++++
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ--~~~iLLLDEPTs~LDi~~Q~evl~ll~~l 184 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQ--ETPILLLDEPTSHLDIAHQIEVLELLRDL 184 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhc--CCCEEEeCCCccccCHHHHHHHHHHHHHH
Confidence 2344666666544333332223349999999999999 99999999997777777888889999999
Q ss_pred H-hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 127 K-SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~-~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+ ++|.|| ++++||+..+..+||++++|..|..+.+++
T Consensus 185 ~~~~~~tv----v~vlHDlN~A~ryad~~i~lk~G~i~a~G~ 222 (258)
T COG1120 185 NREKGLTV----VMVLHDLNLAARYADHLILLKDGKIVAQGT 222 (258)
T ss_pred HHhcCCEE----EEEecCHHHHHHhCCEEEEEECCeEEeecC
Confidence 7 569999 999999999999999999999998887765
No 2
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-35 Score=229.91 Aligned_cols=154 Identities=16% Similarity=0.198 Sum_probs=120.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----ccCCCCcc---------CCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDYPVA---------MDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----~~~~~~~~---------~~~~~~~~--------- 58 (175)
+|++++|+||||||||||+|+|+|+++|++|+|.+.|++... ..++|+|. .++++.+.
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 599999999999999999999999999999999999876432 23455542 23333322
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++.....+....-+-.|+||.+|||++++ +|++++||||....+......+.++|++++
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~--~p~lllLDEP~~gvD~~~~~~i~~lL~~l~ 186 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQ--NPDLLLLDEPFTGVDVAGQKEIYDLLKELR 186 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhcc--CCCEEEecCCcccCCHHHHHHHHHHHHHHH
Confidence 3456677777654333332223349999999999999 999999999966666666777888999999
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeEeccc
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
++|+|| +++|||+..+.+++|+++++..+
T Consensus 187 ~eg~tI----l~vtHDL~~v~~~~D~vi~Ln~~ 215 (254)
T COG1121 187 QEGKTV----LMVTHDLGLVMAYFDRVICLNRH 215 (254)
T ss_pred HCCCEE----EEEeCCcHHhHhhCCEEEEEcCe
Confidence 889999 99999999999999999887654
No 3
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-35 Score=221.74 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=122.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccccc------C-------CCCccCCccccccH--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAEN------F-------DYPVAMDIRELISL-------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~------~-------~~~~~~~~~~~~~~-------- 59 (175)
+||++||+|||||||||++|+|++++.|++|+|+++|.+..++. + +++..++.++++.+
T Consensus 27 ~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~ 106 (245)
T COG4555 27 EGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLS 106 (245)
T ss_pred cceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhh
Confidence 59999999999999999999999999999999999998864422 2 23333455555431
Q ss_pred --------HHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC
Q 030541 60 --------EDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 60 --------~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
..+.+.+++.....+ ....+| ++|+..+||++.+ +|++++||||+...+...+..+.+++++++++
T Consensus 107 ~~~~kari~~l~k~l~l~~~~~r--Rv~~~S~G~kqkV~iARAlvh--~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~e 182 (245)
T COG4555 107 RKEIKARIAELSKRLQLLEYLDR--RVGEFSTGMKQKVAIARALVH--DPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE 182 (245)
T ss_pred hhHHHHHHHHHHHHhChHHHHHH--HHhhhchhhHHHHHHHHHHhc--CCCeEEEcCCCCCccHHHHHHHHHHHHHhhcC
Confidence 233344444332222 223334 8899999999999 99999999995555555567788899999999
Q ss_pred CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
|++| +++||.|+|++.+||++++++.|++|.-.
T Consensus 183 gr~v----iFSSH~m~EvealCDrvivlh~Gevv~~g 215 (245)
T COG4555 183 GRAV----IFSSHIMQEVEALCDRVIVLHKGEVVLEG 215 (245)
T ss_pred CcEE----EEecccHHHHHHhhheEEEEecCcEEEcC
Confidence 9999 99999999999999999999999987643
No 4
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.6e-35 Score=225.97 Aligned_cols=155 Identities=17% Similarity=0.161 Sum_probs=114.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccc--cCCCCccCCccccccHHHHHHHhCCCCC-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--NFDYPVAMDIRELISLEDVMEELGLGPN------- 71 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~------- 71 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++... +.++.+ |....++..++.+|+.++..
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vF--Q~~~LlPW~Tv~~NV~l~l~~~~~~~~ 105 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVF--QEDALLPWLTVLDNVALGLELRGKSKA 105 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEe--ccCcccchhhHHhhheehhhccccchH
Confidence 5999999999999999999999999999999999999876332 334444 44445555555555444432
Q ss_pred ------------------CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCC-CcccccccchhHHHHHHH-HHhCCC
Q 030541 72 ------------------GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCP-GQIELFTHVPVLRNFVDH-LKSRNF 131 (175)
Q Consensus 72 ------------------~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP-~~~~~~~~~~~~~~~l~~-l~~~g~ 131 (175)
.......-+..|+||.+|+|+++. +|++|+|||| +..+..+ +..+++.+.+ ++++++
T Consensus 106 e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~--~P~lLLlDEPFgALDalT-R~~lq~~l~~lw~~~~~ 182 (248)
T COG1116 106 EARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALAT--RPKLLLLDEPFGALDALT-REELQDELLRLWEETRK 182 (248)
T ss_pred hHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhc--CCCEEEEcCCcchhhHHH-HHHHHHHHHHHHHhhCC
Confidence 211111112338999999999999 9999999999 3333222 2334444444 567799
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhhH
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
|| +++||+++|+-.++||+++|.+++..+
T Consensus 183 Tv----llVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 183 TV----LLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred EE----EEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 99 999999999999999999999987443
No 5
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-34 Score=220.30 Aligned_cols=161 Identities=16% Similarity=0.153 Sum_probs=123.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcc--------cccCCCCccCCccccccHHH-----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDYPVAMDIRELISLED----------- 61 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~--------~~~~~~~~~~~~~~~~~~~~----------- 61 (175)
+||+++|+||||||||||+|||.+|.+|++|+|.++|.++. ++.++.++ +.++.|+..+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVF--Q~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVF--QQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeec--ccccccccchHHHHHHhhhHH
Confidence 59999999999999999999999999999999999996542 12344444 4444444433
Q ss_pred ---------------HHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 62 ---------------VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 62 ---------------~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
.++.+++..........-+-.|+||.+|||+++- +|+++++|||+...+-.-...+.+.++++
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM--~P~vmLFDEPTSALDPElv~EVL~vm~~L 182 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM--DPKVMLFDEPTSALDPELVGEVLDVMKDL 182 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcC--CCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence 4444454443222211122338999999999999 99999999994444444445667789999
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhhh
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYS 169 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (175)
+++|.|. +++||+|..+.+.+||++.|+.|..+-+++-.
T Consensus 183 A~eGmTM----ivVTHEM~FAr~VadrviFmd~G~iie~g~p~ 221 (240)
T COG1126 183 AEEGMTM----IIVTHEMGFAREVADRVIFMDQGKIIEEGPPE 221 (240)
T ss_pred HHcCCeE----EEEechhHHHHHhhheEEEeeCCEEEEecCHH
Confidence 9999999 99999999999999999999999777765433
No 6
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.8e-34 Score=231.65 Aligned_cols=161 Identities=16% Similarity=0.164 Sum_probs=130.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------------ccCCCCccCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------------~~~~~~~~~~~~~~~~--------- 58 (175)
+|+++||+||||||||||+|+|+|+++|++|+|.++|.++.. +...+++.+++++++.
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~ 109 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS 109 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC
Confidence 599999999999999999999999999999999999977532 1223444555555543
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCC-
Q 030541 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRN- 130 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g- 130 (175)
..++++.+++...........+..++||..++.++.. +|+++|||||+...+...+..++++|++++++|
T Consensus 110 ~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~ 187 (293)
T COG1131 110 KEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLH--DPELLILDEPTSGLDPESRREIWELLRELAKEGG 187 (293)
T ss_pred hhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC
Confidence 2356777777763222233344559999999999999 999999999977766777788899999998877
Q ss_pred CcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 131 FNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 131 ~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.|| +++||.+++++.+||++++++.|..+..+.
T Consensus 188 ~tv----lissH~l~e~~~~~d~v~il~~G~~~~~g~ 220 (293)
T COG1131 188 VTI----LLSTHILEEAEELCDRVIILNDGKIIAEGT 220 (293)
T ss_pred cEE----EEeCCcHHHHHHhCCEEEEEeCCEEEEeCC
Confidence 799 999999999999999999999998887654
No 7
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.6e-33 Score=228.14 Aligned_cols=161 Identities=17% Similarity=0.111 Sum_probs=124.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc------ccCCC-------CccCCccccccH--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELISL-------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~-------~~~~~~~~~~~~-------- 59 (175)
+||++||+||||||||||+|+|+|+++|++|+|.++|.++.. +.++| .+.+++.+++..
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 111 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS 111 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCC
Confidence 599999999999999999999999999999999999987532 12222 233344444321
Q ss_pred --------HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCC
Q 030541 60 --------EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 60 --------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
.++++.+++..........-+..++||..+++++.. +|++++||||+...+..++..+++++++++++|.
T Consensus 112 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~--~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~ 189 (306)
T PRK13537 112 AAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN--DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGK 189 (306)
T ss_pred HHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC
Confidence 234445555432222222223348999999999999 9999999999777777778888999999987899
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|| +++||++++++++||+++++..|..+..++
T Consensus 190 ti----ll~sH~l~e~~~~~d~i~il~~G~i~~~g~ 221 (306)
T PRK13537 190 TI----LLTTHFMEEAERLCDRLCVIEEGRKIAEGA 221 (306)
T ss_pred EE----EEECCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99 999999999999999999999887765543
No 8
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=7.4e-33 Score=215.50 Aligned_cols=156 Identities=20% Similarity=0.237 Sum_probs=125.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------------ccCCCCccCCcccccc--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------------~~~~~~~~~~~~~~~~-------- 58 (175)
+||+++++|||||||||++|+|.++++|++|+|.++|+++.. +.+++.|.+++.+++.
T Consensus 26 ~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w 105 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGW 105 (309)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCC
Confidence 599999999999999999999999999999999999988643 3456667777777664
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCC-CcccccccchhHHHHHHHHH
Q 030541 59 --------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCP-GQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 --------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP-~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++.+.....+...++| |+||.-++||++. +|+++++||| +..+-. .+..+++.+++++
T Consensus 106 ~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAa--dP~ilLMDEPFgALDpI-~R~~lQ~e~~~lq 182 (309)
T COG1125 106 DKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAA--DPPILLMDEPFGALDPI-TRKQLQEEIKELQ 182 (309)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhc--CCCeEeecCCccccChh-hHHHHHHHHHHHH
Confidence 356777788876433333344555 8999999999999 9999999999 222222 2445666778876
Q ss_pred h-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 128 S-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 128 ~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+ -|+|| +++|||++|+.+++|++.+|..|+.+
T Consensus 183 ~~l~kTi----vfVTHDidEA~kLadri~vm~~G~i~ 215 (309)
T COG1125 183 KELGKTI----VFVTHDIDEALKLADRIAVMDAGEIV 215 (309)
T ss_pred HHhCCEE----EEEecCHHHHHhhhceEEEecCCeEE
Confidence 5 49999 99999999999999999999988765
No 9
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.5e-32 Score=226.34 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=123.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc------ccCCC-------CccCCccccccH--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELISL-------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~-------~~~~~~~~~~~~-------- 59 (175)
+||++||+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++ .+.+++.+++..
T Consensus 66 ~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 145 (340)
T PRK13536 66 SGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS 145 (340)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCC
Confidence 599999999999999999999999999999999999986532 12222 223344443321
Q ss_pred --------HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCC
Q 030541 60 --------EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 60 --------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
..+++.+++..........-+..++|+..++++++. +|+++|||||+...+...+..+++++++++++|.
T Consensus 146 ~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~--~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~ 223 (340)
T PRK13536 146 TREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALIN--DPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 223 (340)
T ss_pred HHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 133444555432222222233448999999999999 9999999999777777778888999999987899
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|| +++||++++++++||+++++..|..+.+++
T Consensus 224 ti----lisSH~l~e~~~~~d~i~il~~G~i~~~g~ 255 (340)
T PRK13536 224 TI----LLTTHFMEEAERLCDRLCVLEAGRKIAEGR 255 (340)
T ss_pred EE----EEECCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99 999999999999999999999888775543
No 10
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.4e-32 Score=223.38 Aligned_cols=160 Identities=18% Similarity=0.134 Sum_probs=121.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc------ccCCCCc-------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYPV-------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~~-------~~~~~~~~~--------- 58 (175)
+||++||+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+ .+++.+++.
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 97 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLP 97 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 599999999999999999999999999999999999976421 1233332 233333322
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCC
Q 030541 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
..++++.+++..........-+..++||..+++++.. +|++++||||+...+...+..+++++++++++|.
T Consensus 98 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~ 175 (302)
T TIGR01188 98 KDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIH--QPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGV 175 (302)
T ss_pred HHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC
Confidence 1234555555432222222223348999999999999 9999999999777667777888889999987799
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
|| +++||+++++.++||+++++..|..+..+
T Consensus 176 tv----i~~sH~~~~~~~~~d~v~~l~~G~i~~~g 206 (302)
T TIGR01188 176 TI----LLTTHYMEEADKLCDRIAIIDHGRIIAEG 206 (302)
T ss_pred EE----EEECCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99 99999999999999999999988766443
No 11
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.98 E-value=2.3e-32 Score=222.86 Aligned_cols=155 Identities=20% Similarity=0.135 Sum_probs=118.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCc-----ccc-------cCCCCccCCcccccc----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----AAE-------NFDYPVAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~-----~~~-------~~~~~~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||||+|+|+.+|++|+|.++|.+. ..+ +..++|.+++++++.
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k 107 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPK 107 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCch
Confidence 4999999999999999999999999999999999999764 333 344555556665554
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-CC
Q 030541 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
..++.+.+++.....+....-+-.|+||.+++|++.. +|++++||||....+..-+..++..+++++++ |.
T Consensus 108 ~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr--~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~ 185 (338)
T COG3839 108 AEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVR--KPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGT 185 (338)
T ss_pred HHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhc--CCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCC
Confidence 1344555555443322222223348999999999999 99999999994444455555677788888654 89
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccch
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
|+ +++|||-.|+..++|++++|..|.
T Consensus 186 T~----IYVTHDq~EAmtladri~Vm~~G~ 211 (338)
T COG3839 186 TT----IYVTHDQVEAMTLADRIVVMNDGR 211 (338)
T ss_pred cE----EEEcCCHHHHHhhCCEEEEEeCCe
Confidence 99 999999999999999999999554
No 12
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=1.7e-32 Score=218.22 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=125.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCccccceEEEeec---C-----cccccCCCCccCCccccccHHHHHHHhCCCCCCc
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL---D-----PAAENFDYPVAMDIRELISLEDVMEELGLGPNGG 73 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (175)
||.++|+||||||||||+|+|+|+..|++|.|.++|. | .+.+++++.+ +.+..|+..++.+|+.|+....
T Consensus 28 Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvF--Q~YALF~HmtVa~NIAFGl~~~ 105 (345)
T COG1118 28 GELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVF--QHYALFPHMTVADNIAFGLKVR 105 (345)
T ss_pred CcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEE--echhhcccchHHhhhhhccccc
Confidence 8999999999999999999999999999999999998 4 3446777777 8888888888888888876432
Q ss_pred hhh-------------------------hHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 74 LIY-------------------------CMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 74 ~~~-------------------------~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
+.. ....+ .|+||.++||+++- +|++|+||||....+.+.+..++.-|+++
T Consensus 106 ~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~--eP~vLLLDEPf~ALDa~vr~~lr~wLr~~ 183 (345)
T COG1118 106 KERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAV--EPKVLLLDEPFGALDAKVRKELRRWLRKL 183 (345)
T ss_pred ccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhc--CCCeEeecCCchhhhHHHHHHHHHHHHHH
Confidence 100 01122 37899999999999 99999999995555555566777788888
Q ss_pred HhC-CCcEEEEeeeehhchhhhhcCCcceeEeccch
Q 030541 127 KSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 127 ~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
.++ |.|+ +++|||.+|+.+++|++++|..|.
T Consensus 184 ~~~~~~tt----vfVTHD~eea~~ladrvvvl~~G~ 215 (345)
T COG1118 184 HDRLGVTT----VFVTHDQEEALELADRVVVLNQGR 215 (345)
T ss_pred HHhhCceE----EEEeCCHHHHHhhcceEEEecCCe
Confidence 765 9999 999999999999999999999996
No 13
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=3.6e-32 Score=222.76 Aligned_cols=155 Identities=14% Similarity=0.070 Sum_probs=122.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCc-----ccccCCCCccCCccccccHHHHHHHhCCCCCCch-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----AAENFDYPVAMDIRELISLEDVMEELGLGPNGGL- 74 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 74 (175)
+||+++|+||||||||||||+|+|+.+|++|+|.++|+++ .++++++++ +.+..|+..+|.+|++++....+
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VF--Q~YALFPHltV~~NVafGLk~~~~ 107 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVF--QSYALFPHMTVEENVAFGLKVRKK 107 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceee--cCcccCCCCcHHHHhhhhhhhcCC
Confidence 5999999999999999999999999999999999999864 445666666 66666666666666666554111
Q ss_pred -----------------------hhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH-h
Q 030541 75 -----------------------IYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-S 128 (175)
Q Consensus 75 -----------------------~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-~ 128 (175)
.....++| |+||.+|||++.. +|++|+||||-...+.+-+..++..+++++ +
T Consensus 108 ~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~--~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~ 185 (352)
T COG3842 108 LKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVP--EPKVLLLDEPLSALDAKLREQMRKELKELQRE 185 (352)
T ss_pred CCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhc--CcchhhhcCcccchhHHHHHHHHHHHHHHHHh
Confidence 00123333 8899999999999 999999999944444555667777788875 4
Q ss_pred CCCcEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 129 RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 129 ~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
.|.|. +++|||-+|+..++|++++|..|...
T Consensus 186 ~giT~----i~VTHDqeEAl~msDrI~Vm~~G~I~ 216 (352)
T COG3842 186 LGITF----VYVTHDQEEALAMSDRIAVMNDGRIE 216 (352)
T ss_pred cCCeE----EEEECCHHHHhhhccceEEccCCcee
Confidence 59999 99999999999999999999987653
No 14
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.9e-32 Score=212.03 Aligned_cols=161 Identities=18% Similarity=0.165 Sum_probs=117.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccc------cCCCCccCCccccccHHHHHHH---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE------NFDYPVAMDIRELISLEDVMEE--------- 65 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--------- 65 (175)
+||+++||||||||||||+++|+|.++|++|+|.+.|.++... ..+....+|....|+..+++|+
T Consensus 29 ~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~ 108 (250)
T COG0411 29 PGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARL 108 (250)
T ss_pred CCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhh
Confidence 5999999999999999999999999999999999999876331 1122222233333333333333
Q ss_pred ----------------------------hCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccch
Q 030541 66 ----------------------------LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVP 117 (175)
Q Consensus 66 ----------------------------~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~ 117 (175)
+++..........-...++.+..++++++. +|++|+||||+...-....+
T Consensus 109 ~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~--~P~lLLLDEPaAGln~~e~~ 186 (250)
T COG0411 109 GLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALAT--QPKLLLLDEPAAGLNPEETE 186 (250)
T ss_pred hhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhc--CCCEEEecCccCCCCHHHHH
Confidence 333332211111112235566788999999 99999999995554455556
Q ss_pred hHHHHHHHHHh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 118 VLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 118 ~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.+.++++++++ .|.|| +++-|+|..+.++||++++|..|.++-+++
T Consensus 187 ~l~~~i~~i~~~~g~ti----llIEHdM~~Vm~l~dri~Vl~~G~~IAeG~ 233 (250)
T COG0411 187 ELAELIRELRDRGGVTI----LLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233 (250)
T ss_pred HHHHHHHHHHhcCCcEE----EEEEeccHHHhhhccEEEeccCCcCcccCC
Confidence 77789999987 46999 999999999999999999999998876654
No 15
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=1.4e-31 Score=207.32 Aligned_cols=153 Identities=18% Similarity=0.150 Sum_probs=118.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcc-----------c-------ccCCCCccCCcccccc----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------A-------ENFDYPVAMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----------~-------~~~~~~~~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+++|.|+.+|++|+|.++|.+.. . |+..+.+.+++.+++.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~ 109 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLL 109 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHH
Confidence 59999999999999999999999999999999999996642 1 2333444555555544
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHH
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
...+++.+++........ ..++| |+||.++||+++. +|++++.|||+...+....+.+.++++
T Consensus 110 ~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~-p~eLSGGqqQRVAIARAL~~--~P~iilADEPTgnLD~~t~~~V~~ll~ 186 (226)
T COG1136 110 IAGKSAGRRKRAAEELLEVLGLEDRLLKKK-PSELSGGQQQRVAIARALIN--NPKIILADEPTGNLDSKTAKEVLELLR 186 (226)
T ss_pred HcCCChhHHHHHHHHHHHhcCChhhhccCC-chhcCHHHHHHHHHHHHHhc--CCCeEEeeCccccCChHHHHHHHHHHH
Confidence 123444456654332121 23444 9999999999999 999999999977777777888888999
Q ss_pred HHHh-CCCcEEEEeeeehhchhhhhcCCcceeEeccch
Q 030541 125 HLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 125 ~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
++++ .|.|+ +++||+.+.+ .+|||++.+..|.
T Consensus 187 ~~~~~~g~ti----i~VTHd~~lA-~~~dr~i~l~dG~ 219 (226)
T COG1136 187 ELNKERGKTI----IMVTHDPELA-KYADRVIELKDGK 219 (226)
T ss_pred HHHHhcCCEE----EEEcCCHHHH-HhCCEEEEEeCCe
Confidence 9865 48999 9999997755 6999998888775
No 16
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.97 E-value=8.6e-32 Score=207.27 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=117.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----ccCCCCc--------cCCcccccc----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDYPV--------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----~~~~~~~--------~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. +.++|.+ ..++.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~ 104 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGN 104 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccH
Confidence 599999999999999999999999999999999999976421 1222222 112222221
Q ss_pred --HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEE
Q 030541 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (175)
Q Consensus 59 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~ 136 (175)
..++++.+++..........-+..++||..+++++.. +|++++||||....+...++.+.+++++++++|.|+
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti--- 179 (205)
T cd03226 105 EQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLS--GKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAV--- 179 (205)
T ss_pred HHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEE---
Confidence 2234555555433222222223348999999999999 999999999977766777788888999987778999
Q ss_pred eeeehhchhhhhcCCcceeEeccchh
Q 030541 137 YLLDSQVCIRFRTLPPCIVCFCCTHT 162 (175)
Q Consensus 137 ~l~~sH~~~~~~~~~~~~~~~~~~~~ 162 (175)
+++||+++++.++||+++++..+..
T Consensus 180 -i~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 180 -IVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred -EEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999988754
No 17
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.97 E-value=1.3e-31 Score=207.76 Aligned_cols=155 Identities=13% Similarity=0.130 Sum_probs=115.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------ccCCCCc-------cCCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 107 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRI 107 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHh
Confidence 599999999999999999999999999999999999876421 1233322 123333221
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..++||..+++++.. +|++++||||....+....+.+.+++++++
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 185 (216)
T TIGR00960 108 IGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVH--KPPLLLADEPTGNLDPELSRDIMRLFEEFN 185 (216)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 1223444454332211111123348999999999999 999999999966666777778888999987
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeEeccch
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
++|.|| +++||+++++.++||+++++..|.
T Consensus 186 ~~~~ti----i~vsH~~~~~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 186 RRGTTV----LVATHDINLVETYRHRTLTLSRGR 215 (216)
T ss_pred HCCCEE----EEEeCCHHHHHHhCCEEEEEeCCc
Confidence 778999 999999999999999999998764
No 18
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.3e-32 Score=209.10 Aligned_cols=160 Identities=18% Similarity=0.147 Sum_probs=123.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccc--------cC---------CCCccCCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--------NF---------DYPVAMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~--------~~---------~~~~~~~~~~~~~----- 58 (175)
+||++||+|++|||||||.|+|+|+.+|++|+|.++|.+.... .+ .+.|..++++.+.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~ 111 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP 111 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc
Confidence 5999999999999999999999999999999999999653221 11 1222223222221
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 ---------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++...-..+.+ .++| |+||.+++||+.- +|++||+|||....+......+++++.+++
T Consensus 112 ~~~~~~~~~i~~~L~~VgL~~~~l~R~P-~eLSGGQ~QRiaIARAL~~--~PklLIlDEptSaLD~siQa~IlnlL~~l~ 188 (252)
T COG1124 112 HGLSKSQQRIAELLDQVGLPPSFLDRRP-HELSGGQRQRIAIARALIP--EPKLLILDEPTSALDVSVQAQILNLLLELK 188 (252)
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHhcCc-hhcChhHHHHHHHHHHhcc--CCCEEEecCchhhhcHHHHHHHHHHHHHHH
Confidence 3677888888765433333 3344 9999999999999 999999999955544555667778998886
Q ss_pred h-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 128 S-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+ .+.|. +++|||+.-+..+|||+++|++|..|-...
T Consensus 189 ~~~~lt~----l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~ 225 (252)
T COG1124 189 KERGLTY----LFISHDLALVEHMCDRIAVMDNGQIVEIGP 225 (252)
T ss_pred HhcCceE----EEEeCcHHHHHHHhhheeeeeCCeEEEeec
Confidence 4 58899 999999999999999999999998775544
No 19
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.1e-31 Score=207.79 Aligned_cols=157 Identities=17% Similarity=0.108 Sum_probs=116.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----ccCCCCc-------cCCcccccc----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYPV-------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~~-------~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~ 104 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPK 104 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCH
Confidence 599999999999999999999999999999999999876421 1223222 122222221
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh-CCC
Q 030541 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~ 131 (175)
..++++.+++..........-+..++||..++++++. +|++++||||+...+......+.++++++++ +|.
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~--~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 182 (213)
T cd03259 105 AEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAR--EPSLLLLDEPLSALDAKLREELREELKELQRELGI 182 (213)
T ss_pred HHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC
Confidence 1223444444322111111123348999999999999 9999999999776667777888889999865 489
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|| +++||+++++.++||++++++.+..+
T Consensus 183 ti----i~~sH~~~~~~~~~d~v~~l~~G~i~ 210 (213)
T cd03259 183 TT----IYVTHDQEEALALADRIAVMNEGRIV 210 (213)
T ss_pred EE----EEEecCHHHHHHhcCEEEEEECCEEE
Confidence 99 99999999999999999999988654
No 20
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=7.6e-32 Score=214.73 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=126.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------ccCCCCc-------cCCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||++||+|.||||||||+|||.+|.+|++|+|.++|.++.. +.++..+ ..++.+++.
T Consensus 31 ~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLei 110 (339)
T COG1135 31 KGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLEL 110 (339)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhh
Confidence 599999999999999999999999999999999999976422 3444443 223333332
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHH
Q 030541 59 -----------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
..++++.++++.+..... ..+| ||||+.+|||++. +|++|+.|||+...+....+.+.++|++
T Consensus 111 ag~~k~ei~~RV~elLelVgL~dk~~~yP--~qLSGGQKQRVaIARALa~--~P~iLL~DEaTSALDP~TT~sIL~LL~~ 186 (339)
T COG1135 111 AGVPKAEIKQRVAELLELVGLSDKADRYP--AQLSGGQKQRVAIARALAN--NPKILLCDEATSALDPETTQSILELLKD 186 (339)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhccCc--hhcCcchhhHHHHHHHHhc--CCCEEEecCccccCChHHHHHHHHHHHH
Confidence 235556666664432222 3344 9999999999999 9999999999666556666778889999
Q ss_pred HHh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhhh
Q 030541 126 LKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYS 169 (175)
Q Consensus 126 l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (175)
+++ .|.|| +++||.|+.+.++|+++++|++|..+-+++..
T Consensus 187 In~~lglTI----vlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~ 227 (339)
T COG1135 187 INRELGLTI----VLITHEMEVVKRICDRVAVLDQGRLVEEGTVS 227 (339)
T ss_pred HHHHcCCEE----EEEechHHHHHHHhhhheEeeCCEEEEeccHH
Confidence 864 59999 99999999999999999999999998877653
No 21
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.97 E-value=1.5e-31 Score=217.41 Aligned_cols=160 Identities=17% Similarity=0.146 Sum_probs=119.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc------ccCCCC-------ccCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYP-------VAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~-------~~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++|. +.+++.+++.
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 108 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS 108 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCC
Confidence 599999999999999999999999999999999999876421 122222 2233333321
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCC
Q 030541 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
...+++.+++..........-+..++||..++++++. +|++++||||+...+...++.+++++++++++|.
T Consensus 109 ~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~ 186 (303)
T TIGR01288 109 TREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIN--DPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 186 (303)
T ss_pred HHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC
Confidence 1123344444332212222223348999999999999 9999999999777667778888889999977899
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
|| +++||+++++.++||+++++..|..+.++
T Consensus 187 ti----l~~sH~~~~~~~~~d~i~~l~~G~i~~~g 217 (303)
T TIGR01288 187 TI----LLTTHFMEEAERLCDRLCVLESGRKIAEG 217 (303)
T ss_pred EE----EEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99 99999999999999999999988766443
No 22
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.97 E-value=1.3e-31 Score=224.02 Aligned_cols=157 Identities=13% Similarity=0.169 Sum_probs=121.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc---------------ccCCCCccCCcccccc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------------~~~~~~~~~~~~~~~~------- 58 (175)
+|||++|+|+||||||||+++|.|+++|++|+|.++|++... |.+.+.+.+++.+++.
T Consensus 29 ~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~ 108 (501)
T COG3845 29 KGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSK 108 (501)
T ss_pred CCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcccc
Confidence 599999999999999999999999999999999999987432 2222333333333332
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++.+.+++.-+.......-+..++||..+-++|.+ +|++||||||+........+.+.+.++++
T Consensus 109 ~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr--~a~iLILDEPTaVLTP~E~~~lf~~l~~l 186 (501)
T COG3845 109 GGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYR--GARLLILDEPTAVLTPQEADELFEILRRL 186 (501)
T ss_pred ccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 1234444444433322222223347899999999999 99999999997777777788888899999
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+++|+|| +++||.+.|+..+|||+.++..|+++
T Consensus 187 ~~~G~tI----i~ITHKL~Ev~~iaDrvTVLR~Gkvv 219 (501)
T COG3845 187 AAEGKTI----IFITHKLKEVMAIADRVTVLRRGKVV 219 (501)
T ss_pred HHCCCEE----EEEeccHHHHHHhhCeeEEEeCCeEE
Confidence 9999999 99999999999999999999999754
No 23
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.2e-31 Score=207.57 Aligned_cols=160 Identities=16% Similarity=0.166 Sum_probs=123.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc---ccCCC-------CccCCcccccc------------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS------------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---~~~~~-------~~~~~~~~~~~------------ 58 (175)
+|++.|++|||||||||++|+|+|+++|++|+|.|+|.+... +.++| ++.+++.+++.
T Consensus 27 ~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e 106 (300)
T COG4152 27 PGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAE 106 (300)
T ss_pred CCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHH
Confidence 499999999999999999999999999999999999987543 23444 44556655543
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCc
Q 030541 59 ----LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFN 132 (175)
Q Consensus 59 ----~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~t 132 (175)
...+++.+++...... +.+++| .+|+.-+..++.+ +|+++|||||-...+.-+.+.+.+.+.+++++|.|
T Consensus 107 ~~~~~~~wLer~~i~~~~~~--kIk~LSKGnqQKIQfisaviH--ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~Gat 182 (300)
T COG4152 107 IQKKLQAWLERLEIVGKKTK--KIKELSKGNQQKIQFISAVIH--EPELLILDEPFSGLDPVNVELLKDAIFELKEEGAT 182 (300)
T ss_pred HHHHHHHHHHhccccccccc--hHHHhhhhhhHHHHHHHHHhc--CCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCE
Confidence 2456677777665433 345666 4566666668888 99999999992222222344566788889999999
Q ss_pred EEEEeeeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 133 VCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 133 vli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
| +++||.|+.++++||++.++.-|..|.+++.
T Consensus 183 I----ifSsH~Me~vEeLCD~llmL~kG~~V~~G~v 214 (300)
T COG4152 183 I----IFSSHRMEHVEELCDRLLMLKKGQTVLYGTV 214 (300)
T ss_pred E----EEecchHHHHHHHhhhhheecCCceEEeccH
Confidence 9 9999999999999999999999999988753
No 24
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.97 E-value=2.7e-31 Score=205.59 Aligned_cols=154 Identities=15% Similarity=0.151 Sum_probs=114.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------ccCCCCc-------cCCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEV 106 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHH
Confidence 599999999999999999999999999999999999876421 1223322 122222221
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..+.++.+++..........-+..++||..++++++. +|++++||||....+...++.+.+++++++
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 184 (214)
T TIGR02673 107 RGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVN--SPPLLLADEPTGNLDPDLSERILDLLKRLN 184 (214)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 1223344444322111111123348999999999999 999999999977777777888888999987
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeEeccc
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
++|.|| +++||+++++.++||++++++.|
T Consensus 185 ~~~~ti----i~~tH~~~~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 185 KRGTTV----IVATHDLSLVDRVAHRVIILDDG 213 (214)
T ss_pred HcCCEE----EEEeCCHHHHHHhcCEEEEecCC
Confidence 778999 99999999999999999999865
No 25
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.97 E-value=1.6e-31 Score=220.42 Aligned_cols=161 Identities=14% Similarity=0.148 Sum_probs=122.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------ccCCCCc-------cCCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||++||+||||||||||+|+|+|+.+|++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 30 ~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~ 109 (343)
T TIGR02314 30 AGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109 (343)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHH
Confidence 599999999999999999999999999999999999986521 1233322 223333332
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..|+||..++|+++. +|+++++|||+...+......+.+++++++
T Consensus 110 ~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~--~P~iLLlDEPts~LD~~t~~~i~~lL~~l~ 187 (343)
T TIGR02314 110 DNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALAS--NPKVLLCDEATSALDPATTQSILELLKEIN 187 (343)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 1234555565443222222223348999999999999 999999999966666777778888999987
Q ss_pred hC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 128 SR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++ |.|| +++||+++.+.++||++++|+.|..+-+++
T Consensus 188 ~~~g~ti----iliTH~~~~v~~~~d~v~vl~~G~iv~~g~ 224 (343)
T TIGR02314 188 RRLGLTI----LLITHEMDVVKRICDCVAVISNGELIEQGT 224 (343)
T ss_pred HhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 64 8999 999999999999999999999988765543
No 26
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.3e-31 Score=208.90 Aligned_cols=162 Identities=18% Similarity=0.143 Sum_probs=119.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------ccCCCCc-------cCCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+ .+++.+++.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 104 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLRE 104 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhh
Confidence 599999999999999999999999999999999999875421 1223322 122222211
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..++||..+++++.. +|++++||||....+......+.++++++
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~ 182 (235)
T cd03261 105 HTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALAL--DPELLLYDEPTAGLDPIASGVIDDLIRSL 182 (235)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 1123444444332211111123348999999999999 99999999997666677777888899998
Q ss_pred Hh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
++ +|.|| +++||+++++.++||+++++..|..+.+++.
T Consensus 183 ~~~~~~tv----i~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~ 221 (235)
T cd03261 183 KKELGLTS----IMVTHDLDTAFAIADRIAVLYDGKIVAEGTP 221 (235)
T ss_pred HHhcCcEE----EEEecCHHHHHHhcCEEEEEECCeEEEecCH
Confidence 76 48999 9999999999999999999998887665543
No 27
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.97 E-value=2.5e-31 Score=206.26 Aligned_cols=157 Identities=19% Similarity=0.190 Sum_probs=117.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc------ccCCCC-------ccCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYP-------VAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~-------~~~~~~~~~~--------- 58 (175)
+||+++|+|+||||||||+|+|+|+++|++|+|.++|.++.. +.+++. +..++.+++.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 109 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLK 109 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCC
Confidence 499999999999999999999999999999999999876421 112222 2223333321
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCC
Q 030541 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.+++++++++|.
T Consensus 110 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~ 187 (218)
T cd03266 110 GDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVH--DPPVLLLDEPTTGLDVMATRALREFIRQLRALGK 187 (218)
T ss_pred HHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCC
Confidence 1224444444322111111122348899999999999 9999999999777667777888889999877789
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|| +++||+.+++.+++|+++++..+..+
T Consensus 188 ti----i~~tH~~~~~~~~~d~i~~l~~G~i~ 215 (218)
T cd03266 188 CI----LFSTHIMQEVERLCDRVVVLHRGRVV 215 (218)
T ss_pred EE----EEEeCCHHHHHHhcCEEEEEECCEEe
Confidence 99 99999999999999999999888654
No 28
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.97 E-value=2.2e-31 Score=216.36 Aligned_cols=160 Identities=19% Similarity=0.239 Sum_probs=121.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc------ccCCCC-------ccCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYP-------VAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~-------~~~~~~~~~~--------- 58 (175)
+||++||+||||||||||+|+|+|+++|++|+|.++|.++.. +.++|. +.+++.+++.
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~ 106 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMK 106 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 599999999999999999999999999999999999976522 122222 2233333332
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCC
Q 030541 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
..++++.+++..........-+..++||..+++++.. +|++++||||+...+...++.++++++++++ +.
T Consensus 107 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~--~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~ 183 (301)
T TIGR03522 107 GQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIH--DPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DK 183 (301)
T ss_pred HHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CC
Confidence 1234444555433222222233448999999999999 9999999999777667777888889999865 78
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|| +++||++++++++||+++++..|..+..++
T Consensus 184 ti----ii~sH~l~~~~~~~d~i~~l~~G~i~~~g~ 215 (301)
T TIGR03522 184 TI----ILSTHIMQEVEAICDRVIIINKGKIVADKK 215 (301)
T ss_pred EE----EEEcCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99 999999999999999999999888765443
No 29
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.4e-31 Score=206.87 Aligned_cols=160 Identities=14% Similarity=0.117 Sum_probs=118.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc------ccCCCCc-------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYPV-------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~~-------~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 104 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVP 104 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCC
Confidence 599999999999999999999999999999999999865421 1222222 223322221
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-C
Q 030541 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-N 130 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g 130 (175)
..++++.+++..........-+..|+||..+++++.. +|++++||||....+....+.+.+++++++++ |
T Consensus 105 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 182 (220)
T cd03265 105 GAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVH--RPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFG 182 (220)
T ss_pred HHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcC
Confidence 1233444555332111111123348999999999999 99999999996666666777888899998765 8
Q ss_pred CcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 131 FNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 131 ~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.|| +++||+++++..+|++++++..|..+..+
T Consensus 183 ~tv----i~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 214 (220)
T cd03265 183 MTI----LLTTHYMEEAEQLCDRVAIIDHGRIIAEG 214 (220)
T ss_pred CEE----EEEeCCHHHHHHhCCEEEEEeCCEEEEeC
Confidence 899 99999999999999999999998876543
No 30
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.97 E-value=2.3e-31 Score=223.27 Aligned_cols=161 Identities=16% Similarity=0.124 Sum_probs=121.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCC-------ccCCcccccc--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYP-------VAMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~-------~~~~~~~~~~-------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. +.+++. +.+++.+++.
T Consensus 28 ~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~ 107 (402)
T PRK09536 28 EGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRS 107 (402)
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcc
Confidence 599999999999999999999999999999999999976432 112222 1222222110
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..|+||..+++++++ +|++++||||....+...+..++++|+++
T Consensus 108 ~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~--~P~iLLLDEPtsgLD~~~~~~l~~lL~~l 185 (402)
T PRK09536 108 RFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQ--ATPVLLLDEPTASLDINHQVRTLELVRRL 185 (402)
T ss_pred cccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 1334455555432222222233448999999999999 99999999996666666777888899999
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++|.|| +++||+++++.++||+++++..|..+.+++
T Consensus 186 ~~~g~TI----IivsHdl~~~~~~adrii~l~~G~iv~~G~ 222 (402)
T PRK09536 186 VDDGKTA----VAAIHDLDLAARYCDELVLLADGRVRAAGP 222 (402)
T ss_pred HhcCCEE----EEEECCHHHHHHhCCEEEEEECCEEEEecC
Confidence 8778999 999999999999999999999988766544
No 31
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=4e-31 Score=204.26 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=120.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------ccCCCCc-------cCCccccccH----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELISL---- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~~---- 59 (175)
+||+++|+||||||||||+|+|.|+++|++|+|.++|.++.. +++++.+ .+++++++.+
T Consensus 33 ~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre 112 (263)
T COG1127 33 RGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE 112 (263)
T ss_pred CCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHh
Confidence 599999999999999999999999999999999999998532 2233333 3344444331
Q ss_pred -------------HHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHH
Q 030541 60 -------------EDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 60 -------------~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..-++.+++........+ .++| ++.|.+||||++. ||+++++|||+...+--....+.++++
T Consensus 113 ~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-sELSGGM~KRvaLARAial--dPell~~DEPtsGLDPI~a~~~~~LI~ 189 (263)
T COG1127 113 HTKLPESLIRELVLMKLELVGLRGAAADLYP-SELSGGMRKRVALARAIAL--DPELLFLDEPTSGLDPISAGVIDELIR 189 (263)
T ss_pred hccCCHHHHHHHHHHHHHhcCCChhhhhhCc-hhhcchHHHHHHHHHHHhc--CCCEEEecCCCCCCCcchHHHHHHHHH
Confidence 112233344333111122 3444 7888999999999 999999999944444445567778999
Q ss_pred HHHhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 125 HLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 125 ~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
++++. |.|+ +++||+++++...||+++++..++++-+++.
T Consensus 190 ~L~~~lg~T~----i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 190 ELNDALGLTV----IMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHhhCCEE----EEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 99765 8999 9999999999999999999999988776654
No 32
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3.2e-31 Score=204.71 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=116.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc---ccCCC-------CccCCcccccc------------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS------------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---~~~~~-------~~~~~~~~~~~------------ 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+++ .+..++.+++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 104 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEE 104 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHH
Confidence 599999999999999999999999999999999999976421 11222 22223333321
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEE
Q 030541 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVC 134 (175)
Q Consensus 59 ----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvl 134 (175)
..++++.+++..........-+..++++..++++++. +|++++||||....+....+.+.++++++++++.||
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~--~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~ti- 181 (210)
T cd03269 105 ARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIH--DPELLILDEPFSGLDPVNVELLKDVIRELARAGKTV- 181 (210)
T ss_pred HHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEE-
Confidence 1223444444322111111123348899999999999 999999999976666777778888999987778899
Q ss_pred EEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 135 AVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 135 i~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+++||+.+++.+++|+++++..+..+
T Consensus 182 ---i~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 182 ---ILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred ---EEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 99999999999999999999987654
No 33
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.2e-31 Score=220.71 Aligned_cols=158 Identities=16% Similarity=0.074 Sum_probs=119.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcc-----cccCC-------CCccCCcccccc----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFD-------YPVAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----~~~~~-------~~~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++. .+.++ +.+.+++.+++.
T Consensus 29 ~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~ 108 (356)
T PRK11650 29 DGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPK 108 (356)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCH
Confidence 59999999999999999999999999999999999997642 12233 233344444332
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-CC
Q 030541 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
..++++.+++..........-+..|+||.+|+|++.. +|++++||||....+...+..+.+.+++++++ |.
T Consensus 109 ~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~--~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 186 (356)
T PRK11650 109 AEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVR--EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKT 186 (356)
T ss_pred HHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 1234444555432222221223348999999999999 99999999996665666677788889888664 89
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhhH
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
|+ +++||+.+++..++|++++|..|..+-
T Consensus 187 ti----i~vTHd~~ea~~l~D~i~vl~~G~i~~ 215 (356)
T PRK11650 187 TS----LYVTHDQVEAMTLADRVVVMNGGVAEQ 215 (356)
T ss_pred EE----EEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 99 999999999999999999999887643
No 34
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.3e-31 Score=207.00 Aligned_cols=160 Identities=18% Similarity=0.088 Sum_probs=117.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--ccCCCCc-------cCCcccccc-------------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPV-------AMDIRELIS------------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--~~~~~~~-------~~~~~~~~~------------- 58 (175)
+|++++|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 108 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEA 108 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHH
Confidence 599999999999999999999999999999999999876421 1222222 223333221
Q ss_pred ---HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh-CCCcEE
Q 030541 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVC 134 (175)
Q Consensus 59 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvl 134 (175)
..++++.+++..........-+..++||..++++++. +|++++||||....+....+.+.++++++++ +|.||
T Consensus 109 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~ti- 185 (220)
T cd03293 109 RERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAV--DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTV- 185 (220)
T ss_pred HHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEE-
Confidence 1233444454322111111223348899999999999 9999999999777667777788889998854 58899
Q ss_pred EEeeeehhchhhhhcCCcceeEec--cchhhHHh
Q 030541 135 AVYLLDSQVCIRFRTLPPCIVCFC--CTHTVVQR 166 (175)
Q Consensus 135 i~~l~~sH~~~~~~~~~~~~~~~~--~~~~~~~~ 166 (175)
+++||+++++.++||+++++. .|..+-+.
T Consensus 186 ---ii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~ 216 (220)
T cd03293 186 ---LLVTHDIDEAVFLADRVVVLSARPGRIVAEV 216 (220)
T ss_pred ---EEEecCHHHHHHhCCEEEEEECCCCEEEEEE
Confidence 999999999999999999998 56655433
No 35
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.97 E-value=4e-31 Score=206.93 Aligned_cols=160 Identities=16% Similarity=0.149 Sum_probs=117.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCc-------cCCcccccc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.+... ..+++.+ ..++.+++.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG 104 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC
Confidence 599999999999999999999999999999999999875421 1122222 122222221
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC
Q 030541 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
..++++.+++..........-+..++||..+++++.. +|++++||||....+....+.+.+++++++++
T Consensus 105 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 182 (232)
T cd03218 105 LSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALAT--NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR 182 (232)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 1123333444321111111122348899999999999 99999999996666677777888899998777
Q ss_pred CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+.|| +++||+++++..++|+++++..|..+...
T Consensus 183 ~~ti----i~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 215 (232)
T cd03218 183 GIGV----LITDHNVRETLSITDRAYIIYEGKVLAEG 215 (232)
T ss_pred CCEE----EEEeCCHHHHHHhCCEEEEEECCeEEEEe
Confidence 8999 99999999999999999999988765443
No 36
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.97 E-value=4.4e-31 Score=207.15 Aligned_cols=161 Identities=17% Similarity=0.169 Sum_probs=119.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCc-------cCCcccccc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~------- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++|.+ .+++.+++.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~ 104 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQART 104 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcc
Confidence 599999999999999999999999999999999999875421 1122222 122222211
Q ss_pred -------------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 59 -------------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 -------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..++++.+++..........-+..++||..+++++.. +|++++||||+...+......+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l 182 (236)
T cd03219 105 GSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT--DPKLLLLDEPAAGLNPEETEEL 182 (236)
T ss_pred ccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHH
Confidence 1223344444322211111123348899999999999 9999999999777667777888
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.+++++++++|.|| +++||+++++.++||+++++..|..+.++.
T Consensus 183 ~~~l~~~~~~~~ti----i~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 183 AELIRELRERGITV----LLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHCCCEE----EEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 88999987778999 999999999999999999999888765543
No 37
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.97 E-value=3.4e-31 Score=219.31 Aligned_cols=160 Identities=15% Similarity=0.106 Sum_probs=121.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcc-----cccCC-------CCccCCcccccc----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFD-------YPVAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----~~~~~-------~~~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|+++. .+.++ ..+.+++.+++.
T Consensus 29 ~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~ 108 (353)
T TIGR03265 29 KGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGR 108 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCH
Confidence 49999999999999999999999999999999999997642 12232 333344444432
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-CC
Q 030541 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
..++++.+++..........-+..|+||.+|+|+++. +|++++||||....+...+..+++.|+++.++ |.
T Consensus 109 ~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~--~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~ 186 (353)
T TIGR03265 109 AEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALAT--SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGV 186 (353)
T ss_pred HHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 1334555565543322222223348999999999999 99999999996665666677888889888654 89
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
|+ +++||+.+++..++|++++|..|..+-++
T Consensus 187 tv----i~vTHd~~ea~~l~d~i~vl~~G~i~~~g 217 (353)
T TIGR03265 187 TT----IMVTHDQEEALSMADRIVVMNHGVIEQVG 217 (353)
T ss_pred EE----EEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99 99999999999999999999988766443
No 38
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.97 E-value=5.1e-31 Score=204.54 Aligned_cols=154 Identities=16% Similarity=0.131 Sum_probs=114.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----------ccCCCCc-------cCCcccccc----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPV-------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~-------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ .+++.+++.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 108 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLL 108 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHh
Confidence 599999999999999999999999999999999999876421 1223222 223322221
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..++|+..++++++. +|++++||||....+....+.+.++++++
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 186 (218)
T cd03255 109 LAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAN--DPKIILADEPTGNLDSETGKEVMELLREL 186 (218)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHcc--CCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 1234444554332211111123348999999999999 99999999996666677778888899998
Q ss_pred Hh-CCCcEEEEeeeehhchhhhhcCCcceeEeccch
Q 030541 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
++ +|.|| +++||+++++. +||++++++.|.
T Consensus 187 ~~~~~~ti----i~~sH~~~~~~-~~d~v~~l~~G~ 217 (218)
T cd03255 187 NKEAGTTI----VVVTHDPELAE-YADRIIELRDGK 217 (218)
T ss_pred HHhcCCeE----EEEECCHHHHh-hhcEEEEeeCCc
Confidence 76 58999 99999999987 999999998764
No 39
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.97 E-value=5.3e-31 Score=203.51 Aligned_cols=154 Identities=18% Similarity=0.135 Sum_probs=113.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc--------cCCcccccc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV--------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~--------~~~~~~~~~------- 58 (175)
+|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.++|.+ ..++.+++.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~ 105 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG 105 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcC
Confidence 599999999999999999999999999999999999875421 1222222 122222221
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC
Q 030541 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
..++++.+++..........-+..++|+..++++++. +|++++||||+...+....+.+.+++++++++
T Consensus 106 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 183 (211)
T cd03225 106 LPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAM--DPDILLLDEPTAGLDPAGRRELLELLKKLKAE 183 (211)
T ss_pred CCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc
Confidence 1123444444322111111223348999999999999 99999999996666677777888899998777
Q ss_pred CCcEEEEeeeehhchhhhhcCCcceeEeccc
Q 030541 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
|.|| +++||+++++..+||+++++..|
T Consensus 184 ~~tv----i~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 184 GKTI----IIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred CCEE----EEEeCCHHHHHHhCCEEEEEeCC
Confidence 8999 99999999999999999999765
No 40
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.97 E-value=6.6e-31 Score=202.67 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=116.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----ccCCCCc-------cCCcccccc----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYPV-------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~~-------~~~~~~~~~---------- 58 (175)
+|++++|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 104 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRK 104 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcH
Confidence 599999999999999999999999999999999999986531 1222222 223333221
Q ss_pred --HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEE
Q 030541 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (175)
Q Consensus 59 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~ 136 (175)
...+++.+++..........-+..++++..++++++. +|++++||||+...+....+.+.+++++++++|.|+
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti--- 179 (208)
T cd03268 105 KRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLG--NPDLLILDEPTNGLDPDGIKELRELILSLRDQGITV--- 179 (208)
T ss_pred HHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhc--CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEE---
Confidence 1223344444322111111122348899999999999 999999999966666777778888999987778999
Q ss_pred eeeehhchhhhhcCCcceeEeccchhh
Q 030541 137 YLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 137 ~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+++||+++++.+++|+++++..+..+
T Consensus 180 -i~~tH~~~~~~~~~d~v~~l~~g~i~ 205 (208)
T cd03268 180 -LISSHLLSEIQKVADRIGIINKGKLI 205 (208)
T ss_pred -EEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999988754
No 41
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.97 E-value=6e-31 Score=206.15 Aligned_cols=161 Identities=16% Similarity=0.061 Sum_probs=118.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccc---------cCCCCccCCcccccc-------------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE---------NFDYPVAMDIRELIS------------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~---------~~~~~~~~~~~~~~~------------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++... ...+.+..++.+++.
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~ 89 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKS 89 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCHH
Confidence 5999999999999999999999999999999999998764321 111112223332221
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-CCc
Q 030541 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NFN 132 (175)
Q Consensus 59 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~t 132 (175)
..++++.+++..........-+..++||..+++++.. +|+++|||||....+......+.+++++++++ |.|
T Consensus 90 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~t 167 (230)
T TIGR01184 90 ERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSI--RPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVT 167 (230)
T ss_pred HHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCE
Confidence 1223344444321111111123348899999999999 99999999997776677777888899888654 889
Q ss_pred EEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 133 VCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 133 vli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
| +++||+++++.++||++++++.+..+.+.+
T Consensus 168 i----i~~sH~~~~~~~~~d~v~~l~~G~i~~~~~ 198 (230)
T TIGR01184 168 V----LMVTHDVDEALLLSDRVVMLTNGPAANIGQ 198 (230)
T ss_pred E----EEEeCCHHHHHHhcCEEEEEeCCcEecccC
Confidence 9 999999999999999999999988775543
No 42
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=4.1e-31 Score=196.89 Aligned_cols=163 Identities=20% Similarity=0.188 Sum_probs=126.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCc-----ccccCCCCccCCccccccHHHHHHHhCCCCCCchhh
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----AAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIY 76 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 76 (175)
||+++|+||+|||||||+++|+|...|.+|+|.++|.+. .++.++..+ +....|...++.++++++.....+.
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlF--QEnNLFaHLtV~qNigLGl~P~LkL 102 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLF--QENNLFAHLTVAQNIGLGLSPGLKL 102 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhh--hccccchhhhhhhhhcccCCccccc
Confidence 899999999999999999999999999999999999874 334444444 5556666677777776664321111
Q ss_pred -----------------------hHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH-hCC
Q 030541 77 -----------------------CMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRN 130 (175)
Q Consensus 77 -----------------------~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-~~g 130 (175)
-..++| ++||.+++|.+.+ +.|+++||||-....-.-++.+..++.+++ +++
T Consensus 103 ~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR--~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~ 180 (231)
T COG3840 103 NAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVR--EQPILLLDEPFSALDPALRAEMLALVSQLCDERK 180 (231)
T ss_pred CHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhc--cCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhC
Confidence 112333 8899999999999 999999999922222223446667888875 569
Q ss_pred CcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhhhccc
Q 030541 131 FNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYSFLF 172 (175)
Q Consensus 131 ~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (175)
.|+ +++||..+++...++++++++.|....|....-+|
T Consensus 181 ~Tl----lmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 181 MTL----LMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred CEE----EEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 999 99999999999999999999999999988766554
No 43
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=6.3e-31 Score=203.19 Aligned_cols=157 Identities=18% Similarity=0.148 Sum_probs=114.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----ccCCCCc-------cCCcccccc----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYPV-------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~~-------~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~ 102 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLT 102 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccCcc
Confidence 599999999999999999999999999999999999875421 1122222 122222211
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh-CCC
Q 030541 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~ 131 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.++++++++ ++.
T Consensus 103 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~--~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~ 180 (211)
T cd03298 103 AEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVR--DKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKM 180 (211)
T ss_pred HHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 1223333343321111111122348899999999999 9999999999777667777888889999865 489
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|| +++||+++++.++||+++++..+..+
T Consensus 181 ti----i~~sH~~~~~~~~~d~i~~l~~G~i~ 208 (211)
T cd03298 181 TV----LMVTHQPEDAKRLAQRVVFLDNGRIA 208 (211)
T ss_pred EE----EEEecCHHHHHhhhCEEEEEECCEEe
Confidence 99 99999999999999999999988754
No 44
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=4.9e-31 Score=199.17 Aligned_cols=143 Identities=22% Similarity=0.188 Sum_probs=113.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc---------ccCCCCccCCccccccHHHHHHHhCCCCC
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVAMDIRELISLEDVMEELGLGPN 71 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+ +....+...++.+++.+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~--q~~~~~~~~t~~~~l~~~-- 100 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVF--QDFALFPHLTVLENIALG-- 100 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEe--cCCccCCCCCHHHheeec--
Confidence 599999999999999999999999999999999999876432 1122332 222233333555555432
Q ss_pred CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-CCcEEEEeeeehhchhhhhcC
Q 030541 72 GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTL 150 (175)
Q Consensus 72 ~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~ 150 (175)
-+..+++|..+++++.. +|++++||||....+...++.+.+++++++++ +.|+ +++||+.+++.++
T Consensus 101 -------lS~G~~qr~~la~al~~--~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~ti----ii~sH~~~~~~~~ 167 (178)
T cd03229 101 -------LSGGQQQRVALARALAM--DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITV----VLVTHDLDEAARL 167 (178)
T ss_pred -------CCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE----EEEeCCHHHHHHh
Confidence 23458999999999999 99999999997776777788888899998776 7899 9999999999999
Q ss_pred CcceeEeccc
Q 030541 151 PPCIVCFCCT 160 (175)
Q Consensus 151 ~~~~~~~~~~ 160 (175)
+|++++++.+
T Consensus 168 ~d~i~~l~~g 177 (178)
T cd03229 168 ADRVVVLRDG 177 (178)
T ss_pred cCEEEEEeCC
Confidence 9999999765
No 45
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.97 E-value=5.8e-31 Score=203.58 Aligned_cols=157 Identities=14% Similarity=0.061 Sum_probs=115.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----ccCCCCc-------cCCcccccc----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYPV-------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~~-------~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~ 104 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPK 104 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCCH
Confidence 599999999999999999999999999999999999876421 1122222 122222221
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh-CCC
Q 030541 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~ 131 (175)
..++++.+++..........-+..++|+..+++++.. +|++++||||....+......+.++++++++ +|.
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 182 (213)
T cd03301 105 DEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVR--EPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGT 182 (213)
T ss_pred HHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC
Confidence 1123333444321111111123348899999999999 9999999999776667777788889999875 489
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|| +++||+++++.+++++++++..+..+
T Consensus 183 tv----i~~sH~~~~~~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 183 TT----IYVTHDQVEAMTMADRIAVMNDGQIQ 210 (213)
T ss_pred EE----EEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 99 99999999999999999999887654
No 46
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=7.4e-31 Score=206.53 Aligned_cols=161 Identities=14% Similarity=0.095 Sum_probs=116.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----ccCCCCc-------cCCcccccc----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYPV-------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~~-------~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 106 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSE 106 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccc
Confidence 599999999999999999999999999999999999875421 1122222 122222211
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh
Q 030541 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS 128 (175)
Q Consensus 59 ----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~ 128 (175)
...+++.+++..........-+..++||..+++++.. +|++++||||....+......+.++++++++
T Consensus 107 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 184 (239)
T cd03296 107 RPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAV--EPKVLLLDEPFGALDAKVRKELRRWLRRLHD 184 (239)
T ss_pred cCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 1122333444321111111122348899999999999 9999999999666667777788889999876
Q ss_pred C-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 129 R-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 129 ~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+ |.|| +++||+++++..+||++++++.+..+..+.
T Consensus 185 ~~~~tv----ii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 220 (239)
T cd03296 185 ELHVTT----VFVTHDQEEALEVADRVVVMNKGRIEQVGT 220 (239)
T ss_pred HcCCEE----EEEeCCHHHHHHhCCEEEEEECCeEEEecC
Confidence 4 8999 999999999999999999998887664433
No 47
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.97 E-value=1.2e-30 Score=201.79 Aligned_cols=155 Identities=15% Similarity=0.160 Sum_probs=114.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------ccCCCCc-------cCCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~ 105 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEV 105 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHH
Confidence 599999999999999999999999999999999999875421 1222222 123332221
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..+.++.+++..........-+..++|+..+++++.. +|++++||||+...+....+.+.+++++++
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~~~l~~~~ 183 (214)
T cd03292 106 TGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVN--SPTILIADEPTGNLDPDTTWEIMNLLKKIN 183 (214)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 1223344444322111111123348899999999999 999999999966666677778888999987
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeEeccch
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
++|.|| +++||+.+++.++||+++++..|.
T Consensus 184 ~~~~ti----iivtH~~~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 184 KAGTTV----VVATHAKELVDTTRHRVIALERGK 213 (214)
T ss_pred HcCCEE----EEEeCCHHHHHHhCCEEEEEeCCc
Confidence 778999 999999999999999999998764
No 48
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7.2e-31 Score=217.21 Aligned_cols=160 Identities=15% Similarity=0.086 Sum_probs=119.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----ccCC-------CCccCCccccccH---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFD-------YPVAMDIRELISL--------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~-------~~~~~~~~~~~~~--------- 59 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.++ +.+.+++.+++.+
T Consensus 31 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~ 110 (351)
T PRK11432 31 QGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK 110 (351)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCH
Confidence 599999999999999999999999999999999999976421 2233 3333444444321
Q ss_pred -------HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-CC
Q 030541 60 -------EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 60 -------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
.++++.+++..........-+..|+||..|+|+++. +|++++||||....+...+..+++.|++++++ |.
T Consensus 111 ~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~--~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 188 (351)
T PRK11432 111 EERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALIL--KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNI 188 (351)
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 224444454432222221123348999999999999 99999999996666666677888889988654 89
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
|+ +++||+.+++..++|++++|..|..+-++
T Consensus 189 ti----i~vTHd~~e~~~laD~i~vm~~G~i~~~g 219 (351)
T PRK11432 189 TS----LYVTHDQSEAFAVSDTVIVMNKGKIMQIG 219 (351)
T ss_pred EE----EEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99 99999999999999999999988765433
No 49
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=8.6e-31 Score=205.27 Aligned_cols=161 Identities=12% Similarity=0.100 Sum_probs=119.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------ccCCCCc-------cCCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++|.+ ..++.+++.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 109 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEI 109 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHH
Confidence 599999999999999999999999999999999999876421 1222222 223333221
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..+.++.+++..........-+..++++..++++++. +|++++||||....+......+.+++++++
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~~~l~~~~ 187 (233)
T cd03258 110 AGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN--NPKVLLCDEATSALDPETTQSILALLRDIN 187 (233)
T ss_pred cCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCCCcCCHHHHHHHHHHHHHHH
Confidence 1223444444322111111123348899999999999 999999999966666777778888999987
Q ss_pred hC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 128 SR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++ |.|| +++||+++++..++|+++++..|..+.+.+
T Consensus 188 ~~~~~tv----ii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 224 (233)
T cd03258 188 RELGLTI----VLITHEMEVVKRICDRVAVMEKGEVVEEGT 224 (233)
T ss_pred HHcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 65 8999 999999999999999999999888776554
No 50
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=8.6e-31 Score=206.20 Aligned_cols=161 Identities=13% Similarity=0.122 Sum_probs=119.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc---------ccCCCCc-------cCCcccccc------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPV-------AMDIRELIS------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------~~~~~~~-------~~~~~~~~~------ 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++|.+ ..++.+++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 105 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV 105 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh
Confidence 599999999999999999999999999999999999876431 1222222 223322221
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+...+..+.+++++++
T Consensus 106 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 183 (240)
T PRK09493 106 RGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAV--KPKLMLFDEPTSALDPELRHEVLKVMQDLA 183 (240)
T ss_pred cCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 1223444444322111111122348899999999999 999999999977766777788888999987
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++|.|+ +++||+++++..+||++++++.+..+.++.
T Consensus 184 ~~~~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 219 (240)
T PRK09493 184 EEGMTM----VIVTHEIGFAEKVASRLIFIDKGRIAEDGD 219 (240)
T ss_pred HcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEeeCC
Confidence 778999 999999999999999999999888776544
No 51
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.97 E-value=1.3e-30 Score=201.55 Aligned_cols=155 Identities=17% Similarity=0.175 Sum_probs=113.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc---------ccCCCCc-------cCCcccccc------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPV-------AMDIRELIS------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------~~~~~~~-------~~~~~~~~~------ 58 (175)
+|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.++|.+ ..++.+++.
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~ 104 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV 104 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh
Confidence 599999999999999999999999999999999999875421 1223322 122222221
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.+++++++
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 182 (213)
T cd03262 105 KGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM--NPKVMLFDEPTSALDPELVGEVLDVMKDLA 182 (213)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 1123333444321111111123348899999999999 999999999966666667778888999987
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeEeccch
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
++|.|| +++||+++++.++||+++++..+.
T Consensus 183 ~~~~tv----i~~sh~~~~~~~~~d~i~~l~~g~ 212 (213)
T cd03262 183 EEGMTM----VVVTHEMGFAREVADRVIFMDDGR 212 (213)
T ss_pred HcCCEE----EEEeCCHHHHHHhCCEEEEEeCCc
Confidence 778999 999999999999999999998764
No 52
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.97 E-value=7.9e-31 Score=217.70 Aligned_cols=160 Identities=14% Similarity=0.123 Sum_probs=121.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcccc--ceEEEeecCcc-----cccCC-------CCccCCcccccc--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVR--RTMHIVNLDPA-----AENFD-------YPVAMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~--G~I~i~g~~~~-----~~~~~-------~~~~~~~~~~~~-------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++ |+|.++|.++. .+.++ +.+.+++.+++.
T Consensus 30 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~ 109 (362)
T TIGR03258 30 AGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM 109 (362)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCC
Confidence 499999999999999999999999999999 99999987642 12222 333344444432
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-
Q 030541 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR- 129 (175)
Q Consensus 59 --------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~- 129 (175)
..++++.+++..........-+..|+||.+|+|+++. +|++++||||....+...+..+++.|++++++
T Consensus 110 ~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~--~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 187 (362)
T TIGR03258 110 PKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAI--EPDVLLLDEPLSALDANIRANMREEIAALHEEL 187 (362)
T ss_pred CHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhC
Confidence 1234555555443322222223348999999999999 99999999996666666677888899988765
Q ss_pred -CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 130 -NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 130 -g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
|.|+ +++||+++++..++|++++|..|..+-++
T Consensus 188 ~g~ti----l~vTHd~~ea~~l~dri~vl~~G~i~~~g 221 (362)
T TIGR03258 188 PELTI----LCVTHDQDDALTLADKAGIMKDGRLAAHG 221 (362)
T ss_pred CCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 7899 99999999999999999999988765443
No 53
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.97 E-value=1.1e-30 Score=202.99 Aligned_cols=160 Identities=16% Similarity=0.090 Sum_probs=118.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc------ccCCCCc-------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYPV-------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~~-------~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 106 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLP 106 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCC
Confidence 599999999999999999999999999999999999876421 1122222 223332221
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCC
Q 030541 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
..++++.+++..........-+..++|+..++++++. +|++++||||....+....+.+.++++++++ +.
T Consensus 107 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~ 183 (220)
T cd03263 107 KSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIG--GPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GR 183 (220)
T ss_pred HHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhc--CCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CC
Confidence 1233444454322111111123348899999999999 9999999999666666677788889998865 58
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|| +++||+++++.++||+++++..+..+.+++
T Consensus 184 ti----i~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 215 (220)
T cd03263 184 SI----ILTTHSMDEAEALCDRIAIMSDGKLRCIGS 215 (220)
T ss_pred EE----EEEcCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99 999999999999999999999988765543
No 54
>PRK10908 cell division protein FtsE; Provisional
Probab=99.97 E-value=1.4e-30 Score=202.71 Aligned_cols=157 Identities=11% Similarity=0.062 Sum_probs=115.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------ccCCCCc-------cCCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++|.+ ..++.+++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLII 106 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHh
Confidence 599999999999999999999999999999999999875421 1222222 122222221
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..+.++.+++..........-+..++|+..+++++.. +|++++||||....+...++.+.+++++++
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 184 (222)
T PRK10908 107 AGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVN--KPAVLLADEPTGNLDDALSEGILRLFEEFN 184 (222)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 1123344444322111111122348899999999999 999999999966666667778888999987
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+++.|+ +++||+++++..++|++++++.+..+
T Consensus 185 ~~~~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 185 RVGVTV----LMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HCCCEE----EEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 778899 99999999999999999999887654
No 55
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=9.8e-31 Score=205.69 Aligned_cols=161 Identities=16% Similarity=0.100 Sum_probs=117.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------ccCCCCc-------cCCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 105 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLG 105 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcc
Confidence 599999999999999999999999999999999999876421 1222222 122222221
Q ss_pred -------------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 59 -------------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 -------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..++++.+++..........-+..++|+..+++++.. +|++++||||....+......+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l 183 (241)
T cd03256 106 RRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQ--QPKLILADEPVASLDPASSRQV 183 (241)
T ss_pred cchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHH
Confidence 1122333444321111111122348899999999999 9999999999666666677788
Q ss_pred HHHHHHHHh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 120 RNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.++++++++ +|.|| +++||+++++.++||+++++..|..+.+.+
T Consensus 184 ~~~l~~~~~~~~~ti----i~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 184 MDLLKRINREEGITV----IVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 889999865 48999 999999999999999999999887765543
No 56
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.97 E-value=8.7e-31 Score=206.33 Aligned_cols=161 Identities=16% Similarity=0.153 Sum_probs=116.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------ccCCCCc-------cCCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 106 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLG 106 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccc
Confidence 599999999999999999999999999999999999876421 1223322 112222211
Q ss_pred -------------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 59 -------------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 -------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..++++.+++..........-+..+++|..+++++.. +|++++||||....+......+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l 184 (243)
T TIGR02315 107 YKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQ--QPDLILADEPIASLDPKTSKQV 184 (243)
T ss_pred cccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 1122333333221111111122348899999999999 9999999999666666777788
Q ss_pred HHHHHHHHh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 120 RNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.++|+++++ .|.|| +++||+++++.++||++++++.|..+.+++
T Consensus 185 ~~~l~~~~~~~~~ti----ii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 185 MDYLKRINKEDGITV----IINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHcCCEE----EEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 889999865 48899 999999999999999999999887765543
No 57
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.5e-30 Score=200.09 Aligned_cols=160 Identities=16% Similarity=0.096 Sum_probs=128.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCccCCccccccHHHHHHHhCCCCCC
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPVAMDIRELISLEDVMEELGLGPNG 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 72 (175)
+||+++|+|+||||||||+|+|+|+.++.+|+|.++|.|+.. ..++|+| +.++.|+..+|.||+.++...
T Consensus 28 ~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VP--egR~iF~~LTVeENL~~g~~~ 105 (237)
T COG0410 28 RGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVP--EGRRIFPRLTVEENLLLGAYA 105 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCc--ccccchhhCcHHHHHhhhhhc
Confidence 599999999999999999999999999999999999998643 3456777 888899988999998776322
Q ss_pred chh--------h---------------hHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 73 GLI--------Y---------------CMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 73 ~~~--------~---------------~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
... . ....+ .++|..+++|+++. +|++|+||||+...-..-...+.+.+++++
T Consensus 106 ~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~--~PklLLLDEPs~GLaP~iv~~I~~~i~~l~ 183 (237)
T COG0410 106 RRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMS--RPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183 (237)
T ss_pred ccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhc--CCCEEEecCCccCcCHHHHHHHHHHHHHHH
Confidence 110 0 00111 26788999999999 999999999944433333344555889998
Q ss_pred hC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 128 SR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 128 ~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
++ |.|| +++-++...+.+++|+..+|.+|.++..++.
T Consensus 184 ~~~g~tI----lLVEQn~~~Al~iaDr~yvle~Griv~~G~~ 221 (237)
T COG0410 184 KEGGMTI----LLVEQNARFALEIADRGYVLENGRIVLSGTA 221 (237)
T ss_pred HcCCcEE----EEEeccHHHHHHhhCEEEEEeCCEEEEecCH
Confidence 65 7799 9999999999999999999999999887653
No 58
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.97 E-value=1.7e-30 Score=202.89 Aligned_cols=157 Identities=17% Similarity=0.021 Sum_probs=117.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--ccCCCCccCCcccccc----------------HHHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELIS----------------LEDV 62 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--~~~~~~~~~~~~~~~~----------------~~~~ 62 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.+... ....+.+..++.+++. ..++
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 126 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEI 126 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 599999999999999999999999999999999999876431 1233444444444332 1223
Q ss_pred HHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehh
Q 030541 63 MEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (175)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH 142 (175)
++.+++..........-+..++++..+++++.. +|+++|||||....+......+.+.+++++++|.|| +++||
T Consensus 127 l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~ti----ii~sH 200 (224)
T cd03220 127 IEFSELGDFIDLPVKTYSSGMKARLAFAIATAL--EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTV----ILVSH 200 (224)
T ss_pred HHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEE----EEEeC
Confidence 344454332222222223348999999999999 999999999966666666677788898887778899 99999
Q ss_pred chhhhhcCCcceeEeccchhh
Q 030541 143 VCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+.+++..++|+++++..+..+
T Consensus 201 ~~~~~~~~~d~i~~l~~G~i~ 221 (224)
T cd03220 201 DPSSIKRLCDRALVLEKGKIR 221 (224)
T ss_pred CHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999887643
No 59
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.3e-31 Score=217.97 Aligned_cols=159 Identities=16% Similarity=0.072 Sum_probs=118.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----ccCCC-------CccCCcccccc----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~-------~~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.+++ .+.+++.+++.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~ 107 (369)
T PRK11000 28 EGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK 107 (369)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCH
Confidence 599999999999999999999999999999999999876421 12222 22334433332
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-CC
Q 030541 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
..++++.+++..........-+..|+||..|+++++. +|++++||||....+...+..+.+.|++++++ |.
T Consensus 108 ~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~--~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~ 185 (369)
T PRK11000 108 EEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA--EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185 (369)
T ss_pred HHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 1234455555432222221223348999999999999 99999999996666666677788889988654 89
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
|+ +++||+++++..+||++++|..|..+..
T Consensus 186 tv----I~vTHd~~~~~~~~d~i~vl~~G~i~~~ 215 (369)
T PRK11000 186 TM----IYVTHDQVEAMTLADKIVVLDAGRVAQV 215 (369)
T ss_pred EE----EEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99 9999999999999999999998876543
No 60
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.3e-30 Score=195.99 Aligned_cols=142 Identities=18% Similarity=0.147 Sum_probs=113.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc------ccCCCCccCCccccccHHHHHHHhCCCCCCch
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYPVAMDIRELISLEDVMEELGLGPNGGL 74 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 74 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.+... ..+++.+ +....+...++.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~--q~~~~~~~~tv~~~~~------- 95 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP--EEPSLYENLTVRENLK------- 95 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe--cCCccccCCcHHHHhh-------
Confidence 599999999999999999999999999999999999976432 1223333 2222233234555442
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcce
Q 030541 75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCI 154 (175)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~ 154 (175)
-+..++++..++++++. +|++++||||....+....+.+.+++++++++|.|+ +++||+.+++.++++++
T Consensus 96 ----LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~ti----ii~th~~~~~~~~~d~i 165 (173)
T cd03230 96 ----LSGGMKQRLALAQALLH--DPELLILDEPTSGLDPESRREFWELLRELKKEGKTI----LLSSHILEEAERLCDRV 165 (173)
T ss_pred ----cCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEE----EEECCCHHHHHHhCCEE
Confidence 23358899999999999 999999999977777777888889999997778899 99999999999999999
Q ss_pred eEeccch
Q 030541 155 VCFCCTH 161 (175)
Q Consensus 155 ~~~~~~~ 161 (175)
+.++.+.
T Consensus 166 ~~l~~g~ 172 (173)
T cd03230 166 AILNNGR 172 (173)
T ss_pred EEEeCCC
Confidence 9998764
No 61
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8.6e-31 Score=216.33 Aligned_cols=159 Identities=13% Similarity=0.114 Sum_probs=119.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------ccCCCCc-------cCCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 30 ~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~ 109 (343)
T PRK11153 30 AGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLEL 109 (343)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHH
Confidence 599999999999999999999999999999999999976431 1233322 223333321
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..|+||..++++++. +|++++||||+...+......+.++|++++
T Consensus 110 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~--~p~iLlLDEPts~LD~~~~~~l~~~L~~l~ 187 (343)
T PRK11153 110 AGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALAS--NPKVLLCDEATSALDPATTRSILELLKDIN 187 (343)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 1234455555432211111223348999999999999 999999999966666677778888999986
Q ss_pred hC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 128 SR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 128 ~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
++ |.|| +++||+++++.++||++++++.|..+..
T Consensus 188 ~~~g~ti----ilvtH~~~~i~~~~d~v~~l~~G~i~~~ 222 (343)
T PRK11153 188 RELGLTI----VLITHEMDVVKRICDRVAVIDAGRLVEQ 222 (343)
T ss_pred HhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 54 8999 9999999999999999999998876543
No 62
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.97 E-value=1.1e-30 Score=217.65 Aligned_cols=160 Identities=13% Similarity=0.051 Sum_probs=120.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcc-----cccC-------CCCccCCcccccc----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENF-------DYPVAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----~~~~-------~~~~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++. .+.+ .+.+.+++.+++.
T Consensus 39 ~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~ 118 (375)
T PRK09452 39 NGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPA 118 (375)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCH
Confidence 59999999999999999999999999999999999997642 1222 2333444444432
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-CC
Q 030541 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
..++++.+++..........-+..|+||.+|+|+++. +|++++||||....+...+..+.+.|++++++ |.
T Consensus 119 ~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~--~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~ 196 (375)
T PRK09452 119 AEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVN--KPKVLLLDESLSALDYKLRKQMQNELKALQRKLGI 196 (375)
T ss_pred HHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC
Confidence 1223444455432222221122348999999999999 99999999996666666677888899998654 89
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
|+ +++||+.+++..++|++++|..|..+-++
T Consensus 197 ti----I~vTHd~~ea~~laDri~vl~~G~i~~~g 227 (375)
T PRK09452 197 TF----VFVTHDQEEALTMSDRIVVMRDGRIEQDG 227 (375)
T ss_pred EE----EEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99 99999999999999999999998766443
No 63
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.97 E-value=7.4e-31 Score=198.50 Aligned_cols=146 Identities=18% Similarity=0.152 Sum_probs=116.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccc-------cCCCCccCCccccccHHHHHHHhCCCCCCc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDYPVAMDIRELISLEDVMEELGLGPNGG 73 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++... .+++.+ ++++.+++.....
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~-----------q~l~~~gl~~~~~ 92 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP-----------QALELLGLAHLAD 92 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH-----------HHHHHcCCHhHhc
Confidence 5999999999999999999999999999999999998765321 112221 2666666654322
Q ss_pred hhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-CCcEEEEeeeehhchhhhhcCCc
Q 030541 74 LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPP 152 (175)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~ 152 (175)
.....-+..++++..+++++.. +|++++||||....+....+.+.+++++++++ +.|+ +++||+++++.+++|
T Consensus 93 ~~~~~LS~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~ti----ii~sh~~~~~~~~~d 166 (180)
T cd03214 93 RPFNELSGGERQRVLLARALAQ--EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTV----VMVLHDLNLAARYAD 166 (180)
T ss_pred CCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEE----EEEeCCHHHHHHhCC
Confidence 2222223448999999999999 99999999996666667777888899998766 8899 999999999999999
Q ss_pred ceeEeccchhh
Q 030541 153 CIVCFCCTHTV 163 (175)
Q Consensus 153 ~~~~~~~~~~~ 163 (175)
+++.+..+..+
T Consensus 167 ~~~~l~~g~i~ 177 (180)
T cd03214 167 RVILLKDGRIV 177 (180)
T ss_pred EEEEEECCEEE
Confidence 99999988654
No 64
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.97 E-value=1.6e-30 Score=202.21 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=115.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCc-------cCCccccccH------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELISL------ 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~~------ 59 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.+ .+++.+++..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~ 104 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR 104 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC
Confidence 599999999999999999999999999999999999875421 1233333 1122222210
Q ss_pred --------HHHHHHh-CCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCC
Q 030541 60 --------EDVMEEL-GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRN 130 (175)
Q Consensus 60 --------~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g 130 (175)
..+++.+ .+..........-+..++++..+++++.. +|++++||||....+....+.+.+++++++++|
T Consensus 105 ~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 182 (222)
T cd03224 105 RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMS--RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEG 182 (222)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhc--CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 1122222 11111111111112237899999999999 999999999977766777778888999987778
Q ss_pred CcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 131 FNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 131 ~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.|| +++||+++++.++|++++++..+..+.++
T Consensus 183 ~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 214 (222)
T cd03224 183 VTI----LLVEQNARFALEIADRAYVLERGRVVLEG 214 (222)
T ss_pred CEE----EEEeCCHHHHHHhccEEEEeeCCeEEEeC
Confidence 999 99999999999999999999988776543
No 65
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.97 E-value=1.6e-30 Score=215.28 Aligned_cols=160 Identities=15% Similarity=0.131 Sum_probs=118.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----ccCCCC-------ccCCcccccc----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYP-------VAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~-------~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.+++. +.+++.+++.
T Consensus 27 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~ 106 (353)
T PRK10851 27 SGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRE 106 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccccc
Confidence 499999999999999999999999999999999999976421 222222 2223322221
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh
Q 030541 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS 128 (175)
Q Consensus 59 ----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~ 128 (175)
..++++.+++..........-+..|+||..++|+++. +|++++||||....+...+..+.+.++++++
T Consensus 107 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~--~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 184 (353)
T PRK10851 107 RPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAV--EPQILLLDEPFGALDAQVRKELRRWLRQLHE 184 (353)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 1223444444322211111122338999999999999 9999999999666666677788889999876
Q ss_pred C-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 129 R-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 129 ~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+ |.|+ +++||+++++..++|++++|..|..+..+
T Consensus 185 ~~g~ti----i~vTHd~~ea~~~~Dri~vl~~G~i~~~g 219 (353)
T PRK10851 185 ELKFTS----VFVTHDQEEAMEVADRVVVMSQGNIEQAG 219 (353)
T ss_pred hcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 5 8999 99999999999999999999988765443
No 66
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.97 E-value=1.5e-30 Score=197.13 Aligned_cols=148 Identities=16% Similarity=0.100 Sum_probs=115.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCccCCc-cccccHHHHHHHhCCCCC
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPVAMDI-RELISLEDVMEELGLGPN 71 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ 71 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.+.... ...+...++.+++.+...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~ 104 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL 104 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh
Confidence 499999999999999999999999999999999999976532 12333331100 122333456666543211
Q ss_pred CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCC
Q 030541 72 GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLP 151 (175)
Q Consensus 72 ~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~ 151 (175)
-+..++++..+++++.. +|++++||||....+....+.+.++++++++++.|+ +++||+++++.++|
T Consensus 105 -------LS~G~~qrl~la~al~~--~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~ti----ii~sh~~~~~~~~~ 171 (182)
T cd03215 105 -------LSGGNQQKVVLARWLAR--DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAV----LLISSELDELLGLC 171 (182)
T ss_pred -------cCHHHHHHHHHHHHHcc--CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEE----EEEeCCHHHHHHhC
Confidence 23458999999999999 999999999977777777888888999987778999 99999999999999
Q ss_pred cceeEeccch
Q 030541 152 PCIVCFCCTH 161 (175)
Q Consensus 152 ~~~~~~~~~~ 161 (175)
++++++..+.
T Consensus 172 d~v~~l~~G~ 181 (182)
T cd03215 172 DRILVMYEGR 181 (182)
T ss_pred CEEEEecCCc
Confidence 9999998764
No 67
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.3e-31 Score=206.19 Aligned_cols=158 Identities=17% Similarity=0.108 Sum_probs=124.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcc--------cccCCCCccCCccccccHHHHHH--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDYPVAMDIRELISLEDVME-------- 64 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-------- 64 (175)
+|++++|+|+||||||||+++++|+++|++|+|.++|.+.. .+.+++.+. ++.+++...++.+
T Consensus 29 ~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQ-npd~q~~~~tV~~evafg~~n 107 (235)
T COG1122 29 KGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQ-NPDDQLFGPTVEDEVAFGLEN 107 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEE-CcccccccCcHHHHHhhchhh
Confidence 59999999999999999999999999999999999998744 133444442 3333443333444
Q ss_pred -----------------HhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHH
Q 030541 65 -----------------ELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 65 -----------------~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
.+++.....+ ....+| |+||.++|..++. +|++++||||+...+..++..+.+++++
T Consensus 108 ~g~~~~e~~~rv~~~l~~vgl~~~~~r--~p~~LSGGqkqRvaIA~vLa~--~P~iliLDEPta~LD~~~~~~l~~~l~~ 183 (235)
T COG1122 108 LGLPREEIEERVAEALELVGLEELLDR--PPFNLSGGQKQRVAIAGVLAM--GPEILLLDEPTAGLDPKGRRELLELLKK 183 (235)
T ss_pred cCCCHHHHHHHHHHHHHHcCchhhccC--CccccCCcceeeHHhhHHHHc--CCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 4444333211 223334 7888999999999 9999999999888888888899999999
Q ss_pred HHhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 126 LKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 126 l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++++ |+|+ +++||+++++.+++|++++|+.|..+.+++
T Consensus 184 L~~~~~~ti----i~~tHd~~~~~~~ad~v~vl~~G~i~~~g~ 222 (235)
T COG1122 184 LKEEGGKTI----IIVTHDLELVLEYADRVVVLDDGKILADGD 222 (235)
T ss_pred HHhcCCCeE----EEEeCcHHHHHhhCCEEEEEECCEEeecCC
Confidence 9877 6899 999999999999999999999999888876
No 68
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.3e-30 Score=210.59 Aligned_cols=160 Identities=11% Similarity=0.045 Sum_probs=118.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----------ccCCCCcc--------CCcccccc---
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPVA--------MDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~~--------~~~~~~~~--- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+. .++.+++.
T Consensus 32 ~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 111 (287)
T PRK13641 32 EGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGP 111 (287)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHH
Confidence 599999999999999999999999999999999999976421 12233321 12222221
Q ss_pred -------------HHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHH
Q 030541 59 -------------LEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 -------------~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..++++.+++.. ........-+..++||..|+++++. +|++++||||+...+......+.++++
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~--~p~lLlLDEPt~gLD~~~~~~l~~~l~ 189 (287)
T PRK13641 112 KNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAY--EPEILCLDEPAAGLDPEGRKEMMQLFK 189 (287)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 122334444431 1111111123348999999999999 999999999966666777788888999
Q ss_pred HHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 125 HLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 125 ~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++++|.|| +++||+++++..+||+++++..+..+.++
T Consensus 190 ~l~~~g~tv----livsH~~~~~~~~~d~v~~l~~G~i~~~g 227 (287)
T PRK13641 190 DYQKAGHTV----ILVTHNMDDVAEYADDVLVLEHGKLIKHA 227 (287)
T ss_pred HHHhCCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 987779999 99999999999999999999988766443
No 69
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.97 E-value=2.4e-30 Score=201.12 Aligned_cols=155 Identities=14% Similarity=0.065 Sum_probs=113.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----------ccCCCCc-------cCCcccccc----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPV-------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~-------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..++|.+ ..++.+++.
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 109 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLL 109 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHH
Confidence 599999999999999999999999999999999999876421 1233222 223332221
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..++|+..++++++. +|++++||||....+......+.++++++
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~~~l~~~ 187 (221)
T TIGR02211 110 IGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVN--QPSLVLADEPTGNLDNNNAKIIFDLMLEL 187 (221)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 1233444444322111111123348899999999999 99999999997776677777888899998
Q ss_pred Hh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchh
Q 030541 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHT 162 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~ 162 (175)
++ .+.|| +++||+++++.. +|+++++..+..
T Consensus 188 ~~~~~~ti----i~~tH~~~~~~~-~d~v~~l~~G~i 219 (221)
T TIGR02211 188 NRELNTSF----LVVTHDLELAKK-LDRVLEMKDGQL 219 (221)
T ss_pred HHhcCCEE----EEEeCCHHHHhh-cCEEEEEeCCEe
Confidence 65 48899 999999999865 799999988754
No 70
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2.9e-30 Score=218.70 Aligned_cols=161 Identities=17% Similarity=0.159 Sum_probs=121.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc---------------ccCCCCccCCcccccc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------------~~~~~~~~~~~~~~~~------- 58 (175)
+|||++|+|.||||||||+|+|+|.++|++|+|.++|++... |+....+.+++.+++.
T Consensus 33 ~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~ 112 (500)
T COG1129 33 PGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTR 112 (500)
T ss_pred CceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhccccccc
Confidence 599999999999999999999999999999999999986431 3334445444444432
Q ss_pred -------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHH
Q 030541 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 59 -------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
...+++.+++..........-+..++|-..++|++.. +++++|||||+...-....+.+.+++++
T Consensus 113 ~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~--~arllIlDEPTaaLt~~E~~~Lf~~ir~ 190 (500)
T COG1129 113 RFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSF--DARVLILDEPTAALTVKETERLFDLIRR 190 (500)
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 1334444544311111111223348888999999999 9999999999555444555667779999
Q ss_pred HHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 126 LKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 126 l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++++|.+| +++||+++|+.++||++++|.-|..+-...
T Consensus 191 Lk~~Gv~i----i~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 191 LKAQGVAI----IYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHhCCCEE----EEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99999999 999999999999999999999887665433
No 71
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.4e-30 Score=210.48 Aligned_cols=163 Identities=14% Similarity=0.064 Sum_probs=120.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----------ccCCCCcc--------CCcccccc---
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPVA--------MDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~~--------~~~~~~~~--- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|+++|.++.. ..+++.+. .++.+++.
T Consensus 31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~ 110 (288)
T PRK13643 31 KGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGP 110 (288)
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHH
Confidence 599999999999999999999999999999999999976421 12233321 12222211
Q ss_pred -------------HHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHH
Q 030541 59 -------------LEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 -------------~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..++++.+++.. ........-+..++||..++++++. +|++++||||+...+...+..+.++++
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~--~p~illLDEPt~gLD~~~~~~l~~~l~ 188 (288)
T PRK13643 111 QNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAM--EPEVLVLDEPTAGLDPKARIEMMQLFE 188 (288)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHh--CCCEEEEECCccCCCHHHHHHHHHHHH
Confidence 122334445431 1111111123348999999999999 999999999966666777778888999
Q ss_pred HHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhhh
Q 030541 125 HLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYS 169 (175)
Q Consensus 125 ~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (175)
+++++|.|| +++||+++++..+||++++|..+..+.+++..
T Consensus 189 ~l~~~g~ti----l~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~ 229 (288)
T PRK13643 189 SIHQSGQTV----VLVTHLMDDVADYADYVYLLEKGHIISCGTPS 229 (288)
T ss_pred HHHHCCCEE----EEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 987779999 99999999999999999999999888766543
No 72
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.4e-30 Score=203.92 Aligned_cols=163 Identities=18% Similarity=0.159 Sum_probs=120.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcc-------------cccCCCCc-------cCCcccccc--
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------------AENFDYPV-------AMDIRELIS-- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-------------~~~~~~~~-------~~~~~~~~~-- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++. ...++|.+ ..++.+++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~ 106 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEA 106 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHH
Confidence 59999999999999999999999999999999999987541 11223322 223333221
Q ss_pred ---------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHH
Q 030541 59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
..+.++.+++..........-+..++++..+++++.. +|++++||||....+......+.+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~--~p~llilDEPt~~LD~~~~~~l~~~l 184 (242)
T PRK11124 107 PCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMM--EPQVLLFDEPTAALDPEITAQIVSII 184 (242)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCcCCHHHHHHHHHHH
Confidence 1223344444322111111123348899999999999 99999999996666666777888899
Q ss_pred HHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhhh
Q 030541 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYS 169 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (175)
++++++|.|+ +++||+.+++.+++|+++++..+..+.+.++.
T Consensus 185 ~~~~~~~~ti----i~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~ 226 (242)
T PRK11124 185 RELAETGITQ----VIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHHHcCCEE----EEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9987778999 99999999999999999999988877665543
No 73
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.97 E-value=2.4e-30 Score=206.01 Aligned_cols=160 Identities=15% Similarity=0.064 Sum_probs=118.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--ccCC-------CCccCCcccccc----------HHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFD-------YPVAMDIRELIS----------LED 61 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--~~~~-------~~~~~~~~~~~~----------~~~ 61 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.+... +.++ +.+..++.+++. ..+
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~ 116 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQ 116 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHH
Confidence 599999999999999999999999999999999998765311 1122 222233333321 123
Q ss_pred HHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh-CCCcEEEEeeee
Q 030541 62 VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLD 140 (175)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvli~~l~~ 140 (175)
+++.+++..........-+..++|+..+++++.. +|++++||||....+......+.++|+++.+ ++.|| +++
T Consensus 117 ~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~--~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tv----iiv 190 (257)
T PRK11247 117 ALAAVGLADRANEWPAALSGGQKQRVALARALIH--RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTV----LLV 190 (257)
T ss_pred HHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEE----EEE
Confidence 4555555432212221223348999999999999 9999999999666666677788888988754 58999 999
Q ss_pred hhchhhhhcCCcceeEeccchhhHHh
Q 030541 141 SQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 141 sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
||+++++.++||+++++..+..+.+.
T Consensus 191 sHd~~~~~~~~d~i~~l~~G~i~~~~ 216 (257)
T PRK11247 191 THDVSEAVAMADRVLLIEEGKIGLDL 216 (257)
T ss_pred eCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999988876543
No 74
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.4e-30 Score=209.00 Aligned_cols=161 Identities=14% Similarity=0.124 Sum_probs=119.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCcc--------CCcccccc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA--------MDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~--------~~~~~~~~------- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.+. .++.+++.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 109 (274)
T PRK13647 30 EGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMG 109 (274)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcC
Confidence 599999999999999999999999999999999999976532 12333331 12222211
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC
Q 030541 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
...+++.+++..........-+.+++||..++++++. +|++++||||+...+......+.+++++++++
T Consensus 110 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 187 (274)
T PRK13647 110 LDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAM--DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ 187 (274)
T ss_pred CCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC
Confidence 1223333444322111111123348899999999999 99999999997776777778888899998777
Q ss_pred CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|.|| +++||+++++.++||+++++..|..+.+++
T Consensus 188 g~ti----li~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 221 (274)
T PRK13647 188 GKTV----IVATHDVDLAAEWADQVIVLKEGRVLAEGD 221 (274)
T ss_pred CCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 8999 999999999999999999999988765554
No 75
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.9e-30 Score=209.51 Aligned_cols=160 Identities=18% Similarity=0.112 Sum_probs=120.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc---------ccCCCCcc--------CCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVA--------MDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------~~~~~~~~--------~~~~~~~~----- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++|.+. .++.+++.
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 111 (287)
T PRK13637 32 DGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN 111 (287)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHH
Confidence 599999999999999999999999999999999999976532 12233221 12222221
Q ss_pred -----------HHHHHHHhCCC--CCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHH
Q 030541 59 -----------LEDVMEELGLG--PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 59 -----------~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
...+++.+++. .........-+..++||..++++++. +|++++||||+...+...+..+.+++++
T Consensus 112 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~--~P~llllDEPt~gLD~~~~~~l~~~l~~ 189 (287)
T PRK13637 112 LGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM--EPKILILDEPTAGLDPKGRDEILNKIKE 189 (287)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc--CCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 12445555664 11112222223458999999999999 9999999999777667778888889999
Q ss_pred HHhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 126 LKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 126 l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++++ |.|| +++||+++++..+||+++++..|..+.++
T Consensus 190 l~~~~g~tv----i~vtHd~~~~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 190 LHKEYNMTI----ILVSHSMEDVAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 8764 8999 99999999999999999999888766543
No 76
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.8e-30 Score=204.61 Aligned_cols=153 Identities=13% Similarity=0.084 Sum_probs=113.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccc--cCCC-------CccCCcccccc-------------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--NFDY-------PVAMDIRELIS------------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~--~~~~-------~~~~~~~~~~~------------- 58 (175)
+|++++|+||||||||||+|+|+|+.+|++|+|.++|.++... ..++ .+..++.+++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 105 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQR 105 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHH
Confidence 5999999999999999999999999999999999998764211 1122 12223322221
Q ss_pred ---HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH-hCCCcEE
Q 030541 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVC 134 (175)
Q Consensus 59 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-~~g~tvl 134 (175)
..++++.+++..........-+..+++|..+++++.. +|+++|||||+...+......+.++|++++ ++|.||
T Consensus 106 ~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tv- 182 (255)
T PRK11248 106 LEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAA--NPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQV- 182 (255)
T ss_pred HHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEE-
Confidence 1234445555332111111123348899999999999 999999999977777777788888999984 458999
Q ss_pred EEeeeehhchhhhhcCCcceeEecc
Q 030541 135 AVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 135 i~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
+++||+++++..+||+++++..
T Consensus 183 ---iivsH~~~~~~~~~d~i~~l~~ 204 (255)
T PRK11248 183 ---LLITHDIEEAVFMATELVLLSP 204 (255)
T ss_pred ---EEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999973
No 77
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.9e-30 Score=203.53 Aligned_cols=159 Identities=20% Similarity=0.182 Sum_probs=118.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc-------cCCcccccc--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV-------AMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~-------~~~~~~~~~-------- 58 (175)
+|++++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..++|.+ ..++.+++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 105 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKW 105 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCC
Confidence 599999999999999999999999999999999999875421 1222222 223333221
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh
Q 030541 59 --------LEDVMEELGLGPNGGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS 128 (175)
Q Consensus 59 --------~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~ 128 (175)
..++++.+++............+ .++|+..+++++.. +|++++||||....+....+.+.+.++++++
T Consensus 106 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~~~L~~~~~ 183 (242)
T cd03295 106 PKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAA--DPPLLLMDEPFGALDPITRDQLQEEFKRLQQ 183 (242)
T ss_pred CHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 12344555554300011122333 48999999999999 9999999999666666777788889999876
Q ss_pred C-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 129 R-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 129 ~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+ |.|| +++||+.+++.+++|+++++..|..+..
T Consensus 184 ~~g~tv----ii~sH~~~~~~~~~d~i~~l~~G~i~~~ 217 (242)
T cd03295 184 ELGKTI----VFVTHDIDEAFRLADRIAIMKNGEIVQV 217 (242)
T ss_pred HcCCEE----EEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 4 8999 9999999999999999999998877643
No 78
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.7e-30 Score=204.91 Aligned_cols=161 Identities=16% Similarity=0.099 Sum_probs=116.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCc-------cCCcccccc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~------- 58 (175)
+|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.+.+ .+++.+++.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 109 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQL 109 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccc
Confidence 599999999999999999999999999999999999976421 1122222 122222111
Q ss_pred ------------------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccc
Q 030541 59 ------------------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFT 114 (175)
Q Consensus 59 ------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~ 114 (175)
..+.++.+++..........-+..+++|..+++++.. +|++++||||....+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~ 187 (255)
T PRK11300 110 KTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVT--QPEILMLDEPAAGLNPK 187 (255)
T ss_pred cchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHH
Confidence 0112223333221111111122348899999999999 99999999996666677
Q ss_pred cchhHHHHHHHHHhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 115 HVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 115 ~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.+..+.++|.+++++ |.|| +++||+++++.++||+++++..+..+..++
T Consensus 188 ~~~~l~~~L~~~~~~~~~ti----i~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 237 (255)
T PRK11300 188 ETKELDELIAELRNEHNVTV----LLIEHDMKLVMGISDRIYVVNQGTPLANGT 237 (255)
T ss_pred HHHHHHHHHHHHHhhcCCEE----EEEeCCHHHHHHhCCEEEEEECCeEEecCC
Confidence 777888899998765 8999 999999999999999999999888765433
No 79
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=8.7e-31 Score=205.54 Aligned_cols=161 Identities=19% Similarity=0.134 Sum_probs=127.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccccc------CCCCccC--C------cccccc--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAEN------FDYPVAM--D------IRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~------~~~~~~~--~------~~~~~~-------- 58 (175)
+|+++|++|+|||||||++|+++|++.|++|.|.++|++|..++ +++.... + ..+-+.
T Consensus 49 ~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~I 128 (325)
T COG4586 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEI 128 (325)
T ss_pred CCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhC
Confidence 59999999999999999999999999999999999999885522 2111110 0 011111
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH-hC
Q 030541 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SR 129 (175)
Q Consensus 59 --------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-~~ 129 (175)
.....+.+++.....+....-++.|+.|.-|+.++.+ +|++++||||+...+-..++.+++++++.+ ++
T Consensus 129 pd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh--~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~ 206 (325)
T COG4586 129 PDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLH--PPKVLFLDEPTVGLDVNAQANIREFLKEYNEER 206 (325)
T ss_pred CHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcC--CCcEEEecCCccCcchhHHHHHHHHHHHHHHhh
Confidence 2334455666655555555556679999999999999 999999999977777778888999999986 46
Q ss_pred CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+.|| +++||++.++..+|+++++++.|..++.++
T Consensus 207 ~aTV----llTTH~~~di~~lc~rv~~I~~Gqlv~dg~ 240 (325)
T COG4586 207 QATV----LLTTHIFDDIATLCDRVLLIDQGQLVFDGT 240 (325)
T ss_pred CceE----EEEecchhhHHHhhhheEEeeCCcEeeccc
Confidence 9999 999999999999999999999999988643
No 80
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.97 E-value=3.7e-30 Score=200.52 Aligned_cols=160 Identities=17% Similarity=0.132 Sum_probs=119.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc---ccCCCCc-------cCCcccccc------------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDYPV-------AMDIRELIS------------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---~~~~~~~-------~~~~~~~~~------------ 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+++.+ ..++.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~ 104 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSR 104 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHH
Confidence 599999999999999999999999999999999999875421 1122221 223333321
Q ss_pred HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEee
Q 030541 59 LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (175)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l 138 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.+++++++++|.|| +
T Consensus 105 ~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~--~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~ti----i 178 (223)
T TIGR03740 105 IDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLN--HPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITV----I 178 (223)
T ss_pred HHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhc--CCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEE----E
Confidence 1234444555432211111122338899999999999 999999999977767777788888999987778999 9
Q ss_pred eehhchhhhhcCCcceeEeccchhhHHh
Q 030541 139 LDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++||+.+++.++|++++.+..+..+.++
T Consensus 179 i~sH~~~~~~~~~d~i~~l~~g~i~~~~ 206 (223)
T TIGR03740 179 LSSHILSEVQQLADHIGIISEGVLGYQG 206 (223)
T ss_pred EEcCCHHHHHHhcCEEEEEeCCEEEEec
Confidence 9999999999999999999888765544
No 81
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.97 E-value=3.8e-30 Score=199.11 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=112.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcc--cccCCCCcc---------CCcccccc-----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVA---------MDIRELIS----------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~--~~~~~~~~~---------~~~~~~~~----------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++. ...++|.+. .++.+++.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~ 103 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFR 103 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhcccccccccc
Confidence 59999999999999999999999999999999999997642 112222221 12222110
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC
Q 030541 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
..++++.+++..........-+..++|+..+++++.. +|++++||||+...+...+..+.+++++++++
T Consensus 104 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 181 (213)
T cd03235 104 RLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQ--DPDLLLLDEPFAGVDPKTQEDIYELLRELRRE 181 (213)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc
Confidence 1223333444321111111122348899999999999 99999999997766677777888899998777
Q ss_pred CCcEEEEeeeehhchhhhhcCCcceeEeccc
Q 030541 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
|.|| +++||+++++.++||+++++..+
T Consensus 182 ~~tv----i~~sH~~~~~~~~~d~i~~l~~~ 208 (213)
T cd03235 182 GMTI----LVVTHDLGLVLEYFDRVLLLNRT 208 (213)
T ss_pred CCEE----EEEeCCHHHHHHhcCEEEEEcCc
Confidence 8999 99999999999999999999764
No 82
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=3.7e-30 Score=202.70 Aligned_cols=160 Identities=14% Similarity=0.169 Sum_probs=118.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCc-------cCCcccccc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+ .+++.+++.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~ 106 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDK 106 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccc
Confidence 599999999999999999999999999999999999976421 1122222 223322211
Q ss_pred -----------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHH
Q 030541 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN 121 (175)
Q Consensus 59 -----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~ 121 (175)
..+.++.+++..........-+..++++..++++++. +|++++||||....+....+.+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~--~p~~lllDEPt~~LD~~~~~~l~~ 184 (242)
T TIGR03411 107 SVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQ--DPKLLLLDEPVAGMTDEETEKTAE 184 (242)
T ss_pred ccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCccCCCHHHHHHHHH
Confidence 1223344444332211111223348899999999999 999999999966666777778888
Q ss_pred HHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 122 FVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 122 ~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++++++ +.|| +++||+++++.++||+++++..+..+.+++
T Consensus 185 ~l~~~~~-~~ti----i~~sH~~~~~~~~~d~i~~l~~g~~~~~~~ 225 (242)
T TIGR03411 185 LLKSLAG-KHSV----VVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225 (242)
T ss_pred HHHHHhc-CCEE----EEEECCHHHHHHhCCEEEEEECCeEEeeCC
Confidence 9999865 6899 999999999999999999999888776554
No 83
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.97 E-value=3.2e-30 Score=204.01 Aligned_cols=160 Identities=16% Similarity=0.137 Sum_probs=118.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc---------------ccCCCCc-------cCCcccccc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPV-------AMDIRELIS 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------------~~~~~~~-------~~~~~~~~~ 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 107 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENII 107 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHH
Confidence 599999999999999999999999999999999998865321 1122222 223333221
Q ss_pred -----------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHH
Q 030541 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN 121 (175)
Q Consensus 59 -----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~ 121 (175)
..++++.+++..........-+..++||..+++++.. +|++++||||+...+...+..+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~~ 185 (250)
T PRK11264 108 EGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM--RPEVILFDEPTSALDPELVGEVLN 185 (250)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHHH
Confidence 1123444444322111111123348999999999999 999999999976666777778888
Q ss_pred HHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 122 FVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 122 ~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++++++++|.|| +++||+++++.++||+++++..+..+...
T Consensus 186 ~l~~~~~~~~tv----i~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 226 (250)
T PRK11264 186 TIRQLAQEKRTM----VIVTHEMSFARDVADRAIFMDQGRIVEQG 226 (250)
T ss_pred HHHHHHhcCCEE----EEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 999987778999 99999999999999999999988766543
No 84
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.97 E-value=4.9e-30 Score=192.09 Aligned_cols=158 Identities=15% Similarity=0.138 Sum_probs=123.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------ccCCCCc-------cCCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||++.|+||||||||||+|.|++..+|++|+|+++|.++.. +.++.++ ..++++++.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v 106 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV 106 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhc
Confidence 699999999999999999999999999999999999988532 2333332 334444443
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..+.......-+..++||..+||++.+ +|++|+.|||+...+-.....+++++.+++
T Consensus 107 ~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~--~P~vLlADEPTGNLDp~~s~~im~lfeein 184 (223)
T COG2884 107 IGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN--QPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184 (223)
T ss_pred cCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc--CCCeEeecCCCCCCChHHHHHHHHHHHHHh
Confidence 2345555565544322222223348999999999999 999999999977766766777888999999
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhH
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
..|.|| +++||+.+.+.++-.+++.++.|..++
T Consensus 185 r~GtTV----l~ATHd~~lv~~~~~rvl~l~~Grl~~ 217 (223)
T COG2884 185 RLGTTV----LMATHDLELVNRMRHRVLALEDGRLVR 217 (223)
T ss_pred hcCcEE----EEEeccHHHHHhccCcEEEEeCCEEEe
Confidence 999999 999999999999999999998887654
No 85
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2e-30 Score=207.63 Aligned_cols=159 Identities=18% Similarity=0.051 Sum_probs=117.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----------ccCCCCc-------cCCcccccc----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPV-------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~-------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 128 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 128 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHH
Confidence 599999999999999999999999999999999999875421 1222222 223333221
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..++|+..+++++.. +|+++|||||....+....+.+.++++++
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~--~p~illLDEPt~~LD~~~~~~l~~~l~~~ 206 (269)
T cd03294 129 VQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAV--DPDILLMDEAFSALDPLIRREMQDELLRL 206 (269)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 1223444444322111111123348999999999999 99999999997776677777888899998
Q ss_pred Hh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
++ +|.|| +++||+++++.++||+++++..|..+.+
T Consensus 207 ~~~~g~ti----ii~tH~~~~~~~~~d~v~~l~~G~i~~~ 242 (269)
T cd03294 207 QAELQKTI----VFITHDLDEALRLGDRIAIMKDGRLVQV 242 (269)
T ss_pred HHhcCCEE----EEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 65 48999 9999999999999999999988776543
No 86
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=3.9e-30 Score=203.58 Aligned_cols=157 Identities=14% Similarity=0.100 Sum_probs=116.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcc--cccCCCCccCCcccccc------------HHHHHHHh
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS------------LEDVMEEL 66 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~--~~~~~~~~~~~~~~~~~------------~~~~~~~~ 66 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|..+. .+.....+..++.+++. ..++++.+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l 103 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPL 103 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHc
Confidence 48999999999999999999999999999999999885321 12222222234443331 12344555
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh-CCCcEEEEeeeehhchh
Q 030541 67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQVCI 145 (175)
Q Consensus 67 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~ 145 (175)
++..........-+..++|+..++++++. +|++++||||+...+...+..+.++++++++ .+.|| +++||+++
T Consensus 104 ~l~~~~~~~~~~LSgGe~qrv~iaraL~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti----iivsHd~~ 177 (246)
T cd03237 104 QIEQILDREVPELSGGELQRVAIAACLSK--DADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTA----FVVEHDII 177 (246)
T ss_pred CCHHHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE----EEEeCCHH
Confidence 55322111111123348999999999999 9999999999777667777788889999865 48999 99999999
Q ss_pred hhhcCCcceeEeccchhh
Q 030541 146 RFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~ 163 (175)
++..+||+++++.....+
T Consensus 178 ~~~~~~d~i~~l~~~~~~ 195 (246)
T cd03237 178 MIDYLADRLIVFEGEPSV 195 (246)
T ss_pred HHHHhCCEEEEEcCCCee
Confidence 999999999999776544
No 87
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.97 E-value=2.5e-30 Score=214.58 Aligned_cols=160 Identities=17% Similarity=0.053 Sum_probs=119.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----------ccCCC-------CccCCcccccc----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~-------~~~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++ .+.+++.+++.
T Consensus 18 ~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~ 97 (363)
T TIGR01186 18 KGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPE 97 (363)
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 599999999999999999999999999999999999976431 22333 23344444432
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..|+||..++|++.. +|++++||||....+...+..+.+.+.++
T Consensus 98 ~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~--~p~iLLlDEP~saLD~~~r~~l~~~l~~l 175 (363)
T TIGR01186 98 LLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAA--EPDILLMDEAFSALDPLIRDSMQDELKKL 175 (363)
T ss_pred HcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 1234555555432222221123348999999999999 99999999995555555666777888888
Q ss_pred Hh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++ .|+|| +++||+++++.++||++++|..|..+..+
T Consensus 176 ~~~~~~Ti----i~vTHd~~ea~~~~drI~vl~~G~iv~~g 212 (363)
T TIGR01186 176 QATLQKTI----VFITHDLDEAIRIGDRIVIMKAGEIVQVG 212 (363)
T ss_pred HHhcCCEE----EEEeCCHHHHHHhCCEEEEEeCCEEEeeC
Confidence 65 48999 99999999999999999999988765443
No 88
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.97 E-value=5.2e-30 Score=201.36 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=115.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc------ccCCCCc-------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYPV-------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~~-------~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~ 105 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLS 105 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCC
Confidence 599999999999999999999999999999999999876421 1122222 222222221
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh-CC
Q 030541 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RN 130 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g 130 (175)
..++++.+++..........-+.+++||..++++++. +|++++||||....+....+.+.++++++++ +|
T Consensus 106 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 183 (236)
T TIGR03864 106 RAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLH--RPALLLLDEPTVGLDPASRAAIVAHVRALCRDQG 183 (236)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCC
Confidence 1233444444322111111223348899999999999 9999999999776667777788889999864 58
Q ss_pred CcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 131 FNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 131 ~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
.|+ +++||+++++.. ||+++++..+..+..
T Consensus 184 ~ti----ii~sH~~~~~~~-~d~i~~l~~G~i~~~ 213 (236)
T TIGR03864 184 LSV----LWATHLVDEIEA-DDRLVVLHRGRVLAD 213 (236)
T ss_pred CEE----EEEecChhhHhh-CCEEEEEeCCeEEEe
Confidence 999 999999999975 999999988776544
No 89
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.97 E-value=4.5e-30 Score=193.09 Aligned_cols=139 Identities=19% Similarity=0.174 Sum_probs=111.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCccCCccccccHHHHHHHhCCCCCCc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNGG 73 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.+... ..+++.+ +....+. .++.+++
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~--q~~~~~~-~tv~~~l------- 96 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLP--QDDELFS-GSIAENI------- 96 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEEC--CCCcccc-CcHHHHC-------
Confidence 599999999999999999999999999999999999876422 2233333 2223333 2555554
Q ss_pred hhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcc
Q 030541 74 LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPC 153 (175)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~ 153 (175)
-+..++||..++++++. +|++++||||....+...+..+.+++++++++|.|+ +++||+++++ +.||+
T Consensus 97 -----LS~G~~qrv~la~al~~--~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti----i~~sh~~~~~-~~~d~ 164 (173)
T cd03246 97 -----LSGGQRQRLGLARALYG--NPRILVLDEPNSHLDVEGERALNQAIAALKAAGATR----IVIAHRPETL-ASADR 164 (173)
T ss_pred -----cCHHHHHHHHHHHHHhc--CCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEE----EEEeCCHHHH-HhCCE
Confidence 23458999999999999 999999999966666777778888999987778999 9999999988 57999
Q ss_pred eeEeccch
Q 030541 154 IVCFCCTH 161 (175)
Q Consensus 154 ~~~~~~~~ 161 (175)
++.+..+.
T Consensus 165 v~~l~~G~ 172 (173)
T cd03246 165 ILVLEDGR 172 (173)
T ss_pred EEEEECCC
Confidence 99998764
No 90
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.1e-30 Score=209.96 Aligned_cols=160 Identities=19% Similarity=0.109 Sum_probs=119.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcc-------------------------------cccCCCCc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------------------------------AENFDYPV 49 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-------------------------------~~~~~~~~ 49 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.+.. .+.+++.+
T Consensus 32 ~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~ 111 (305)
T PRK13651 32 QGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVF 111 (305)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEe
Confidence 59999999999999999999999999999999999875421 11223333
Q ss_pred c--------CCcccccc----------------HHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEE
Q 030541 50 A--------MDIRELIS----------------LEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVF 104 (175)
Q Consensus 50 ~--------~~~~~~~~----------------~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliL 104 (175)
. .++.+++. ..++++.+++.. ........-+.+++|+..++++++. +|+++||
T Consensus 112 Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~--~P~lLlL 189 (305)
T PRK13651 112 QFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAM--EPDFLVF 189 (305)
T ss_pred eCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHh--CCCEEEE
Confidence 1 12222211 133445555531 1111111223348999999999999 9999999
Q ss_pred eCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 105 DCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 105 DEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
|||+...+......+.+++++++++|.|| +++||+++++.++||+++++..|..+.++
T Consensus 190 DEPt~~LD~~~~~~l~~~l~~l~~~g~ti----iivtHd~~~~~~~adrv~vl~~G~i~~~g 247 (305)
T PRK13651 190 DEPTAGLDPQGVKEILEIFDNLNKQGKTI----ILVTHDLDNVLEWTKRTIFFKDGKIIKDG 247 (305)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEE----EEEeeCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99977767777888888999998779999 99999999999999999999998876554
No 91
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.5e-30 Score=202.21 Aligned_cols=161 Identities=14% Similarity=0.141 Sum_probs=116.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCc-------cCCcccccc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 107 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD 107 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc
Confidence 599999999999999999999999999999999999875421 1223322 112222111
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh
Q 030541 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS 128 (175)
Q Consensus 59 ----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~ 128 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+......+.++++++++
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 185 (241)
T PRK10895 108 DLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAA--NPKFILLDEPFAGVDPISVIDIKRIIEHLRD 185 (241)
T ss_pred ccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHh
Confidence 1122333333221111111112238899999999999 9999999999666666667778888988877
Q ss_pred CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 129 RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 129 ~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+|.|| +++||+++++.++||+++.++.+..+.+++
T Consensus 186 ~g~ti----ii~sH~~~~~~~~~d~v~~l~~G~i~~~~~ 220 (241)
T PRK10895 186 SGLGV----LITDHNVRETLAVCERAYIVSQGHLIAHGT 220 (241)
T ss_pred cCCEE----EEEEcCHHHHHHhcCEEEEEeCCeEEeeCC
Confidence 78999 999999999999999999999887765544
No 92
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.3e-30 Score=213.49 Aligned_cols=159 Identities=13% Similarity=0.107 Sum_probs=119.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----------ccCCCC-------ccCCcccccc----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYP-------VAMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~-------~~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++. +.+++.+++.
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 102 (352)
T PRK11144 23 AQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA 102 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh
Confidence 599999999999999999999999999999999999865321 122222 2234433332
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-CC
Q 030541 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
..++++.+++..........-+..++||..++++++. +|++++||||....+...++.+.+.|++++++ |.
T Consensus 103 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~--~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~ 180 (352)
T PRK11144 103 KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLT--APELLLMDEPLASLDLPRKRELLPYLERLAREINI 180 (352)
T ss_pred hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 2345555565432222222223348999999999999 99999999996666666677888899988665 89
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
|+ +++||+++++..++|+++++..+..+.+
T Consensus 181 ti----i~vTHd~~~~~~~~d~i~~l~~G~i~~~ 210 (352)
T PRK11144 181 PI----LYVSHSLDEILRLADRVVVLEQGKVKAF 210 (352)
T ss_pred eE----EEEecCHHHHHHhCCEEEEEeCCEEEEe
Confidence 99 9999999999999999999988876543
No 93
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.97 E-value=3.7e-30 Score=213.39 Aligned_cols=159 Identities=15% Similarity=0.115 Sum_probs=118.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----------ccCCCC-------ccCCcccccc----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYP-------VAMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~-------~~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.+++. +.+++.+++.
T Consensus 22 ~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 101 (354)
T TIGR02142 22 GQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMK 101 (354)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhh
Confidence 599999999999999999999999999999999999876421 112222 2223333321
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh
Q 030541 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS 128 (175)
Q Consensus 59 ----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~ 128 (175)
..++++.+++..........-+..|+||..++++++. +|++++||||....+...++.+.++|+++++
T Consensus 102 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~--~p~lllLDEPts~LD~~~~~~l~~~L~~l~~ 179 (354)
T TIGR02142 102 RARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLS--SPRLLLMDEPLAALDDPRKYEILPYLERLHA 179 (354)
T ss_pred ccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH
Confidence 1233444444332211111123348999999999999 9999999999666667777788889999876
Q ss_pred C-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 129 R-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 129 ~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+ |.|+ +++||+++++..++|+++++..|..+.+
T Consensus 180 ~~g~ti----iivtH~~~~~~~~~d~i~~l~~G~i~~~ 213 (354)
T TIGR02142 180 EFGIPI----LYVSHSLQEVLRLADRVVVLEDGRVAAA 213 (354)
T ss_pred hcCCEE----EEEecCHHHHHHhCCEEEEEeCCEEEEE
Confidence 5 8999 9999999999999999999998876543
No 94
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.5e-30 Score=201.88 Aligned_cols=161 Identities=14% Similarity=0.131 Sum_probs=115.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----ccCCCCc-------cCCcccccc----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYPV-------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~~-------~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++|.+ ..++.+++.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 103 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLN 103 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCCC
Confidence 499999999999999999999999999999999999976421 1222222 112221110
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh-CCC
Q 030541 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~ 131 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.++++++++ +|.
T Consensus 104 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~ 181 (232)
T PRK10771 104 AAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVR--EQPILLLDEPFSALDPALRQEMLTLVSQVCQERQL 181 (232)
T ss_pred HHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 1122333333211111111112237899999999999 9999999999666666677778889998865 488
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|+ +++||+++++..+|++++++..+..+.+++
T Consensus 182 ti----ii~sH~~~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 182 TL----LMVSHSLEDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred EE----EEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99 999999999999999999999887765544
No 95
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.97 E-value=4.4e-30 Score=198.94 Aligned_cols=159 Identities=16% Similarity=0.133 Sum_probs=115.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----ccCCCCc-------cCCcccccc----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYPV-------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~~-------~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..+++.+ .++..+++.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~ 102 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLN 102 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCcc
Confidence 599999999999999999999999999999999999876421 1122222 122222211
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-CC
Q 030541 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
..++++.+++..........-+.++++|..+++++.. +|++++||||....+......+.+++++++++ +.
T Consensus 103 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~ 180 (213)
T TIGR01277 103 AEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVR--PNPILLLDEPFSALDPLLREEMLALVKQLCSERQR 180 (213)
T ss_pred HHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCC
Confidence 1123334444321111111123348899999999999 99999999996666666777788899988654 88
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
|| +++||+.+++.++||+++++..+..+..
T Consensus 181 ti----i~vsh~~~~~~~~~d~v~~l~~g~i~~~ 210 (213)
T TIGR01277 181 TL----LMVTHHLSDARAIASQIAVVSQGKIKVV 210 (213)
T ss_pred EE----EEEeCCHHHHHhhcCeEEEEECCeEEEe
Confidence 99 9999999999999999999988776543
No 96
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=4.1e-30 Score=201.04 Aligned_cols=161 Identities=17% Similarity=0.122 Sum_probs=114.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCcc-------CCccccccH------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPVA-------MDIRELISL------ 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~~-------~~~~~~~~~------ 59 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.+... +.++|.+. .++.+++..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP 104 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC
Confidence 599999999999999999999999999999999999865421 12333331 122222110
Q ss_pred -------HHHHHHhC-CCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-C
Q 030541 60 -------EDVMEELG-LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-N 130 (175)
Q Consensus 60 -------~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g 130 (175)
..+++.++ +..........-+..++++..+++++.. +|++++||||....+......+.+++.+++++ +
T Consensus 105 ~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~--~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~ 182 (230)
T TIGR03410 105 RRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVT--RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGG 182 (230)
T ss_pred cchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCC
Confidence 11112221 1110000111112237899999999999 99999999996666677777888899998764 8
Q ss_pred CcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 131 FNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 131 ~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.|| +++||+++++..+|++++++..+..+.+++
T Consensus 183 ~ti----i~~sH~~~~~~~~~d~v~~l~~g~i~~~~~ 215 (230)
T TIGR03410 183 MAI----LLVEQYLDFARELADRYYVMERGRVVASGA 215 (230)
T ss_pred cEE----EEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 999 999999999999999999999887665443
No 97
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.97 E-value=5.3e-30 Score=199.86 Aligned_cols=157 Identities=15% Similarity=0.107 Sum_probs=114.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------ccCCCCc---------cCCccccccH--
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV---------AMDIRELISL-- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~---------~~~~~~~~~~-- 59 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++|.+ ..++.+++..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~ 109 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPL 109 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHH
Confidence 599999999999999999999999999999999999876421 1122222 1222222210
Q ss_pred ----------------HHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHH
Q 030541 60 ----------------EDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 60 ----------------~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
.+.++.+++.. ........-+..++|+..+++++.. +|++++||||....+....+.+.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~~~ 187 (228)
T cd03257 110 RIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALAL--NPKLLIADEPTSALDVSVQAQILDL 187 (228)
T ss_pred HhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhc--CCCEEEecCCCCCCCHHHHHHHHHH
Confidence 12233344421 1111111123348899999999999 9999999999666666677788889
Q ss_pred HHHHHhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 123 VDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 123 l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+++++++ |.|| +++||+++++..+||+++++..+..+
T Consensus 188 l~~~~~~~~~ti----i~~sH~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 188 LKKLQEELGLTL----LFITHDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred HHHHHHHcCCEE----EEEeCCHHHHHHhcCeEEEEeCCEEE
Confidence 9998765 8999 99999999999999999999988754
No 98
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7e-30 Score=213.06 Aligned_cols=157 Identities=13% Similarity=0.046 Sum_probs=116.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcc-----cccCC-------CCccCCccccccH---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFD-------YPVAMDIRELISL--------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----~~~~~-------~~~~~~~~~~~~~--------- 59 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++. .+.++ +.+.+++.+++..
T Consensus 44 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~ 123 (377)
T PRK11607 44 KGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPK 123 (377)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCH
Confidence 49999999999999999999999999999999999997642 12233 3333444444321
Q ss_pred -------HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh-CCC
Q 030541 60 -------EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNF 131 (175)
Q Consensus 60 -------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~ 131 (175)
.++++.+++..........-+..|+||..|+|++.. +|++++||||....+...++.+++.++++.+ .|.
T Consensus 124 ~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~--~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 201 (377)
T PRK11607 124 AEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK--RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGV 201 (377)
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 233444455432222221223348999999999999 9999999999555556666677777877754 589
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|+ +++||+.+++..++|++++|..|..+
T Consensus 202 ti----i~vTHd~~ea~~laDri~vl~~G~i~ 229 (377)
T PRK11607 202 TC----VMVTHDQEEAMTMAGRIAIMNRGKFV 229 (377)
T ss_pred EE----EEEcCCHHHHHHhCCEEEEEeCCEEE
Confidence 99 99999999999999999999887654
No 99
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.3e-30 Score=206.49 Aligned_cols=162 Identities=16% Similarity=0.113 Sum_probs=119.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc--------cCCcccccc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV--------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~--------~~~~~~~~~------- 58 (175)
+||+++|+|+||||||||+|+|+|+.+|++|+|.++|+++.. ..+++.+ ..++.+++.
T Consensus 29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~ 108 (277)
T PRK13652 29 RNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG 108 (277)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcC
Confidence 599999999999999999999999999999999999976432 1122222 112222221
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC
Q 030541 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
..+.++.+++..........-+..++++..++++++. +|+++|||||+...+....+.+.+++++++++
T Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~--~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~ 186 (277)
T PRK13652 109 LDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAM--EPQVLVLDEPTAGLDPQGVKELIDFLNDLPET 186 (277)
T ss_pred CCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 1223344444322211111223348899999999999 99999999996666667777888899998765
Q ss_pred -CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 130 -NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 130 -g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
|.|| +++||+++++.++||+++++..|..+.+++.
T Consensus 187 ~g~tv----li~tH~~~~~~~~~drv~~l~~G~i~~~g~~ 222 (277)
T PRK13652 187 YGMTV----IFSTHQLDLVPEMADYIYVMDKGRIVAYGTV 222 (277)
T ss_pred cCCEE----EEEecCHHHHHHhCCEEEEEECCeEEEECCH
Confidence 8999 9999999999999999999998887765543
No 100
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.96 E-value=5.3e-30 Score=200.18 Aligned_cols=156 Identities=16% Similarity=0.111 Sum_probs=113.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----------ccCCCCc-------cCCcccccc----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPV-------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~-------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~ 114 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPAL 114 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHH
Confidence 599999999999999999999999999999999999875421 1223222 122222221
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..++|+..+++++.. +|++++||||....+....+.+.++++++
T Consensus 115 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~ 192 (228)
T PRK10584 115 LRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG--RPDVLFADEPTGNLDRQTGDKIADLLFSL 192 (228)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 1223444444322111111123348899999999999 99999999997666677778888899998
Q ss_pred HhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 127 KSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 127 ~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+++ |.|| +++||+.+++.. ||+++++..+..+
T Consensus 193 ~~~~~~ti----i~~sH~~~~~~~-~d~i~~l~~g~i~ 225 (228)
T PRK10584 193 NREHGTTL----ILVTHDLQLAAR-CDRRLRLVNGQLQ 225 (228)
T ss_pred HHhcCCEE----EEEecCHHHHHh-CCEEEEEECCEEE
Confidence 654 8899 999999998855 9999999887654
No 101
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.9e-30 Score=202.10 Aligned_cols=159 Identities=16% Similarity=0.151 Sum_probs=114.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCcc-------CCccccccH------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPVA-------MDIRELISL------ 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~~-------~~~~~~~~~------ 59 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.+... ..+++.+. .++.+++..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 109 (237)
T PRK11614 30 QGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAE 109 (237)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccC
Confidence 599999999999999999999999999999999999976421 12333321 122222110
Q ss_pred --------HHHHHHh-CCCCCCchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh
Q 030541 60 --------EDVMEEL-GLGPNGGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS 128 (175)
Q Consensus 60 --------~~~~~~~-~l~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~ 128 (175)
..+++.+ ++... .......+ .++++..+++++.. +|++++||||....+......+.++++++++
T Consensus 110 ~~~~~~~~~~~l~~~~~l~~~--~~~~~~~LS~G~~qrl~la~al~~--~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 185 (237)
T PRK11614 110 RDQFQERIKWVYELFPRLHER--RIQRAGTMSGGEQQMLAIGRALMS--QPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE 185 (237)
T ss_pred hhHHHHHHHHHHHHHHHHHHH--HhCchhhCCHHHHHHHHHHHHHHh--CCCEEEEcCccccCCHHHHHHHHHHHHHHHH
Confidence 0111111 11100 00111222 37889999999999 9999999999666666777788889999877
Q ss_pred CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 129 RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 129 ~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+|.|| +++||+++++.++||+++++..+..+.+++
T Consensus 186 ~~~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 220 (237)
T PRK11614 186 QGMTI----FLVEQNANQALKLADRGYVLENGHVVLEDT 220 (237)
T ss_pred CCCEE----EEEeCcHHHHHhhCCEEEEEeCCEEEeeCC
Confidence 79999 999999999999999999999887665543
No 102
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8.6e-30 Score=199.77 Aligned_cols=157 Identities=12% Similarity=0.060 Sum_probs=115.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----------ccCCCCc-------cCCcccccc----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPV-------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~-------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.++|.+ ..++.+++.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 113 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLL 113 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHH
Confidence 599999999999999999999999999999999999976421 1222222 123333221
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..++|+..+++++.. +|++++||||....+....+.+.++++++
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 191 (233)
T PRK11629 114 IGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVN--NPRLVLADEPTGNLDARNADSIFQLLGEL 191 (233)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 1234444555432211111123348899999999999 99999999997776677778888899998
Q ss_pred Hh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhH
Q 030541 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
++ +|.|| +++||+++++... ++++++..+..+.
T Consensus 192 ~~~~g~tv----ii~sH~~~~~~~~-~~~~~l~~G~i~~ 225 (233)
T PRK11629 192 NRLQGTAF----LVVTHDLQLAKRM-SRQLEMRDGRLTA 225 (233)
T ss_pred HHhCCCEE----EEEeCCHHHHHhh-CEEEEEECCEEEE
Confidence 65 58999 9999999999875 6888888887653
No 103
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.96 E-value=7.6e-30 Score=200.62 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=115.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc------ccCCCC--------ccCCcccccc--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYP--------VAMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~--------~~~~~~~~~~-------- 58 (175)
+||+++|+|+||||||||+++|+|+++|++|+|.++|.+... +.+++. +.+++.+++.
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~ 125 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDL 125 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCC
Confidence 599999999999999999999999999999999998865321 112221 1122222221
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-
Q 030541 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR- 129 (175)
Q Consensus 59 --------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~- 129 (175)
...+++.+++..........-+..++++..++++++. +|++++||||+...+....+.+.++|++++++
T Consensus 126 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 203 (236)
T cd03267 126 PPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLH--EPEILFLDEPTIGLDVVAQENIRNFLKEYNRER 203 (236)
T ss_pred CHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 1123344444322111111123348899999999999 99999999997777777778888899998654
Q ss_pred CCcEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+.|| +++||+++++.+++|+++++..+..+
T Consensus 204 ~~ti----iivsH~~~~~~~~~d~i~~l~~G~i~ 233 (236)
T cd03267 204 GTTV----LLTSHYMKDIEALARRVLVIDKGRLL 233 (236)
T ss_pred CCEE----EEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 7899 99999999999999999999887654
No 104
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.96 E-value=4.6e-30 Score=205.50 Aligned_cols=160 Identities=16% Similarity=0.139 Sum_probs=116.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------ccCCCCc-------cCCccccccH----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELISL---- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~~---- 59 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..+++.+ ..++.+++..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~ 111 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLRE 111 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHH
Confidence 499999999999999999999999999999999999875421 1122222 1232222210
Q ss_pred -------------HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 60 -------------EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 60 -------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
.+.++.+++..........-+..++|+..+++++.. +|++++||||....+......+.++++++
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 189 (269)
T PRK11831 112 HTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIAL--EPDLIMFDEPFVGQDPITMGVLVKLISEL 189 (269)
T ss_pred ccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 112344444322111111122338899999999999 99999999996666677777888899998
Q ss_pred HhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 127 KSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 127 ~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++ |.|| +++||+++++.++|++++++..+..+.++
T Consensus 190 ~~~~g~ti----iivsH~~~~~~~~~d~v~~l~~G~i~~~g 226 (269)
T PRK11831 190 NSALGVTC----VVVSHDVPEVLSIADHAYIVADKKIVAHG 226 (269)
T ss_pred HHhcCcEE----EEEecCHHHHHHhhCEEEEEECCEEEEeC
Confidence 654 8999 99999999999999999999988765443
No 105
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=1.6e-29 Score=196.09 Aligned_cols=153 Identities=13% Similarity=0.067 Sum_probs=113.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----ccCCCCc-------cCCcccccc-----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDYPV-------AMDIRELIS----------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----~~~~~~~-------~~~~~~~~~----------- 58 (175)
+||+++|+|+||||||||+|+|+|+++|++|+|.++|.++.. ..++|.+ ..+..+++.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~ 115 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAK 115 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHH
Confidence 599999999999999999999999999999999999876431 1122222 123332221
Q ss_pred --HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEE
Q 030541 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (175)
Q Consensus 59 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~ 136 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.+++++++++|.|+
T Consensus 116 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti--- 190 (214)
T PRK13543 116 QMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLS--PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAA--- 190 (214)
T ss_pred HHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEE---
Confidence 1234444554432212211223348899999999999 999999999966666777778888999887788999
Q ss_pred eeeehhchhhhhcCCcceeEecc
Q 030541 137 YLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 137 ~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
+++||+++++.++|++++.++.
T Consensus 191 -ii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 191 -LVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred -EEEecChhhhhhhcceEEEEee
Confidence 9999999999999999998864
No 106
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.9e-30 Score=205.47 Aligned_cols=160 Identities=11% Similarity=0.043 Sum_probs=116.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc---------ccCCCCccC--------Ccccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVAM--------DIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------~~~~~~~~~--------~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+.- +..+++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~ 105 (271)
T PRK13638 26 LSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRN 105 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHH
Confidence 599999999999999999999999999999999999976421 123333210 1111110
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
...+++.+++..........-+..++||..++++++. +|++++||||....+......+.+++++++
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 183 (271)
T PRK13638 106 LGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL--QARYLLLDEPTAGLDPAGRTQMIAIIRRIV 183 (271)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 0123333343221111111123348899999999999 999999999966666777778888999987
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++|.|| +++||+++++..+||+++++..+..+.++
T Consensus 184 ~~g~ti----i~vtH~~~~~~~~~d~i~~l~~G~i~~~g 218 (271)
T PRK13638 184 AQGNHV----IISSHDIDLIYEISDAVYVLRQGQILTHG 218 (271)
T ss_pred HCCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 778999 99999999999999999999988766544
No 107
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5e-30 Score=203.68 Aligned_cols=161 Identities=18% Similarity=0.190 Sum_probs=116.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc-------cCCcccccc--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV-------AMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~-------~~~~~~~~~-------- 58 (175)
+||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +.++|.+ .++..+++.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~ 106 (255)
T PRK11231 27 TGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLS 106 (255)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhh
Confidence 599999999999999999999999999999999999875321 1223222 112222111
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
...+++.+++..........-+..+++|..+++++.. +|++++||||....+....+.+.++++++
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~~~l~~l 184 (255)
T PRK11231 107 LWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQ--DTPVVLLDEPTTYLDINHQVELMRLMREL 184 (255)
T ss_pred hccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 1122333333221111111123348899999999999 99999999996666677777888899988
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++|.|| +++||+++++.++|+++++++.+..+..++
T Consensus 185 ~~~~~ti----ii~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 221 (255)
T PRK11231 185 NTQGKTV----VTVLHDLNQASRYCDHLVVLANGHVMAQGT 221 (255)
T ss_pred HHCCCEE----EEEECCHHHHHHhcCEEEEEECCeEEEEcC
Confidence 7778999 999999999999999999999887665443
No 108
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.9e-30 Score=207.60 Aligned_cols=162 Identities=14% Similarity=0.104 Sum_probs=119.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----------ccCCCCccC--------Ccccccc---
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPVAM--------DIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~~~--------~~~~~~~--- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+.. ++.+++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~ 111 (286)
T PRK13646 32 QGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGP 111 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhH
Confidence 599999999999999999999999999999999999976421 123443311 1111111
Q ss_pred -------------HHHHHHHhCCC-CCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHH
Q 030541 59 -------------LEDVMEELGLG-PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 -------------~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..++++.+++. .........-+.+++|+..++++++. +|++++||||....+..+...+.++++
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~--~p~illlDEPt~~LD~~~~~~l~~~l~ 189 (286)
T PRK13646 112 KNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAM--NPDIIVLDEPTAGLDPQSKRQVMRLLK 189 (286)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 12233344443 11111111123348899999999999 999999999966666777778888999
Q ss_pred HHHh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 125 HLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 125 ~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
++++ +|.|| +++||+++++.++||+++++..|..+.+++.
T Consensus 190 ~l~~~~g~tv----l~vtH~~~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 190 SLQTDENKTI----ILVSHDMNEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHhCCCEE----EEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9865 58999 9999999999999999999998887755543
No 109
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.5e-30 Score=207.67 Aligned_cols=161 Identities=17% Similarity=0.079 Sum_probs=119.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----------ccCCCCcc--------CCcccccc---
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPVA--------MDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~~--------~~~~~~~~--- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. +.+++.+. .++.+++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~ 111 (290)
T PRK13634 32 SGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGP 111 (290)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHH
Confidence 599999999999999999999999999999999999976521 12333331 12222221
Q ss_pred -------------HHHHHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHH
Q 030541 59 -------------LEDVMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 -------------~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..++++.+++... .......-+..++|+..|+++++. +|+++|||||+...+......+.++++
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~--~P~llllDEPt~~LD~~~~~~l~~~L~ 189 (290)
T PRK13634 112 MNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAM--EPEVLVLDEPTAGLDPKGRKEMMEMFY 189 (290)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 1233445555321 111111223348899999999999 999999999966666667778888999
Q ss_pred HHHhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 125 HLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 125 ~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++++ |.|| +++||+++++..+||+++++..|..+.+++
T Consensus 190 ~l~~~~g~tv----iiitHd~~~~~~~~drv~~l~~G~i~~~g~ 229 (290)
T PRK13634 190 KLHKEKGLTT----VLVTHSMEDAARYADQIVVMHKGTVFLQGT 229 (290)
T ss_pred HHHHhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 98654 8999 999999999999999999999887765543
No 110
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.96 E-value=7.6e-30 Score=203.10 Aligned_cols=160 Identities=17% Similarity=0.162 Sum_probs=116.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc-------cCCcccccc--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV-------AMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~-------~~~~~~~~~-------- 58 (175)
+|++++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 106 (258)
T PRK13548 27 PGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGL 106 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCC
Confidence 599999999999999999999999999999999999875321 1122222 223322221
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhh------ccCCCCEEEEeCCCcccccccchhHHHHHH
Q 030541 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELD------NYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 --------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~------~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..++++.+++..........-+..++||..++++++ . +|++++||||....+......+.++++
T Consensus 107 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~--~p~lllLDEPt~~LD~~~~~~l~~~l~ 184 (258)
T PRK13548 107 SRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDG--PPRWLLLDEPTSALDLAHQHHVLRLAR 184 (258)
T ss_pred CcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCC--CCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 122333344432111111112334889999999998 6 899999999966666667778888999
Q ss_pred HHH-hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 125 HLK-SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 125 ~l~-~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++ ++|.|| +++||+++++.++||+++++..|..+..+
T Consensus 185 ~~~~~~~~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 223 (258)
T PRK13548 185 QLAHERGLAV----IVVLHDLNLAARYADRIVLLHQGRLVADG 223 (258)
T ss_pred HHHHhcCCEE----EEEECCHHHHHHhcCEEEEEECCEEEeeC
Confidence 987 678999 99999999999999999999887765443
No 111
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=7.6e-30 Score=197.65 Aligned_cols=156 Identities=16% Similarity=0.096 Sum_probs=114.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----------ccCCCCc-------cCCcccccc------
Q 030541 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPV-------AMDIRELIS------ 58 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~-------~~~~~~~~~------ 58 (175)
|+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 103 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK 103 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC
Confidence 8999999999999999999999999999999999865421 1122222 223332221
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-
Q 030541 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR- 129 (175)
Q Consensus 59 --------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~- 129 (175)
..++++.+++..........-+..++|+..++++++. +|++++||||+...+....+.+.+++++++++
T Consensus 104 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 181 (214)
T cd03297 104 RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAA--QPELLLLDEPFSALDRALRLQLLPELKQIKKNL 181 (214)
T ss_pred CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 1223444444321111111123348899999999999 99999999997776677777888899998765
Q ss_pred CCcEEEEeeeehhchhhhhcCCcceeEeccchhhH
Q 030541 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
|.|| +++||+++++.++|++++++..+..+.
T Consensus 182 ~~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 182 NIPV----IFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred CcEE----EEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 8899 999999999999999999999887543
No 112
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=8.5e-30 Score=196.88 Aligned_cols=155 Identities=20% Similarity=0.205 Sum_probs=113.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc------ccCCCCc-------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYPV-------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~~-------~~~~~~~~~--------- 58 (175)
+| +++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 103 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP 103 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCC
Confidence 47 999999999999999999999999999999999976421 1222222 123333221
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCC
Q 030541 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
..++++.+++..........-+..+++|..+++++.. +|++++||||....+....+.+.++++++++ +.
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ 180 (211)
T cd03264 104 SKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVG--DPSILIVDEPTAGLDPEERIRFRNLLSELGE-DR 180 (211)
T ss_pred HHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CC
Confidence 1123333444321111111122338899999999999 9999999999777677777788889999876 58
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|| +++||+++++.+++|+++++..+..+
T Consensus 181 ti----i~vsH~~~~~~~~~d~i~~l~~g~i~ 208 (211)
T cd03264 181 IV----ILSTHIVEDVESLCNQVAVLNKGKLV 208 (211)
T ss_pred EE----EEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 89 99999999999999999999987654
No 113
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.96 E-value=7.8e-30 Score=202.65 Aligned_cols=161 Identities=15% Similarity=0.123 Sum_probs=116.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc-------cCCcccccc--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV-------AMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~-------~~~~~~~~~-------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.++|.+ ..++.+++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 105 (256)
T TIGR03873 26 PGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRS 105 (256)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhh
Confidence 599999999999999999999999999999999999875421 1122222 112222211
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.++++++
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~ 183 (256)
T TIGR03873 106 LWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQ--EPKLLLLDEPTNHLDVRAQLETLALVREL 183 (256)
T ss_pred hccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 1112233333211111111122348889999999999 99999999997766677788888899998
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++|.|| +++||+++++.++||+++++..+..+.+++
T Consensus 184 ~~~~~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 220 (256)
T TIGR03873 184 AATGVTV----VAALHDLNLAASYCDHVVVLDGGRVVAAGP 220 (256)
T ss_pred HhcCCEE----EEEeCCHHHHHHhCCEEEEEeCCCEEEecC
Confidence 7778999 999999999999999999999887765443
No 114
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.96 E-value=9.9e-30 Score=219.72 Aligned_cols=163 Identities=16% Similarity=0.106 Sum_probs=123.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCc-------cCCcccccc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~------- 58 (175)
+|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++|.+ .+++.+++.
T Consensus 36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 115 (510)
T PRK15439 36 AGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQ 115 (510)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccch
Confidence 599999999999999999999999999999999999865421 1122222 223333321
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcE
Q 030541 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNV 133 (175)
Q Consensus 59 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tv 133 (175)
..++++.+++..........-+..++||..++++++. +|++++||||+...+......+.++|++++++|.||
T Consensus 116 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~ti 193 (510)
T PRK15439 116 ASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMR--DSRILILDEPTASLTPAETERLFSRIRELLAQGVGI 193 (510)
T ss_pred HHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 1234555565433222222223348999999999999 999999999977777777788888999998789999
Q ss_pred EEEeeeehhchhhhhcCCcceeEeccchhhHHhhhh
Q 030541 134 CAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYS 169 (175)
Q Consensus 134 li~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (175)
+++||+++++.++||+++++..+..+..+++.
T Consensus 194 ----iivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (510)
T PRK15439 194 ----VFISHKLPEIRQLADRISVMRDGTIALSGKTA 225 (510)
T ss_pred ----EEEeCCHHHHHHhCCEEEEEECCEEEEecChH
Confidence 99999999999999999999988876554443
No 115
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=7e-30 Score=214.14 Aligned_cols=159 Identities=18% Similarity=0.083 Sum_probs=118.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----------ccCCCCc-------cCCcccccc----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPV-------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~-------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++|.+ .+++.+++.
T Consensus 53 ~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~ 132 (400)
T PRK10070 53 EGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGME 132 (400)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 599999999999999999999999999999999999876421 1233322 233333332
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..|+||..++++++. +|+++|||||....+...+..+.++++++
T Consensus 133 ~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~--~P~iLLLDEPts~LD~~~r~~l~~~L~~l 210 (400)
T PRK10070 133 LAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAI--NPDILLMDEAFSALDPLIRTEMQDELVKL 210 (400)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHHHHHHHH
Confidence 1234555555433222221223348999999999999 99999999996665666677788888888
Q ss_pred Hh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
++ .|+|| +++||+++++.+++|++++|..|..+.+
T Consensus 211 ~~~~g~TI----IivTHd~~~~~~~~Dri~vL~~G~i~~~ 246 (400)
T PRK10070 211 QAKHQRTI----VFISHDLDEAMRIGDRIAIMQNGEVVQV 246 (400)
T ss_pred HHHCCCeE----EEEECCHHHHHHhCCEEEEEECCEEEec
Confidence 64 58999 9999999999999999999998876543
No 116
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4e-30 Score=198.23 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=118.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------ccCCCCc-------cCCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++||||||||||||+|+|+|+.+|++|+|.++|.++.. .++++.+ .+++.+++.
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~ 108 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG 108 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcc
Confidence 499999999999999999999999999999999999976532 2334333 122221111
Q ss_pred -------------------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccch
Q 030541 59 -------------------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVP 117 (175)
Q Consensus 59 -------------------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~ 117 (175)
..+.++.+++...... +.+.+| |+||+.+||++.+ +|++++.|||....+.....
T Consensus 109 ~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q--ra~~LSGGQQQRVaIARaL~Q--~pkiILADEPvasLDp~~a~ 184 (258)
T COG3638 109 YTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ--RASTLSGGQQQRVAIARALVQ--QPKIILADEPVASLDPESAK 184 (258)
T ss_pred cchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH--HhccCCcchhHHHHHHHHHhc--CCCEEecCCcccccChhhHH
Confidence 2344455554433222 223344 8899999999999 99999999994444444566
Q ss_pred hHHHHHHHHH-hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 118 VLRNFVDHLK-SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 118 ~~~~~l~~l~-~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.+++.|++++ ++|.|| ++..|+++.+.+||+|++-+..|..++-+
T Consensus 185 ~Vm~~l~~in~~~g~Tv----i~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 185 KVMDILKDINQEDGITV----IVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred HHHHHHHHHHHHcCCEE----EEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 6777899885 569999 99999999999999999999999887643
No 117
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.96 E-value=7.8e-30 Score=202.76 Aligned_cols=161 Identities=14% Similarity=0.126 Sum_probs=120.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------------------ccCCCCc-------cCCc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------------ENFDYPV-------AMDI 53 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------------------~~~~~~~-------~~~~ 53 (175)
+||+++|+|+||||||||+++|+|+++|++|+|.++|.+... +.++|.+ ..++
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv 109 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 109 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcH
Confidence 599999999999999999999999999999999999865421 1222221 1233
Q ss_pred ccccc-----------------HHHHHHHhCCCCCC-chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCccccccc
Q 030541 54 RELIS-----------------LEDVMEELGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTH 115 (175)
Q Consensus 54 ~~~~~-----------------~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~ 115 (175)
.+++. ..++++.+++.... ......-+..++++..+++++.. +|++++||||....+...
T Consensus 110 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~ 187 (257)
T PRK10619 110 LENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAM--EPEVLLFDEPTSALDPEL 187 (257)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHH
Confidence 33321 12344555554321 11111223348899999999999 999999999977766777
Q ss_pred chhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 116 VPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 116 ~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
...+.+++++++++|.|| +++||+.+++.++||+++++..+..+..++
T Consensus 188 ~~~l~~~l~~l~~~g~ti----iivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (257)
T PRK10619 188 VGEVLRIMQQLAEEGKTM----VVVTHEMGFARHVSSHVIFLHQGKIEEEGA 235 (257)
T ss_pred HHHHHHHHHHHHhcCCEE----EEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 778888999987779999 999999999999999999999887765433
No 118
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=8.6e-30 Score=190.00 Aligned_cols=137 Identities=14% Similarity=0.118 Sum_probs=108.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++...... + .....+++-.. -+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~--------~-----~~~~~i~~~~q-------LS 84 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPR--------D-----ARRAGIAMVYQ-------LS 84 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHH--------H-----HHhcCeEEEEe-------cC
Confidence 5999999999999999999999999999999999998764321100 0 00000010000 23
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccc
Q 030541 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
..++++..+++++.. +|++++||||....+......+.++++++++++.|+ +++||+.+++.+++++++.+..+
T Consensus 85 ~G~~qrl~laral~~--~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~ti----ii~sh~~~~~~~~~d~~~~l~~g 158 (163)
T cd03216 85 VGERQMVEIARALAR--NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAV----IFISHRLDEVFEIADRVTVLRDG 158 (163)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEE----EEEeCCHHHHHHhCCEEEEEECC
Confidence 458899999999999 999999999966666777778888999987778999 99999999999999999999887
Q ss_pred hhh
Q 030541 161 HTV 163 (175)
Q Consensus 161 ~~~ 163 (175)
..+
T Consensus 159 ~i~ 161 (163)
T cd03216 159 RVV 161 (163)
T ss_pred EEE
Confidence 643
No 119
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=6.5e-30 Score=206.03 Aligned_cols=162 Identities=12% Similarity=0.076 Sum_probs=118.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc---------ccCCCCcc--------CCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVA--------MDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------~~~~~~~~--------~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..++|.+. .++.+++.
T Consensus 31 ~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 110 (283)
T PRK13636 31 KGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVN 110 (283)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHH
Confidence 599999999999999999999999999999999999976520 12233321 12222211
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
...+++.+++..........-+..++|+..+++++.. +|++++||||....+......+.+++++++
T Consensus 111 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~--~p~lLilDEPt~gLD~~~~~~l~~~l~~l~ 188 (283)
T PRK13636 111 LKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM--EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQ 188 (283)
T ss_pred cCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 1122333444322111111123348899999999999 999999999966666777778888999987
Q ss_pred hC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 128 SR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 128 ~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
++ |.|| +++||+++++..+||+++++..|..+.+++.
T Consensus 189 ~~~g~ti----llvsH~~~~~~~~~dri~~l~~G~i~~~g~~ 226 (283)
T PRK13636 189 KELGLTI----IIATHDIDIVPLYCDNVFVMKEGRVILQGNP 226 (283)
T ss_pred HhCCCEE----EEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 64 8999 9999999999999999999998887765543
No 120
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=6.8e-30 Score=201.41 Aligned_cols=160 Identities=17% Similarity=0.168 Sum_probs=116.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCcc------CCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA------MDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~------~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..+++.+. .++.+++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~ 107 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEK 107 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhhcCcH
Confidence 599999999999999999999999999999999999876421 12222221 12221111
Q ss_pred ---HHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh-CCCcE
Q 030541 59 ---LEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNV 133 (175)
Q Consensus 59 ---~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tv 133 (175)
..++++.+++.. ........-+..++|+..+++++.. +|+++|||||....+....+.+.+.++++++ +|.||
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~ti 185 (241)
T PRK14250 108 NVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLAN--NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTV 185 (241)
T ss_pred HHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 123344444431 1111111123348899999999999 9999999999666666677788888998876 48999
Q ss_pred EEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 134 CAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 134 li~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++||+++++.++||++++++.+..+.+.
T Consensus 186 ----i~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 214 (241)
T PRK14250 186 ----IWITHNMEQAKRIGDYTAFLNKGILVEYA 214 (241)
T ss_pred ----EEEeccHHHHHHhCCEEEEEeCCEEEEeC
Confidence 99999999999999999999988776543
No 121
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8.5e-30 Score=203.51 Aligned_cols=159 Identities=21% Similarity=0.238 Sum_probs=114.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc-------cCCcccccc--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV-------AMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~-------~~~~~~~~~-------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ .+++.+++.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 115 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHG 115 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccc
Confidence 599999999999999999999999999999999999875421 1122222 112221111
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..+++|..+++++.. +|+++|||||....+......+.++++++
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~~~~~l~~l 193 (265)
T PRK10575 116 ALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQ--DSRCLLLDEPTSALDIAHQVDVLALVHRL 193 (265)
T ss_pred cccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 1123333333221111111123348899999999999 99999999996666666777788899998
Q ss_pred HhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 127 KSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 127 ~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+++ |.|| +++||+++++.++||+++++..+..+.+
T Consensus 194 ~~~~~~ti----ii~sH~~~~i~~~~d~i~~l~~G~i~~~ 229 (265)
T PRK10575 194 SQERGLTV----IAVLHDINMAARYCDYLVALRGGEMIAQ 229 (265)
T ss_pred HHhcCCEE----EEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 654 8999 9999999999999999999988876543
No 122
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1e-29 Score=204.45 Aligned_cols=158 Identities=13% Similarity=0.052 Sum_probs=116.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----------ccCCCCcc--------CCcccccc---
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPVA--------MDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~~--------~~~~~~~~--- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++|.+. .++.+++.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~ 111 (280)
T PRK13649 32 DGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGP 111 (280)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHH
Confidence 599999999999999999999999999999999999875421 12233221 12222221
Q ss_pred -------------HHHHHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHH
Q 030541 59 -------------LEDVMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 -------------~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..++++.+++... .......-+..++||..++++++. +|+++|||||....+....+.+.++|+
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~~~l~ 189 (280)
T PRK13649 112 QNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAM--EPKILVLDEPTAGLDPKGRKELMTLFK 189 (280)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1122334444321 111111123348999999999999 999999999966666777778888999
Q ss_pred HHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhH
Q 030541 125 HLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 125 ~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
+++++|.|| +++||+++++.++||+++++..+..+.
T Consensus 190 ~~~~~~~ti----iivsH~~~~~~~~~d~i~~l~~G~i~~ 225 (280)
T PRK13649 190 KLHQSGMTI----VLVTHLMDDVANYADFVYVLEKGKLVL 225 (280)
T ss_pred HHHHCCCEE----EEEeccHHHHHHhCCEEEEEECCEEEE
Confidence 987778999 999999999999999999998877653
No 123
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.96 E-value=1.6e-29 Score=210.83 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=117.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeec----Ccc-----------cccCC-------CCccCCcccccc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL----DPA-----------AENFD-------YPVAMDIRELIS 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~----~~~-----------~~~~~-------~~~~~~~~~~~~ 58 (175)
+||+++|+|+||||||||+|+|+|+++|++|+|.++|. ++. ...++ +.+..++.+++.
T Consensus 49 ~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~ 128 (382)
T TIGR03415 49 EGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVA 128 (382)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHH
Confidence 59999999999999999999999999999999999985 221 01222 223334444332
Q ss_pred ----------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHH
Q 030541 59 ----------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 ----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..++++.+++..........-+..++||..++++++. +|++++||||....+...+..+.+.
T Consensus 129 ~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~--~P~ILLlDEPts~LD~~~r~~l~~~ 206 (382)
T TIGR03415 129 FGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAM--DADILLMDEPFSALDPLIRTQLQDE 206 (382)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHHHH
Confidence 1234555565433222222223348999999999999 9999999999555555566677788
Q ss_pred HHHHHhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 123 VDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 123 l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+.+++++ +.|+ +++||+++++.+++|++++|+.|..+-+
T Consensus 207 L~~l~~~~~~TI----I~iTHdl~e~~~l~DrI~vl~~G~iv~~ 246 (382)
T TIGR03415 207 LLELQAKLNKTI----IFVSHDLDEALKIGNRIAIMEGGRIIQH 246 (382)
T ss_pred HHHHHHhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 8888654 8999 9999999999999999999998876543
No 124
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.96 E-value=4.8e-30 Score=196.34 Aligned_cols=151 Identities=16% Similarity=0.069 Sum_probs=116.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccC--ccccceEEEeecCccc----ccCCCCccCCccccccHHHHHHHhCCCCCCch
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA----ENFDYPVAMDIRELISLEDVMEELGLGPNGGL 74 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~--~~~~G~I~i~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 74 (175)
+||+++|+||||||||||+++|+|+. +|++|+|.++|.++.. ..+++.+ +....+...++.+++.+....
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~--q~~~~~~~~t~~~~i~~~~~~-- 109 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVP--QDDILHPTLTVRETLMFAAKL-- 109 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEcc--CcccCCCCCcHHHHHHHHHHh--
Confidence 49999999999999999999999999 9999999999987532 2233433 222233333455544321110
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchh-hhhcCCcc
Q 030541 75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCI-RFRTLPPC 153 (175)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~-~~~~~~~~ 153 (175)
..-+..++++..++++++. +|++++||||....+....+.+.+++++++++|.|+ +++||+++ ++.+++|+
T Consensus 110 --~~LS~G~~qrv~laral~~--~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~ti----ii~sh~~~~~~~~~~d~ 181 (194)
T cd03213 110 --RGLSGGERKRVSIALELVS--NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTI----ICSIHQPSSEIFELFDK 181 (194)
T ss_pred --ccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEE----EEEecCchHHHHHhcCE
Confidence 0123348899999999999 999999999966666777778888999987779999 99999996 78899999
Q ss_pred eeEeccchhh
Q 030541 154 IVCFCCTHTV 163 (175)
Q Consensus 154 ~~~~~~~~~~ 163 (175)
++++..+..+
T Consensus 182 v~~l~~G~i~ 191 (194)
T cd03213 182 LLLLSQGRVI 191 (194)
T ss_pred EEEEeCCEEE
Confidence 9999988754
No 125
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.4e-29 Score=203.38 Aligned_cols=161 Identities=11% Similarity=0.075 Sum_probs=118.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc---------ccCCCCcc--------CCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVA--------MDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------~~~~~~~~--------~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++|.+. .++.+++.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~ 106 (275)
T PRK13639 27 KGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLN 106 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHH
Confidence 599999999999999999999999999999999999976421 11222221 12222221
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..++++..++++++. +|++++||||....+......+.+++++++
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~~~l~~l~ 184 (275)
T PRK13639 107 LGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAM--KPEIIVLDEPTSGLDPMGASQIMKLLYDLN 184 (275)
T ss_pred cCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 1223444444322211111223348899999999999 999999999976666777778888999987
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++|.|| +++||+++++.++||+++++..+..+.+++
T Consensus 185 ~~~~ti----l~vtH~~~~~~~~~d~i~~l~~G~i~~~g~ 220 (275)
T PRK13639 185 KEGITI----IISTHDVDLVPVYADKVYVMSDGKIIKEGT 220 (275)
T ss_pred HCCCEE----EEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 778999 999999999999999999998887665543
No 126
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.96 E-value=2.9e-29 Score=195.78 Aligned_cols=159 Identities=14% Similarity=0.175 Sum_probs=116.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--ccCCCCc---------cCCccccc------------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPV---------AMDIRELI------------ 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--~~~~~~~---------~~~~~~~~------------ 57 (175)
+||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.. +.++|.+ ..++.+++
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~ 84 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLR 84 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccccccc
Confidence 599999999999999999999999999999999999976421 1122222 11221110
Q ss_pred --------cHHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC
Q 030541 58 --------SLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 58 --------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
....+++.+++..........-+..+++|..+++++.. +|+++++|||....+......+.+++++++++
T Consensus 85 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~ 162 (223)
T TIGR03771 85 RPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALAT--RPSVLLLDEPFTGLDMPTQELLTELFIELAGA 162 (223)
T ss_pred CCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc
Confidence 01234455555432222222223348899999999999 99999999996666666777888899998777
Q ss_pred CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
|.|+ +++||+++++.++||+++++ .+..+...
T Consensus 163 ~~tv----ii~sH~~~~~~~~~d~i~~l-~G~i~~~~ 194 (223)
T TIGR03771 163 GTAI----LMTTHDLAQAMATCDRVVLL-NGRVIADG 194 (223)
T ss_pred CCEE----EEEeCCHHHHHHhCCEEEEE-CCEEEeec
Confidence 9999 99999999999999999999 56555443
No 127
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.6e-29 Score=198.15 Aligned_cols=161 Identities=12% Similarity=0.061 Sum_probs=120.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----ccCCCCc-------cCCcccccc----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYPV-------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~~-------~~~~~~~~~---------- 58 (175)
+|++++|+|+||||||||+++|+|+++|++|+|.++|.+... ..+++.+ .++..+++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~ 104 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK 104 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCCH
Confidence 499999999999999999999999999999999999875421 1222221 223322221
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-CC
Q 030541 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
...+++.+++..........-+..++++..++++++. +|++++||||....+....+.+.+++++++++ |.
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~--~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~ 182 (232)
T cd03300 105 AEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVN--EPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGI 182 (232)
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC
Confidence 1234444555433222222223348899999999999 99999999997776677778888899998764 89
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|| +++||+.+++.+.||+++++..+..+.+++
T Consensus 183 ti----ii~sh~~~~~~~~~d~i~~l~~G~~~~~~~ 214 (232)
T cd03300 183 TF----VFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214 (232)
T ss_pred EE----EEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99 999999999999999999999887765544
No 128
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=9.3e-30 Score=204.77 Aligned_cols=158 Identities=11% Similarity=0.033 Sum_probs=115.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCcc--------CCcccccc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA--------MDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~--------~~~~~~~~------- 58 (175)
+||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +.+++.+. .++.+++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~ 111 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG 111 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCC
Confidence 599999999999999999999999999999999999976532 12333321 12222211
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC
Q 030541 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
..++++.+++..........-+..++|+..++++++. +|++++||||+...+......+.+++++++++
T Consensus 112 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~--~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~ 189 (279)
T PRK13650 112 IPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAM--RPKIIILDEATSMLDPEGRLELIKTIKGIRDD 189 (279)
T ss_pred CCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 1223333444322111111123348899999999999 99999999996666666777888899998764
Q ss_pred -CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 130 -NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 130 -g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
|.|| +++||+++++ .+||+++++..|..+..
T Consensus 190 ~g~ti----livtH~~~~~-~~~dri~~l~~G~i~~~ 221 (279)
T PRK13650 190 YQMTV----ISITHDLDEV-ALSDRVLVMKNGQVEST 221 (279)
T ss_pred cCCEE----EEEecCHHHH-HhCCEEEEEECCEEEEE
Confidence 8999 9999999999 58999999988876644
No 129
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.2e-29 Score=202.64 Aligned_cols=160 Identities=16% Similarity=0.195 Sum_probs=115.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc-------cCCcccccc--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV-------AMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~-------~~~~~~~~~-------- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++|.+ ..++.+++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~ 111 (265)
T PRK10253 32 DGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQP 111 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccc
Confidence 599999999999999999999999999999999999876421 1222222 112211110
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..+++|..+++++.. +|++++||||....+....+.+.++|.++
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~~~L~~l 189 (265)
T PRK10253 112 LFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ--ETAIMLLDEPTTWLDISHQIDLLELLSEL 189 (265)
T ss_pred cccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 1223333444321111111122348899999999999 99999999996666666777888899998
Q ss_pred Hh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++ +|.|| +++||+++++.++||+++++..+..+.++
T Consensus 190 ~~~~~~ti----ii~tH~~~~~~~~~d~i~~l~~G~i~~~g 226 (265)
T PRK10253 190 NREKGYTL----AAVLHDLNQACRYASHLIALREGKIVAQG 226 (265)
T ss_pred HHhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 76 48899 99999999999999999999988765443
No 130
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.96 E-value=2.4e-29 Score=198.05 Aligned_cols=162 Identities=14% Similarity=0.115 Sum_probs=117.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccC--ccccceEEEeecCccc--------ccCCCCc-------cCCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~--~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+. +|++|+|.++|.++.. ..+++.+ ..+..+++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~ 104 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNA 104 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHH
Confidence 59999999999999999999999995 7999999999976421 1122222 111111110
Q ss_pred ------------------HHHHHHHhCCCCC-Cchhhh-HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchh
Q 030541 59 ------------------LEDVMEELGLGPN-GGLIYC-MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 59 ------------------~~~~~~~~~l~~~-~~~~~~-~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
..++++.+++... ...... .-+..++|+..+++++.. +|++++||||+...+....+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~ 182 (243)
T TIGR01978 105 RRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALL--EPKLAILDEIDSGLDIDALKI 182 (243)
T ss_pred hhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHH
Confidence 1223334444321 111111 123348999999999999 999999999977766777788
Q ss_pred HHHHHHHHHhCCCcEEEEeeeehhchhhhhcC-CcceeEeccchhhHHhhh
Q 030541 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTL-PPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~-~~~~~~~~~~~~~~~~~~ 168 (175)
+.++|++++++|.|| +++||+++++..+ ||+++++..+..+.+++.
T Consensus 183 l~~~l~~~~~~~~tv----i~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (243)
T TIGR01978 183 VAEGINRLREPDRSF----LIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV 229 (243)
T ss_pred HHHHHHHHHHCCcEE----EEEEecHHHHHhhcCCeEEEEeCCEEEEecCH
Confidence 888999997778999 9999999999998 899999998877655443
No 131
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.4e-29 Score=217.24 Aligned_cols=161 Identities=16% Similarity=0.121 Sum_probs=120.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCc-------cCCcccccc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+ .+++.+++.
T Consensus 30 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (510)
T PRK09700 30 PGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTK 109 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccccc
Confidence 599999999999999999999999999999999999865421 1233322 112222110
Q ss_pred ----------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHH
Q 030541 59 ----------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 ----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..++++.+++..........-+..++||..++++++. +|++++||||+...+......+.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~--~p~lllLDEPt~~LD~~~~~~l~~~ 187 (510)
T PRK09700 110 KVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLML--DAKVIIMDEPTSSLTNKEVDYLFLI 187 (510)
T ss_pred ccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 1223444555432222222223348999999999999 9999999999777777778888889
Q ss_pred HHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 123 VDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|++++++|.|| +++||+++++.++||++++++.+..+..++
T Consensus 188 l~~l~~~g~ti----iivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 228 (510)
T PRK09700 188 MNQLRKEGTAI----VYISHKLAEIRRICDRYTVMKDGSSVCSGM 228 (510)
T ss_pred HHHHHhCCCEE----EEEeCCHHHHHHhCCEEEEEECCEEeeecc
Confidence 99998779999 999999999999999999999887765544
No 132
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.96 E-value=1.9e-29 Score=199.97 Aligned_cols=161 Identities=17% Similarity=0.132 Sum_probs=116.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------------------ccCCCCc-------cCCc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------------ENFDYPV-------AMDI 53 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------------------~~~~~~~-------~~~~ 53 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.+++.+ ..++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 104 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTV 104 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcH
Confidence 599999999999999999999999999999999999875421 1122222 1222
Q ss_pred ccccc-----------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccc
Q 030541 54 RELIS-----------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHV 116 (175)
Q Consensus 54 ~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~ 116 (175)
.+++. ..++++.+++..........-+..++++..+++++.. +|++++||||....+....
T Consensus 105 ~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~ 182 (252)
T TIGR03005 105 LDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAM--RPKVMLFDEVTSALDPELV 182 (252)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHH
Confidence 22221 1223333444321111111122348899999999999 9999999999666666667
Q ss_pred hhHHHHHHHHHhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 117 PVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 117 ~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
..+.+++++++++ |.|+ +++||+++++.+++|+++++..|..+.++.
T Consensus 183 ~~l~~~l~~~~~~~~~ti----iivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 183 GEVLNVIRRLASEHDLTM----LLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHhcCcEE----EEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 7788889988664 8999 999999999999999999999988765543
No 133
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=2.3e-29 Score=190.04 Aligned_cols=129 Identities=16% Similarity=0.078 Sum_probs=107.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.+ +++.+ +... -+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----i~~~~--q~~~-----------------------LS 73 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----PVYKP--QYID-----------------------LS 73 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----EEEEc--ccCC-----------------------CC
Confidence 599999999999999999999999999999999998853 22222 1000 23
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCC-CcEEEEeeeehhchhhhhcCCcceeEecc
Q 030541 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRN-FNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g-~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
..++++..++++++. +|++++||||....+....+.+.+.++++++++ .|| +++||+++++..++++++++..
T Consensus 74 gGq~qrv~laral~~--~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~ti----iivsH~~~~~~~~~d~i~~l~~ 147 (177)
T cd03222 74 GGELQRVAIAAALLR--NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTA----LVVEHDLAVLDYLSDRIHVFEG 147 (177)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEE----EEEECCHHHHHHhCCEEEEEcC
Confidence 458899999999999 999999999966666666777788888887664 899 9999999999999999999998
Q ss_pred chhhHH
Q 030541 160 THTVVQ 165 (175)
Q Consensus 160 ~~~~~~ 165 (175)
+..+++
T Consensus 148 ~~~~~~ 153 (177)
T cd03222 148 EPGVYG 153 (177)
T ss_pred CCccce
Confidence 887755
No 134
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.96 E-value=1.2e-29 Score=197.99 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=116.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccC-----ccccceEEEeecCccc---------ccCCCCc------cCCcccccc--
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHC-----ETVRRTMHIVNLDPAA---------ENFDYPV------AMDIRELIS-- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~-----~~~~G~I~i~g~~~~~---------~~~~~~~------~~~~~~~~~-- 58 (175)
+||+++|+||||||||||+|+|+|+. +|++|+|.++|.++.. +.++|.+ ..++.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~ 104 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYG 104 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHHHHHHhH
Confidence 59999999999999999999999999 9999999999876421 1122222 123322221
Q ss_pred ---------------HHHHHHHhCCCCCCchh--hhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHH
Q 030541 59 ---------------LEDVMEELGLGPNGGLI--YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN 121 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~ 121 (175)
..++++.+++....... ...-+..++|+..++++++. +|++++||||+...+......+.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~~ 182 (227)
T cd03260 105 LRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN--EPEVLLLDEPTSALDPISTAKIEE 182 (227)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHHH
Confidence 11233444443221111 01123348899999999999 999999999977766777778888
Q ss_pred HHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 122 FVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 122 ~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+|++++++ .|| +++||+++++.++||+++++..|..+.++
T Consensus 183 ~l~~~~~~-~ti----i~~sH~~~~~~~~~d~i~~l~~G~i~~~g 222 (227)
T cd03260 183 LIAELKKE-YTI----VIVTHNMQQAARVADRTAFLLNGRLVEFG 222 (227)
T ss_pred HHHHHhhC-cEE----EEEeccHHHHHHhCCEEEEEeCCEEEEec
Confidence 99998776 889 99999999999999999999998766443
No 135
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=3.5e-29 Score=192.76 Aligned_cols=151 Identities=13% Similarity=0.036 Sum_probs=110.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc------ccCC-------CCccCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFD-------YPVAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~-------~~~~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. +.++ +.+..++.+++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~ 105 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPG 105 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCcc
Confidence 599999999999999999999999999999999999876421 1111 222223333321
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEE
Q 030541 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVC 134 (175)
Q Consensus 59 ----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvl 134 (175)
..++++.+++..........-+..++++..++++++. +|++++||||....+......+.++++++++++.||
T Consensus 106 ~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti- 182 (204)
T PRK13538 106 DDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLT--RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMV- 182 (204)
T ss_pred HHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEE-
Confidence 1234455555322111111123348899999999999 999999999977766777778888999987778899
Q ss_pred EEeeeehhchhhhhcCCcceeEe
Q 030541 135 AVYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 135 i~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
+++||+.+++..+..+.+.+
T Consensus 183 ---ii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 183 ---ILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred ---EEEecChhhhccCCceEEec
Confidence 99999999998877777655
No 136
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.96 E-value=3.5e-29 Score=192.57 Aligned_cols=150 Identities=14% Similarity=0.091 Sum_probs=109.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcc-----------cccCCCCc-------cCCcccccc----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDYPV-------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----------~~~~~~~~-------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+.+++.+ ..++.+++.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~ 102 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLK 102 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHH
Confidence 59999999999999999999999999999999999987631 11222222 223333221
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.++++++
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~ 180 (206)
T TIGR03608 103 YKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILK--DPPLILADEPTGSLDPKNRDEVLDLLLEL 180 (206)
T ss_pred hcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcCCCCHHHHHHHHHHHHHH
Confidence 1234444555332212221223348899999999999 99999999996666667777888899998
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEe
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
+++|.|+ +++||+++.+ +.|++++++
T Consensus 181 ~~~~~ti----i~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 181 NDEGKTI----IIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred HhcCCEE----EEEeCCHHHH-hhcCEEEeC
Confidence 7778999 9999999865 578987754
No 137
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.96 E-value=1.7e-29 Score=202.06 Aligned_cols=159 Identities=17% Similarity=0.158 Sum_probs=116.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCcc---------CCcccccc------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA---------MDIRELIS------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~---------~~~~~~~~------ 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.+. .++.+++.
T Consensus 38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 117 (267)
T PRK15112 38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLN 117 (267)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhc
Confidence 499999999999999999999999999999999999876431 11222221 11111110
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHH
Q 030541 59 -----------LEDVMEELGLGPNGGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
..++++.+++.... .......+ .++|+..+++++.. +|+++|||||....+......+.++|++
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~ 194 (267)
T PRK15112 118 TDLEPEQREKQIIETLRQVGLLPDH-ASYYPHMLAPGQKQRLGLARALIL--RPKVIIADEALASLDMSMRSQLINLMLE 194 (267)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChHH-HhcCchhcCHHHHHHHHHHHHHHh--CCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 12344555553111 11111233 48999999999999 9999999999666666777788889999
Q ss_pred HHhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 126 LKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 126 l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++++ |.|| +++||+++++..+||+++++..+..+...
T Consensus 195 ~~~~~g~tv----iivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 195 LQEKQGISY----IYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHcCcEE----EEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 8654 8899 99999999999999999999887765443
No 138
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.96 E-value=2.2e-29 Score=198.08 Aligned_cols=161 Identities=17% Similarity=0.157 Sum_probs=118.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----ccCCCCc-------cCCcccccc----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYPV-------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~~-------~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.+ ..+..+++.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~ 104 (237)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPK 104 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCH
Confidence 599999999999999999999999999999999999876432 1122222 112222221
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-CC
Q 030541 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.+++++++++ +.
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~ 182 (237)
T TIGR00968 105 AKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAV--EPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHV 182 (237)
T ss_pred HHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 1223333444321111111123348899999999999 99999999997776677778888899998765 89
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|| +++||+++++.++||+++.+..+..+..++
T Consensus 183 tv----li~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 214 (237)
T TIGR00968 183 TT----VFVTHDQEEAMEVADRIVVMSNGKIEQIGS 214 (237)
T ss_pred EE----EEEeCCHHHHHhhcCEEEEEECCEEEEecC
Confidence 99 999999999999999999999888776544
No 139
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.9e-29 Score=202.51 Aligned_cols=159 Identities=15% Similarity=0.097 Sum_probs=115.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCcc--------CCcccccc------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPVA--------MDIRELIS------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~~--------~~~~~~~~------ 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+. .++.+++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~ 106 (274)
T PRK13644 27 KGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL 106 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc
Confidence 599999999999999999999999999999999999876521 11232221 12222111
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh
Q 030541 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS 128 (175)
Q Consensus 59 ----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~ 128 (175)
...+++.+++..........-+..++|+..++++++. +|++++||||....+...+..++++++++++
T Consensus 107 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~ 184 (274)
T PRK13644 107 CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTM--EPECLIFDEVTSMLDPDSGIAVLERIKKLHE 184 (274)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 1122333343221111111123348899999999999 9999999999666666677788889999887
Q ss_pred CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 129 RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 129 ~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+|.|| +++||+++++. .||+++++..|..+.++
T Consensus 185 ~g~ti----l~~tH~~~~~~-~~d~v~~l~~G~i~~~g 217 (274)
T PRK13644 185 KGKTI----VYITHNLEELH-DADRIIVMDRGKIVLEG 217 (274)
T ss_pred CCCEE----EEEecCHHHHh-hCCEEEEEECCEEEEEC
Confidence 79999 99999999985 69999999888766543
No 140
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.2e-29 Score=188.10 Aligned_cols=137 Identities=20% Similarity=0.167 Sum_probs=108.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCccCCccccccHHHHHHHhCCCCCCc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNGG 73 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (175)
+|++++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..+++.+ +....+. .++.+++
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~--~~~~~~~-~t~~e~l------- 96 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVP--QDPFLFS-GTIRENI------- 96 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEc--CCchhcc-chHHHHh-------
Confidence 599999999999999999999999999999999999976431 1233333 2222232 3555554
Q ss_pred hhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcc
Q 030541 74 LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPC 153 (175)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~ 153 (175)
-+..+++|..+++++.. +|++++||||....+....+.+.++++++++ +.|+ +++||+++++.. ||+
T Consensus 97 -----LS~G~~~rl~la~al~~--~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~ti----i~~sh~~~~~~~-~d~ 163 (171)
T cd03228 97 -----LSGGQRQRIAIARALLR--DPPILILDEATSALDPETEALILEALRALAK-GKTV----IVIAHRLSTIRD-ADR 163 (171)
T ss_pred -----hCHHHHHHHHHHHHHhc--CCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEE----EEEecCHHHHHh-CCE
Confidence 23358899999999999 9999999999666666677788888988854 6889 999999999987 999
Q ss_pred eeEeccc
Q 030541 154 IVCFCCT 160 (175)
Q Consensus 154 ~~~~~~~ 160 (175)
++++..+
T Consensus 164 ~~~l~~g 170 (171)
T cd03228 164 IIVLDDG 170 (171)
T ss_pred EEEEcCC
Confidence 9998765
No 141
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.96 E-value=2.3e-29 Score=201.00 Aligned_cols=161 Identities=14% Similarity=0.127 Sum_probs=117.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------ccCCCCc---------cCCcccccc---
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV---------AMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~---------~~~~~~~~~--- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 115 (265)
T TIGR02769 36 EGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPL 115 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHH
Confidence 599999999999999999999999999999999999875421 1222222 122222110
Q ss_pred --------------HHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHH
Q 030541 59 --------------LEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 59 --------------~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
..++++.+++.. ........-+..++|+..++++++. +|++++||||....+....+.+.+++
T Consensus 116 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~--~p~illLDEPt~~LD~~~~~~l~~~l 193 (265)
T TIGR02769 116 RHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAV--KPKLIVLDEAVSNLDMVLQAVILELL 193 (265)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 123445555531 1111111123348999999999999 99999999996666666677788899
Q ss_pred HHHHhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 124 DHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 124 ~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++++++ |.|| +++||+++++.+++|++++++.+..+.+++
T Consensus 194 ~~~~~~~g~ti----iivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (265)
T TIGR02769 194 RKLQQAFGTAY----LFITHDLRLVQSFCQRVAVMDKGQIVEECD 234 (265)
T ss_pred HHHHHhcCcEE----EEEeCCHHHHHHHhcEEEEEeCCEEEEECC
Confidence 988764 8999 999999999999999999999887665543
No 142
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.7e-29 Score=206.74 Aligned_cols=162 Identities=14% Similarity=0.053 Sum_probs=117.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----------------------ccCCCCcc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------------ENFDYPVA------- 50 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------------------~~~~~~~~------- 50 (175)
+||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. +.+++.+.
T Consensus 51 ~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~ 130 (320)
T PRK13631 51 KNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF 130 (320)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccc
Confidence 599999999999999999999999999999999999865321 11222221
Q ss_pred -CCcccccc----------------HHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccc
Q 030541 51 -MDIRELIS----------------LEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIEL 112 (175)
Q Consensus 51 -~~~~~~~~----------------~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~ 112 (175)
.++.+++. ..++++.+++.. ........-+..++||..++++++. +|+++|||||+...+
T Consensus 131 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~--~p~iLLLDEPtsgLD 208 (320)
T PRK13631 131 KDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAI--QPEILIFDEPTAGLD 208 (320)
T ss_pred cchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEECCccCCC
Confidence 11111110 112333344421 1111111123348899999999999 999999999977666
Q ss_pred cccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 113 FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
......+.+++++++++|.|| +++||+++++..+||+++++..|..+.+++.
T Consensus 209 ~~~~~~l~~~L~~l~~~g~Ti----iivtHd~~~~~~~adri~vl~~G~i~~~g~~ 260 (320)
T PRK13631 209 PKGEHEMMQLILDAKANNKTV----FVITHTMEHVLEVADEVIVMDKGKILKTGTP 260 (320)
T ss_pred HHHHHHHHHHHHHHHHCCCEE----EEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 777778888999887779999 9999999999999999999999887765543
No 143
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.96 E-value=2.4e-29 Score=196.97 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=115.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc----ccceEEEeecCccc-----ccCCCCc---------cCCcccccc----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDPAA-----ENFDYPV---------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~----~~G~I~i~g~~~~~-----~~~~~~~---------~~~~~~~~~---- 58 (175)
+|++++|+||||||||||+|+|+|+.+| ++|+|.++|.++.. ..+++.+ .+++.+++.
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~ 90 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLR 90 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHH
Confidence 5999999999999999999999999998 89999999976421 1222222 112111110
Q ss_pred ------------HHHHHHHhCCCCC-CchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHH
Q 030541 59 ------------LEDVMEELGLGPN-GGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~-~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
..++++.+++... .........+ .++++..++++++. +|++++||||....+......+.+++
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~vllLDEPt~~LD~~~~~~l~~~l 168 (230)
T TIGR02770 91 SLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLL--EPPFLIADEPTTDLDVVNQARVLKLL 168 (230)
T ss_pred HcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHHHHH
Confidence 1233444444310 0011112233 48999999999999 99999999996666666677778889
Q ss_pred HHHHhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 124 DHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 124 ~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++++++ |.|| +++||+++++..++|++++++.|..+.++
T Consensus 169 ~~~~~~~~~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 208 (230)
T TIGR02770 169 RELRQLFGTGI----LLITHDLGVVARIADEVAVMDDGRIVERG 208 (230)
T ss_pred HHHHHhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 988764 8899 99999999999999999999988766543
No 144
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.96 E-value=2e-29 Score=216.76 Aligned_cols=160 Identities=13% Similarity=0.086 Sum_probs=120.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc---------------cCCcccccc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV---------------AMDIRELIS 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~---------------~~~~~~~~~ 58 (175)
+|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ .+++.+++.
T Consensus 28 ~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 107 (490)
T PRK10938 28 AGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQ 107 (490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcc
Confidence 599999999999999999999999999999999998765321 1122222 112222221
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCC
Q 030541 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRN 130 (175)
Q Consensus 59 --------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g 130 (175)
..++++.+++..........-+..|+||..++++++. +|++++||||+...+...+..+.++|++++++|
T Consensus 108 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g 185 (490)
T PRK10938 108 DEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMS--EPDLLILDEPFDGLDVASRQQLAELLASLHQSG 185 (490)
T ss_pred cchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 2345556665432222222223449999999999999 999999999977777777888889999998778
Q ss_pred CcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 131 FNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 131 ~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.|| +++||+++++.++||+++++..+..+.++
T Consensus 186 ~tv----ii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 217 (490)
T PRK10938 186 ITL----VLVLNRFDEIPDFVQFAGVLADCTLAETG 217 (490)
T ss_pred CeE----EEEeCCHHHHHhhCCEEEEEECCEEEEeC
Confidence 999 99999999999999999999988765543
No 145
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.96 E-value=4.2e-29 Score=215.36 Aligned_cols=158 Identities=15% Similarity=0.121 Sum_probs=119.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCc-------cCCcccccc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ .+++.+++.
T Consensus 29 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 108 (501)
T PRK10762 29 PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVN 108 (501)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcccccc
Confidence 499999999999999999999999999999999999865421 1222222 222222110
Q ss_pred -------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHH
Q 030541 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 59 -------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
..++++.+++..........-+..|+||..+++++.. +|++++||||+...+....+.+.+++++
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~ 186 (501)
T PRK10762 109 RFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSF--ESKVIIMDEPTDALTDTETESLFRVIRE 186 (501)
T ss_pred ccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence 1234555555433222222223348999999999999 9999999999777777777888889999
Q ss_pred HHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhH
Q 030541 126 LKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 126 l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
++++|.|| +++||+++++..+||+++++..|..+.
T Consensus 187 l~~~~~tv----ii~sHd~~~~~~~~d~i~~l~~G~i~~ 221 (501)
T PRK10762 187 LKSQGRGI----VYISHRLKEIFEICDDVTVFRDGQFIA 221 (501)
T ss_pred HHHCCCEE----EEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 87778999 999999999999999999999887653
No 146
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.96 E-value=3.6e-29 Score=199.98 Aligned_cols=160 Identities=15% Similarity=-0.026 Sum_probs=115.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCc-ccccCCCCccCCcccccc----------------HHHHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELIS----------------LEDVM 63 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~-~~~~~~~~~~~~~~~~~~----------------~~~~~ 63 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|... ..+...+.+.+++.+++. ...++
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l 128 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKII 128 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999988531 112222222233333221 11233
Q ss_pred HHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhc
Q 030541 64 EELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQV 143 (175)
Q Consensus 64 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~ 143 (175)
+.+++..........-+..++++..++++++. +|++++||||....+...+..+.+.+.+++++|.|| +++||+
T Consensus 129 ~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~--~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~ti----IiisH~ 202 (264)
T PRK13546 129 EFSELGEFIYQPVKKYSSGMRAKLGFSINITV--NPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTI----FFVSHN 202 (264)
T ss_pred HHcCCchhhcCCcccCCHHHHHHHHHHHHHhh--CCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEE----EEEcCC
Confidence 33344332211111223348899999999999 999999999965555556667778888887778999 999999
Q ss_pred hhhhhcCCcceeEeccchhhHHh
Q 030541 144 CIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++++.++|++++++..|..+..+
T Consensus 203 ~~~i~~~~d~i~~l~~G~i~~~g 225 (264)
T PRK13546 203 LGQVRQFCTKIAWIEGGKLKDYG 225 (264)
T ss_pred HHHHHHHcCEEEEEECCEEEEeC
Confidence 99999999999999888765443
No 147
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.6e-29 Score=202.24 Aligned_cols=159 Identities=13% Similarity=0.059 Sum_probs=115.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc--------cCCcccccc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV--------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~--------~~~~~~~~~------- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. +.++|.+ ..++.+++.
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~ 111 (279)
T PRK13635 32 EGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG 111 (279)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCC
Confidence 599999999999999999999999999999999999986532 1222222 112222221
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC
Q 030541 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
...+++.+++..........-+.+++++..++++++. +|++++||||....+......+.+++++++++
T Consensus 112 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~ 189 (279)
T PRK13635 112 VPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLAL--QPDIIILDEATSMLDPRGRREVLETVRQLKEQ 189 (279)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc
Confidence 1223333344322211111123348899999999999 99999999996666677777888899998765
Q ss_pred -CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 130 -NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 130 -g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
|.|| +++||+++++.. ||+++++..|..+.++
T Consensus 190 ~~~ti----livsH~~~~~~~-~d~i~~l~~G~i~~~g 222 (279)
T PRK13635 190 KGITV----LSITHDLDEAAQ-ADRVIVMNKGEILEEG 222 (279)
T ss_pred CCCEE----EEEecCHHHHHc-CCEEEEEECCEEEEEC
Confidence 8999 999999999975 9999999887765444
No 148
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.96 E-value=9.6e-29 Score=189.98 Aligned_cols=151 Identities=17% Similarity=0.093 Sum_probs=111.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc------ccCCCCc-------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYPV-------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~~-------~~~~~~~~~--------- 58 (175)
+||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 104 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDE 104 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccHH
Confidence 599999999999999999999999999999999999876421 1222221 223333221
Q ss_pred -HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEe
Q 030541 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (175)
Q Consensus 59 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~ 137 (175)
..++++.+++..........-+..++++..++++++. +|++++||||+...+....+.+.+++++++++|.|+
T Consensus 105 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~ti---- 178 (201)
T cd03231 105 QVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLS--GRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMV---- 178 (201)
T ss_pred HHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE----
Confidence 2334455555432211111123348899999999999 999999999976666777778888998887778999
Q ss_pred eeehhchhhhhcCCcceeEe
Q 030541 138 LLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 138 l~~sH~~~~~~~~~~~~~~~ 157 (175)
+++||+..+..++++++..+
T Consensus 179 ii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 179 VLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEecCchhhhhccceeEec
Confidence 99999999999999987655
No 149
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.5e-29 Score=203.09 Aligned_cols=159 Identities=14% Similarity=0.042 Sum_probs=114.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc------------ccCCCCcc--------CCcccccc--
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVA--------MDIRELIS-- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------------~~~~~~~~--------~~~~~~~~-- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++|.+. .++.+++.
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~ 115 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFG 115 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHH
Confidence 599999999999999999999999999999999999865320 11222221 11211111
Q ss_pred --------------HHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHH
Q 030541 59 --------------LEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 59 --------------~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
...+++.+++.. ........-+..++||..++++++. +|++++||||....+....+.+.+++
T Consensus 116 ~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lLlLDEPt~~LD~~~~~~l~~~l 193 (289)
T PRK13645 116 PVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAM--DGNTLVLDEPTGGLDPKGEEDFINLF 193 (289)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 012333344421 1111111123348899999999999 99999999996666667777888899
Q ss_pred HHHHh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 124 DHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 124 ~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+++++ +|.|| +++||+++++.++||+++++..|..+..
T Consensus 194 ~~~~~~~~~ti----iiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 194 ERLNKEYKKRI----IMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHhcCCEE----EEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 98865 48999 9999999999999999999998876544
No 150
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.6e-29 Score=196.60 Aligned_cols=159 Identities=16% Similarity=0.125 Sum_probs=117.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----ccCCCCc-------cCCcccccc----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYPV-------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~~-------~~~~~~~~~---------- 58 (175)
+||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 24 ~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~ 103 (235)
T cd03299 24 RGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDK 103 (235)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCH
Confidence 599999999999999999999999999999999999876421 1222221 223222221
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-CC
Q 030541 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
..+.++.+++..........-+..+++|..+++++.. +|++++||||....+....+.+++++++++++ +.
T Consensus 104 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~ 181 (235)
T cd03299 104 KEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVV--NPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV 181 (235)
T ss_pred HHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHc--CCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 1233444444322111111123348899999999999 99999999997777777788888899998654 89
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
|+ +++||+++++.++||+++.+..+..+..
T Consensus 182 ti----li~tH~~~~~~~~~d~i~~l~~G~i~~~ 211 (235)
T cd03299 182 TV----LHVTHDFEEAWALADKVAIMLNGKLIQV 211 (235)
T ss_pred EE----EEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 99 9999999999999999999987766543
No 151
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.2e-29 Score=193.77 Aligned_cols=151 Identities=15% Similarity=0.042 Sum_probs=114.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccC--ccccceEEEeecCcc---cccCCCCccCCccccccHHHHHHHhCCCCCCchh
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPA---AENFDYPVAMDIRELISLEDVMEELGLGPNGGLI 75 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~--~~~~G~I~i~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 75 (175)
+||+++|+||||||||||+|+|+|+. +|++|+|.++|.++. ...+++.+ +....+...++.+++.+....
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~--q~~~~~~~~tv~~~l~~~~~~--- 106 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVE--QQDVHSPNLTVREALRFSALL--- 106 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEec--ccCccccCCcHHHHHHHHHHH---
Confidence 59999999999999999999999986 489999999997752 12233433 222233333455554321100
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchh-hhhcCCcce
Q 030541 76 YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCI-RFRTLPPCI 154 (175)
Q Consensus 76 ~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~-~~~~~~~~~ 154 (175)
..-+..++++..++++++. +|+++++|||....+....+.+.+.+++++++|.|+ +++||+++ ++.+.+|++
T Consensus 107 -~~LSgGe~qrv~la~al~~--~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~ti----iivtH~~~~~~~~~~d~i 179 (192)
T cd03232 107 -RGLSVEQRKRLTIGVELAA--KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAI----LCTIHQPSASIFEKFDRL 179 (192)
T ss_pred -hcCCHHHhHHHHHHHHHhc--CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEE----EEEEcCChHHHHhhCCEE
Confidence 0123348899999999999 999999999977777777888888999987778999 99999998 578999999
Q ss_pred eEecc-chhh
Q 030541 155 VCFCC-THTV 163 (175)
Q Consensus 155 ~~~~~-~~~~ 163 (175)
+++.. +..+
T Consensus 180 ~~l~~~g~i~ 189 (192)
T cd03232 180 LLLKRGGKTV 189 (192)
T ss_pred EEEcCCCeEE
Confidence 99987 6554
No 152
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.96 E-value=4e-29 Score=205.46 Aligned_cols=160 Identities=16% Similarity=0.179 Sum_probs=117.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------ccCCC---------CccCCcccccc---
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~---------~~~~~~~~~~~--- 58 (175)
+||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..+++ .+.+++.+++.
T Consensus 46 ~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l 125 (331)
T PRK15079 46 EGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPL 125 (331)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHH
Confidence 599999999999999999999999999999999999976421 11222 22233333321
Q ss_pred ---------------HHHHHHHhCCCCCC-chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHH
Q 030541 59 ---------------LEDVMEELGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..++++.+++.... ......-+..|+||..++++++. +|+++|+|||+...+...+..+.++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~--~P~llilDEPts~LD~~~~~~i~~l 203 (331)
T PRK15079 126 RTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALIL--EPKLIICDEPVSALDVSIQAQVVNL 203 (331)
T ss_pred HHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHHHH
Confidence 12334455553211 11111123348999999999999 9999999999666666667777889
Q ss_pred HHHHHhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 123 VDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 123 l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
|++++++ |.|+ +++||+++.+.++||++++|..|..+-.+
T Consensus 204 L~~l~~~~~~ti----l~iTHdl~~~~~~~dri~vl~~G~ive~g 244 (331)
T PRK15079 204 LQQLQREMGLSL----IFIAHDLAVVKHISDRVLVMYLGHAVELG 244 (331)
T ss_pred HHHHHHHcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9998764 8999 99999999999999999999988766443
No 153
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=5.9e-30 Score=193.11 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=117.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCccCCccccccHHH-----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPVAMDIRELISLED----------- 61 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~~~~~~~~~~~~~----------- 61 (175)
.||++||+|||||||||.+.+++|+.+|++|+|.+++.++.. ..++|.+ |..+.|...+
T Consensus 29 ~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLp--QE~SIFr~LtV~dNi~~vlE~ 106 (243)
T COG1137 29 SGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLP--QEASIFRKLTVEDNIMAVLEI 106 (243)
T ss_pred CCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCccccc--ccchHhhcCcHHHHHHHHHhh
Confidence 499999999999999999999999999999999999998643 2456665 4444444333
Q ss_pred ----------------HHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHH
Q 030541 62 ----------------VMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 62 ----------------~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
+++++.+..-... +..++| ++.|..+||+++. +|++++||||-...+.-....+++++
T Consensus 107 ~~~d~~~~~~~~~l~~LL~ef~i~hlr~~--~a~sLSGGERRR~EIARaLa~--~P~fiLLDEPFAGVDPiaV~dIq~iI 182 (243)
T COG1137 107 REKDLKKAERKEELDALLEEFHITHLRDS--KAYSLSGGERRRVEIARALAA--NPKFILLDEPFAGVDPIAVIDIQRII 182 (243)
T ss_pred hhcchhHHHHHHHHHHHHHHhchHHHhcC--cccccccchHHHHHHHHHHhc--CCCEEEecCCccCCCchhHHHHHHHH
Confidence 3333333221111 112233 7788999999999 99999999992222222233456799
Q ss_pred HHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+.++.+|..| +++.|+..|..+.|||+.++.+|.+.-+++
T Consensus 183 ~~L~~rgiGv----LITDHNVREtL~i~dRaYIi~~G~vla~G~ 222 (243)
T COG1137 183 KHLKDRGIGV----LITDHNVRETLDICDRAYIISDGKVLAEGS 222 (243)
T ss_pred HHHHhCCceE----EEccccHHHHHhhhheEEEEecCeEEecCC
Confidence 9999999999 999999999999999999999998776554
No 154
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.96 E-value=2.4e-29 Score=189.83 Aligned_cols=143 Identities=13% Similarity=0.026 Sum_probs=111.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc------ccCCCCccCCccccccHHHHHHHhCCCCCCch
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYPVAMDIRELISLEDVMEELGLGPNGGL 74 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 74 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..+++.+ +....+. .++.+++
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~--q~~~~~~-~tv~~~i-------- 95 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLN--QRPYLFD-TTLRNNL-------- 95 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEc--cCCeeec-ccHHHhh--------
Confidence 599999999999999999999999999999999999976421 2234443 2222332 3566655
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcce
Q 030541 75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCI 154 (175)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~ 154 (175)
...-+..++++..++++++. +|++++||||....+....+.+.+.+++++ ++.|| +++||+.+++. .++++
T Consensus 96 -~~~LS~G~~qrv~laral~~--~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~ti----i~~sh~~~~~~-~~d~~ 166 (178)
T cd03247 96 -GRRFSGGERQRLALARILLQ--DAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTL----IWITHHLTGIE-HMDKI 166 (178)
T ss_pred -cccCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEE----EEEecCHHHHH-hCCEE
Confidence 11123358999999999999 999999999966666666777888888885 57899 99999999986 69999
Q ss_pred eEeccchhh
Q 030541 155 VCFCCTHTV 163 (175)
Q Consensus 155 ~~~~~~~~~ 163 (175)
+++..+..+
T Consensus 167 ~~l~~g~i~ 175 (178)
T cd03247 167 LFLENGKII 175 (178)
T ss_pred EEEECCEEE
Confidence 999988765
No 155
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.96 E-value=4.5e-29 Score=197.25 Aligned_cols=159 Identities=17% Similarity=0.145 Sum_probs=115.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccc-----cceEEEeecCccc---------ccCCCCcc------CCcccccc--
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDYPVA------MDIRELIS-- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~-----~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~-- 58 (175)
+||+++|+|+||||||||+|+|+|+++|+ +|+|.++|.++.. +.+++.+. .++.+++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~ 105 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYG 105 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCHHHHHHhH
Confidence 59999999999999999999999999998 9999999876431 12222221 22222221
Q ss_pred ---------------HHHHHHHhCCCC----CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 59 ---------------LEDVMEELGLGP----NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
...+++.+++.. ........-+..++|+..+++++.. +|++++||||....+......+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l 183 (247)
T TIGR00972 106 PRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAV--EPEVLLLDEPTSALDPIATGKI 183 (247)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 122334445431 1111111123348999999999999 9999999999666666667778
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.++++++++ +.|| +++||+++++.++||+++++..|..+.+.
T Consensus 184 ~~~l~~~~~-~~ti----iivsH~~~~~~~~~d~i~~l~~G~i~~~~ 225 (247)
T TIGR00972 184 EELIQELKK-KYTI----VIVTHNMQQAARISDRTAFFYDGELVEYG 225 (247)
T ss_pred HHHHHHHHh-cCeE----EEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 889998866 4889 99999999999999999999988765443
No 156
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.96 E-value=4.1e-29 Score=199.10 Aligned_cols=163 Identities=13% Similarity=0.082 Sum_probs=117.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccc---cceEEEeecCccc------------ccCCCCc-------cCCcccccc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA------------ENFDYPV-------AMDIRELIS 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~---~G~I~i~g~~~~~------------~~~~~~~-------~~~~~~~~~ 58 (175)
+||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ..++|.+ ..++.+++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 108 (262)
T PRK09984 29 HGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVL 108 (262)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHH
Confidence 59999999999999999999999999886 4999999976421 1122222 122222211
Q ss_pred ------------------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccc
Q 030541 59 ------------------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFT 114 (175)
Q Consensus 59 ------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~ 114 (175)
..++++.+++..........-+..+++|..+++++.. +|++++||||....+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~ 186 (262)
T PRK09984 109 IGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQ--QAKVILADEPIASLDPE 186 (262)
T ss_pred hhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhc--CCCEEEecCccccCCHH
Confidence 1223333333211111111122348899999999999 99999999997666677
Q ss_pred cchhHHHHHHHHHh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhhh
Q 030541 115 HVPVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYS 169 (175)
Q Consensus 115 ~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (175)
..+.+.++|+++++ +|.|| +++||+++++.++|++++++..+..+.++++.
T Consensus 187 ~~~~l~~~l~~~~~~~g~tv----ii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~ 238 (262)
T PRK09984 187 SARIVMDTLRDINQNDGITV----VVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238 (262)
T ss_pred HHHHHHHHHHHHHHhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 77788889999875 48999 99999999999999999999988876655443
No 157
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2e-29 Score=189.95 Aligned_cols=160 Identities=20% Similarity=0.241 Sum_probs=125.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------------ccCCCCccCCccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELI--------- 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------------~~~~~~~~~~~~~~~--------- 57 (175)
+|.+.++|||||||||||+.+++.+.++++|+|+++|.+... +...+...+++++..
T Consensus 26 ~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSq 105 (252)
T COG4604 26 KGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQ 105 (252)
T ss_pred CCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccC
Confidence 589999999999999999999999999999999999987532 111222222333222
Q ss_pred ---------cHHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 58 ---------SLEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 58 ---------~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
...+.++.+.+..-.. ...+++| |+||.++|..+++ |.++++||||-...++.+.-.+++.++++
T Consensus 106 GRlt~eD~~~I~~aieyl~L~~l~d--ryLd~LSGGQrQRAfIAMVlaQ--dTdyvlLDEPLNNLDmkHsv~iMk~Lrrl 181 (252)
T COG4604 106 GRLTKEDRRIINEAIEYLHLEDLSD--RYLDELSGGQRQRAFIAMVLAQ--DTDYVLLDEPLNNLDMKHSVQIMKILRRL 181 (252)
T ss_pred CCCchHHHHHHHHHHHHhcccchHH--HhHHhcccchhhhhhhheeeec--cCcEEEecCcccccchHHHHHHHHHHHHH
Confidence 2456777777655432 2335555 8999999999999 99999999996666666666788899998
Q ss_pred Hh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
++ -|+|| +++-|++..++-++|.++.+..|.++.|+..
T Consensus 182 a~el~Kti----viVlHDINfAS~YsD~IVAlK~G~vv~~G~~ 220 (252)
T COG4604 182 ADELGKTI----VVVLHDINFASCYSDHIVALKNGKVVKQGSP 220 (252)
T ss_pred HHHhCCeE----EEEEecccHHHhhhhheeeecCCEEEecCCH
Confidence 65 59999 9999999999999999999999999888764
No 158
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.96 E-value=6.3e-29 Score=194.04 Aligned_cols=158 Identities=20% Similarity=0.184 Sum_probs=113.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc---cccceEEEeecCccc----ccCCCCc-------cCCccccccHH------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA----ENFDYPV-------AMDIRELISLE------ 60 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~---~~~G~I~i~g~~~~~----~~~~~~~-------~~~~~~~~~~~------ 60 (175)
+||+++|+||||||||||+|+|+|+++ |++|+|.++|.++.. +.+++.+ .+++.+++...
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~ 111 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLP 111 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcc
Confidence 499999999999999999999999999 999999999876421 1222222 22333322210
Q ss_pred -------------H-HHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 61 -------------D-VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 61 -------------~-~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
. .++.+++..........-+..+++|..++++++. +|++++||||....+......+.++++++
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~illlDEP~~gLD~~~~~~~~~~l~~~ 189 (226)
T cd03234 112 RKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW--DPKVLILDEPTSGLDSFTALNLVSTLSQL 189 (226)
T ss_pred cccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh--CCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 0 1222222111101111112348899999999999 99999999996666677777888899998
Q ss_pred HhCCCcEEEEeeeehhch-hhhhcCCcceeEeccchhhH
Q 030541 127 KSRNFNVCAVYLLDSQVC-IRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~-~~~~~~~~~~~~~~~~~~~~ 164 (175)
++++.|+ +++||+. +++.+++|+++++..+..+.
T Consensus 190 ~~~~~ti----ii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 190 ARRNRIV----ILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred HHCCCEE----EEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 7778999 9999999 58999999999999887654
No 159
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8e-29 Score=213.11 Aligned_cols=159 Identities=13% Similarity=0.096 Sum_probs=118.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCc-------cCCcccccc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 23 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 102 (491)
T PRK10982 23 PHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTK 102 (491)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccccc
Confidence 599999999999999999999999999999999999975421 1222222 122222111
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..|+||..+++++.. +|+++|||||+...+......+.++++++
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~l 180 (491)
T PRK10982 103 GMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSY--NAKIVIMDEPTSSLTEKEVNHLFTIIRKL 180 (491)
T ss_pred ccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 1233444444322211221223348999999999999 99999999997776677778888899998
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+++|.|| +++||+++++..+||+++++..+..+.+
T Consensus 181 ~~~g~tv----ii~tH~~~~~~~~~d~i~~l~~G~i~~~ 215 (491)
T PRK10982 181 KERGCGI----VYISHKMEEIFQLCDEITILRDGQWIAT 215 (491)
T ss_pred HhCCCEE----EEEecCHHHHHHhCCEEEEEECCEEEee
Confidence 8789999 9999999999999999999998876543
No 160
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.8e-29 Score=214.09 Aligned_cols=157 Identities=15% Similarity=0.121 Sum_probs=118.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCc----------cCCcccccc----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV----------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~----------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..++|.+ .+++.+++.
T Consensus 288 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~ 367 (510)
T PRK09700 288 RGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRS 367 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccc
Confidence 599999999999999999999999999999999999865321 1233322 122222110
Q ss_pred ---------------------HHHHHHHhCCC-CCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccc
Q 030541 59 ---------------------LEDVMEELGLG-PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHV 116 (175)
Q Consensus 59 ---------------------~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~ 116 (175)
..++++.+++. .........-+..++||..++++++. +|+++|||||+...+....
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~--~p~lLlLDEPt~~LD~~~~ 445 (510)
T PRK09700 368 LKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCC--CPEVIIFDEPTRGIDVGAK 445 (510)
T ss_pred cccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhc--CCCEEEECCCCCCcCHHHH
Confidence 12345556663 22222222223348999999999999 9999999999777777778
Q ss_pred hhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 117 PVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 117 ~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
..+.++|++++++|.|| +++||+++++..+||+++++..|..+
T Consensus 446 ~~l~~~l~~l~~~g~tv----i~vsHd~~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 446 AEIYKVMRQLADDGKVI----LMVSSELPEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred HHHHHHHHHHHHCCCEE----EEEcCCHHHHHhhCCEEEEEECCEEE
Confidence 88888999987779999 99999999999999999999888754
No 161
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=5e-29 Score=194.69 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=114.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCccCCccccccHHHHHHHhCCCCCCc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNGG 73 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (175)
+|++++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..++|.+ +....+. .++.+++.+.....
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~--q~~~~~~-~tv~~~~~~~~~~~ 104 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVL--QDTFLFS-GTIMENIRLGRPNA 104 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEec--CCchhhh-hHHHHHHhccCCCC
Confidence 599999999999999999999999999999999999876431 2233433 2222222 24444443321100
Q ss_pred ------------------------------hhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHH
Q 030541 74 ------------------------------LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 74 ------------------------------~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
.....-+..+++|..|+++++. +|++++||||....+...++.+.+++
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~--~p~llllDEP~~~LD~~~~~~l~~~l 182 (229)
T cd03254 105 TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR--DPKILILDEATSNIDTETEKLIQEAL 182 (229)
T ss_pred CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHH
Confidence 0001112248899999999999 99999999996666666677788889
Q ss_pred HHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
++++ ++.|| +++||+.+++. .|++++++..+..+.+.++
T Consensus 183 ~~~~-~~~ti----i~~sh~~~~~~-~~d~i~~l~~g~~~~~~~~ 221 (229)
T cd03254 183 EKLM-KGRTS----IIIAHRLSTIK-NADKILVLDDGKIIEEGTH 221 (229)
T ss_pred HHhc-CCCEE----EEEecCHHHHh-hCCEEEEEeCCeEEEeCCH
Confidence 8885 48899 99999999986 4999999999887765543
No 162
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=7.7e-29 Score=198.36 Aligned_cols=158 Identities=11% Similarity=0.054 Sum_probs=115.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCcc--------CCcccccc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA--------MDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~--------~~~~~~~~------- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.+++.+. .+..+++.
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~ 113 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA 113 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcC
Confidence 599999999999999999999999999999999999976421 12233221 11111110
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC
Q 030541 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
...+++.+++..........-+..++++..+++++.. +|+++|||||....+......+.+++++++++
T Consensus 114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 191 (269)
T PRK13648 114 VPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL--NPSVIILDEATSMLDPDARQNLLDLVRKVKSE 191 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 1234455555432211111223348899999999999 99999999996666677777888899988654
Q ss_pred -CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 130 -NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 130 -g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
|.|| +++||+++++.. ||+++++..|..+..
T Consensus 192 ~~~ti----iivtH~~~~~~~-~d~i~~l~~G~i~~~ 223 (269)
T PRK13648 192 HNITI----ISITHDLSEAME-ADHVIVMNKGTVYKE 223 (269)
T ss_pred cCCEE----EEEecCchHHhc-CCEEEEEECCEEEEe
Confidence 8999 999999999986 999999988876533
No 163
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.2e-28 Score=212.84 Aligned_cols=159 Identities=16% Similarity=0.131 Sum_probs=119.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc--ccceEEEeecCccc--------ccCCCCc-------cCCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~--~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+++| ++|+|.++|.++.. ..++|.+ .+++.+++.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 109 (506)
T PRK13549 30 AGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEI 109 (506)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccc
Confidence 5999999999999999999999999996 89999999875421 1222222 122222110
Q ss_pred --------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHH
Q 030541 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 --------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..++++.+++..........-+..|+||..++++++. +|++++||||+...+......+.++++
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~~~l~ 187 (506)
T PRK13549 110 TPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNK--QARLLILDEPTASLTESETAVLLDIIR 187 (506)
T ss_pred cccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 1334555565433222222223348999999999999 999999999976666777778888999
Q ss_pred HHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 125 HLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 125 ~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+++++|.|| +++||+++++..+||+++++..|..+..
T Consensus 188 ~l~~~~~tv----i~~tH~~~~~~~~~d~v~~l~~G~i~~~ 224 (506)
T PRK13549 188 DLKAHGIAC----IYISHKLNEVKAISDTICVIRDGRHIGT 224 (506)
T ss_pred HHHHCCCEE----EEEeCcHHHHHHhcCEEEEEECCEEeee
Confidence 987778999 9999999999999999999998876543
No 164
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=9.8e-29 Score=188.04 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=119.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------------ccCCCCccCCcccccc--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------------~~~~~~~~~~~~~~~~-------- 58 (175)
.||+++|+||||||||||+|.++|...|++|++.++|.+... ++....|.+++++.+.
T Consensus 26 pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~ 105 (259)
T COG4559 26 PGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS 105 (259)
T ss_pred CCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc
Confidence 399999999999999999999999999999999999987421 2222223334444332
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCC----CEEEEeCCCcccccccchhHHHHHH
Q 030541 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDD----DYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 ----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p----~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
...++...++.....+....-+-.++||.-++|.++++..| ++|+||||+...+..+.+...++.+
T Consensus 106 g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR 185 (259)
T COG4559 106 GREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR 185 (259)
T ss_pred CCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHH
Confidence 12233333333222222222223389999999999986444 4999999976666777888888999
Q ss_pred HHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhH
Q 030541 125 HLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 125 ~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
+++.+|..| +.+-||+..++.|||++++|..|+++-
T Consensus 186 ~la~~g~~V----~~VLHDLNLAA~YaDrivll~~Grv~a 221 (259)
T COG4559 186 QLAREGGAV----LAVLHDLNLAAQYADRIVLLHQGRVIA 221 (259)
T ss_pred HHHhcCCcE----EEEEccchHHHHhhheeeeeeCCeEee
Confidence 999999999 889999999999999999999988764
No 165
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.96 E-value=5.6e-29 Score=195.45 Aligned_cols=155 Identities=15% Similarity=0.111 Sum_probs=112.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCccCCccccccHHHHHHHhCCCCCC-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNG- 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 72 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+++.+ +....+. .++.+++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~--q~~~~~~-~tv~~nl~~~~~~~ 103 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVL--QENVLFN-RSIRDNIALADPGM 103 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEc--CCchhcc-chHHHHhhccCCCC
Confidence 599999999999999999999999999999999999976421 1233333 1111111 2333333221100
Q ss_pred ---------------------------chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHH
Q 030541 73 ---------------------------GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 73 ---------------------------~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
........+ .++|+..+++++.. +|++++||||....+....+.+.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~~~l 181 (237)
T cd03252 104 SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIH--NPRILIFDEATSALDYESEHAIMRNM 181 (237)
T ss_pred CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 000011223 38899999999999 99999999996666677777888889
Q ss_pred HHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++++ +|.|| +++||+++++. .|+++++++.+..+.+.
T Consensus 182 ~~~~-~~~ti----ii~sH~~~~~~-~~d~v~~l~~G~i~~~~ 218 (237)
T cd03252 182 HDIC-AGRTV----IIIAHRLSTVK-NADRIIVMEKGRIVEQG 218 (237)
T ss_pred HHhc-CCCEE----EEEeCCHHHHH-hCCEEEEEECCEEEEEc
Confidence 8886 48899 99999999995 69999999988776543
No 166
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.96 E-value=9.2e-29 Score=188.31 Aligned_cols=141 Identities=13% Similarity=0.074 Sum_probs=100.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc---------ccCCCCcc--------CCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVA--------MDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------~~~~~~~~--------~~~~~~~~----- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. +.+++.+. .++.+++.
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~ 96 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLN 96 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHHH
Confidence 599999999999999999999999999999999999876421 12233221 12222211
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..++||..++++++. +|++++||||....+....+.+.+++++++
T Consensus 97 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~~~l~~~~ 174 (190)
T TIGR01166 97 LGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAM--RPDVLLLDEPTAGLDPAGREQMLAILRRLR 174 (190)
T ss_pred cCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 1123333444322111111122348899999999999 999999999966666777778888999987
Q ss_pred hCCCcEEEEeeeehhchhhh
Q 030541 128 SRNFNVCAVYLLDSQVCIRF 147 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~ 147 (175)
++|.|| +++||+++++
T Consensus 175 ~~~~ti----li~sH~~~~~ 190 (190)
T TIGR01166 175 AEGMTV----VISTHDVDLA 190 (190)
T ss_pred HcCCEE----EEEeeccccC
Confidence 778999 9999998764
No 167
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.96 E-value=8.4e-29 Score=196.92 Aligned_cols=161 Identities=15% Similarity=0.077 Sum_probs=117.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecC-----ccc-----------ccCCCCcc---------CCccc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----PAA-----------ENFDYPVA---------MDIRE 55 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-----~~~-----------~~~~~~~~---------~~~~~ 55 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.+ +.. ..++|.+. .+..+
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 110 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGG 110 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHH
Confidence 599999999999999999999999999999999999976 321 11333221 11111
Q ss_pred ccc-----------------HHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccch
Q 030541 56 LIS-----------------LEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVP 117 (175)
Q Consensus 56 ~~~-----------------~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~ 117 (175)
++. ..++++.+++.. ........-+..++||..+++++.. +|++++||||....+.....
T Consensus 111 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~--~p~llllDEPt~~LD~~~~~ 188 (258)
T PRK11701 111 NIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVT--HPRLVFMDEPTGGLDVSVQA 188 (258)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHH
Confidence 110 123445555532 1111111123348999999999999 99999999996666666677
Q ss_pred hHHHHHHHHHhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 118 VLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 118 ~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.+.+.+++++++ |.|| +++||+++++.++||+++++..+..+..++
T Consensus 189 ~l~~~l~~~~~~~~~ti----i~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 189 RLLDLLRGLVRELGLAV----VIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCcEE----EEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 888889888654 8999 999999999999999999999988765543
No 168
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.2e-29 Score=192.91 Aligned_cols=156 Identities=15% Similarity=0.079 Sum_probs=113.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc---cccceEEEeecCccc------ccCCCCccCCccccccHHHHHHHhCCCCC
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA------ENFDYPVAMDIRELISLEDVMEELGLGPN 71 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~---~~~G~I~i~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (175)
+||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..+++.+ +....+...++.+++.+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~--q~~~~~~~~tv~~~l~~~~~ 109 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVS--EEDVHFPTLTVRETLDFALR 109 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEe--cccccCCCCcHHHHHhhhhh
Confidence 599999999999999999999999999 899999999976532 1233333 22223333355555544321
Q ss_pred C--chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-CCcEEEEeeeehhchhhhh
Q 030541 72 G--GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFR 148 (175)
Q Consensus 72 ~--~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~ 148 (175)
. ......-+..++++..++++++. +|++++||||....+...++.+.+++++++++ +.|+ +++++|+.+++.
T Consensus 110 ~~~~~~~~~LS~Ge~qrl~laral~~--~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~---ii~~~h~~~~~~ 184 (202)
T cd03233 110 CKGNEFVRGISGGERKRVSIAEALVS--RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTT---FVSLYQASDEIY 184 (202)
T ss_pred hccccchhhCCHHHHHHHHHHHHHhh--CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEE---EEEEcCCHHHHH
Confidence 1 11111123348999999999999 99999999996666666777888899998665 5665 044566778999
Q ss_pred cCCcceeEeccchhh
Q 030541 149 TLPPCIVCFCCTHTV 163 (175)
Q Consensus 149 ~~~~~~~~~~~~~~~ 163 (175)
++||+++++..|..+
T Consensus 185 ~~~d~i~~l~~G~i~ 199 (202)
T cd03233 185 DLFDKVLVLYEGRQI 199 (202)
T ss_pred HhCCeEEEEECCEEE
Confidence 999999999998765
No 169
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.3e-28 Score=197.34 Aligned_cols=157 Identities=11% Similarity=0.103 Sum_probs=113.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----ccCCCCcc---------CCccccc----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDYPVA---------MDIRELI---------- 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----~~~~~~~~---------~~~~~~~---------- 57 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++|.+. ....+++
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~ 111 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGW 111 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheeccccccccc
Confidence 599999999999999999999999999999999999875421 11222211 0111110
Q ss_pred ----------cHHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 58 ----------SLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 58 ----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
....+++.+++..........-+.+++++..+++++.. +|++++||||....+......+.++|++++
T Consensus 112 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~--~p~llllDEPt~~LD~~~~~~l~~~L~~~~ 189 (272)
T PRK15056 112 LRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQ--QGQVILLDEPFTGVDVKTEARIISLLRELR 189 (272)
T ss_pred ccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 01233445555432211111223348899999999999 999999999966666777778888999987
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhH
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
++|.|| +++||+++++.++|++++++ .|..+.
T Consensus 190 ~~g~tv----iivsH~~~~~~~~~d~v~~~-~G~i~~ 221 (272)
T PRK15056 190 DEGKTM----LVSTHNLGSVTEFCDYTVMV-KGTVLA 221 (272)
T ss_pred hCCCEE----EEEeCCHHHHHHhCCEEEEE-CCEEEe
Confidence 778999 99999999999999999877 555443
No 170
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=6.5e-29 Score=199.91 Aligned_cols=160 Identities=14% Similarity=0.135 Sum_probs=116.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCccC--------Ccccccc------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPVAM--------DIRELIS------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~~~--------~~~~~~~------ 58 (175)
+||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +.+++.+.. ++.+++.
T Consensus 35 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~ 114 (280)
T PRK13633 35 KGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL 114 (280)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc
Confidence 499999999999999999999999999999999999876531 122332210 1111110
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh
Q 030541 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS 128 (175)
Q Consensus 59 ----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~ 128 (175)
...+++.+++..........-+.+++++..+++++.. +|++++||||....+...+..+.++++++++
T Consensus 115 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~~~l~~l~~ 192 (280)
T PRK13633 115 GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM--RPECIIFDEPTAMLDPSGRREVVNTIKELNK 192 (280)
T ss_pred CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 1123333344322211111223348899999999999 9999999999766667777788889999865
Q ss_pred -CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 129 -RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 129 -~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+|.|| +++||+++++.. ||+++++..|..+.+++
T Consensus 193 ~~g~ti----llvtH~~~~~~~-~d~v~~l~~G~i~~~g~ 227 (280)
T PRK13633 193 KYGITI----ILITHYMEEAVE-ADRIIVMDSGKVVMEGT 227 (280)
T ss_pred hcCCEE----EEEecChHHHhc-CCEEEEEECCEEEEecC
Confidence 48999 999999999986 99999999887765544
No 171
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=8.6e-29 Score=193.96 Aligned_cols=156 Identities=17% Similarity=0.122 Sum_probs=112.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCccCCccccccHHHHHHHhCCCCC--
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPN-- 71 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 71 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.+++.+ +....+. .++.+++.+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~--q~~~~~~-~tv~enl~~~~~~~ 103 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVS--QDVFLFN-DTVAENIAYGRPGA 103 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeC--CCCeecc-ccHHHHhhccCCCC
Confidence 599999999999999999999999999999999999875421 1233332 1111111 133333322110
Q ss_pred ----------------------------CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHH
Q 030541 72 ----------------------------GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 72 ----------------------------~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
.......-+..++|+..++++++. +|++++||||....+....+.+.+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~~~l 181 (234)
T cd03251 104 TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLK--DPPILILDEATSALDTESERLVQAAL 181 (234)
T ss_pred CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHH
Confidence 000011112238899999999999 99999999996666666777888899
Q ss_pred HHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++++ +.|| +++||+++++.. ||+++++..+..+.+.+
T Consensus 182 ~~~~~-~~ti----i~~sh~~~~~~~-~d~v~~l~~G~i~~~~~ 219 (234)
T cd03251 182 ERLMK-NRTT----FVIAHRLSTIEN-ADRIVVLEDGKIVERGT 219 (234)
T ss_pred HHhcC-CCEE----EEEecCHHHHhh-CCEEEEecCCeEeeeCC
Confidence 88864 7899 999999999976 99999999988765443
No 172
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.96 E-value=1.3e-28 Score=193.57 Aligned_cols=155 Identities=15% Similarity=0.117 Sum_probs=113.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCccCCccccccHHHHHHHhCCCCCC-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNG- 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 72 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++|.+ +....+. .++.+++.+....
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~--q~~~~~~-~tv~e~l~~~~~~~ 104 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVS--QEPVLFD-GTIAENIRYGKPDA 104 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEEC--Cchhhhh-hhHHHHhhccCCCC
Confidence 599999999999999999999999999999999999976421 1233333 1111222 2344443322110
Q ss_pred -----------------------------chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHH
Q 030541 73 -----------------------------GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 73 -----------------------------~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
......-+..++++..++++++. +|++++||||....+...++.+.+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEP~~gLD~~~~~~l~~~l 182 (238)
T cd03249 105 TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLR--NPKILLLDEATSALDAESEKLVQEAL 182 (238)
T ss_pred CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHH
Confidence 00000112237889999999999 99999999996666677777888899
Q ss_pred HHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++++ +|.|| +++||+++++. .||++++++.+..+.++
T Consensus 183 ~~~~-~g~~v----i~~sh~~~~~~-~~d~v~~l~~G~i~~~~ 219 (238)
T cd03249 183 DRAM-KGRTT----IVIAHRLSTIR-NADLIAVLQNGQVVEQG 219 (238)
T ss_pred HHhc-CCCEE----EEEeCCHHHHh-hCCEEEEEECCEEEEeC
Confidence 8886 78999 99999999997 89999999998776543
No 173
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.96 E-value=2.1e-28 Score=191.06 Aligned_cols=159 Identities=14% Similarity=0.073 Sum_probs=113.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCcc------CCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA------MDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~------~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+++.+. .++.+++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~ 111 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQ 111 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhhcCCC
Confidence 599999999999999999999999999999999999875421 12222221 12222221
Q ss_pred -----HHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh-CCC
Q 030541 59 -----LEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNF 131 (175)
Q Consensus 59 -----~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~ 131 (175)
..++++.+++.. ........-+.+++++..+++++.. +|++++||||....+....+.+.++++++++ .|.
T Consensus 112 ~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 189 (225)
T PRK10247 112 PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQF--MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNI 189 (225)
T ss_pred hHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 123444555531 1111111123348899999999999 9999999999666667777788889999865 488
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
|| +++||+.+++. .||+++.+......+|.
T Consensus 190 tv----ii~sh~~~~~~-~~d~i~~l~~~~~~~~~ 219 (225)
T PRK10247 190 AV----LWVTHDKDEIN-HADKVITLQPHAGEMQE 219 (225)
T ss_pred EE----EEEECChHHHH-hCCEEEEEecccchHhh
Confidence 99 99999999996 69999999644444443
No 174
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=6.6e-29 Score=198.98 Aligned_cols=158 Identities=13% Similarity=0.111 Sum_probs=113.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc--------cCCcccccc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV--------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~--------~~~~~~~~~------- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. +.++|.+ ..++.+++.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~ 113 (271)
T PRK13632 34 EGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK 113 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcC
Confidence 599999999999999999999999999999999999976532 1223322 112222221
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC
Q 030541 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
..++++.+++..........-+..++|+..++++++. +|++++||||....+....+.+.+++++++++
T Consensus 114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~ 191 (271)
T PRK13632 114 VPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLAL--NPEIIIFDESTSMLDPKGKREIKKIMVDLRKT 191 (271)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 0122233333221111111122348899999999999 99999999996666666777888899998765
Q ss_pred -CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 130 -NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 130 -g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+.|| +++||+++++. .||+++++..|..+.+
T Consensus 192 ~~~ti----ii~sH~~~~~~-~~d~v~~l~~G~i~~~ 223 (271)
T PRK13632 192 RKKTL----ISITHDMDEAI-LADKVIVFSEGKLIAQ 223 (271)
T ss_pred cCcEE----EEEEechhHHh-hCCEEEEEECCEEEEe
Confidence 5899 99999999985 7999999988776543
No 175
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.96 E-value=1.1e-28 Score=189.50 Aligned_cols=151 Identities=15% Similarity=0.124 Sum_probs=113.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhcc--CccccceEEEeecCccc--------ccCCCCccCCccccccHHHHHHHhCCCC
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDYPVAMDIRELISLEDVMEELGLGP 70 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl--~~~~~G~I~i~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (175)
+||+++|+|+||||||||+++|+|+ .+|++|+|.++|.++.. ..+++.+ +....+...++.+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~--q~~~~~~~~~~~~~l~--- 99 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAF--QYPPEIPGVKNADFLR--- 99 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEee--cChhhccCccHHHHHh---
Confidence 4999999999999999999999999 57999999999976532 1133333 2222222223333331
Q ss_pred CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhc-
Q 030541 71 NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRT- 149 (175)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~- 149 (175)
.....-+..++++..++++++. +|++++||||....+....+.+.++++++++++.|| +++||+++.+.+
T Consensus 100 ---~~~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~ti----ii~sh~~~~~~~~ 170 (200)
T cd03217 100 ---YVNEGFSGGEKKRNEILQLLLL--EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSV----LIITHYQRLLDYI 170 (200)
T ss_pred ---hccccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEE----EEEecCHHHHHHh
Confidence 0001123358899999999999 999999999966666667778888999987778999 999999999988
Q ss_pred CCcceeEeccchhhHH
Q 030541 150 LPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 150 ~~~~~~~~~~~~~~~~ 165 (175)
++|+++++..+..+..
T Consensus 171 ~~d~i~~l~~G~i~~~ 186 (200)
T cd03217 171 KPDRVHVLYDGRIVKS 186 (200)
T ss_pred hCCEEEEEECCEEEEE
Confidence 7999999998876543
No 176
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.96 E-value=2.2e-28 Score=190.25 Aligned_cols=154 Identities=15% Similarity=0.146 Sum_probs=112.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------ccCCCCc-------cCCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..+++.+ ..+..+++.
T Consensus 30 ~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~ 109 (220)
T TIGR02982 30 PGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALEL 109 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHh
Confidence 599999999999999999999999999999999999876421 1222222 112221111
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+.+++++..++++++. +|++++||||....+....+.+..+++++
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~--~p~illlDEP~~~LD~~~~~~l~~~l~~~ 187 (220)
T TIGR02982 110 QPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVH--RPKLVLADEPTAALDSKSGRDVVELMQKL 187 (220)
T ss_pred ccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 2334445555432222222223348999999999999 99999999996666666777788899988
Q ss_pred Hh-CCCcEEEEeeeehhchhhhhcCCcceeEeccch
Q 030541 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
++ ++.|| +++||+++ ..++||+++.+..+.
T Consensus 188 ~~~~~~ti----i~~sh~~~-~~~~~d~v~~l~~g~ 218 (220)
T TIGR02982 188 AREQGCTI----LIVTHDNR-ILDVADRIVHMEDGK 218 (220)
T ss_pred HHHcCCEE----EEEeCCHH-HHhhCCEEEEEECCE
Confidence 65 58999 99999998 458999999998764
No 177
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.96 E-value=1.4e-28 Score=212.61 Aligned_cols=158 Identities=13% Similarity=0.105 Sum_probs=119.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCcc----------CCccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPVA----------MDIRELI----- 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~~----------~~~~~~~----- 57 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..++|.+. .++.+++
T Consensus 288 ~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~ 367 (510)
T PRK15439 288 AGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTH 367 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhh
Confidence 599999999999999999999999999999999999865321 12333321 1221111
Q ss_pred -------c-------HHHHHHHhCCC-CCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHH
Q 030541 58 -------S-------LEDVMEELGLG-PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 58 -------~-------~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
. ..++++.+++. .........-+..++||..+++++.. +|++||||||+...+....+.+.++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~--~p~lLlLDEPt~gLD~~~~~~l~~~ 445 (510)
T PRK15439 368 NRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEA--SPQLLIVDEPTRGVDVSARNDIYQL 445 (510)
T ss_pred hhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhh--CCCEEEECCCCcCcChhHHHHHHHH
Confidence 0 12345556664 22222222223348999999999999 9999999999777777778888889
Q ss_pred HHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhH
Q 030541 123 VDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
|++++++|.|| +++||+++++.++||++++++.+..+.
T Consensus 446 l~~l~~~g~ti----IivsHd~~~i~~~~d~i~~l~~G~i~~ 483 (510)
T PRK15439 446 IRSIAAQNVAV----LFISSDLEEIEQMADRVLVMHQGEISG 483 (510)
T ss_pred HHHHHhCCCEE----EEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99998789999 999999999999999999999887653
No 178
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.96 E-value=1.3e-28 Score=191.33 Aligned_cols=152 Identities=20% Similarity=0.156 Sum_probs=110.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCccCCccccccHHHHHHHhCCCCCCc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNGG 73 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (175)
+|++++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+++.+ +....+. .++.+++.+.....
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~--q~~~~~~-~tv~e~l~~~~~~~ 105 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVP--QDVTLFY-GTLRDNITLGAPLA 105 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeC--CCCcccc-chHHHHhhcCCCCC
Confidence 599999999999999999999999999999999999875421 1233333 1111222 23333332211000
Q ss_pred -----------------hhh-----------hHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHH
Q 030541 74 -----------------LIY-----------CMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 74 -----------------~~~-----------~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
... ....+ .+++|..++++++. +|++++||||+...+....+.+.++|
T Consensus 106 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l 183 (220)
T cd03245 106 DDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN--DPPILLLDEPTSAMDMNSEERLKERL 183 (220)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHH
Confidence 000 00123 38899999999999 99999999997666677777888899
Q ss_pred HHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
++++++ .|| +++||+++++ ++||+++.+..+..+
T Consensus 184 ~~~~~~-~ti----i~~sH~~~~~-~~~d~v~~l~~g~i~ 217 (220)
T cd03245 184 RQLLGD-KTL----IIITHRPSLL-DLVDRIIVMDSGRIV 217 (220)
T ss_pred HHhcCC-CEE----EEEeCCHHHH-HhCCEEEEEeCCeEe
Confidence 988654 788 9999999987 699999999887654
No 179
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.4e-28 Score=201.98 Aligned_cols=160 Identities=16% Similarity=0.118 Sum_probs=118.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------ccCCCCc---------cCCcccccc---
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV---------AMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~---------~~~~~~~~~--- 58 (175)
+||++||+|+||||||||+++|+|+++|++|+|.++|.++.. ..+++.+ .+++.+++.
T Consensus 40 ~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~ 119 (327)
T PRK11308 40 RGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPL 119 (327)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHH
Confidence 599999999999999999999999999999999999976421 1222222 122222211
Q ss_pred --------------HHHHHHHhCCCCCC-chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHH
Q 030541 59 --------------LEDVMEELGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 59 --------------~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
..++++.+++.... ......-+..|+||..++++++. +|++||+|||+...+...+..+.++|
T Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~--~P~lLilDEPts~LD~~~~~~i~~lL 197 (327)
T PRK11308 120 LINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALML--DPDVVVADEPVSALDVSVQAQVLNLM 197 (327)
T ss_pred HHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHc--CCCEEEEECCCccCCHHHHHHHHHHH
Confidence 23445556664211 11111123348999999999999 99999999996666666677788899
Q ss_pred HHHHh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 124 DHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 124 ~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++++ .|.|+ +++||++..+.++||++++|..|..+-.+
T Consensus 198 ~~l~~~~g~ti----l~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 198 MDLQQELGLSY----VFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99866 48999 99999999999999999999988776443
No 180
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.96 E-value=2.3e-28 Score=194.00 Aligned_cols=153 Identities=16% Similarity=0.160 Sum_probs=111.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCc---ccccCCCCcc--CCccccc---------cHHHHHHHh
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAENFDYPVA--MDIRELI---------SLEDVMEEL 66 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~---~~~~~~~~~~--~~~~~~~---------~~~~~~~~~ 66 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.+++... ..+...+.+. .+..+++ ....+++.+
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRV 108 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHc
Confidence 5999999999999999999999999999999999976321 0111111111 1122211 123445555
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-CCcEEEEeeeehhchh
Q 030541 67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCI 145 (175)
Q Consensus 67 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~ 145 (175)
++..........-+..++++..+++++.. +|++++||||....+......+.++|++++++ |.|| +++||+++
T Consensus 109 gl~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~ti----iivsH~~~ 182 (251)
T PRK09544 109 QAGHLIDAPMQKLSGGETQRVLLARALLN--RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAV----LMVSHDLH 182 (251)
T ss_pred CChHHHhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEE----EEEecCHH
Confidence 55432211221223348999999999999 99999999996666666777888889888765 8999 99999999
Q ss_pred hhhcCCcceeEecc
Q 030541 146 RFRTLPPCIVCFCC 159 (175)
Q Consensus 146 ~~~~~~~~~~~~~~ 159 (175)
++.++|++++++..
T Consensus 183 ~i~~~~d~i~~l~~ 196 (251)
T PRK09544 183 LVMAKTDEVLCLNH 196 (251)
T ss_pred HHHHhCCEEEEECC
Confidence 99999999999975
No 181
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=1.3e-28 Score=196.69 Aligned_cols=154 Identities=21% Similarity=0.184 Sum_probs=115.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc------------------ccCCCCccCCcccccc----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------------------~~~~~~~~~~~~~~~~---- 58 (175)
+|||++|.|-+|||||||+|++.++++|++|+|.++|.++.. +++++.|..++.++..
T Consensus 53 ~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe 132 (386)
T COG4175 53 EGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 132 (386)
T ss_pred CCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee
Confidence 599999999999999999999999999999999999988532 2333334333333332
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchh-----H
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV-----L 119 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~-----~ 119 (175)
..++++.+++..+.... ..++| ++||.-|||++.. +|+++++||| ++++|. +
T Consensus 133 v~Gv~~~er~~~a~~~l~~VgL~~~~~~y--p~eLSGGMqQRVGLARAla~--~~~IlLMDEa-----FSALDPLIR~~m 203 (386)
T COG4175 133 VQGVPKAEREERALEALELVGLEGYADKY--PNELSGGMQQRVGLARALAN--DPDILLMDEA-----FSALDPLIRTEM 203 (386)
T ss_pred ecCCCHHHHHHHHHHHHHHcCchhhhhcC--cccccchHHHHHHHHHHHcc--CCCEEEecCc-----hhhcChHHHHHH
Confidence 23444445544433222 23444 8999999999999 9999999999 666553 3
Q ss_pred HHHHHHH-HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 120 RNFVDHL-KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l-~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+.-|.++ ++-++|| +++||+++|+.++-+||.+|..|.+|-+++
T Consensus 204 QdeLl~Lq~~l~KTI----vFitHDLdEAlriG~rIaimkdG~ivQ~Gt 248 (386)
T COG4175 204 QDELLELQAKLKKTI----VFITHDLDEALRIGDRIAIMKDGEIVQVGT 248 (386)
T ss_pred HHHHHHHHHHhCCeE----EEEecCHHHHHhccceEEEecCCeEEEeCC
Confidence 3344455 4558999 999999999999999999999998875543
No 182
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=3.5e-28 Score=187.66 Aligned_cols=150 Identities=18% Similarity=0.193 Sum_probs=108.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----ccCCCCc-------cCCcccccc-----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDYPV-------AMDIRELIS----------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----~~~~~~~-------~~~~~~~~~----------- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.+... ..+++.+ ..++.+++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~ 106 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEEL 106 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHH
Confidence 599999999999999999999999999999999999876321 1122221 223333221
Q ss_pred -HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEe
Q 030541 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (175)
Q Consensus 59 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~ 137 (175)
..++++.+++..........-+..+++|..+++++.. +|++++||||....+......+.+++++++++|.|+
T Consensus 107 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti---- 180 (207)
T PRK13539 107 DIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVS--NRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIV---- 180 (207)
T ss_pred HHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEE----
Confidence 2334445555332111111223348899999999999 999999999966666667778888999887779999
Q ss_pred eeehhchhhhhcCCcceeEec
Q 030541 138 LLDSQVCIRFRTLPPCIVCFC 158 (175)
Q Consensus 138 l~~sH~~~~~~~~~~~~~~~~ 158 (175)
+++||+.+++.. ++++-+.
T Consensus 181 ii~sH~~~~~~~--~~~~~~~ 199 (207)
T PRK13539 181 IAATHIPLGLPG--ARELDLG 199 (207)
T ss_pred EEEeCCchhhcc--CcEEeec
Confidence 999999999987 6665553
No 183
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.96 E-value=2e-28 Score=194.10 Aligned_cols=158 Identities=16% Similarity=0.108 Sum_probs=114.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecC-----ccc-----------ccCCCCcc---------CCccc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----PAA-----------ENFDYPVA---------MDIRE 55 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-----~~~-----------~~~~~~~~---------~~~~~ 55 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.+ +.. +.+++.+. .+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 107 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGA 107 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHH
Confidence 599999999999999999999999999999999999865 311 11222221 11111
Q ss_pred cc-----------------cHHHHHHHhCCCCCCchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccc
Q 030541 56 LI-----------------SLEDVMEELGLGPNGGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHV 116 (175)
Q Consensus 56 ~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~ 116 (175)
++ ...++++.+++.... .......+ .++||..++++++. +|++++||||....+....
T Consensus 108 ~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~LSgG~~qrv~laral~~--~p~vlllDEP~~~LD~~~~ 184 (253)
T TIGR02323 108 NIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTR-IDDLPRAFSGGMQQRLQIARNLVT--RPRLVFMDEPTGGLDVSVQ 184 (253)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHcCCChhh-hhcCchhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHH
Confidence 11 012334445543111 11122233 48999999999999 9999999999666666677
Q ss_pred hhHHHHHHHHHh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 117 PVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 117 ~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
..+.++++++.+ .|.|+ +++||+++++.++++++++++.+..+..
T Consensus 185 ~~l~~~l~~~~~~~~~ti----i~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 185 ARLLDLLRGLVRDLGLAV----IIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHHHHHHHHHHHhcCCEE----EEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 788888888765 48999 9999999999999999999998876644
No 184
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.5e-28 Score=210.54 Aligned_cols=157 Identities=17% Similarity=0.155 Sum_probs=118.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCc-------cCCcccccc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++|.+ ..++.+++.
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 108 (501)
T PRK11288 29 AGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHK 108 (501)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccc
Confidence 599999999999999999999999999999999999865421 1222222 122221110
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..|+||..+++++.. +|++++||||+...+....+.+.++++++
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 186 (501)
T PRK11288 109 GGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALAR--NARVIAFDEPTSSLSAREIEQLFRVIREL 186 (501)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHh--CCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 1234555555432222222223348999999999999 99999999997777677778888899998
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+++|.|| +++||+++++..+||+++++..|..+
T Consensus 187 ~~~g~ti----iiitHd~~~~~~~~d~i~~l~~G~i~ 219 (501)
T PRK11288 187 RAEGRVI----LYVSHRMEEIFALCDAITVFKDGRYV 219 (501)
T ss_pred HhCCCEE----EEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 7789999 99999999999999999999988755
No 185
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.95 E-value=1.3e-28 Score=210.72 Aligned_cols=159 Identities=15% Similarity=0.029 Sum_probs=118.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcc-cccCCCCccCCcccccc----------------HHHHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-AENFDYPVAMDIRELIS----------------LEDVM 63 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-~~~~~~~~~~~~~~~~~----------------~~~~~ 63 (175)
+|++++|+||||||||||+++|+|+.+|++|+|.++|.+.. .....+.+.+++.+++. ...++
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elL 128 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEII 128 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999886521 11122223234333321 11344
Q ss_pred HHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhc
Q 030541 64 EELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQV 143 (175)
Q Consensus 64 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~ 143 (175)
+.+++..........-+.+++||..+++++.. +|++++||||....+....+.+.++|++++++|.|| +++||+
T Consensus 129 e~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~--~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TI----IIVSHd 202 (549)
T PRK13545 129 EFADIGKFIYQPVKTYSSGMKSRLGFAISVHI--NPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTI----FFISHS 202 (549)
T ss_pred HHcCChhHhhCCcccCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEE----EEEECC
Confidence 44555432222222223448999999999999 999999999966666666777888898887778999 999999
Q ss_pred hhhhhcCCcceeEeccchhhHH
Q 030541 144 CIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
++++.++||+++++..|..+..
T Consensus 203 l~~i~~l~DrIivL~~GkIv~~ 224 (549)
T PRK13545 203 LSQVKSFCTKALWLHYGQVKEY 224 (549)
T ss_pred HHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999998876544
No 186
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=9.9e-29 Score=186.12 Aligned_cols=165 Identities=16% Similarity=0.178 Sum_probs=119.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc---------ccCCCCccCCcccccc-------------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVAMDIRELIS------------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------~~~~~~~~~~~~~~~~------------- 58 (175)
.||.++++||+|||||||+++++|+.+|+.|+|.++|.++.. ++.+..|.++..++..
T Consensus 30 ~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R 109 (259)
T COG4525 30 SGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQR 109 (259)
T ss_pred CCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHH
Confidence 489999999999999999999999999999999999987643 2333444444444433
Q ss_pred ---HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCC-CcccccccchhHHHH-HHHHHhCCCcE
Q 030541 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCP-GQIELFTHVPVLRNF-VDHLKSRNFNV 133 (175)
Q Consensus 59 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP-~~~~~~~~~~~~~~~-l~~l~~~g~tv 133 (175)
..+.+..+++.....+....-+-.++||.-++|++.- +|++|+|||| +..+... ++.++.+ ++-|++.|+.+
T Consensus 110 ~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~--eP~~LlLDEPfgAlDa~t-Re~mQelLldlw~~tgk~~ 186 (259)
T COG4525 110 REIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAV--EPQLLLLDEPFGALDALT-REQMQELLLDLWQETGKQV 186 (259)
T ss_pred HHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhc--CcceEeecCchhhHHHHH-HHHHHHHHHHHHHHhCCeE
Confidence 1233444444443322222223348999999999999 9999999999 3333332 3445555 45567889999
Q ss_pred EEEeeeehhchhhhhcCCcceeEeccchhhHHhhhhccc
Q 030541 134 CAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYSFLF 172 (175)
Q Consensus 134 li~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (175)
+++||+++|+.=+++++++|++++..+...+...|
T Consensus 187 ----lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~df 221 (259)
T COG4525 187 ----LLITHDIEEALFLATRLVVLSPGPGRVVERLPLDF 221 (259)
T ss_pred ----EEEeccHHHHHhhhheeEEecCCCceeeEecCCCH
Confidence 99999999999999999999999877665544433
No 187
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2e-28 Score=201.00 Aligned_cols=160 Identities=14% Similarity=0.131 Sum_probs=117.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc----cccceEEEeecCccc-----------ccCCCCc---------cCCcccc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE----TVRRTMHIVNLDPAA-----------ENFDYPV---------AMDIREL 56 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~----~~~G~I~i~g~~~~~-----------~~~~~~~---------~~~~~~~ 56 (175)
+||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. +.+++.+ .+++.++
T Consensus 32 ~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~ 111 (326)
T PRK11022 32 QGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQ 111 (326)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHH
Confidence 599999999999999999999999997 489999999986421 1222222 1222211
Q ss_pred cc-----------------HHHHHHHhCCCCCC-chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccc
Q 030541 57 IS-----------------LEDVMEELGLGPNG-GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHV 116 (175)
Q Consensus 57 ~~-----------------~~~~~~~~~l~~~~-~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~ 116 (175)
+. ..++++.+++.... .......++ .|+||..++++++. +|+++|+|||+...+...+
T Consensus 112 i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~--~P~llilDEPts~LD~~~~ 189 (326)
T PRK11022 112 IMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIAC--RPKLLIADEPTTALDVTIQ 189 (326)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHH
Confidence 10 13445556664311 011112233 48999999999999 9999999999666656666
Q ss_pred hhHHHHHHHHHh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 117 PVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 117 ~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
..+.++|+++++ .|.|+ +++||+++.+.+++|++++|..|..+-++
T Consensus 190 ~~il~lL~~l~~~~g~ti----l~iTHdl~~~~~~adri~vm~~G~ive~g 236 (326)
T PRK11022 190 AQIIELLLELQQKENMAL----VLITHDLALVAEAAHKIIVMYAGQVVETG 236 (326)
T ss_pred HHHHHHHHHHHHhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 777889999875 58999 99999999999999999999988876544
No 188
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.95 E-value=2e-28 Score=194.37 Aligned_cols=161 Identities=15% Similarity=0.119 Sum_probs=116.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc----ccceEEEeecCccc-----ccCCCCcc---------CCccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDPAA-----ENFDYPVA---------MDIRELI----- 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~----~~G~I~i~g~~~~~-----~~~~~~~~---------~~~~~~~----- 57 (175)
+||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.. +.++|.+. .+..++.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~ 107 (254)
T PRK10418 28 RGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCL 107 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHH
Confidence 5999999999999999999999999999 99999999876421 11222221 1111110
Q ss_pred ---------cHHHHHHHhCCCCCC---chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHH
Q 030541 58 ---------SLEDVMEELGLGPNG---GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 58 ---------~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
...++++.+++.... ......-+..++|+..++++++. +|+++|||||....+......+.++|++
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lLlLDEPt~~LD~~~~~~l~~~L~~ 185 (254)
T PRK10418 108 ALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLC--EAPFIIADEPTTDLDVVAQARILDLLES 185 (254)
T ss_pred HcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 012344555554311 11111123348899999999999 9999999999666666667778888988
Q ss_pred HHh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 126 LKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 126 l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++ .|.|| +++||+++++.++||+++++..+..+.+++
T Consensus 186 ~~~~~g~ti----l~~sH~~~~~~~~~d~v~~l~~G~i~~~~~ 224 (254)
T PRK10418 186 IVQKRALGM----LLVTHDMGVVARLADDVAVMSHGRIVEQGD 224 (254)
T ss_pred HHHhcCcEE----EEEecCHHHHHHhCCEEEEEECCEEEEecC
Confidence 865 48999 999999999999999999999887765443
No 189
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=1.8e-28 Score=190.10 Aligned_cols=157 Identities=14% Similarity=0.032 Sum_probs=121.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCc--ccccCCCCccCCccccccH----------------HHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELISL----------------EDV 62 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~--~~~~~~~~~~~~~~~~~~~----------------~~~ 62 (175)
+||.+||+|+||||||||+|+|+|.++|++|+|.+.|.-. -.-..++.+.++.++++.. .++
T Consensus 52 ~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eI 131 (249)
T COG1134 52 KGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEI 131 (249)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 5999999999999999999999999999999999998743 3346678888888877652 233
Q ss_pred HHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehh
Q 030541 63 MEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (175)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH 142 (175)
.+--+++.....+....+-.++.|.+++-+... +|++||+||-...-+.+.++...+.+.++.+++.|+ +++||
T Consensus 132 ieFaELG~fi~~PvktYSSGM~aRLaFsia~~~--~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~ti----v~VSH 205 (249)
T COG1134 132 IEFAELGDFIDQPVKTYSSGMYARLAFSVATHV--EPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTI----VLVSH 205 (249)
T ss_pred HHHHHHHHHhhCchhhccHHHHHHHHHhhhhhc--CCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEE----EEEEC
Confidence 333334433333333334447777777777777 999999999944444666677777888887778999 99999
Q ss_pred chhhhhcCCcceeEeccchhh
Q 030541 143 VCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~ 163 (175)
++..+.++||+++.++.|..+
T Consensus 206 d~~~I~~~Cd~~i~l~~G~i~ 226 (249)
T COG1134 206 DLGAIKQYCDRAIWLEHGQIR 226 (249)
T ss_pred CHHHHHHhcCeeEEEeCCEEE
Confidence 999999999999999988544
No 190
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.6e-28 Score=197.85 Aligned_cols=159 Identities=14% Similarity=0.099 Sum_probs=115.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcccc---ceEEEeecCccc-------ccCCCCc--------cCCcccccc----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVR---RTMHIVNLDPAA-------ENFDYPV--------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~---G~I~i~g~~~~~-------~~~~~~~--------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+++|+|+++|++ |+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 32 ~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~ 111 (282)
T PRK13640 32 RGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLE 111 (282)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHH
Confidence 599999999999999999999999999987 899999976532 1223322 122222221
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..++++..++++++. +|++++||||....+......+.++++++
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~--~P~llllDEPt~gLD~~~~~~l~~~l~~l 189 (282)
T PRK13640 112 NRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAV--EPKIIILDESTSMLDPAGKEQILKLIRKL 189 (282)
T ss_pred hCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 1223444444322211111223348899999999999 99999999997776677777888899998
Q ss_pred HhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 127 KSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 127 ~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++ |.|| +++||+++++. .||+++++..|..+.++
T Consensus 190 ~~~~g~tv----li~tH~~~~~~-~~d~i~~l~~G~i~~~g 225 (282)
T PRK13640 190 KKKNNLTV----ISITHDIDEAN-MADQVLVLDDGKLLAQG 225 (282)
T ss_pred HHhcCCEE----EEEecCHHHHH-hCCEEEEEECCEEEEeC
Confidence 754 8999 99999999984 79999999887766544
No 191
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.95 E-value=2.2e-28 Score=193.67 Aligned_cols=162 Identities=17% Similarity=0.146 Sum_probs=114.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc-------cCCcccccc--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV-------AMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~-------~~~~~~~~~-------- 58 (175)
+||+++|+||||||||||+++|+|+.++ +|+|.++|.++.. ..++|.+ ..+..+++.
T Consensus 21 ~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~ 99 (248)
T PRK03695 21 AGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTR 99 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccCCC
Confidence 5999999999999999999999999865 9999999976421 1123322 112211110
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhc----c-CCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDN----Y-LDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~----~-~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..++++..++++++. . -+|++++||||....+......+.++++++
T Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~ 179 (248)
T PRK03695 100 TEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSEL 179 (248)
T ss_pred cHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 1233444444322111111123348899999998874 0 046999999996666666677888899998
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++|.|| +++||+++++.++||++++++.+..+.+++
T Consensus 180 ~~~~~tv----i~~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 216 (248)
T PRK03695 180 CQQGIAV----VMSSHDLNHTLRHADRVWLLKQGKLLASGR 216 (248)
T ss_pred HhCCCEE----EEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 7778999 999999999999999999999887665433
No 192
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.5e-28 Score=197.49 Aligned_cols=160 Identities=13% Similarity=0.051 Sum_probs=115.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCcc--------CCcccccc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA--------MDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~--------~~~~~~~~------- 58 (175)
+||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.. ..+++.+. .++.+++.
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~ 111 (277)
T PRK13642 32 KGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQG 111 (277)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcC
Confidence 599999999999999999999999999999999999976431 12233221 12222111
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC
Q 030541 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
...+++.+++..........-+..++++..++++++. +|+++|||||....+......+.+++++++++
T Consensus 112 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~--~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~ 189 (277)
T PRK13642 112 IPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIAL--RPEIIILDESTSMLDPTGRQEIMRVIHEIKEK 189 (277)
T ss_pred CCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 0122233333221111111122347899999999999 99999999997666677777888899998765
Q ss_pred -CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 130 -NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 130 -g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|.|| +++||+++++. .||+++++..+..+.+++
T Consensus 190 ~g~ti----il~sH~~~~~~-~~d~i~~l~~G~i~~~g~ 223 (277)
T PRK13642 190 YQLTV----LSITHDLDEAA-SSDRILVMKAGEIIKEAA 223 (277)
T ss_pred cCCEE----EEEeCCHHHHH-hCCEEEEEECCEEEEeCC
Confidence 8999 99999999997 599999999888765444
No 193
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.7e-28 Score=209.53 Aligned_cols=158 Identities=14% Similarity=0.092 Sum_probs=118.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCc----------cCCcccccc----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV----------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~----------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..++|.+ ..++.+++.
T Consensus 278 ~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~ 357 (501)
T PRK11288 278 AGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISAR 357 (501)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccc
Confidence 599999999999999999999999999999999999865321 1122221 122222210
Q ss_pred ------------------HHHHHHHhCCC-CCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 59 ------------------LEDVMEELGLG-PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 ------------------~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..++++.+++. .........-+..|+||..+++++.. +|+++|||||+...+...+..+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l 435 (501)
T PRK11288 358 RHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSE--DMKVILLDEPTRGIDVGAKHEI 435 (501)
T ss_pred hhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHcc--CCCEEEEcCCCCCCCHhHHHHH
Confidence 12344555552 22112222223348999999999999 9999999999777777778888
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhH
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
.+++++++++|.|| +++||+++++.++|++++++..+..+.
T Consensus 436 ~~~l~~l~~~g~tv----iivsHd~~~~~~~~d~i~~l~~g~i~~ 476 (501)
T PRK11288 436 YNVIYELAAQGVAV----LFVSSDLPEVLGVADRIVVMREGRIAG 476 (501)
T ss_pred HHHHHHHHhCCCEE----EEECCCHHHHHhhCCEEEEEECCEEEE
Confidence 88999998889999 999999999999999999998887553
No 194
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.95 E-value=3.1e-28 Score=195.34 Aligned_cols=158 Identities=19% Similarity=0.079 Sum_probs=113.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccc--------cceEEEeecCccc-------ccCCCCc-------cCCcccccc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV--------RRTMHIVNLDPAA-------ENFDYPV-------AMDIRELIS 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~--------~G~I~i~g~~~~~-------~~~~~~~-------~~~~~~~~~ 58 (175)
+||+++|+||||||||||+|+|+|+++|+ +|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~ 105 (272)
T PRK13547 26 PGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVL 105 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHh
Confidence 59999999999999999999999999998 9999999876421 1122222 112222110
Q ss_pred --------------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhh---------ccCCCCEEEEeCCCc
Q 030541 59 --------------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELD---------NYLDDDYLVFDCPGQ 109 (175)
Q Consensus 59 --------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~---------~~~~p~lliLDEP~~ 109 (175)
...+++.+++..........-+..++++..++++++ . +|++++||||..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~--~p~lllLDEPt~ 183 (272)
T PRK13547 106 LGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQ--PPRYLLLDEPTA 183 (272)
T ss_pred hcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCC--CCCEEEEcCccc
Confidence 112233333322111111112234789999999998 6 899999999977
Q ss_pred ccccccchhHHHHHHHHHhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhH
Q 030541 110 IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 110 ~~~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
..+....+.+.+++++++++ |.|| +++||+++++.++||+++++..+..+.
T Consensus 184 ~LD~~~~~~l~~~l~~~~~~~~~tv----iiisH~~~~~~~~~d~i~~l~~G~i~~ 235 (272)
T PRK13547 184 ALDLAHQHRLLDTVRRLARDWNLGV----LAIVHDPNLAARHADRIAMLADGAIVA 235 (272)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEE----EEEECCHHHHHHhCCEEEEEECCeEEE
Confidence 66677778888899998765 8999 999999999999999999998877553
No 195
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.95 E-value=2.8e-28 Score=210.24 Aligned_cols=158 Identities=14% Similarity=0.150 Sum_probs=119.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCc----------cCCcccccc----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV----------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~----------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..++|.+ .+++.+++.
T Consensus 277 ~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~ 356 (501)
T PRK10762 277 KGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTAL 356 (501)
T ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhh
Confidence 599999999999999999999999999999999999865421 1233322 112222110
Q ss_pred ------------------HHHHHHHhCCC-CCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 59 ------------------LEDVMEELGLG-PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 ------------------~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..++++.+++. .........-+..|+||..+++++.. +|++++||||+...+....+.+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l 434 (501)
T PRK10762 357 RYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMT--RPKVLILDEPTRGVDVGAKKEI 434 (501)
T ss_pred hhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCCCHhHHHHH
Confidence 12344555553 22222222223348999999999999 9999999999777777778888
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhH
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
.+++++++++|.|| +++||+++++.++||++++++.|..+.
T Consensus 435 ~~~l~~~~~~g~tv----iivtHd~~~~~~~~d~v~~l~~G~i~~ 475 (501)
T PRK10762 435 YQLINQFKAEGLSI----ILVSSEMPEVLGMSDRILVMHEGRISG 475 (501)
T ss_pred HHHHHHHHHCCCEE----EEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 88999998789999 999999999999999999999887653
No 196
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.95 E-value=2.5e-28 Score=195.43 Aligned_cols=160 Identities=13% Similarity=0.071 Sum_probs=116.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------ccCCCCc---------cCCcccccc---
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV---------AMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~---------~~~~~~~~~--- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+++.+ ..+..+++.
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~ 116 (268)
T PRK10419 37 SGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPL 116 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHH
Confidence 599999999999999999999999999999999999876421 1122221 122222210
Q ss_pred --------------HHHHHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHH
Q 030541 59 --------------LEDVMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 59 --------------~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
..++++.+++... .......-+..++++..+++++.. +|++++||||....+....+.+.+++
T Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~~~~~l 194 (268)
T PRK10419 117 RHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAV--EPKLLILDEAVSNLDLVLQAGVIRLL 194 (268)
T ss_pred HhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHHHHH
Confidence 1234444454321 111111123348999999999999 99999999996665566666788889
Q ss_pred HHHHhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 124 DHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 124 ~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++++++ +.|+ +++||+.+++.++||+++++..+..+..+
T Consensus 195 ~~~~~~~~~ti----iivsH~~~~i~~~~d~i~~l~~G~i~~~g 234 (268)
T PRK10419 195 KKLQQQFGTAC----LFITHDLRLVERFCQRVMVMDNGQIVETQ 234 (268)
T ss_pred HHHHHHcCcEE----EEEECCHHHHHHhCCEEEEEECCEEeeeC
Confidence 988654 8899 99999999999999999999988766543
No 197
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.5e-28 Score=192.43 Aligned_cols=158 Identities=17% Similarity=0.125 Sum_probs=113.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc-----ccceEEEeecCccc-------ccCCCC-------ccCCcccccc---
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-------ENFDYP-------VAMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~-------~~~~~~-------~~~~~~~~~~--- 58 (175)
+||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. ..+++. +..++.+++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~ 107 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGL 107 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHH
Confidence 5999999999999999999999999974 79999999876421 122222 2223332221
Q ss_pred ---------------HHHHHHHhCCCCCC--chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 59 ---------------LEDVMEELGLGPNG--GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~~~--~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..+.++.+++.... .......++ +++||..+++++.. +|++++||||....+....+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~lllLDEP~~~LD~~~~~~l 185 (250)
T PRK14247 108 KLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAF--QPEVLLADEPTANLDPENTAKI 185 (250)
T ss_pred HhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHH
Confidence 11233334442110 011112233 48899999999999 9999999999666667777788
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
.++++++++ +.|+ +++||+++++.++||+++++..|..+.+
T Consensus 186 ~~~l~~~~~-~~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14247 186 ESLFLELKK-DMTI----VLVTHFPQQAARISDYVAFLYKGQIVEW 226 (250)
T ss_pred HHHHHHHhc-CCEE----EEEeCCHHHHHHhcCEEEEEECCeEEEE
Confidence 889998854 7899 9999999999999999999988876543
No 198
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.95 E-value=3.3e-28 Score=188.73 Aligned_cols=159 Identities=8% Similarity=-0.129 Sum_probs=106.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEE-EeecCcc-cccCCCCccCCccccccH---------HH----HHHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-IVNLDPA-AENFDYPVAMDIRELISL---------ED----VMEE 65 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~-i~g~~~~-~~~~~~~~~~~~~~~~~~---------~~----~~~~ 65 (175)
+|++++|+||||||||||+|+|+|+.+|++|+|. ++|.... .....+.+.+++.+++.. .+ +.+.
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~ 91 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFCYQL 91 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4999999999999999999999999999999997 6665321 112223333444444321 00 1111
Q ss_pred hCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchh
Q 030541 66 LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCI 145 (175)
Q Consensus 66 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~ 145 (175)
.++...........+..+++|..++++++. +|++++||||....+......+.+.+.+..+ +.|+ +++||+++
T Consensus 92 ~~l~~~~~~~~~~lS~G~~qrv~la~al~~--~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~~~i----i~vsH~~~ 164 (213)
T PRK15177 92 TQLEQCYTDRVSEYSVTMKTHLAFAINLLL--PCRLYIADGKLYTGDNATQLRMQAALACQLQ-QKGL----IVLTHNPR 164 (213)
T ss_pred hChhHHhhchHhhcCHHHHHHHHHHHHHhc--CCCEEEECCCCccCCHHHHHHHHHHHHHHhh-CCcE----EEEECCHH
Confidence 222221111111223348899999999999 9999999999333344444555555544322 4678 89999999
Q ss_pred hhhcCCcceeEeccchhhHHh
Q 030541 146 RFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++.++||+++++..|..+...
T Consensus 165 ~~~~~~d~i~~l~~G~i~~~~ 185 (213)
T PRK15177 165 LIKEHCHAFGVLLHGKITMCE 185 (213)
T ss_pred HHHHhcCeeEEEECCeEEEeC
Confidence 999999999999988766443
No 199
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.2e-28 Score=201.09 Aligned_cols=161 Identities=17% Similarity=0.195 Sum_probs=117.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc----cccceEEEeecCccc-----------ccCCCCc---------cCCcccc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE----TVRRTMHIVNLDPAA-----------ENFDYPV---------AMDIREL 56 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~----~~~G~I~i~g~~~~~-----------~~~~~~~---------~~~~~~~ 56 (175)
+||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++.. ..+++.+ .+++.++
T Consensus 32 ~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~ 111 (330)
T PRK15093 32 EGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQ 111 (330)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHH
Confidence 599999999999999999999999986 589999999976421 1233222 1111111
Q ss_pred c----------------------cHHHHHHHhCCCCCCc-hhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCccc
Q 030541 57 I----------------------SLEDVMEELGLGPNGG-LIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIE 111 (175)
Q Consensus 57 ~----------------------~~~~~~~~~~l~~~~~-~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~ 111 (175)
+ ...++++.+++..... ......++ .|+||..++++++. +|+++|+|||+...
T Consensus 112 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~--~P~llilDEPts~L 189 (330)
T PRK15093 112 LMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALAN--QPRLLIADEPTNAM 189 (330)
T ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHC--CCCEEEEeCCCCcC
Confidence 1 0123445555543110 01111233 48999999999999 99999999996665
Q ss_pred ccccchhHHHHHHHHHhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 112 LFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 112 ~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+...+..+.++|++++++ |.|+ +++||+++++.++||++++|..|..+-+++
T Consensus 190 D~~~~~~i~~lL~~l~~~~g~ti----i~itHdl~~v~~~~dri~vm~~G~ive~g~ 242 (330)
T PRK15093 190 EPTTQAQIFRLLTRLNQNNNTTI----LLISHDLQMLSQWADKINVLYCGQTVETAP 242 (330)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEE----EEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 566677888899998764 8999 999999999999999999999988765543
No 200
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.95 E-value=1.9e-28 Score=193.49 Aligned_cols=162 Identities=13% Similarity=0.114 Sum_probs=114.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccC--ccccceEEEeecCccc--------ccCCCCccC-------Ccccc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA--------ENFDYPVAM-------DIREL------- 56 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~--~~~~G~I~i~g~~~~~--------~~~~~~~~~-------~~~~~------- 56 (175)
+|++++|+||||||||||+++|+|+. +|++|+|.++|.++.. ..+++.+.. +...+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~ 105 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNA 105 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhh
Confidence 59999999999999999999999995 6999999999976421 112222110 00000
Q ss_pred ---------cc-------HHHHHHHhCCCCC-Cchhhh-HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchh
Q 030541 57 ---------IS-------LEDVMEELGLGPN-GGLIYC-MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 57 ---------~~-------~~~~~~~~~l~~~-~~~~~~-~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
+. ..+.++.+++... ...... .-+..++++..+++++.. +|++++||||....+....+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~illLDEPt~~LD~~~~~~ 183 (248)
T PRK09580 106 VRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL--EPELCILDESDSGLDIDALKI 183 (248)
T ss_pred hhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHH
Confidence 00 0122223333211 000010 123348999999999999 999999999966666677778
Q ss_pred HHHHHHHHHhCCCcEEEEeeeehhchhhhhcC-CcceeEeccchhhHHhhh
Q 030541 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTL-PPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~-~~~~~~~~~~~~~~~~~~ 168 (175)
+.++++++++++.|| +++||+++.+... +++++++..+..+..+++
T Consensus 184 l~~~l~~l~~~~~ti----ii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~ 230 (248)
T PRK09580 184 VADGVNSLRDGKRSF----IIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230 (248)
T ss_pred HHHHHHHHHhCCCEE----EEEeCCHHHHHhhhCCEEEEEECCeEEEeCCH
Confidence 888898887778999 9999999999887 899999988877655544
No 201
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.5e-28 Score=194.25 Aligned_cols=158 Identities=17% Similarity=0.213 Sum_probs=114.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc-----ccceEEEeecCccc---------ccCCCCcc------CCccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.. +.++|.+. .++.+++..
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 116 (258)
T PRK14268 37 KNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYG 116 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCcccHHHHHHHH
Confidence 5999999999999999999999999975 79999999876421 12233221 122222211
Q ss_pred ---------------HHHHHHhCCCCC--CchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHH
Q 030541 60 ---------------EDVMEELGLGPN--GGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120 (175)
Q Consensus 60 ---------------~~~~~~~~l~~~--~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~ 120 (175)
..+++.+++... .........+ .++||..++++++. +|++++||||....+....+.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~ 194 (258)
T PRK14268 117 PRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAV--KPKIILFDEPTSALDPISTARIE 194 (258)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcccCHHHHHHHH
Confidence 123333333210 0011112233 48899999999999 99999999997766677777888
Q ss_pred HHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 121 NFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 121 ~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
++++++++ +.|| +++||+++++.++||+++++..|..+..
T Consensus 195 ~~l~~l~~-~~ti----iivsH~~~~~~~~~d~i~~l~~G~i~~~ 234 (258)
T PRK14268 195 DLIMNLKK-DYTI----VIVTHNMQQAARISDYTGFFLMGELIEF 234 (258)
T ss_pred HHHHHHhh-CCEE----EEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 89998864 7899 9999999999999999999998876544
No 202
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.1e-28 Score=194.04 Aligned_cols=159 Identities=14% Similarity=0.142 Sum_probs=112.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc-----cccceEEEeecCccc---------ccCCCCcc------CCccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++.. ..++|.+. .++.+++..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 110 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYG 110 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHH
Confidence 599999999999999999999999964 589999999976421 12333321 122222211
Q ss_pred ----------------HHHHHHhCCCCC----CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 60 ----------------EDVMEELGLGPN----GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.+.++.+++... .......-+..++||..+++++.. +|++++||||....+....+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l 188 (253)
T PRK14242 111 LRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAV--EPEVLLMDEPASALDPIATQKI 188 (253)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 111222233110 000011122348899999999999 9999999999666667777788
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.++++++++ +.|| +++||+++++.++||++++++.|..+.++
T Consensus 189 ~~~l~~~~~-~~tv----ii~tH~~~~~~~~~d~v~~l~~G~i~~~g 230 (253)
T PRK14242 189 EELIHELKA-RYTI----IIVTHNMQQAARVSDVTAFFYMGKLIEVG 230 (253)
T ss_pred HHHHHHHhc-CCeE----EEEEecHHHHHHhCCEEEEEECCEEEEeC
Confidence 889999854 7899 99999999999999999999988765543
No 203
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.95 E-value=5.2e-28 Score=188.45 Aligned_cols=152 Identities=16% Similarity=0.131 Sum_probs=109.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEe--ec--Ccc-----------cccCCCCc-------cCCcccccc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV--NL--DPA-----------AENFDYPV-------AMDIRELIS 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~--g~--~~~-----------~~~~~~~~-------~~~~~~~~~ 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++ |. ++. ...+++.+ ..++.+++.
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 112 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVA 112 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHH
Confidence 599999999999999999999999999999999998 32 321 11223322 112222211
Q ss_pred ----------------HHHHHHHhCCCCCC-chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHH
Q 030541 59 ----------------LEDVMEELGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN 121 (175)
Q Consensus 59 ----------------~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~ 121 (175)
..++++.+++.... ......-+..++|+..+++++.. +|++++||||....+......+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~l~~ 190 (224)
T TIGR02324 113 EPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIA--DYPILLLDEPTASLDAANRQVVVE 190 (224)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHH
Confidence 12334445553211 11111123348899999999999 999999999976666777778888
Q ss_pred HHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEec
Q 030541 122 FVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFC 158 (175)
Q Consensus 122 ~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~ 158 (175)
.+++++++|.|| +++||+.+.+.++||+++.+.
T Consensus 191 ~l~~~~~~g~ti----i~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 191 LIAEAKARGAAL----IGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHhcCCEE----EEEeCCHHHHHHhcceeEecC
Confidence 999987778999 999999999999999887653
No 204
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.8e-28 Score=192.50 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=112.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc-----ccceEEEeecCcc--c-------ccCCCCc-------cCCcccccc-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA--A-------ENFDYPV-------AMDIRELIS- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~--~-------~~~~~~~-------~~~~~~~~~- 58 (175)
+||+++|+||||||||||+++|+|+++| ++|+|.++|.++. . ..+++.+ ..++.+++.
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 108 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAI 108 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHH
Confidence 5999999999999999999999999987 4999999987642 1 1223222 122222221
Q ss_pred -----------------HHHHHHHhCCCCC--CchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccch
Q 030541 59 -----------------LEDVMEELGLGPN--GGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVP 117 (175)
Q Consensus 59 -----------------~~~~~~~~~l~~~--~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~ 117 (175)
..++++.+++... .........+ .++||..+++++.. +|++++||||....+.....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~ 186 (253)
T PRK14267 109 GVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAM--KPKILLMDEPTANIDPVGTA 186 (253)
T ss_pred HHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHH
Confidence 0122333333211 0011112233 38899999999999 99999999996666667777
Q ss_pred hHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhH
Q 030541 118 VLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 118 ~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
.+.++|+++++ +.|| +++||+++++..+||++++++.|..+.
T Consensus 187 ~l~~~l~~~~~-~~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~~ 228 (253)
T PRK14267 187 KIEELLFELKK-EYTI----VLVTHSPAQAARVSDYVAFLYLGKLIE 228 (253)
T ss_pred HHHHHHHHHhh-CCEE----EEEECCHHHHHhhCCEEEEEECCEEEE
Confidence 88889998865 6899 999999999999999999998876553
No 205
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.95 E-value=1.8e-28 Score=201.56 Aligned_cols=161 Identities=13% Similarity=0.063 Sum_probs=117.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccc---cceEEEeecCccc-----------ccCCCCc---------cCCccccc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA-----------ENFDYPV---------AMDIRELI 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~---~G~I~i~g~~~~~-----------~~~~~~~---------~~~~~~~~ 57 (175)
+||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. ..+++.+ .++..+++
T Consensus 41 ~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i 120 (330)
T PRK09473 41 AGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQL 120 (330)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHH
Confidence 59999999999999999999999999986 9999999986421 1222222 22222211
Q ss_pred c-----------------HHHHHHHhCCCCCCch-hhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccch
Q 030541 58 S-----------------LEDVMEELGLGPNGGL-IYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVP 117 (175)
Q Consensus 58 ~-----------------~~~~~~~~~l~~~~~~-~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~ 117 (175)
. ..++++.+++...... ..... +..++||..++++++. +|+++|+|||+...+...+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~--~P~llilDEPts~LD~~~~~ 198 (330)
T PRK09473 121 MEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLC--RPKLLIADEPTTALDVTVQA 198 (330)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHH
Confidence 0 1234445555321100 11112 3348999999999999 99999999996665566666
Q ss_pred hHHHHHHHHHhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 118 VLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 118 ~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.+.++|++++++ |.|+ +++||++..+.+++|++++|..|..+-.++
T Consensus 199 ~i~~lL~~l~~~~g~ti----l~iTHdl~~~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 199 QIMTLLNELKREFNTAI----IMITHDLGVVAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred HHHHHHHHHHHHcCCEE----EEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 777889998664 8999 999999999999999999999988776544
No 206
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.95 E-value=2.1e-28 Score=200.76 Aligned_cols=153 Identities=12% Similarity=0.051 Sum_probs=112.4
Q ss_pred EECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----ccCCC-------CccCCcccccc----------------
Q 030541 7 VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS---------------- 58 (175)
Q Consensus 7 liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~-------~~~~~~~~~~~---------------- 58 (175)
|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.+++ .+.+++.+++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 689999999999999999999999999999876421 12222 22233333322
Q ss_pred HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-CCcEEEEe
Q 030541 59 LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAVY 137 (175)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~tvli~~ 137 (175)
..++++.+++..........-+..++||..++++++. +|++++||||....+...+..+.+.+++++++ |.|+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~--~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~ti---- 154 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVF--KPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITF---- 154 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEE----
Confidence 1234444555432222221223348999999999999 99999999996666666777888889888654 8999
Q ss_pred eeehhchhhhhcCCcceeEeccchhhHH
Q 030541 138 LLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 138 l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+++||+++++..+||++++|..|..+..
T Consensus 155 iivTHd~~e~~~~~d~i~vl~~G~i~~~ 182 (325)
T TIGR01187 155 VFVTHDQEEAMTMSDRIAIMRKGKIAQI 182 (325)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999998876543
No 207
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.4e-28 Score=209.24 Aligned_cols=159 Identities=12% Similarity=0.093 Sum_probs=118.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc-cccceEEEeecCccc--------ccCCCCc----------cCCcccccc---
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAA--------ENFDYPV----------AMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-~~~G~I~i~g~~~~~--------~~~~~~~----------~~~~~~~~~--- 58 (175)
+||+++|+||||||||||+|+|+|+++ |++|+|.++|.++.. ..++|.+ .+++.+++.
T Consensus 287 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~ 366 (506)
T PRK13549 287 RGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAA 366 (506)
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhh
Confidence 599999999999999999999999998 599999999865421 1122222 122222111
Q ss_pred ------------------HHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 59 ------------------LEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 ------------------~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..++++.+++.. ........-+..++||..+++++.. +|++++||||+...+......+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l 444 (506)
T PRK13549 367 LDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLL--NPKILILDEPTRGIDVGAKYEI 444 (506)
T ss_pred hhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCcCHhHHHHH
Confidence 123445555531 2112222223348999999999999 9999999999777777777888
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
.+++++++++|.|| +++||+++++.++||+++++..|..+..
T Consensus 445 ~~~l~~l~~~g~tv----i~~sHd~~~~~~~~d~v~~l~~G~i~~~ 486 (506)
T PRK13549 445 YKLINQLVQQGVAI----IVISSELPEVLGLSDRVLVMHEGKLKGD 486 (506)
T ss_pred HHHHHHHHHCCCEE----EEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 88999998789999 9999999999999999999998876543
No 208
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.95 E-value=5.6e-28 Score=208.27 Aligned_cols=157 Identities=12% Similarity=0.091 Sum_probs=117.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc-ccceEEEeecCccc--------ccCCCCc----------cCCcccccc---
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAA--------ENFDYPV----------AMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-~~G~I~i~g~~~~~--------~~~~~~~----------~~~~~~~~~--- 58 (175)
+||+++|+||||||||||+|+|+|+.+| ++|+|.++|+++.. ..+++.+ .+++.+++.
T Consensus 285 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~ 364 (500)
T TIGR02633 285 RGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSV 364 (500)
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchh
Confidence 5999999999999999999999999985 89999999865421 1122221 111111110
Q ss_pred ------------------HHHHHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 59 ------------------LEDVMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 ------------------~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..++++.+++... .......-+..|+||..+++++.. +|++++||||+...+...+..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l 442 (500)
T TIGR02633 365 LKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLT--NPRVLILDEPTRGVDVGAKYEI 442 (500)
T ss_pred hhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCcCHhHHHHH
Confidence 1234555666421 112222223448999999999999 9999999999777777778888
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
.+++++++++|.|| +++||+++++.++||+++++..+..+
T Consensus 443 ~~~l~~l~~~g~tv----iivsHd~~~~~~~~d~v~~l~~G~i~ 482 (500)
T TIGR02633 443 YKLINQLAQEGVAI----IVVSSELAEVLGLSDRVLVIGEGKLK 482 (500)
T ss_pred HHHHHHHHhCCCEE----EEECCCHHHHHHhCCEEEEEECCEEE
Confidence 88999998889999 99999999999999999999877654
No 209
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.1e-28 Score=191.04 Aligned_cols=156 Identities=13% Similarity=0.099 Sum_probs=111.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCccCCccccccHHHHHHHhCCCCCC-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNG- 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 72 (175)
+|++++|+||||||||||+++|+|+.+|++|+|.++|.++.. +.++|.+ +....+. .++.+++.+....
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~--q~~~~~~-~tv~~nl~~~~~~~ 102 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVP--QDTVLFN-DTIGYNIRYGRPDA 102 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEEC--CCChhhc-chHHHHHhhcCCCC
Confidence 599999999999999999999999999999999999876431 1223332 1111121 2333333221100
Q ss_pred -----------------------------chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHH
Q 030541 73 -----------------------------GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 73 -----------------------------~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
......-+..++++..++++++. +|++++||||....+....+.+.+++
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~--~p~llllDEP~~~LD~~~~~~l~~~l 180 (236)
T cd03253 103 TDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK--NPPILLLDEATSALDTHTEREIQAAL 180 (236)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 00000112248899999999999 99999999996666666677788888
Q ss_pred HHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++++ |.|| +++||+.+++.. |++++++..+..+.+++
T Consensus 181 ~~~~~-~~ti----ii~sh~~~~~~~-~d~~~~l~~g~i~~~~~ 218 (236)
T cd03253 181 RDVSK-GRTT----IVIAHRLSTIVN-ADKIIVLKDGRIVERGT 218 (236)
T ss_pred HHhcC-CCEE----EEEcCCHHHHHh-CCEEEEEECCEEEeeCC
Confidence 88866 8899 999999999976 99999999887665433
No 210
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=8.6e-28 Score=184.50 Aligned_cols=146 Identities=11% Similarity=0.036 Sum_probs=105.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc------ccCCCC-------ccCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYP-------VAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~-------~~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|+++|.++.. +.+++. +..++.+++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~ 105 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGA 105 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcch
Confidence 599999999999999999999999999999999999976431 122222 2233333322
Q ss_pred --HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEE
Q 030541 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (175)
Q Consensus 59 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~ 136 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.+++++++++|.|+
T Consensus 106 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~--~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~ti--- 180 (200)
T PRK13540 106 VGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMS--KAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV--- 180 (200)
T ss_pred HHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEE---
Confidence 2334444454322111111123348899999999999 999999999977766777788888999987778999
Q ss_pred eeeehhchhhhhcCCcc
Q 030541 137 YLLDSQVCIRFRTLPPC 153 (175)
Q Consensus 137 ~l~~sH~~~~~~~~~~~ 153 (175)
+++||+.+.+.+ +|.
T Consensus 181 -ii~sh~~~~~~~-~d~ 195 (200)
T PRK13540 181 -LLTSHQDLPLNK-ADY 195 (200)
T ss_pred -EEEeCCchhccc-cch
Confidence 999999877744 663
No 211
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=7.6e-28 Score=184.13 Aligned_cols=147 Identities=13% Similarity=0.026 Sum_probs=104.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc---ccCC-------CCccCCcccccc-----------H
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFD-------YPVAMDIRELIS-----------L 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---~~~~-------~~~~~~~~~~~~-----------~ 59 (175)
+||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.. ...+ +.+..++.+++. .
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~ 104 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETL 104 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcccHHHH
Confidence 599999999999999999999999999999999999976432 1111 222233333332 1
Q ss_pred HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeee
Q 030541 60 EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLL 139 (175)
Q Consensus 60 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~ 139 (175)
..+++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.+++++..+++.|+ ++
T Consensus 105 ~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~--~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~ti----ii 178 (195)
T PRK13541 105 YAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIAC--QSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIV----LL 178 (195)
T ss_pred HHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEE----EE
Confidence 223344444322211111223348899999999999 999999999966666666777888887766678999 99
Q ss_pred ehhchhhhhcCCcce
Q 030541 140 DSQVCIRFRTLPPCI 154 (175)
Q Consensus 140 ~sH~~~~~~~~~~~~ 154 (175)
+||+.+++.+ ++.+
T Consensus 179 ~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 179 SSHLESSIKS-AQIL 192 (195)
T ss_pred EeCCccccch-hhee
Confidence 9999988765 5543
No 212
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=8.8e-28 Score=191.06 Aligned_cols=155 Identities=17% Similarity=0.123 Sum_probs=112.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEE-----------EeecCcccc---------cCCCCccC---Cc----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAAE---------NFDYPVAM---DI---- 53 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~-----------i~g~~~~~~---------~~~~~~~~---~~---- 53 (175)
+||+++|+||||||||||+|+|+|+++|++|+|. ++|.+.... .+.+.+.. ..
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 104 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVK 104 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCchHHH
Confidence 5999999999999999999999999999999996 667654210 11111110 00
Q ss_pred ---cccc-------cHHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHH
Q 030541 54 ---RELI-------SLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 54 ---~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
.+++ ...++++.+++..........-+..++++..++++++. +|++++||||+...+......+.+++
T Consensus 105 ~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~--~p~illlDEPts~LD~~~~~~l~~~l 182 (255)
T cd03236 105 GKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALAR--DADFYFFDEPSSYLDIKQRLNAARLI 182 (255)
T ss_pred HHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 0000 12345555665432222222223348899999999999 99999999996666666667777899
Q ss_pred HHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccch
Q 030541 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
+++++++.|| +++||+++++.++||+++++.+..
T Consensus 183 ~~l~~~~~tI----IiiSHd~~~~~~~ad~i~~l~~~~ 216 (255)
T cd03236 183 RELAEDDNYV----LVVEHDLAVLDYLSDYIHCLYGEP 216 (255)
T ss_pred HHHHhcCCEE----EEEECCHHHHHHhCCEEEEECCCC
Confidence 9987778999 999999999999999999998754
No 213
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.95 E-value=5.6e-28 Score=191.38 Aligned_cols=162 Identities=10% Similarity=0.117 Sum_probs=116.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhcc--CccccceEEEeecCccc------c--cCCCCc-------cCCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA------E--NFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl--~~~~~G~I~i~g~~~~~------~--~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++.. . .+.+.+ ..+..+++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~ 111 (252)
T CHL00131 32 KGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNS 111 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhh
Confidence 5999999999999999999999998 57999999999876421 0 111111 011111100
Q ss_pred ------------------HHHHHHHhCCCC-CCchhhh-HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchh
Q 030541 59 ------------------LEDVMEELGLGP-NGGLIYC-MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 59 ------------------~~~~~~~~~l~~-~~~~~~~-~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
..++++.+++.. ....... .-+.++++|..+++++.. +|++++||||....+....+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~ 189 (252)
T CHL00131 112 KRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALL--DSELAILDETDSGLDIDALKI 189 (252)
T ss_pred hhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHH
Confidence 122344444431 1111111 123448999999999999 999999999966666667778
Q ss_pred HHHHHHHHHhCCCcEEEEeeeehhchhhhhcC-CcceeEeccchhhHHhhh
Q 030541 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTL-PPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~-~~~~~~~~~~~~~~~~~~ 168 (175)
+.+++++++++|.|| +++||+++++... +|+++++..|..+..++.
T Consensus 190 l~~~l~~~~~~g~ti----i~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~ 236 (252)
T CHL00131 190 IAEGINKLMTSENSI----ILITHYQRLLDYIKPDYVHVMQNGKIIKTGDA 236 (252)
T ss_pred HHHHHHHHHhCCCEE----EEEecCHHHHHhhhCCEEEEEeCCEEEEecCh
Confidence 888999987778999 9999999999887 899999998887665544
No 214
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.95 E-value=8e-28 Score=207.29 Aligned_cols=159 Identities=16% Similarity=0.092 Sum_probs=118.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc--ccceEEEeecCccc--------ccCCCCc-------cCCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~--~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+.+| ++|+|.++|.++.. ..++|.+ .+++.+++.
T Consensus 26 ~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 105 (500)
T TIGR02633 26 PGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEI 105 (500)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccc
Confidence 5999999999999999999999999987 79999999865421 1222222 112211110
Q ss_pred ---------------HHHHHHHhCCCCCC-chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHH
Q 030541 59 ---------------LEDVMEELGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..++++.+++.... ......-+..|+||..+++++.. +|++++||||+...+......+.++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~--~p~lllLDEPt~~LD~~~~~~l~~~ 183 (500)
T TIGR02633 106 TLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK--QARLLILDEPSSSLTEKETEILLDI 183 (500)
T ss_pred cccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 12345555554321 11122223348999999999999 9999999999777777778888889
Q ss_pred HHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 123 VDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
|++++++|.|| +++||+++++.++||+++++..+..+..
T Consensus 184 l~~l~~~g~tv----iiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 184 IRDLKAHGVAC----VYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred HHHHHhCCCEE----EEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 99998789999 9999999999999999999998876543
No 215
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.95 E-value=6.1e-28 Score=188.32 Aligned_cols=153 Identities=14% Similarity=0.090 Sum_probs=107.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCccC------Ccccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAM------DIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~------~~~~~~~--------- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+++.+.. ++.+++.
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~ 118 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFE 118 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHH
Confidence 599999999999999999999999999999999999976421 122332210 1111111
Q ss_pred ----------HHHHHHHh--CCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ----------LEDVMEEL--GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ----------~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..+.++.+ ++..........-+..++++..+++++.. +|++++||||....+....+.+.++++++
T Consensus 119 ~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~ 196 (226)
T cd03248 119 CVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR--NPQVLILDEATSALDAESEQQVQQALYDW 196 (226)
T ss_pred HHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 01112222 12111111111112338899999999999 99999999996666666777888889888
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccch
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
++ +.|+ +++||+++++.. ||+++.+..+.
T Consensus 197 ~~-~~ti----i~~sh~~~~~~~-~d~i~~l~~g~ 225 (226)
T cd03248 197 PE-RRTV----LVIAHRLSTVER-ADQILVLDGGR 225 (226)
T ss_pred cC-CCEE----EEEECCHHHHHh-CCEEEEecCCc
Confidence 65 5888 999999999965 99999998763
No 216
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4e-28 Score=192.59 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=113.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc-----ccceEEEeecCccc---------ccCCCCcc------CCccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+|+||||||||+|+|+|+++| ++|+|.++|.++.. ..++|.+. .++.+++..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~ 111 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYG 111 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHHHHHHHH
Confidence 5999999999999999999999999987 48999999876421 12233221 122222210
Q ss_pred ----------------HHHHHHhCCCCC--CchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 60 ----------------EDVMEELGLGPN--GGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~--~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.+.++.+++... .........+ .++|+..+++++.. +|+++|||||....+......+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l 189 (254)
T PRK14273 112 PKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAI--EPNVILMDEPTSALDPISTGKI 189 (254)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcccCHHHHHHH
Confidence 111122222100 0001111222 38899999999999 9999999999776667777788
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.++++++++ +.|| +++||+++++.+++|+++++..+..+.++.
T Consensus 190 ~~~l~~~~~-~~tv----ii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 232 (254)
T PRK14273 190 EELIINLKE-SYTI----IIVTHNMQQAGRISDRTAFFLNGCIEEESS 232 (254)
T ss_pred HHHHHHHhc-CCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 889999864 7899 999999999999999999998888765443
No 217
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.5e-28 Score=194.01 Aligned_cols=149 Identities=16% Similarity=0.188 Sum_probs=107.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc-----cccceEEEeecCccc---------ccCCCCccCCccccccHHHHHHHh
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVAMDIRELISLEDVMEEL 66 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 66 (175)
+||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. +.++|.+ +....+. .++.+++
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~--q~~~l~~-~tv~enl 114 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVF--QQPNPFP-KSIYENI 114 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEc--cCCccch-hhHHHHH
Confidence 599999999999999999999999987 689999999876421 1233333 1111121 1222222
Q ss_pred ------------------------CCCCC--CchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchh
Q 030541 67 ------------------------GLGPN--GGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 67 ------------------------~l~~~--~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
++... .........+ .++++..+++++.. +|++++||||....+......
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEPt~gLD~~~~~~ 192 (269)
T PRK14259 115 AFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAI--EPEVILMDEPCSALDPISTLK 192 (269)
T ss_pred hhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHH
Confidence 22110 0000111223 38899999999999 999999999966666667778
Q ss_pred HHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEecc
Q 030541 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
+.++++++++ +.|| +++||+++++.++||++++|..
T Consensus 193 l~~~l~~~~~-~~ti----iivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 193 IEETMHELKK-NFTI----VIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHHHHHhc-CCEE----EEEeCCHHHHHHhcCEEEEEec
Confidence 8889988854 6889 9999999999999999999985
No 218
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=7.1e-28 Score=190.39 Aligned_cols=159 Identities=17% Similarity=0.164 Sum_probs=114.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc---cccceEEEeecCccc-------ccCCCCcc------CCcccccc------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA-------ENFDYPVA------MDIRELIS------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~---~~~G~I~i~g~~~~~-------~~~~~~~~------~~~~~~~~------ 58 (175)
+||+++|+||||||||||+|+|+|+++ |++|+|.++|.++.. ..++|.+. .++.+++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~ 106 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLH 106 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhhhHHhhc
Confidence 499999999999999999999999974 689999999976432 12222221 12222221
Q ss_pred ------------HHHHHHHhCCCCCC----chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHH
Q 030541 59 ------------LEDVMEELGLGPNG----GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..++++.+++.... ......-+..++|+..+++++.. +|++++||||....+...+..+.+.
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEP~~~LD~~~~~~l~~~ 184 (246)
T PRK14269 107 GMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAI--KPKLLLLDEPTSALDPISSGVIEEL 184 (246)
T ss_pred CcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHH
Confidence 11234444442110 00111112348899999999999 9999999999666666677788888
Q ss_pred HHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 123 VDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++++++ +.|+ +++||+++++.+++|+++++..|..+.++
T Consensus 185 l~~~~~-~~ti----ii~tH~~~~~~~~~d~i~~l~~G~i~~~g 223 (246)
T PRK14269 185 LKELSH-NLSM----IMVTHNMQQGKRVADYTAFFHLGELIEFG 223 (246)
T ss_pred HHHHhC-CCEE----EEEecCHHHHHhhCcEEEEEECCEEEEEC
Confidence 888864 8899 99999999999999999999988876543
No 219
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.95 E-value=7.4e-28 Score=176.20 Aligned_cols=119 Identities=17% Similarity=0.097 Sum_probs=98.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|. ..+++.+ + -+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----~~i~~~~--~--------------------------lS 72 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----VKIGYFE--Q--------------------------LS 72 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----EEEEEEc--c--------------------------CC
Confidence 59999999999999999999999999999999999874 1233333 1 22
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccc
Q 030541 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
..++++..+++++.. +|+++++|||....+....+.+.+.++++ +.|+ +++||+.+++..+||+++.+..+
T Consensus 73 ~G~~~rv~laral~~--~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~ti----l~~th~~~~~~~~~d~v~~l~~g 143 (144)
T cd03221 73 GGEKMRLALAKLLLE--NPNLLLLDEPTNHLDLESIEALEEALKEY---PGTV----ILVSHDRYFLDQVATKIIELEDG 143 (144)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEE----EEEECCHHHHHHhCCEEEEEeCC
Confidence 357888999999999 99999999996555566666676777665 4688 99999999999999999998765
No 220
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.95 E-value=1.1e-27 Score=183.51 Aligned_cols=142 Identities=20% Similarity=0.129 Sum_probs=101.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc------ccCCCCc-------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYPV-------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~~-------~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++|.+ ..++.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 104 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGA 104 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcCCc
Confidence 599999999999999999999999999999999999876421 1122222 123322221
Q ss_pred ---HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEE
Q 030541 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCA 135 (175)
Q Consensus 59 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli 135 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.+++++++++|.|+
T Consensus 105 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti-- 180 (198)
T TIGR01189 105 QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLS--RAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIV-- 180 (198)
T ss_pred HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEE--
Confidence 1233444454332211111123348899999999999 999999999966666777788888999987778999
Q ss_pred Eeeeehhchhhhh
Q 030541 136 VYLLDSQVCIRFR 148 (175)
Q Consensus 136 ~~l~~sH~~~~~~ 148 (175)
+++||+..++.
T Consensus 181 --i~~sH~~~~~~ 191 (198)
T TIGR01189 181 --LLTTHQDLGLV 191 (198)
T ss_pred --EEEEccccccc
Confidence 99999886553
No 221
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.2e-28 Score=193.70 Aligned_cols=160 Identities=14% Similarity=0.153 Sum_probs=113.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc-----ccceEEEeecCccc---------ccCCCCcc------CCccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.. ..+++.+. .++.+++..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~ 108 (251)
T PRK14270 29 ENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYG 108 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCCcHHHHHHhH
Confidence 5999999999999999999999999875 79999999876521 12232221 222222211
Q ss_pred ----------------HHHHHHhCCCCC--CchhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 60 ----------------EDVMEELGLGPN--GGLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~--~~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.++++.+++... ........ +..++++..++++++. +|++++||||....+...+..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l 186 (251)
T PRK14270 109 PRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAV--KPDVILMDEPTSALDPISTLKI 186 (251)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 112233332110 00011112 2338899999999999 9999999999666666777788
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.++|+++++ +.|| +++||+++++.++|++++++..|..+.+.+
T Consensus 187 ~~~L~~~~~-~~ti----iivsH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (251)
T PRK14270 187 EDLMVELKK-EYTI----VIVTHNMQQASRVSDYTAFFLMGDLIEFNK 229 (251)
T ss_pred HHHHHHHHh-CCeE----EEEEcCHHHHHHhcCEEEEEECCeEEEeCC
Confidence 889998866 5889 999999999999999999999988765433
No 222
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.1e-28 Score=193.92 Aligned_cols=158 Identities=15% Similarity=0.128 Sum_probs=111.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc-----cccceEEEeecCccc---------ccCCCCcc------CCcccccc--
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVA------MDIRELIS-- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~-- 58 (175)
+||+++|+||||||||||+|+|+|+.+ |++|+|.++|.++.. +.+++.+. .++.+++.
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~ 117 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFG 117 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHHHHHhhh
Confidence 599999999999999999999999986 589999999876421 12222221 12222211
Q ss_pred ---------------HHHHHHHhCCCCC--CchhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 59 ---------------LEDVMEELGLGPN--GGLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~~--~~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..++++.+++... ........ +..++||..++++++. +|++++||||....+....+.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l 195 (260)
T PRK10744 118 VRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAI--RPEVLLLDEPCSALDPISTGRI 195 (260)
T ss_pred HhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHC--CCCEEEEcCCCccCCHHHHHHH
Confidence 0122233333110 00001111 2348899999999999 9999999999666666667778
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
.++++++++ +.|| +++||+++++..++|+++++..|..+..
T Consensus 196 ~~~L~~~~~-~~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 196 EELITELKQ-DYTV----VIVTHNMQQAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHHHHHhc-CCeE----EEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 889988854 6888 9999999999999999999998876543
No 223
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.5e-28 Score=213.73 Aligned_cols=160 Identities=15% Similarity=0.096 Sum_probs=118.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------ccCCCCc---------cCCcccccc---
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV---------AMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~---------~~~~~~~~~--- 58 (175)
+||+++|+|+||||||||+|+|+|+.+|++|+|.++|.++.. ..+++.+ .+++.+++.
T Consensus 349 ~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~ 428 (623)
T PRK10261 349 PGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPL 428 (623)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHH
Confidence 599999999999999999999999999999999999875421 1223222 222222211
Q ss_pred --------------HHHHHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHH
Q 030541 59 --------------LEDVMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 59 --------------~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
..++++.+++... .......-+..|+||..++++++. +|++||||||+...+......+.++|
T Consensus 429 ~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~--~p~llllDEPts~LD~~~~~~i~~ll 506 (623)
T PRK10261 429 RVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALAL--NPKVIIADEAVSALDVSIRGQIINLL 506 (623)
T ss_pred HHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 1234444555311 111111123348999999999999 99999999996666677777888899
Q ss_pred HHHHhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 124 DHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 124 ~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++++++ |.|| +++||+++++.++||++++|..|..+.+.
T Consensus 507 ~~l~~~~g~tv----i~isHdl~~v~~~~dri~vl~~G~iv~~g 546 (623)
T PRK10261 507 LDLQRDFGIAY----LFISHDMAVVERISHRVAVMYLGQIVEIG 546 (623)
T ss_pred HHHHHhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEec
Confidence 998764 8999 99999999999999999999988776543
No 224
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=9.7e-28 Score=184.97 Aligned_cols=153 Identities=16% Similarity=0.054 Sum_probs=110.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCccCCccccccHHHHHHHhCCCCCC-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNG- 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 72 (175)
+||+++|+|+||||||||+|+|+|+.+|++|+|.++|.+... ..+++.+ +....+. .++.+++.+....
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~--q~~~~~~-~tv~~~l~~~~~~~ 109 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIP--QDPTLFS-GTIRSNLDPFDEYS 109 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEe--cCCcccC-ccHHHHhcccCCCC
Confidence 599999999999999999999999999999999999876421 2233333 2112222 2344443221100
Q ss_pred ----------chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehh
Q 030541 73 ----------GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (175)
Q Consensus 73 ----------~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH 142 (175)
......-+..+++|..+++++.. +|++++||||....+....+.+.++++++. +|.|+ +++||
T Consensus 110 ~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~ti----ii~th 182 (207)
T cd03369 110 DEEIYGALRVSEGGLNLSQGQRQLLCLARALLK--RPRVLVLDEATASIDYATDALIQKTIREEF-TNSTI----LTIAH 182 (207)
T ss_pred HHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEE----EEEeC
Confidence 00011112237899999999999 999999999966655666777888888874 48899 99999
Q ss_pred chhhhhcCCcceeEeccchhhH
Q 030541 143 VCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
+++++.. +|+++++..+..+.
T Consensus 183 ~~~~~~~-~d~v~~l~~g~i~~ 203 (207)
T cd03369 183 RLRTIID-YDKILVMDAGEVKE 203 (207)
T ss_pred CHHHHhh-CCEEEEEECCEEEe
Confidence 9999976 89999999887654
No 225
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.9e-28 Score=192.71 Aligned_cols=160 Identities=17% Similarity=0.174 Sum_probs=114.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc-----ccceEEEeecCccc---------ccCCCCcc------CCccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+|+|+|+++| ++|+|.++|.++.. ..+++.+. .++.+++..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 123 (267)
T PRK14235 44 EKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYG 123 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCCcHHHHHHHH
Confidence 5999999999999999999999999974 89999999976421 12222221 122222110
Q ss_pred -----------------HHHHHHhCCCCCC--chhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchh
Q 030541 60 -----------------EDVMEELGLGPNG--GLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 60 -----------------~~~~~~~~l~~~~--~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
..+++.+++.... ....... +.+++||..+++++.. +|++++||||....+......
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~ 201 (267)
T PRK14235 124 PRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAV--SPEVILMDEPCSALDPIATAK 201 (267)
T ss_pred HHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHH
Confidence 1223333332100 0001112 2348899999999999 999999999966666777778
Q ss_pred HHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+.++|+++++ +.|| +++||+++++..+||++++++.+..+.+++
T Consensus 202 l~~~L~~l~~-~~ti----iivtH~~~~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 202 VEELIDELRQ-NYTI----VIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHhc-CCeE----EEEEcCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 8889998865 6899 999999999999999999999887765543
No 226
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.95 E-value=1.2e-27 Score=178.95 Aligned_cols=139 Identities=14% Similarity=0.044 Sum_probs=103.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (175)
+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|.+ +....+ ..++.+++.+.. ...-+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----~~i~~~~--q~~~~~-~~tv~~nl~~~~-----~~~LS 93 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----EDLLFLP--QRPYLP-LGTLREQLIYPW-----DDVLS 93 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----ceEEEEC--CCCccc-cccHHHHhhccC-----CCCCC
Confidence 59999999999999999999999999999999999874 2233333 111112 235666665421 11123
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccc
Q 030541 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
..+++|..++++++. +|++++||||....+....+.+.++++++ +.|+ +++||+.+.. .+||+++.+..+
T Consensus 94 ~G~~~rv~laral~~--~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~ti----iivsh~~~~~-~~~d~i~~l~~~ 163 (166)
T cd03223 94 GGEQQRLAFARLLLH--KPKFVFLDEATSALDEESEDRLYQLLKEL---GITV----ISVGHRPSLW-KFHDRVLDLDGE 163 (166)
T ss_pred HHHHHHHHHHHHHHc--CCCEEEEECCccccCHHHHHHHHHHHHHh---CCEE----EEEeCChhHH-hhCCEEEEEcCC
Confidence 358999999999999 99999999996555555566666667664 5789 9999998865 699999988765
Q ss_pred h
Q 030541 161 H 161 (175)
Q Consensus 161 ~ 161 (175)
-
T Consensus 164 ~ 164 (166)
T cd03223 164 G 164 (166)
T ss_pred C
Confidence 3
No 227
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.2e-27 Score=205.89 Aligned_cols=156 Identities=13% Similarity=0.119 Sum_probs=117.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCcc----------CCcccc-----c
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPVA----------MDIREL-----I 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~~----------~~~~~~-----~ 57 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..++|.+. .+..++ +
T Consensus 273 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~ 352 (491)
T PRK10982 273 KGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNI 352 (491)
T ss_pred CCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhh
Confidence 599999999999999999999999999999999999866421 11222221 111000 0
Q ss_pred ----------c-------HHHHHHHhCCCCCCchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchh
Q 030541 58 ----------S-------LEDVMEELGLGPNGGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 58 ----------~-------~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
. ..++++.+++.... ......++ .|+||..++++++. +|++++||||+...+...+..
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGq~qrv~la~al~~--~p~illLDEPt~gLD~~~~~~ 429 (491)
T PRK10982 353 RNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPG-HRTQIGSLSGGNQQKVIIGRWLLT--QPEILMLDEPTRGIDVGAKFE 429 (491)
T ss_pred hhhcccccccCcHHHHHHHHHHHHhcCccCCC-cccccccCCcHHHHHHHHHHHHhc--CCCEEEEcCCCcccChhHHHH
Confidence 0 12334445553211 11222334 48999999999999 999999999977777777888
Q ss_pred HHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+.+++++++++|.|| +++||+++++.++||+++++..+..+
T Consensus 430 ~~~~l~~l~~~~~tv----i~vsHd~~~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 430 IYQLIAELAKKDKGI----IIISSEMPELLGITDRILVMSNGLVA 470 (491)
T ss_pred HHHHHHHHHHCCCEE----EEECCChHHHHhhCCEEEEEECCEEE
Confidence 888999998889999 99999999999999999999988765
No 228
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=8.9e-28 Score=190.10 Aligned_cols=159 Identities=15% Similarity=0.184 Sum_probs=112.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc-----ccceEEEeecCccc---------ccCCCCcc------CCccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. ..+++.+. .++.+++..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~ 107 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFG 107 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCcccHHHHHHHH
Confidence 5999999999999999999999999874 89999999876421 12222221 122222210
Q ss_pred ----------------HHHHHHhCCCCCC--chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 60 ----------------EDVMEELGLGPNG--GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~~--~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
...++.+++.... ........+ .+++|..++++++. +|++++||||....+....+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~--~p~llllDEP~~~LD~~~~~~l 185 (250)
T PRK14262 108 PRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAV--EPEVILLDEPTSALDPIATQRI 185 (250)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhC--CCCEEEEeCCccccCHHHHHHH
Confidence 1112222322110 011111223 37899999999999 9999999999666667777788
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.++++++++ +.|+ +++||+++++.+++|++++++.+..+.++
T Consensus 186 ~~~l~~~~~-~~ti----li~sH~~~~~~~~~d~i~~l~~G~i~~~g 227 (250)
T PRK14262 186 EKLLEELSE-NYTI----VIVTHNIGQAIRIADYIAFMYRGELIEYG 227 (250)
T ss_pred HHHHHHHhc-CcEE----EEEeCCHHHHHHhCCEEEEEECCEEEEec
Confidence 889998865 6899 99999999999999999999988776543
No 229
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.95 E-value=7.5e-28 Score=205.38 Aligned_cols=160 Identities=18% Similarity=0.173 Sum_probs=120.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCc--c----------------cccCCCCccCCcccccc----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--A----------------AENFDYPVAMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~--~----------------~~~~~~~~~~~~~~~~~---- 58 (175)
+||++||+|+||||||||.|+|+|+.+|++|+|.++|.+. . .+..++.|.+++.+.+.
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~ 395 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLR 395 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHh
Confidence 5999999999999999999999999999999999999761 0 01122333334433332
Q ss_pred -------------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHH
Q 030541 59 -------------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 59 -------------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
..++++.++++.....+. ..++| |+||..+||+++. +|+++++|||....+-.-+..+.++|
T Consensus 396 ~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ry-P~elSGGQrQRvaIARALa~--~P~lli~DEp~SaLDvsvqa~VlnLl 472 (539)
T COG1123 396 IHGGGSGAERRARVAELLELVGLPPEFLDRY-PHELSGGQRQRVAIARALAL--EPKLLILDEPVSALDVSVQAQVLNLL 472 (539)
T ss_pred hhcccchHHHHHHHHHHHHHcCCCHHHHhcC-chhcCcchhHHHHHHHHHhc--CCCEEEecCCccccCHHHHHHHHHHH
Confidence 234567777775422222 24455 9999999999999 99999999993333333344556688
Q ss_pred HHHHh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 124 DHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 124 ~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++++ .|.|. +++|||+..+..+||++++|+.|..|-.+.
T Consensus 473 ~~lq~e~g~t~----lfISHDl~vV~~i~drv~vm~~G~iVE~G~ 513 (539)
T COG1123 473 KDLQEELGLTY----LFISHDLAVVRYIADRVAVMYDGRIVEEGP 513 (539)
T ss_pred HHHHHHhCCEE----EEEeCCHHHHHhhCceEEEEECCeEEEeCC
Confidence 88865 49999 999999999999999999999998776553
No 230
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=8.9e-28 Score=190.27 Aligned_cols=159 Identities=18% Similarity=0.232 Sum_probs=113.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc-----cccceEEEeecCccc---------ccCCCCcc------CCcccccc--
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVA------MDIRELIS-- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~-- 58 (175)
+||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++.. ..++|.+. .++.+++.
T Consensus 30 ~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~ 109 (251)
T PRK14244 30 KREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYG 109 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccCCHHHHHHHH
Confidence 599999999999999999999999986 479999999876421 11222221 12222111
Q ss_pred ----------------HHHHHHHhCCCCCC--chhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchh
Q 030541 59 ----------------LEDVMEELGLGPNG--GLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 59 ----------------~~~~~~~~~l~~~~--~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
..++++.+++.... ....... +..++|+..+++++.. +|++++||||....+....+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~ 187 (251)
T PRK14244 110 PKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAV--KPTMLLMDEPCSALDPVATNV 187 (251)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHH
Confidence 11234444443210 0011112 2348899999999999 999999999966666667778
Q ss_pred HHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+.++|+++++ +.|| +++||+++++.++||+++++..|..+.++
T Consensus 188 l~~~l~~~~~-~~ti----iiisH~~~~~~~~~d~i~~l~~G~i~~~~ 230 (251)
T PRK14244 188 IENLIQELKK-NFTI----IVVTHSMKQAKKVSDRVAFFQSGRIVEYN 230 (251)
T ss_pred HHHHHHHHhc-CCeE----EEEeCCHHHHHhhcCEEEEEECCEEEEeC
Confidence 8889988854 7899 99999999999999999999988766543
No 231
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.5e-27 Score=189.13 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=113.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc--c---ccceEEEeecCccc---------ccCCCCc-------cCCcccccc-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDYPV-------AMDIRELIS- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~--~---~~G~I~i~g~~~~~---------~~~~~~~-------~~~~~~~~~- 58 (175)
+||+++|+|+||||||||+++|+|+.+ | ++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 108 (252)
T PRK14256 29 ENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIA 108 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHh
Confidence 599999999999999999999999986 3 68999999976421 1122222 122222221
Q ss_pred ----------------HHHHHHHhCCCCCC--chhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchh
Q 030541 59 ----------------LEDVMEELGLGPNG--GLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 59 ----------------~~~~~~~~~l~~~~--~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
..+.++.+++.... ....... +..++|+..+++++.. +|++++||||....+....+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEP~~gLD~~~~~~ 186 (252)
T PRK14256 109 GYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAV--KPEVILMDEPASALDPISTLK 186 (252)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHH
Confidence 01222233332110 0001112 2348899999999999 999999999966666667778
Q ss_pred HHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+.++++++++ +.|| +++||+++++.++||+++++..+..+..++
T Consensus 187 l~~~l~~~~~-~~ti----iivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14256 187 IEELIEELKE-KYTI----IIVTHNMQQAARVSDYTAFFYMGDLVECGE 230 (252)
T ss_pred HHHHHHHHHh-CCcE----EEEECCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 8889999865 5799 999999999999999999999887665443
No 232
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.95 E-value=5.9e-28 Score=230.79 Aligned_cols=157 Identities=16% Similarity=0.058 Sum_probs=120.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc------ccCCCCc-------cCCccccccH--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYPV-------AMDIRELISL-------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~~-------~~~~~~~~~~-------- 59 (175)
+||++||+||||||||||+|+|+|+++|++|+|.++|+++.. +.+++.+ .+++++++..
T Consensus 1964 ~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~ 2043 (2272)
T TIGR01257 1964 PGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVP 2043 (2272)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCC
Confidence 599999999999999999999999999999999999987531 1233333 2344443321
Q ss_pred --------HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCC
Q 030541 60 --------EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 60 --------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
.++++.+++..........-+.+++||..+++++.. +|++++||||+...+...+..+++++++++++|+
T Consensus 2044 ~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~--~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~ 2121 (2272)
T TIGR01257 2044 AEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIG--CPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGR 2121 (2272)
T ss_pred HHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 123444555432222222234448999999999999 9999999999777777778888999999877799
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|| +++||++++++.+||++++|..|..+
T Consensus 2122 TI----ILtTH~mee~e~lcDrV~IL~~G~i~ 2149 (2272)
T TIGR01257 2122 AV----VLTSHSMEECEALCTRLAIMVKGAFQ 2149 (2272)
T ss_pred EE----EEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99 99999999999999999999887654
No 233
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=7.5e-28 Score=189.56 Aligned_cols=152 Identities=18% Similarity=0.125 Sum_probs=120.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCCccCCccccc-cHHHHHHHhCCCCCCchhhhHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELI-SLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+||++||+|+||||||||.|+|+|+++|++|+|.+.|.++.... ..+.. ...+.++.+++........+ .
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--------~~~~~~~v~elL~~Vgl~~~~~~ryP-h 108 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--------KEERRERVLELLEKVGLPEEFLYRYP-H 108 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--------hhHHHHHHHHHHHHhCCCHHHhhcCC-c
Confidence 59999999999999999999999999999999999999854322 11111 14567777786654433333 3
Q ss_pred HHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh-CCCcEEEEeeeehhchhhhhcCCcceeE
Q 030541 80 HLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVC 156 (175)
Q Consensus 80 ~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~ 156 (175)
++| |+||..+||+++- +|+++++|||....+.+-+..+.++++++++ .|.|. +++|||+..+..++|++++
T Consensus 109 elSGGQrQRi~IARALal--~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~----lFIsHDL~vv~~isdri~V 182 (268)
T COG4608 109 ELSGGQRQRIGIARALAL--NPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTY----LFISHDLSVVRYISDRIAV 182 (268)
T ss_pred ccCchhhhhHHHHHHHhh--CCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeE----EEEEEEHHhhhhhcccEEE
Confidence 344 9999999999999 9999999999444444445566678999865 59999 9999999999999999999
Q ss_pred eccchhhHHhh
Q 030541 157 FCCTHTVVQRA 167 (175)
Q Consensus 157 ~~~~~~~~~~~ 167 (175)
|.-|+.|-...
T Consensus 183 My~G~iVE~g~ 193 (268)
T COG4608 183 MYLGKIVEIGP 193 (268)
T ss_pred EecCceeEecC
Confidence 99998765443
No 234
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.6e-27 Score=189.64 Aligned_cols=151 Identities=18% Similarity=0.189 Sum_probs=107.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc-----ccceEEEeecCccc---------ccCCCCc-------cCCccccccH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDYPV-------AMDIRELISL 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~---------~~~~~~~-------~~~~~~~~~~ 59 (175)
+||+++|+||||||||||+|+|+|+.+| ++|+|.++|.++.. ..+++.+ ..++.+++..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~ 108 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVA 108 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHH
Confidence 5999999999999999999999999974 79999999876421 1122222 1233322210
Q ss_pred -----------------HHHHHHhCCCCC--CchhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchh
Q 030541 60 -----------------EDVMEELGLGPN--GGLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 60 -----------------~~~~~~~~l~~~--~~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
.++++.+++... ........ +..++||..+++++.. +|++++||||....+......
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~ 186 (258)
T PRK14241 109 GLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAV--EPDVLLMDEPCSALDPISTLA 186 (258)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHH
Confidence 112223333110 00111112 2338899999999999 999999999966666667778
Q ss_pred HHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEec
Q 030541 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFC 158 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~ 158 (175)
+.++++++++ +.|| +++||+++++.++||+++++.
T Consensus 187 l~~~l~~~~~-~~tv----iivsH~~~~~~~~~d~i~~l~ 221 (258)
T PRK14241 187 IEDLINELKQ-DYTI----VIVTHNMQQAARVSDQTAFFN 221 (258)
T ss_pred HHHHHHHHhc-CCEE----EEEecCHHHHHHhCCEEEEEe
Confidence 8889998854 6888 999999999999999999996
No 235
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=9.2e-28 Score=186.62 Aligned_cols=157 Identities=18% Similarity=0.078 Sum_probs=109.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCcc------CCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA------MDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~------~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. +.+++.+. .++.+++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~ 108 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEE 108 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCCCCCHHH
Confidence 499999999999999999999999999999999999876421 12233321 12222111
Q ss_pred HHHHHHHhCCCCCC-----------chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 LEDVMEELGLGPNG-----------GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 ~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
....++.+++.... ......-+..++++..++++++. +|++++||||....+...++.+.+++++++
T Consensus 109 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~--~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 186 (221)
T cd03244 109 LWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLR--KSKILVLDEATASVDPETDALIQKTIREAF 186 (221)
T ss_pred HHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 11112222221100 00001112238899999999999 999999999966666667778888898875
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+ +.|| +++||+.+++.. +++++++..+..+.+
T Consensus 187 ~-~~ti----i~~sh~~~~~~~-~d~i~~l~~g~~~~~ 218 (221)
T cd03244 187 K-DCTV----LTIAHRLDTIID-SDRILVLDKGRVVEF 218 (221)
T ss_pred C-CCEE----EEEeCCHHHHhh-CCEEEEEECCeEEec
Confidence 4 6888 999999999976 999999998876543
No 236
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.1e-28 Score=192.73 Aligned_cols=159 Identities=16% Similarity=0.182 Sum_probs=111.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc-----ccceEEEeecCccc---------ccCCCCcc------CCccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. ..+++.+. .++.+++..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~ 107 (250)
T PRK14240 28 ENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYG 107 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCcccHHHHHHHH
Confidence 5999999999999999999999999763 69999999876431 12233221 122222111
Q ss_pred ----------------HHHHHHhCCCCC--CchhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 60 ----------------EDVMEELGLGPN--GGLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~--~~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.++++.+++... ........ +..++||..+++++.. +|++++||||....+......+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l 185 (250)
T PRK14240 108 PRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAV--EPEVLLMDEPTSALDPISTLKI 185 (250)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHH
Confidence 011111221100 00001111 2338899999999999 9999999999666667777788
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.++++++++ +.|| +++||+++++.+++++++++..+..+.+.
T Consensus 186 ~~~l~~~~~-~~ti----ii~sH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (250)
T PRK14240 186 EELIQELKK-DYTI----VIVTHNMQQASRISDKTAFFLNGEIVEFG 227 (250)
T ss_pred HHHHHHHhc-CCeE----EEEEeCHHHHHhhCCEEEEEECCEEEEeC
Confidence 889988854 7899 99999999999999999999988766543
No 237
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.7e-28 Score=192.79 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=112.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc-----cccceEEEeecCccc---------ccCCCCcc------CCccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+|+||||||||+|+|+|+.+ |++|+|.++|.++.. ..++|.+. .++.+++..
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 125 (268)
T PRK14248 46 KHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHA 125 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccHHHHHHHH
Confidence 599999999999999999999999864 689999999876421 12223221 122222110
Q ss_pred ----------------HHHHHHhCCCCCC--chhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 60 ----------------EDVMEELGLGPNG--GLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~~--~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.+.++.+++.... ....... +..++||..++++++. +|+++|||||....+....+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l 203 (268)
T PRK14248 126 LKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAM--KPAVLLLDEPASALDPISNAKI 203 (268)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhC--CCCEEEEcCCCcccCHHHHHHH
Confidence 1112222221100 0011112 2238899999999999 9999999999766667777788
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.++++++++ +.|| +++||+++++.++|++++++..|..+..+
T Consensus 204 ~~~l~~~~~-~~ti----ii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 245 (268)
T PRK14248 204 EELITELKE-EYSI----IIVTHNMQQALRVSDRTAFFLNGDLVEYD 245 (268)
T ss_pred HHHHHHHhc-CCEE----EEEEeCHHHHHHhCCEEEEEECCEEEEeC
Confidence 889999865 6789 99999999999999999999988765543
No 238
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.2e-27 Score=189.45 Aligned_cols=159 Identities=15% Similarity=0.157 Sum_probs=113.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhcc---Ccc--ccceEEEeecCccc---------ccCCCCcc------CCcccccc--
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRH---CET--VRRTMHIVNLDPAA---------ENFDYPVA------MDIRELIS-- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl---~~~--~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~-- 58 (175)
+||+++|+||||||||||+|+|+|+ .+| ++|+|.++|.++.. ..++|.+. .++.+++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~ 107 (250)
T PRK14245 28 EKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYG 107 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCcccHHHHHHHH
Confidence 5999999999999999999999997 454 58999999976421 12233221 12222211
Q ss_pred ---------------HHHHHHHhCCCCCC--chhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 59 ---------------LEDVMEELGLGPNG--GLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~~~--~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..++++.+++.... ....... +..++++..+++++.. +|++++||||....+...++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l 185 (250)
T PRK14245 108 LRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAV--SPSVLLMDEPASALDPISTAKV 185 (250)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHH
Confidence 11233334442110 0111112 3348899999999999 9999999999666666677788
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.++|++++ ++.|| +++||+++++.++||+++++..|..+.+.
T Consensus 186 ~~~l~~~~-~~~ti----iivtH~~~~~~~~~d~v~~l~~G~~~~~~ 227 (250)
T PRK14245 186 EELIHELK-KDYTI----VIVTHNMQQAARVSDKTAFFYMGEMVEYD 227 (250)
T ss_pred HHHHHHHh-cCCeE----EEEeCCHHHHHhhCCEEEEEECCEEEEEC
Confidence 88999985 47899 99999999999999999999988776543
No 239
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.95 E-value=9.1e-28 Score=211.82 Aligned_cols=162 Identities=14% Similarity=0.133 Sum_probs=119.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCc---------------------ccccCCCCc---------c
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---------------------AAENFDYPV---------A 50 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~---------------------~~~~~~~~~---------~ 50 (175)
+||++||+||||||||||+|+|+|+++|++|+|.++|..+ +...+++.+ .
T Consensus 41 ~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~ 120 (623)
T PRK10261 41 RGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPV 120 (623)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCC
Confidence 4999999999999999999999999999999999877421 001222222 2
Q ss_pred CCcccccc-----------------HHHHHHHhCCCCC-CchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcc
Q 030541 51 MDIRELIS-----------------LEDVMEELGLGPN-GGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQI 110 (175)
Q Consensus 51 ~~~~~~~~-----------------~~~~~~~~~l~~~-~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~ 110 (175)
+++.+++. ..++++.+++... ........++ .|+||..|+++++. +|++||||||+..
T Consensus 121 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~--~P~lLllDEPt~~ 198 (623)
T PRK10261 121 FTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSC--RPAVLIADEPTTA 198 (623)
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCc
Confidence 23333221 1234555666421 0011122333 49999999999999 9999999999666
Q ss_pred cccccchhHHHHHHHHHhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 111 ELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 111 ~~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
.+......+.+++++++++ |.|| +++||+++++.++||++++|+.|..+..+++
T Consensus 199 LD~~~~~~l~~ll~~l~~~~g~tv----i~itHdl~~~~~~adri~vl~~G~i~~~g~~ 253 (623)
T PRK10261 199 LDVTIQAQILQLIKVLQKEMSMGV----IFITHDMGVVAEIADRVLVMYQGEAVETGSV 253 (623)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCEE----EEEcCCHHHHHHhCCEEEEeeCCeecccCCH
Confidence 6677777888899998754 8999 9999999999999999999999887765443
No 240
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.95 E-value=1.3e-27 Score=206.90 Aligned_cols=159 Identities=11% Similarity=0.021 Sum_probs=117.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEe-ecC---cc----------cccCCCCc-------cCCcccccc-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-NLD---PA----------AENFDYPV-------AMDIRELIS- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~-g~~---~~----------~~~~~~~~-------~~~~~~~~~- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++ |.+ +. ...++|.+ .+++.+++.
T Consensus 309 ~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~ 388 (520)
T TIGR03269 309 EGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTE 388 (520)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHH
Confidence 599999999999999999999999999999999996 531 10 11223222 223333321
Q ss_pred --------------HHHHHHHhCCCCCC---chhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 59 --------------LEDVMEELGLGPNG---GLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 --------------~~~~~~~~~l~~~~---~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..++++.+++.... ........+| |+||..+++++.. +|+++|||||+...+......+
T Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~lLllDEPt~~LD~~~~~~l 466 (520)
T TIGR03269 389 AIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIK--EPRIVILDEPTGTMDPITKVDV 466 (520)
T ss_pred HHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 12344555664310 1122223444 8999999999999 9999999999777667777788
Q ss_pred HHHHHHHHhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 120 RNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 120 ~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
.+++++++++ |.|| +++||+++++.++||++++++.|..+.+
T Consensus 467 ~~~l~~l~~~~g~tv----i~vsHd~~~~~~~~d~i~~l~~G~i~~~ 509 (520)
T TIGR03269 467 THSILKAREEMEQTF----IIVSHDMDFVLDVCDRAALMRDGKIVKI 509 (520)
T ss_pred HHHHHHHHHHcCcEE----EEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 8899998654 8999 9999999999999999999998876544
No 241
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.1e-27 Score=183.27 Aligned_cols=160 Identities=16% Similarity=0.132 Sum_probs=120.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCc-----------------------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV----------------------- 49 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~----------------------- 49 (175)
+||-.+|+||||||||||+++++|..+|.+|.+.+.|+.... +.++++.
T Consensus 56 ~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~ 135 (257)
T COG1119 56 PGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFA 135 (257)
T ss_pred CCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccc
Confidence 489999999999999999999999999999999998875422 1112111
Q ss_pred -------cCCccccccHHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHH
Q 030541 50 -------AMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 50 -------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
.++..+.-....+++.+++..........-+-+++++.+++|+++. +|++||||||.+..+..+++.+.+.
T Consensus 136 siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~--~P~LLiLDEP~~GLDl~~re~ll~~ 213 (257)
T COG1119 136 SIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVK--DPELLILDEPAQGLDLIAREQLLNR 213 (257)
T ss_pred cccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhc--CCCEEEecCccccCChHHHHHHHHH
Confidence 0111111124566777776543333332223348889999999999 9999999999666666677778888
Q ss_pred HHHHHhC--CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 123 VDHLKSR--NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 123 l~~l~~~--g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+.++... +.++ +++||..+|+-..++++..+..+++++|+
T Consensus 214 l~~~~~~~~~~~l----l~VtHh~eEi~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 214 LEELAASPGAPAL----LFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred HHHHhcCCCCceE----EEEEcchhhcccccceEEEeeCCceeecc
Confidence 8888654 7788 99999999999999999999999998875
No 242
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.95 E-value=2.1e-27 Score=184.46 Aligned_cols=153 Identities=16% Similarity=0.171 Sum_probs=104.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----------ccCCCCcc------CCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPVA------MDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~~------~~~~~~~~----- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++|.+. .+..+++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~ 105 (218)
T cd03290 26 TGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPF 105 (218)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccccHHHHHhhcCcC
Confidence 599999999999999999999999999999999999875421 11222221 12211111
Q ss_pred ----HHHHHHHhCCCCCC-----------chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHH--
Q 030541 59 ----LEDVMEELGLGPNG-----------GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN-- 121 (175)
Q Consensus 59 ----~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~-- 121 (175)
...+++.+++.... ......-+..+++|..++++++. +|+++|||||....+....+.+.+
T Consensus 106 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~~~~ 183 (218)
T cd03290 106 NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ--NTNIVFLDDPFSALDIHLSDHLMQEG 183 (218)
T ss_pred CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCccccCHHHHHHHHHHH
Confidence 01122222221000 00011122348899999999999 999999999966655555666665
Q ss_pred HHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccc
Q 030541 122 FVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 122 ~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
+++.++++|.|+ +++||+.+++. .||+++++..+
T Consensus 184 ll~~~~~~~~ti----i~~sH~~~~~~-~~d~i~~l~~G 217 (218)
T cd03290 184 ILKFLQDDKRTL----VLVTHKLQYLP-HADWIIAMKDG 217 (218)
T ss_pred HHHHHhcCCCEE----EEEeCChHHHh-hCCEEEEecCC
Confidence 666676678999 99999999985 69999988764
No 243
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.5e-27 Score=188.87 Aligned_cols=158 Identities=11% Similarity=0.150 Sum_probs=112.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc-----cccceEEEeecCccc---------ccCCCCc------cCCccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPV------AMDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~------~~~~~~~~~~- 59 (175)
+||+++|+|+||||||||+|+|+|+++ |++|+|.++|.++.. ..+++.+ ..++.+++..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~ 108 (251)
T PRK14251 29 EKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYG 108 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCCcHHHHHHHH
Confidence 599999999999999999999999987 479999999976421 1122222 1122222210
Q ss_pred ----------------HHHHHHhCCCCC--CchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 60 ----------------EDVMEELGLGPN--GGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~--~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.++++.+++... .........+ +++|+..+++++.. +|++++||||....+......+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~--~p~llllDEP~~~LD~~~~~~l 186 (251)
T PRK14251 109 LKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAV--RPKVVLLDEPTSALDPISSSEI 186 (251)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCCccCCHHHHHHH
Confidence 112233333210 0001112223 48899999999999 9999999999666666677788
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
.++++++++ +.|| +++||+++++.+++++++++..|..+..
T Consensus 187 ~~~l~~~~~-~~ti----iiisH~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14251 187 EETLMELKH-QYTF----IMVTHNLQQAGRISDQTAFLMNGDLIEA 227 (251)
T ss_pred HHHHHHHHc-CCeE----EEEECCHHHHHhhcCEEEEEECCEEEEe
Confidence 888988854 6899 9999999999999999999988876544
No 244
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.4e-27 Score=190.04 Aligned_cols=160 Identities=16% Similarity=0.176 Sum_probs=113.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc--c---ccceEEEeecCccc---------ccCCCCcc------CCccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~--~---~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+++|+|+.+ | ++|+|.++|.++.. ..++|.+. .++.+++..
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 116 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYG 116 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccccCHHHHHHhH
Confidence 599999999999999999999999987 3 59999999876421 12233221 122222110
Q ss_pred ----------------HHHHHHhCCCCC--CchhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 60 ----------------EDVMEELGLGPN--GGLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~--~~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.++++.+++... ........ +..++++..+++++.. +|++++||||....+......+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l 194 (259)
T PRK14274 117 PRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALAT--NPDVLLMDEPTSALDPVSTRKI 194 (259)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHH
Confidence 112223333210 00011112 2348899999999999 9999999999666666677788
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.++++++++ +.|+ +++||+++++.++||+++++..+..+.+++
T Consensus 195 ~~~l~~~~~-~~ti----iivtH~~~~~~~~~d~i~~l~~G~i~~~g~ 237 (259)
T PRK14274 195 EELILKLKE-KYTI----VIVTHNMQQAARVSDQTAFFYMGELVECND 237 (259)
T ss_pred HHHHHHHhc-CCEE----EEEEcCHHHHHHhCCEEEEEECCEEEEECC
Confidence 889998865 6899 999999999999999999999888765544
No 245
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.5e-27 Score=190.79 Aligned_cols=160 Identities=19% Similarity=0.165 Sum_probs=113.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc-----cccceEEEeecCccc---------ccCCCCcc------CCccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+|+|+|+++ |++|+|.++|.++.. +.+++.+. .++.+++..
T Consensus 45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~ 124 (267)
T PRK14237 45 KNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFA 124 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccccccHHHHHHhH
Confidence 599999999999999999999999986 589999999876521 12333331 122222211
Q ss_pred ----------------HHHHHHhCCCCC----CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 60 ----------------EDVMEELGLGPN----GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.++++.+++... .......-+..++++..+++++.. +|++++||||....+....+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l 202 (267)
T PRK14237 125 LERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAV--KPDILLMDEPASALDPISTMQL 202 (267)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 111222222110 000111112347899999999999 9999999999666666667788
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.++++++++ +.|| +++||+++++.++||+++++..|..+.++.
T Consensus 203 ~~~l~~~~~-~~ti----ii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 245 (267)
T PRK14237 203 EETMFELKK-NYTI----IIVTHNMQQAARASDYTAFFYLGDLIEYDK 245 (267)
T ss_pred HHHHHHHhc-CCEE----EEEecCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 889998854 6889 999999999999999999999888765544
No 246
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.95 E-value=1.5e-27 Score=206.89 Aligned_cols=159 Identities=15% Similarity=0.180 Sum_probs=116.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc-----ccceEEEeecCccc-----------ccCCCCcc---------CCccc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-----------ENFDYPVA---------MDIRE 55 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~-----------~~~~~~~~---------~~~~~ 55 (175)
+||+++|+||||||||||+|+|+|+++| ++|+|.++|.++.. ..+++.+. .+..+
T Consensus 34 ~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~ 113 (529)
T PRK15134 34 AGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEK 113 (529)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHH
Confidence 4999999999999999999999999986 79999999876421 12333321 11111
Q ss_pred cc----------c-------HHHHHHHhCCCCCC-chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCccccccc
Q 030541 56 LI----------S-------LEDVMEELGLGPNG-GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTH 115 (175)
Q Consensus 56 ~~----------~-------~~~~~~~~~l~~~~-~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~ 115 (175)
++ . ..++++.+++.... ........+ .|+||..+++++.. +|++++||||+...+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~--~p~llllDEPt~~LD~~~ 191 (529)
T PRK15134 114 QLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLT--RPELLIADEPTTALDVSV 191 (529)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCccCHHH
Confidence 10 0 12344445553210 011122333 38999999999999 999999999977777777
Q ss_pred chhHHHHHHHHHhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 116 VPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 116 ~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
...+.++|++++++ |.|| +++||+++++..+||++++|+.|..+..
T Consensus 192 ~~~l~~~l~~l~~~~g~tv----i~vtHd~~~~~~~~dri~~l~~G~i~~~ 238 (529)
T PRK15134 192 QAQILQLLRELQQELNMGL----LFITHNLSIVRKLADRVAVMQNGRCVEQ 238 (529)
T ss_pred HHHHHHHHHHHHHhcCCeE----EEEcCcHHHHHHhcCEEEEEECCEEEEe
Confidence 88888899998764 8999 9999999999999999999998876544
No 247
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=2.7e-27 Score=182.10 Aligned_cols=152 Identities=20% Similarity=0.095 Sum_probs=101.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecC-cccccCCCCccCCcccccc---------HHHHHHHhCCCC
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLGP 70 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~ 70 (175)
+|++++|+||||||||||+++|+|+.+|++|+|.++|.- ...++..+. ..++.+++. .....+.+++..
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~-~~t~~enl~~~~~~~~~~~~~~~~~~~l~~ 108 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQ-NGTIRENILFGKPFDEERYEKVIKACALEP 108 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhc-cCcHHHHhccCCCcCHHHHHHHHHHcCcHH
Confidence 599999999999999999999999999999999998721 111111111 122222221 111121212110
Q ss_pred ---------C--CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHH-HHHHHHhCCCcEEEEee
Q 030541 71 ---------N--GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN-FVDHLKSRNFNVCAVYL 138 (175)
Q Consensus 71 ---------~--~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~-~l~~l~~~g~tvli~~l 138 (175)
. .......-+..++++..++++++. +|++++||||....+....+.+.+ +++++.++|.|| +
T Consensus 109 ~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tv----i 182 (204)
T cd03250 109 DLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYS--DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTR----I 182 (204)
T ss_pred HHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEE----E
Confidence 0 000111123348899999999999 999999999955554555555555 456665568899 9
Q ss_pred eehhchhhhhcCCcceeEeccc
Q 030541 139 LDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
++||+++.+.. +++++++..+
T Consensus 183 ~~sh~~~~~~~-~d~i~~l~~G 203 (204)
T cd03250 183 LVTHQLQLLPH-ADQIVVLDNG 203 (204)
T ss_pred EEeCCHHHHhh-CCEEEEEeCC
Confidence 99999999988 9999998765
No 248
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.1e-27 Score=189.70 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=110.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccc-----cceEEEeecCccc---------ccCCCCcc------CCccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~-----~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.. +.++|.+. .++.+++..
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 108 (251)
T PRK14249 29 ERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFG 108 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcCcHHHHHhhH
Confidence 59999999999999999999999999987 6999999876421 12233221 122221110
Q ss_pred ----------------HHHHHHhCCCCCC--chhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 60 ----------------EDVMEELGLGPNG--GLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~~--~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
...++.+++.... ....... +..++|+..++++++. +|++++||||....+......+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l 186 (251)
T PRK14249 109 PRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAI--EPEVILMDEPCSALDPVSTMRI 186 (251)
T ss_pred HHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHH
Confidence 0011112221000 0001111 2238899999999999 9999999999666666667778
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
.+++++++ ++.|| +++||+++++.++||++++++.+..+..
T Consensus 187 ~~~l~~~~-~~~ti----livsh~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14249 187 EELMQELK-QNYTI----AIVTHNMQQAARASDWTGFLLTGDLVEY 227 (251)
T ss_pred HHHHHHHh-cCCEE----EEEeCCHHHHHhhCCEEEEEeCCeEEEe
Confidence 88998885 57899 9999999999999999999998776543
No 249
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.95 E-value=2e-27 Score=205.77 Aligned_cols=161 Identities=13% Similarity=0.036 Sum_probs=114.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccC--ccccceEEEee-----------------------cCcc--------------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVN-----------------------LDPA-------------- 41 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~--~~~~G~I~i~g-----------------------~~~~-------------- 41 (175)
+||+++|+||||||||||+|+|+|+. +|++|+|.++| .++.
T Consensus 25 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 104 (520)
T TIGR03269 25 EGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLR 104 (520)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHH
Confidence 49999999999999999999999997 79999999972 1110
Q ss_pred ---cccCCCCc--------cCCcccccc----------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhh
Q 030541 42 ---AENFDYPV--------AMDIRELIS----------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELD 94 (175)
Q Consensus 42 ---~~~~~~~~--------~~~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 94 (175)
.+.+++.+ ..++.+++. ..++++.+++..........-+..|+||..+++++.
T Consensus 105 ~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~ 184 (520)
T TIGR03269 105 RRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLA 184 (520)
T ss_pred HHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHh
Confidence 01122221 112222221 122344445432211111112334899999999999
Q ss_pred ccCCCCEEEEeCCCcccccccchhHHHHHHHHHh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 95 NYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 95 ~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
. +|++++||||+...+....+.+.++++++++ .|.|| +++||+++.+.++||+++.|..+..+.+++
T Consensus 185 ~--~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv----iivtHd~~~~~~~~d~i~~l~~G~i~~~g~ 252 (520)
T TIGR03269 185 K--EPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISM----VLTSHWPEVIEDLSDKAIWLENGEIKEEGT 252 (520)
T ss_pred c--CCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEE----EEEeCCHHHHHHhcCEEEEEeCCEEeeecC
Confidence 9 9999999999777777778888889999854 58999 999999999999999999999887655443
No 250
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.7e-27 Score=188.54 Aligned_cols=160 Identities=16% Similarity=0.123 Sum_probs=111.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccC--cc---ccceEEEeecCccc---------ccCCCCcc------CCccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHC--ET---VRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~--~~---~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+++|+|+. +| ++|+|.++|.++.. ..+++.+. .++.+++..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 109 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYG 109 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCcCcHHHHHHHH
Confidence 59999999999999999999999985 36 59999999876421 12233221 122222210
Q ss_pred ----------------HHHHHHhCCCCCC--chhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 60 ----------------EDVMEELGLGPNG--GLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~~--~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..+++.+++.... ....... +.+++++..+++++.. +|+++|||||....+....+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l 187 (252)
T PRK14239 110 LRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLAT--SPKIILLDEPTSALDPISAGKI 187 (252)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHH
Confidence 0112222221100 0001111 2237899999999999 9999999999766667777788
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.++|+++++ +.|| +++||+++++.++||+++++..+..+.+++
T Consensus 188 ~~~l~~~~~-~~ti----i~~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T PRK14239 188 EETLLGLKD-DYTM----LLVTRSMQQASRISDRTGFFLDGDLIEYND 230 (252)
T ss_pred HHHHHHHhh-CCeE----EEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 889998865 6899 999999999999999999999887665443
No 251
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=4.8e-27 Score=177.19 Aligned_cols=144 Identities=17% Similarity=0.119 Sum_probs=109.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccc--cCCCCccCCccccccHHHHHHHhCCCCC-Cchhhh
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--NFDYPVAMDIRELISLEDVMEELGLGPN-GGLIYC 77 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 77 (175)
+|++++|+||||||||||+|++. +++|++.+++...... .+.+.+ ..++++.+++... ......
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~---------q~~~l~~~~L~~~~~~~~~~ 86 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFID---------QLQFLIDVGLGYLTLGQKLS 86 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEh---------HHHHHHHcCCCccccCCCcC
Confidence 59999999999999999999985 3699999887632211 122221 1567888887642 222222
Q ss_pred HHHHHHHHHHHHHHHhhccCC--CCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCccee
Q 030541 78 MEHLEDNLDDWLAEELDNYLD--DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIV 155 (175)
Q Consensus 78 ~~~~~~~~~~~l~~~l~~~~~--p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~ 155 (175)
.-+..++++..+++++.. + |++++||||....+....+.+.+.+++++++|.|| +++||+++++ ..+|+++
T Consensus 87 ~LSgGq~qrl~laral~~--~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tv----IivSH~~~~~-~~~d~i~ 159 (176)
T cd03238 87 TLSGGELQRVKLASELFS--EPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTV----ILIEHNLDVL-SSADWII 159 (176)
T ss_pred cCCHHHHHHHHHHHHHhh--CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEE----EEEeCCHHHH-HhCCEEE
Confidence 234458999999999999 9 99999999977766777778888898887779999 9999999987 5799999
Q ss_pred EeccchhhH
Q 030541 156 CFCCTHTVV 164 (175)
Q Consensus 156 ~~~~~~~~~ 164 (175)
.+..+...+
T Consensus 160 ~l~~g~~~~ 168 (176)
T cd03238 160 DFGPGSGKS 168 (176)
T ss_pred EECCCCCCC
Confidence 998766543
No 252
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.1e-27 Score=190.35 Aligned_cols=157 Identities=16% Similarity=0.168 Sum_probs=111.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc-----cccceEEEeecCccc---------ccCCCCccCCccccccHHHHHHHh
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVAMDIRELISLEDVMEEL 66 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 66 (175)
+||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. ..++|.+ +....+. .++.+++
T Consensus 49 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~--q~~~~~~-~tv~eni 125 (271)
T PRK14238 49 ENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVF--QKPNPFP-KSIYDNV 125 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEe--cCCcccc-ccHHHHH
Confidence 599999999999999999999999987 699999999876421 1223322 1111111 1222222
Q ss_pred CCC--------------------------CCC--chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccc
Q 030541 67 GLG--------------------------PNG--GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHV 116 (175)
Q Consensus 67 ~l~--------------------------~~~--~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~ 116 (175)
.+. ... ........+ ++++|..++++++. +|++++||||....+....
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~--~p~lllLDEPt~~LD~~~~ 203 (271)
T PRK14238 126 TYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAI--EPDVILMDEPTSALDPIST 203 (271)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHH
Confidence 110 000 000111122 38899999999999 9999999999666666667
Q ss_pred hhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 117 PVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 117 ~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
..+.++++++++ +.|| +++||+++++.++||+++++..|..+..+.
T Consensus 204 ~~l~~~l~~~~~-~~ti----iivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 249 (271)
T PRK14238 204 LKVEELVQELKK-DYSI----IIVTHNMQQAARISDKTAFFLNGYVNEYDD 249 (271)
T ss_pred HHHHHHHHHHHc-CCEE----EEEEcCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 788888988865 6899 999999999999999999999887765443
No 253
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4e-27 Score=186.45 Aligned_cols=159 Identities=14% Similarity=0.175 Sum_probs=111.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccc-----cceEEEeecCccc---------ccCCCCc-------cCCccccccH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDYPV-------AMDIRELISL 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~-----~G~I~i~g~~~~~---------~~~~~~~-------~~~~~~~~~~ 59 (175)
+||+++|+||||||||||+|+|+|+++|+ +|+|.++|.++.. ..++|.+ ..+..+++..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~ 108 (252)
T PRK14272 29 RGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVA 108 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHH
Confidence 59999999999999999999999999864 8999999876421 1222222 1222222210
Q ss_pred -------------HH----HHHHhCCCCC--CchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchh
Q 030541 60 -------------ED----VMEELGLGPN--GGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 60 -------------~~----~~~~~~l~~~--~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
.+ .++.+++... .........+ .+++|..+++++.. +|++++||||....+......
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~ 186 (252)
T PRK14272 109 GLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAV--EPEILLMDEPTSALDPASTAR 186 (252)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHH
Confidence 00 0111211100 0001111223 38899999999999 999999999966666777778
Q ss_pred HHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+.++++++++ +.|+ +++||+.+++.++||+++++..+..+.++
T Consensus 187 l~~~l~~~~~-~~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14272 187 IEDLMTDLKK-VTTI----IIVTHNMHQAARVSDTTSFFLVGDLVEHG 229 (252)
T ss_pred HHHHHHHHhc-CCeE----EEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 8889998864 6899 99999999999999999999888766543
No 254
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=6.4e-27 Score=173.13 Aligned_cols=133 Identities=19% Similarity=0.136 Sum_probs=104.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (175)
+|++++|+|+||||||||+++|+|+++|++|+|+++|.+...... ......+.+... -+
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~--------------~~~~~~i~~~~q-------lS 82 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPL--------------EELRRRIGYVPQ-------LS 82 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCH--------------HHHHhceEEEee-------CC
Confidence 589999999999999999999999999999999999875432100 000000110000 22
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccc
Q 030541 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
..++++..++++++. +|++++||||....+......+.+.++++++++.|+ +++||+++++..+||+++.++.+
T Consensus 83 ~G~~~r~~l~~~l~~--~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~ti----i~~sh~~~~~~~~~d~i~~l~~g 156 (157)
T cd00267 83 GGQRQRVALARALLL--NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTV----IIVTHDPELAELAADRVIVLKDG 156 (157)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEE----EEEeCCHHHHHHhCCEEEEEeCc
Confidence 347888999999999 999999999966666677778888998887667899 99999999999999999988764
No 255
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=6.1e-27 Score=178.60 Aligned_cols=160 Identities=15% Similarity=0.135 Sum_probs=119.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccc----------------cCCCCccCCcccccc------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE----------------NFDYPVAMDIRELIS------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~----------------~~~~~~~~~~~~~~~------ 58 (175)
+|+++.++|.||||||||+++|+|-++|++|+|.++|.++... ..+..+.+++.+++.
T Consensus 31 ~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg 110 (263)
T COG1101 31 EGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRG 110 (263)
T ss_pred CCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcC
Confidence 5999999999999999999999999999999999999875321 123334445555443
Q ss_pred ----------------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHH
Q 030541 59 ----------------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120 (175)
Q Consensus 59 ----------------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~ 120 (175)
+..-+..++++..+....+...+| |+|..+|..+..+ .|++++|||.+...+......++
T Consensus 111 ~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~--~pkiLLLDEHTAALDPkta~~vm 188 (263)
T COG1101 111 KKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLH--PPKILLLDEHTAALDPKTAEFVM 188 (263)
T ss_pred cccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcC--CCcEEEecchhhcCCcchHHHHH
Confidence 123334445554443444445555 6665566666666 99999999996666666666677
Q ss_pred HHHHHH-HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 121 NFVDHL-KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 121 ~~l~~l-~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++-.++ .+.+.|. +|+||+|+++.+|-+|.+++++|.+|+..
T Consensus 189 ~lT~kiV~~~klTt----lMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 189 ELTAKIVEEHKLTT----LMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHHHHHHhcCCce----EEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 777776 4568999 99999999999999999999999988643
No 256
>PRK13409 putative ATPase RIL; Provisional
Probab=99.94 E-value=2.5e-27 Score=207.50 Aligned_cols=153 Identities=18% Similarity=0.120 Sum_probs=115.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEE-----------EeecCccc---------ccCCCCcc----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA---------ENFDYPVA---------- 50 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~-----------i~g~~~~~---------~~~~~~~~---------- 50 (175)
+|+++||+||||||||||+|+|+|+++|++|+|. ++|.++.. ..+.+.+.
T Consensus 98 ~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~ 177 (590)
T PRK13409 98 EGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFK 177 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhc
Confidence 5999999999999999999999999999999997 77766421 01111111
Q ss_pred CCcccccc-------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHH
Q 030541 51 MDIRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 51 ~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
.++.+++. ..++++.+++..........-+..++|+..++++++. +|++++||||+...+...+..+.+++
T Consensus 178 ~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~--~p~lllLDEPts~LD~~~~~~l~~~i 255 (590)
T PRK13409 178 GKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLR--DADFYFFDEPTSYLDIRQRLNVARLI 255 (590)
T ss_pred chHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 02222221 2345556666432222222223348999999999999 99999999997777777788888899
Q ss_pred HHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccc
Q 030541 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
+++++ |.|| +++||+++++..++|++.++..+
T Consensus 256 ~~l~~-g~tv----IivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 256 RELAE-GKYV----LVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHC-CCEE----EEEeCCHHHHHHhCCEEEEEeCC
Confidence 99987 9999 99999999999999999999764
No 257
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.4e-27 Score=188.54 Aligned_cols=160 Identities=14% Similarity=0.141 Sum_probs=113.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc-----cccceEEEeecCccc---------ccCCCCcc------CCccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..+++.+. .++.+++..
T Consensus 50 ~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~ 129 (272)
T PRK14236 50 KNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYG 129 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcccHHHHHHHH
Confidence 599999999999999999999999987 489999999876431 12222221 122222110
Q ss_pred ----------------HHHHHHhCCCCC--CchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 60 ----------------EDVMEELGLGPN--GGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~--~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.++++.+++... .........+ .+++|..+++++.. +|++++||||....+....+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l 207 (272)
T PRK14236 130 LRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAI--EPEVLLLDEPTSALDPISTLKI 207 (272)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHH
Confidence 111222222110 0000111223 48899999999999 9999999999666666677788
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.++++++++ +.|| +++||+++++.++||+++++..+..+.+++
T Consensus 208 ~~~L~~~~~-~~ti----iivtH~~~~~~~~~d~i~~l~~G~i~~~g~ 250 (272)
T PRK14236 208 EELITELKS-KYTI----VIVTHNMQQAARVSDYTAFMYMGKLVEYGD 250 (272)
T ss_pred HHHHHHHHh-CCeE----EEEeCCHHHHHhhCCEEEEEECCEEEecCC
Confidence 889999865 6888 999999999999999999999888766543
No 258
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.9e-27 Score=190.17 Aligned_cols=158 Identities=16% Similarity=0.204 Sum_probs=110.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc-----cccceEEEeecCccc---------ccCCCCcc------CCccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+++|+|+.+ |++|+|.++|.++.. ..++|.+. .++.+++..
T Consensus 64 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~ 143 (286)
T PRK14275 64 SKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYG 143 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCccCHHHHHHhH
Confidence 499999999999999999999999864 499999999875421 12333321 122221110
Q ss_pred ----------------HHHHHHhCCCCCC--chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 60 ----------------EDVMEELGLGPNG--GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~~--~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.++++.+++.... ........+ +++|+..+++++.. +|+++|||||....+....+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lllLDEPt~gLD~~~~~~l 221 (286)
T PRK14275 144 PRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAV--EPEILLLDEPTSALDPKATAKI 221 (286)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHH
Confidence 1122223321100 001111223 48899999999999 9999999999666666667778
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
.++++++++ +.|| +++||+++++.++||+++++..|..+..
T Consensus 222 ~~~L~~~~~-~~tv----IivsH~~~~~~~~~d~i~~L~~G~i~~~ 262 (286)
T PRK14275 222 EDLIQELRG-SYTI----MIVTHNMQQASRVSDYTMFFYEGVLVEH 262 (286)
T ss_pred HHHHHHHhc-CCeE----EEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 888988865 5788 9999999999999999999988776543
No 259
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.8e-27 Score=188.88 Aligned_cols=148 Identities=14% Similarity=0.159 Sum_probs=105.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc-----cccceEEEeecCccc---------ccCCCCccCCccccccHHHHHHHh
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVAMDIRELISLEDVMEEL 66 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 66 (175)
+||+++|+|+||||||||+|+|+|+.+ |++|+|.++|.++.. ..+++.+ +....+. .++.+++
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~--q~~~~~~-~tv~enl 111 (264)
T PRK14243 35 KNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVF--QKPNPFP-KSIYDNI 111 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEc--cCCcccc-ccHHHHH
Confidence 599999999999999999999999976 489999999876421 1223322 1111111 1222222
Q ss_pred C------------------------CCCCC--chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchh
Q 030541 67 G------------------------LGPNG--GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 67 ~------------------------l~~~~--~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
. +.... ........+ .++||..+++++.. +|+++|||||....+....+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~ 189 (264)
T PRK14243 112 AYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAV--QPEVILMDEPCSALDPISTLR 189 (264)
T ss_pred HhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHH
Confidence 2 11000 000011122 37899999999999 999999999966666777778
Q ss_pred HHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEec
Q 030541 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFC 158 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~ 158 (175)
+.++++++++ +.|| +++||+++++.++||+++++.
T Consensus 190 l~~~L~~~~~-~~tv----i~vtH~~~~~~~~~d~v~~l~ 224 (264)
T PRK14243 190 IEELMHELKE-QYTI----IIVTHNMQQAARVSDMTAFFN 224 (264)
T ss_pred HHHHHHHHhc-CCEE----EEEecCHHHHHHhCCEEEEEe
Confidence 8889998865 5789 999999999999999999997
No 260
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.94 E-value=2.8e-27 Score=205.21 Aligned_cols=159 Identities=19% Similarity=0.155 Sum_probs=115.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------ccCCCCc---------cCCcccccc---
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV---------AMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~---------~~~~~~~~~--- 58 (175)
+||+++|+||||||||||+|+|+|+++ ++|+|+++|.++.. ..++|.+ ..++.+++.
T Consensus 311 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~ 389 (529)
T PRK15134 311 PGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGL 389 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHH
Confidence 599999999999999999999999995 89999999865421 1233322 112222211
Q ss_pred ---------------HHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHH
Q 030541 59 ---------------LEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..++++.+++.. ........-+..|+||..+++++.. +|+++|||||+...+......+.++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~ 467 (529)
T PRK15134 390 RVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALIL--KPSLIILDEPTSSLDKTVQAQILAL 467 (529)
T ss_pred HhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhC--CCCEEEeeCCccccCHHHHHHHHHH
Confidence 112334444431 1111111123348999999999999 9999999999777777777888889
Q ss_pred HHHHHhC-CCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 123 VDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 123 l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++++++ |.|| +++||+++++.++||++++++.|..+-+.
T Consensus 468 l~~~~~~~~~tv----i~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 508 (529)
T PRK15134 468 LKSLQQKHQLAY----LFISHDLHVVRALCHQVIVLRQGEVVEQG 508 (529)
T ss_pred HHHHHHhhCCEE----EEEeCCHHHHHHhcCeEEEEECCEEEEEc
Confidence 9998764 8999 99999999999999999999988765443
No 261
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.94 E-value=4.9e-27 Score=224.59 Aligned_cols=160 Identities=14% Similarity=0.050 Sum_probs=122.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc------ccCCCC-------ccCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYP-------VAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~-------~~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.+++. +.+++.+++.
T Consensus 955 ~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~ 1034 (2272)
T TIGR01257 955 ENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRS 1034 (2272)
T ss_pred CCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCC
Confidence 599999999999999999999999999999999999987531 122222 2234443332
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCC
Q 030541 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
..++++.+++..........-+.+|+||..+++++.. +|++++||||+...+...+..++++|++++ +|+
T Consensus 1035 ~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~--~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~ 1111 (2272)
T TIGR01257 1035 WEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVG--DAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGR 1111 (2272)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCC
Confidence 1234555555433222222223348999999999999 999999999977777777888889999985 589
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|| +++||+++++..++|++++|+.|..+..++
T Consensus 1112 TI----IltTHdmdea~~laDrI~iL~~GkL~~~Gs 1143 (2272)
T TIGR01257 1112 TI----IMSTHHMDEADLLGDRIAIISQGRLYCSGT 1143 (2272)
T ss_pred EE----EEEECCHHHHHHhCCEEEEEECCEEEEecC
Confidence 99 999999999999999999999887665544
No 262
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.7e-27 Score=185.50 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=111.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEee------cCcc-------cccCCCC-------ccCCcccccc--
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN------LDPA-------AENFDYP-------VAMDIRELIS-- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g------~~~~-------~~~~~~~-------~~~~~~~~~~-- 58 (175)
+||+++|+|+||||||||+++|+|+.+|++|+|.++| .+.. ...+++. +..+..+++.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~ 114 (257)
T PRK14246 35 NNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP 114 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHH
Confidence 4999999999999999999999999999997777665 3321 1112222 2222222221
Q ss_pred ---------------HHHHHHHhCCCCC----CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 59 ---------------LEDVMEELGLGPN----GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..+.++.+++... .......-+..++++..+++++.. +|++++||||....+....+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~--~P~llllDEPt~~LD~~~~~~l 192 (257)
T PRK14246 115 LKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALAL--KPKVLLMDEPTSMIDIVNSQAI 192 (257)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCCccCCHHHHHHH
Confidence 1122333444211 011111123348899999999999 9999999999666666677788
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.+++.++++ +.|| +++||+.+++.++|++++.+..+..+..+
T Consensus 193 ~~~l~~~~~-~~ti----ilvsh~~~~~~~~~d~v~~l~~g~i~~~g 234 (257)
T PRK14246 193 EKLITELKN-EIAI----VIVSHNPQQVARVADYVAFLYNGELVEWG 234 (257)
T ss_pred HHHHHHHhc-CcEE----EEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 889988864 6899 99999999999999999999888765443
No 263
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.5e-27 Score=186.61 Aligned_cols=151 Identities=17% Similarity=0.189 Sum_probs=109.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc-----ccceEEEeecCccc---------ccCCCCc------cCCcccccc--
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDYPV------AMDIRELIS-- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~---------~~~~~~~------~~~~~~~~~-- 58 (175)
+||+++|+|+||||||||+|+|+|+++| ++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 112 (261)
T PRK14263 33 KNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFG 112 (261)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccccccHHHHHHHH
Confidence 5999999999999999999999999986 79999999976521 1122221 123333221
Q ss_pred -------------HHHHHHHhCCCCCCc--hhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHH
Q 030541 59 -------------LEDVMEELGLGPNGG--LIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN 121 (175)
Q Consensus 59 -------------~~~~~~~~~l~~~~~--~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~ 121 (175)
..++++.+++..... .......+ .++++..+++++.. +|++++||||....+....+.+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPtsgLD~~~~~~l~~ 190 (261)
T PRK14263 113 LRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIAT--EPEVLLLDEPCSALDPIATRRVEE 190 (261)
T ss_pred HhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHHH
Confidence 112333333321110 00111223 48899999999999 999999999966666777778888
Q ss_pred HHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEec
Q 030541 122 FVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFC 158 (175)
Q Consensus 122 ~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~ 158 (175)
+++++++ +.|+ +++||+++++.++||++++++
T Consensus 191 ~l~~~~~-~~ti----i~isH~~~~i~~~~d~v~~l~ 222 (261)
T PRK14263 191 LMVELKK-DYTI----ALVTHNMQQAIRVADTTAFFS 222 (261)
T ss_pred HHHHHhc-CCeE----EEEeCCHHHHHHhCCEEEEEe
Confidence 9998854 6888 999999999999999999995
No 264
>PRK13409 putative ATPase RIL; Provisional
Probab=99.94 E-value=7.6e-27 Score=204.47 Aligned_cols=154 Identities=14% Similarity=0.098 Sum_probs=114.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCc--ccccCCCCccCCcccccc-----------HHHHHHHhC
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS-----------LEDVMEELG 67 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~--~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 67 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++ ..+ ..+.....+..++.+++. ..++++.++
T Consensus 364 ~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~ 442 (590)
T PRK13409 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQ 442 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCC
Confidence 599999999999999999999999999999999875 111 112222222334333322 234555555
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh-CCCcEEEEeeeehhchhh
Q 030541 68 LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQVCIR 146 (175)
Q Consensus 68 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~ 146 (175)
+..........-+..++||.++++++.. +|++++||||+...+...+..+.++|+++++ +|.|| +++||++++
T Consensus 443 l~~~~~~~~~~LSGGe~QRvaiAraL~~--~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv----iivsHD~~~ 516 (590)
T PRK13409 443 LERLLDKNVKDLSGGELQRVAIAACLSR--DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATA----LVVDHDIYM 516 (590)
T ss_pred CHHHHhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE----EEEeCCHHH
Confidence 5422111111223348999999999999 9999999999777777778888899999865 48999 999999999
Q ss_pred hhcCCcceeEeccch
Q 030541 147 FRTLPPCIVCFCCTH 161 (175)
Q Consensus 147 ~~~~~~~~~~~~~~~ 161 (175)
+..++|+++++....
T Consensus 517 ~~~~aDrvivl~~~~ 531 (590)
T PRK13409 517 IDYISDRLMVFEGEP 531 (590)
T ss_pred HHHhCCEEEEEcCcc
Confidence 999999999998744
No 265
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.3e-27 Score=185.14 Aligned_cols=160 Identities=18% Similarity=0.192 Sum_probs=112.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc-----ccceEEEeecCccc--------ccCCCCcc------CCccccccH--
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA--------ENFDYPVA------MDIRELISL-- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~--------~~~~~~~~------~~~~~~~~~-- 59 (175)
+||+++|+||||||||||+|+|+|+.+| ++|+|.++|.++.. ..++|.+. .++.+++..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~ 107 (249)
T PRK14253 28 ARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGL 107 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcccHHHHHHhHH
Confidence 5999999999999999999999999986 59999999875421 12333321 122221110
Q ss_pred ---------------HHHHHHhCCCCCC--chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHH
Q 030541 60 ---------------EDVMEELGLGPNG--GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120 (175)
Q Consensus 60 ---------------~~~~~~~~l~~~~--~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~ 120 (175)
.+.++.+++.... ........+ .++++..+++++.. +|++++||||....+......+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~ 185 (249)
T PRK14253 108 RAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM--EPDVILMDEPTSALDPIATHKIE 185 (249)
T ss_pred HhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHH
Confidence 0111122221100 000111122 38899999999999 99999999996666667777888
Q ss_pred HHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 121 NFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 121 ~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++++++++ +.|| +++||+++++.++||+++++..|..+.+++
T Consensus 186 ~~l~~~~~-~~ti----i~~sh~~~~~~~~~d~i~~l~~G~i~~~g~ 227 (249)
T PRK14253 186 ELMEELKK-NYTI----VIVTHSMQQARRISDRTAFFLMGELVEHDD 227 (249)
T ss_pred HHHHHHhc-CCeE----EEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 89999865 5899 999999999999999999999887765443
No 266
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.3e-27 Score=185.86 Aligned_cols=159 Identities=16% Similarity=0.118 Sum_probs=111.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccc-----cceEEEeecCccc---------ccCCCCcc------CCccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~-----~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+|+||||||||+++|+|+.+|+ +|+|.++|.++.. ..+++.+. .+..+++..
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~ 111 (261)
T PRK14258 32 QSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYG 111 (261)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCcccHHHHHHHH
Confidence 59999999999999999999999999985 8999998876421 11222221 222222210
Q ss_pred ----------------HHHHHHhCCCCC----CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 60 ----------------EDVMEELGLGPN----GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..+++.+++... .......-+..++++..+++++.. +|++++||||....+......+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~vllLDEP~~~LD~~~~~~l 189 (261)
T PRK14258 112 VKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAV--KPKVLLMDEPCFGLDPIASMKV 189 (261)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHH
Confidence 112222332110 000111122348899999999999 9999999999666667777778
Q ss_pred HHHHHHHHh-CCCcEEEEeeeehhchhhhhcCCcceeEecc-----chhhHH
Q 030541 120 RNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC-----THTVVQ 165 (175)
Q Consensus 120 ~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~-----~~~~~~ 165 (175)
.++++++++ ++.|| +++||+++++.++||++++++. |..+.+
T Consensus 190 ~~~l~~l~~~~~~ti----iivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 190 ESLIQSLRLRSELTM----VIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HHHHHHHHHhCCCEE----EEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 888888864 58999 9999999999999999999997 665544
No 267
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.1e-27 Score=189.69 Aligned_cols=151 Identities=16% Similarity=0.133 Sum_probs=106.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc-----ccceEEEeecCccc---------ccCCCCcc------CCccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. ..++|.+. .++.+++..
T Consensus 45 ~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~ 124 (274)
T PRK14265 45 AKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFA 124 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccccHHHHHHhH
Confidence 5999999999999999999999999863 69999999976421 12223321 122222211
Q ss_pred --------------HHHHHHhCCCCCCc--hhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHH
Q 030541 60 --------------EDVMEELGLGPNGG--LIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN 121 (175)
Q Consensus 60 --------------~~~~~~~~l~~~~~--~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~ 121 (175)
...++.+++..... ...... +..++++..+++++.. +|+++|||||....+....+.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lllLDEPt~~LD~~~~~~l~~ 202 (274)
T PRK14265 125 PRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAM--KPDVLLMDEPCSALDPISTRQVEE 202 (274)
T ss_pred HHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHHH
Confidence 01112222210000 001112 2248899999999999 999999999966666777778888
Q ss_pred HHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEec
Q 030541 122 FVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFC 158 (175)
Q Consensus 122 ~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~ 158 (175)
+|+++++ +.|| +++||+++++.++||++++|.
T Consensus 203 ~L~~~~~-~~ti----ii~sH~~~~~~~~~d~i~~l~ 234 (274)
T PRK14265 203 LCLELKE-QYTI----IMVTHNMQQASRVADWTAFFN 234 (274)
T ss_pred HHHHHhc-CCEE----EEEeCCHHHHHHhCCEEEEEe
Confidence 9998865 6889 999999999999999999996
No 268
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.2e-27 Score=188.95 Aligned_cols=158 Identities=14% Similarity=0.174 Sum_probs=110.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc-----cccceEEEeecCccc---------ccCCCCcc------CCccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..+++.+. .++.+++..
T Consensus 64 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~ 143 (285)
T PRK14254 64 ENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYG 143 (285)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCHHHHHHHH
Confidence 599999999999999999999999987 689999999876421 11222221 122222211
Q ss_pred --------------HHHHHHhCCCCCC--chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHH
Q 030541 60 --------------EDVMEELGLGPNG--GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN 121 (175)
Q Consensus 60 --------------~~~~~~~~l~~~~--~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~ 121 (175)
.++++.+++.... ........+ .++||..|+++++. +|+++|||||....+....+.+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~--~p~lLLLDEPts~LD~~~~~~l~~ 221 (285)
T PRK14254 144 LKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAP--DPEVILMDEPASALDPVATSKIED 221 (285)
T ss_pred HHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 1223333432110 011111233 38899999999999 999999999966666677778888
Q ss_pred HHHHHHhCCCcEEEEeeeehhchhhhhcCCccee-EeccchhhHH
Q 030541 122 FVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIV-CFCCTHTVVQ 165 (175)
Q Consensus 122 ~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~-~~~~~~~~~~ 165 (175)
+|++++++ .|| +++||+++++..++++++ ++..+..+..
T Consensus 222 ~L~~~~~~-~ti----ii~tH~~~~i~~~~dri~v~l~~G~i~~~ 261 (285)
T PRK14254 222 LIEELAEE-YTV----VIVTHNMQQAARISDKTAVFLTGGELVEF 261 (285)
T ss_pred HHHHHhcC-CEE----EEEeCCHHHHHhhcCEEEEEeeCCEEEEe
Confidence 99998764 788 999999999999999864 5677665433
No 269
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.8e-27 Score=185.17 Aligned_cols=155 Identities=13% Similarity=0.122 Sum_probs=118.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCc-----------ccccCCCCc-------cCCcccccc------
Q 030541 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----------AAENFDYPV-------AMDIRELIS------ 58 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~-----------~~~~~~~~~-------~~~~~~~~~------ 58 (175)
.+++|.|++|||||||+|+|+|+.+|++|.|.++|... ..+.++|+| .++++.++.
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~ 104 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS 104 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhccc
Confidence 58999999999999999999999999999999998632 334455554 344444432
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-CCcE
Q 030541 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNV 133 (175)
Q Consensus 59 ----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~tv 133 (175)
+..+.+.++++.-..+....-+-.++||.++.|++.. +|++|++|||-...+.....++.-++++++++ +..|
T Consensus 105 ~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt--~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPI 182 (352)
T COG4148 105 MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLT--APELLLMDEPLASLDLPRKREILPYLERLRDEINIPI 182 (352)
T ss_pred chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhc--CCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCE
Confidence 3456666666554332222223349999999999999 99999999994444455566777799999765 7888
Q ss_pred EEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 134 CAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 134 li~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+++||.++|+..++|++++|++|.+.
T Consensus 183 ----lYVSHS~~Ev~RLAd~vV~le~GkV~ 208 (352)
T COG4148 183 ----LYVSHSLDEVLRLADRVVVLENGKVK 208 (352)
T ss_pred ----EEEecCHHHHHhhhheEEEecCCeEE
Confidence 99999999999999999999999764
No 270
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.4e-27 Score=187.37 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=112.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc-----ccceEEEeecCccc--------ccCCCCcc------CCccccccH--
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA--------ENFDYPVA------MDIRELISL-- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~--------~~~~~~~~------~~~~~~~~~-- 59 (175)
+||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. ..++|.+. .++.+++..
T Consensus 46 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~ 125 (276)
T PRK14271 46 ARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGV 125 (276)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCccHHHHHHHHH
Confidence 5999999999999999999999999985 79999999865421 12233321 122222210
Q ss_pred ---------------HHHHHHhCCCCCC--chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHH
Q 030541 60 ---------------EDVMEELGLGPNG--GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120 (175)
Q Consensus 60 ---------------~~~~~~~~l~~~~--~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~ 120 (175)
.+.++.+++.... ........+ .+++|..|++++.. +|+++|||||....+......+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~--~p~lllLDEPt~~LD~~~~~~l~ 203 (276)
T PRK14271 126 RAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAV--NPEVLLLDEPTSALDPTTTEKIE 203 (276)
T ss_pred HhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH
Confidence 1122333332110 000111223 48899999999999 99999999996666666677788
Q ss_pred HHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 121 NFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 121 ~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
++|+++++ +.|| +++||+++++.+++|+++++..+..+.+
T Consensus 204 ~~L~~~~~-~~ti----iivsH~~~~~~~~~dri~~l~~G~i~~~ 243 (276)
T PRK14271 204 EFIRSLAD-RLTV----IIVTHNLAQAARISDRAALFFDGRLVEE 243 (276)
T ss_pred HHHHHHhc-CCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 88988865 4799 9999999999999999999998876544
No 271
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7e-27 Score=202.80 Aligned_cols=159 Identities=16% Similarity=0.133 Sum_probs=111.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecC-c--ccccCCCCccCCccccc--------------------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENFDYPVAMDIRELI-------------------- 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~--~~~~~~~~~~~~~~~~~-------------------- 57 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.. + ..+.....+.+++.+++
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 105 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYAL 105 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 599999999999999999999999999999999997632 1 01111111111221111
Q ss_pred ----------------------------cHHHHHHHhCCCCCCchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCC
Q 030541 58 ----------------------------SLEDVMEELGLGPNGGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCP 107 (175)
Q Consensus 58 ----------------------------~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP 107 (175)
....+++.+++.... .......+ .+++|..+++++.. +|++++||||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~~LSgGq~qrv~lA~aL~~--~p~lLlLDEP 182 (530)
T PRK15064 106 PEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ-HYGLMSEVAPGWKLRVLLAQALFS--NPDILLLDEP 182 (530)
T ss_pred cccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH-hcCchhhcCHHHHHHHHHHHHHhc--CCCEEEEcCC
Confidence 012344555554211 11112334 48999999999999 9999999999
Q ss_pred CcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhh-HHhhhh
Q 030541 108 GQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV-VQRAYS 169 (175)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 169 (175)
+...+..+..++.++|+ +.|.|| +++||+++++.++||+++++..+..+ +.++|.
T Consensus 183 t~~LD~~~~~~l~~~l~---~~~~ti----iivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~ 238 (530)
T PRK15064 183 TNNLDINTIRWLEDVLN---ERNSTM----IIISHDRHFLNSVCTHMADLDYGELRVYPGNYD 238 (530)
T ss_pred CcccCHHHHHHHHHHHH---hCCCeE----EEEeCCHHHHHhhcceEEEEeCCEEEEecCCHH
Confidence 66655665666666664 458899 99999999999999999999988763 455444
No 272
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.94 E-value=1.7e-26 Score=183.77 Aligned_cols=155 Identities=14% Similarity=0.029 Sum_probs=109.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCccCCccccccHHHHHHHhCCCC---
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGP--- 70 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~--- 70 (175)
+||+++|+|+||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+ +....+. .++.+++....
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~--q~~~l~~-~tv~~nl~~~~~~~ 122 (257)
T cd03288 46 PGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIIL--QDPILFS-GSIRFNLDPECKCT 122 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEEC--CCCcccc-cHHHHhcCcCCCCC
Confidence 499999999999999999999999999999999999876421 1223322 1111111 12222221110
Q ss_pred --------------------------CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHH
Q 030541 71 --------------------------NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 71 --------------------------~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
........-+..++|+..++++++. +|++++||||....+....+.+.++++
T Consensus 123 ~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEPt~gLD~~~~~~l~~~l~ 200 (257)
T cd03288 123 DDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR--KSSILIMDEATASIDMATENILQKVVM 200 (257)
T ss_pred HHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 0000000112348899999999999 999999999966655666677777888
Q ss_pred HHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 125 HLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 125 ~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++ ++.|+ +++||+++++.. |++++++..+..+..+
T Consensus 201 ~~~-~~~ti----ii~sh~~~~~~~-~dri~~l~~G~i~~~g 236 (257)
T cd03288 201 TAF-ADRTV----VTIAHRVSTILD-ADLVLVLSRGILVECD 236 (257)
T ss_pred Hhc-CCCEE----EEEecChHHHHh-CCEEEEEECCEEEEeC
Confidence 764 47899 999999999986 9999999988776543
No 273
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1e-26 Score=184.35 Aligned_cols=160 Identities=14% Similarity=0.148 Sum_probs=111.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc--c---ccceEEEeecCccc---------ccCCCCcc------CCccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~--~---~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+|+|+|+.+ | ++|+|.++|.++.. ..+++.+. .++.+++..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~ 110 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYG 110 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcccHHHHHHhh
Confidence 599999999999999999999999975 3 48999999876421 11222221 011111110
Q ss_pred ----------------HHHHHHhCCCCCC--chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 60 ----------------EDVMEELGLGPNG--GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~~--~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.++++.+++.... ........+ .++++..+++++.. +|++++||||....+....+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEP~~gLD~~~~~~l 188 (253)
T PRK14261 111 PRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAV--NPEVILMDEPCSALDPIATAKI 188 (253)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 1111222221100 000111223 37899999999999 9999999999666666677788
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.++++++++ +.|| +++||+++++.+++|+++++..|..+..+.
T Consensus 189 ~~~l~~~~~-~~tv----ii~sh~~~~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14261 189 EDLIEDLKK-EYTV----IIVTHNMQQAARVSDYTGFMYLGKLIEFDK 231 (253)
T ss_pred HHHHHHHhh-CceE----EEEEcCHHHHHhhCCEEEEEECCEEEEcCC
Confidence 889988865 5899 999999999999999999999887765443
No 274
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.2e-26 Score=184.81 Aligned_cols=151 Identities=18% Similarity=0.210 Sum_probs=107.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc-----ccceEEEeecCccc---------ccCCCCc------cCCccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDYPV------AMDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~---------~~~~~~~------~~~~~~~~~~- 59 (175)
+||+++|+|+||||||||+|+|+|+.+| ++|+|.++|.++.. ..+++.+ ..++.+++..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~ 111 (259)
T PRK14260 32 RNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYG 111 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCCccHHHHHHHH
Confidence 5999999999999999999999999885 48999999876421 1122222 1233332211
Q ss_pred ----------------HHHHHHhCCCCC--CchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 60 ----------------EDVMEELGLGPN--GGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~--~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.++++.+++... .........+ .++++..++++++. +|++++||||....+......+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l 189 (259)
T PRK14260 112 VRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAI--KPKVLLMDEPCSALDPIATMKV 189 (259)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHH
Confidence 122223333210 0011111223 38899999999999 9999999999666666667788
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEec
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFC 158 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~ 158 (175)
.++++++++ +.|| +++||+++++.++||++++++
T Consensus 190 ~~~l~~~~~-~~ti----ii~tH~~~~i~~~~d~i~~l~ 223 (259)
T PRK14260 190 EELIHSLRS-ELTI----AIVTHNMQQATRVSDFTAFFS 223 (259)
T ss_pred HHHHHHHhc-CCEE----EEEeCCHHHHHHhcCeEEEEe
Confidence 889988865 5899 999999999999999999997
No 275
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.1e-26 Score=183.94 Aligned_cols=160 Identities=14% Similarity=0.178 Sum_probs=111.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc-----cccceEEEeecCccc---------ccCCCCccC------CccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVAM------DIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~~------~~~~~~~~- 59 (175)
+||+++|+||||||||||+++|+|+.+ |++|+|.++|.++.. ..++|.+.. ++.+++..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~ 107 (250)
T PRK14266 28 KNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYG 107 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcchHHHHHHhH
Confidence 599999999999999999999999864 489999999976421 123333310 11111110
Q ss_pred ----------------HHHHHHhCCCCCC--chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 60 ----------------EDVMEELGLGPNG--GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~~--~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.+.++.+++.... ........+ .++++..+++++.. +|++++||||....+......+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEP~~gLD~~~~~~l 185 (250)
T PRK14266 108 LRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAV--SPEVILMDEPCSALDPISTTKI 185 (250)
T ss_pred HhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCCccCCHHHHHHH
Confidence 1112222221100 000111222 38899999999999 9999999999666666677788
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.++++++++ +.|| +++||+++++...+++++++..|..+.+++
T Consensus 186 ~~~l~~~~~-~~ti----ii~sh~~~~~~~~~~~i~~l~~G~i~~~g~ 228 (250)
T PRK14266 186 EDLIHKLKE-DYTI----VIVTHNMQQATRVSKYTSFFLNGEIIESGL 228 (250)
T ss_pred HHHHHHHhc-CCeE----EEEECCHHHHHhhcCEEEEEECCeEEEeCC
Confidence 889998854 7899 999999999999999999888877654433
No 276
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.6e-26 Score=183.08 Aligned_cols=158 Identities=16% Similarity=0.196 Sum_probs=110.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc--c---ccceEEEeecCccc---------ccCCCCcc------CCccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~--~---~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+|+||||||||+++|+|+.+ | ++|+|.++|.++.. ..+++.+. .++.+++..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~ 109 (252)
T PRK14255 30 QNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYG 109 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCCCcHHHHHHHH
Confidence 599999999999999999999999875 4 58999999976421 11222221 122222210
Q ss_pred ----------------HHHHHHhCCCCCC--chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 60 ----------------EDVMEELGLGPNG--GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~~--~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.+.++.+++.... ........+ .+++|..++++++. +|++++||||....+......+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l 187 (252)
T PRK14255 110 LRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAV--KPDVILLDEPTSALDPISSTQI 187 (252)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHH
Confidence 0111222221100 001111223 48899999999999 9999999999666666677788
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
.++|+++++ +.|+ +++||+++++.++||++++++.+..+..
T Consensus 188 ~~~l~~~~~-~~ti----i~vsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 188 ENMLLELRD-QYTI----ILVTHSMHQASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred HHHHHHHHh-CCEE----EEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 889998865 4789 9999999999999999999998876544
No 277
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.94 E-value=1.9e-26 Score=201.20 Aligned_cols=161 Identities=17% Similarity=0.049 Sum_probs=112.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecC---cccccCCCCccCCccccccH------------------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD---PAAENFDYPVAMDIRELISL------------------ 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~---~~~~~~~~~~~~~~~~~~~~------------------ 59 (175)
+|++++|+||||||||||+|+|+|+++|++|+|.+++.. ...+...+.+.+++.+++..
T Consensus 32 ~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 111 (556)
T PRK11819 32 PGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAA 111 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999986421 01122222222333333221
Q ss_pred ----------------------------------HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEe
Q 030541 60 ----------------------------------EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFD 105 (175)
Q Consensus 60 ----------------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLD 105 (175)
.++++.+++.. .......-+.+|++|..+++++.. +|+++|||
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~LSgGqkqrv~la~al~~--~p~vlLLD 188 (556)
T PRK11819 112 YAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAKVTKLSGGERRRVALCRLLLE--KPDMLLLD 188 (556)
T ss_pred hccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCchhhcCHHHHHHHHHHHHHhC--CCCEEEEc
Confidence 11222333321 111111123348999999999999 99999999
Q ss_pred CCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhh-HHhhhhcc
Q 030541 106 CPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV-VQRAYSFL 171 (175)
Q Consensus 106 EP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 171 (175)
||+...+..+..++.++++++ +.|| +++||+++++..+|++++++..+..+ ++++|.-|
T Consensus 189 EPt~~LD~~~~~~l~~~L~~~---~~tv----iiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 189 EPTNHLDAESVAWLEQFLHDY---PGTV----VAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred CCCCcCChHHHHHHHHHHHhC---CCeE----EEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 996666666666777777765 3488 99999999999999999999988765 56665543
No 278
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.1e-26 Score=201.56 Aligned_cols=159 Identities=15% Similarity=0.131 Sum_probs=112.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCc---ccccC--CCCccCCcccccc-----------HHHHHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAENF--DYPVAMDIRELIS-----------LEDVME 64 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~---~~~~~--~~~~~~~~~~~~~-----------~~~~~~ 64 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|... ..+.. .+....++.+++. ..++++
T Consensus 344 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~ 423 (530)
T PRK15064 344 AGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLG 423 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHH
Confidence 5999999999999999999999999999999999986421 11111 1222233333221 234555
Q ss_pred HhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhc
Q 030541 65 ELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQV 143 (175)
Q Consensus 65 ~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~ 143 (175)
.+++.. ........-+..+++|..+++++.. +|++++||||+...+......+.++++++ +.|| +++||+
T Consensus 424 ~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tv----i~vsHd 494 (530)
T PRK15064 424 RLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQ--KPNVLVMDEPTNHMDMESIESLNMALEKY---EGTL----IFVSHD 494 (530)
T ss_pred HcCCChhHhcCcccccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEE----EEEeCC
Confidence 566531 1111222223348999999999999 99999999996665565566666666664 4588 999999
Q ss_pred hhhhhcCCcceeEeccchhh-HHhhh
Q 030541 144 CIRFRTLPPCIVCFCCTHTV-VQRAY 168 (175)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~-~~~~~ 168 (175)
.+++..+|++++++..+..+ ...++
T Consensus 495 ~~~~~~~~d~i~~l~~g~i~~~~g~~ 520 (530)
T PRK15064 495 REFVSSLATRIIEITPDGVVDFSGTY 520 (530)
T ss_pred HHHHHHhCCEEEEEECCeEEEcCCCH
Confidence 99999999999999988765 44444
No 279
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.94 E-value=2.3e-26 Score=197.82 Aligned_cols=159 Identities=17% Similarity=0.172 Sum_probs=114.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc-ccceEEEeecCccc--------ccCCCCcc---------CCccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAA--------ENFDYPVA---------MDIRELI----- 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-~~G~I~i~g~~~~~--------~~~~~~~~---------~~~~~~~----- 57 (175)
+||+++|+||||||||||+|+|+|+.++ ++|+|.++|.+... ..+++.+. .+..+++
T Consensus 285 ~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~ 364 (490)
T PRK10938 285 PGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFF 364 (490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccc
Confidence 5999999999999999999999999876 79999999865311 12232221 0111110
Q ss_pred ---------------cHHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHH
Q 030541 58 ---------------SLEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN 121 (175)
Q Consensus 58 ---------------~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~ 121 (175)
...++++.+++.. ........-+..++||..+++++.. +|++++||||+...+...+..+.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~~ 442 (490)
T PRK10938 365 DSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVK--HPTLLILDEPLQGLDPLNRQLVRR 442 (490)
T ss_pred cccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHHH
Confidence 0124455566543 2222222223348999999999999 999999999977766777788888
Q ss_pred HHHHHHhCCC-cEEEEeeeehhchhhhhc-CCcceeEeccchhhHH
Q 030541 122 FVDHLKSRNF-NVCAVYLLDSQVCIRFRT-LPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 122 ~l~~l~~~g~-tvli~~l~~sH~~~~~~~-~~~~~~~~~~~~~~~~ 165 (175)
+|+++++++. || +++||+++++.+ ++++++++..|..+..
T Consensus 443 ~L~~l~~~~~~tv----iivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 443 FVDVLISEGETQL----LFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHhcCCcEE----EEEecchhhhhhhhheeEEEecCCceEEe
Confidence 9999977654 68 999999999988 5899999998875543
No 280
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.7e-26 Score=204.11 Aligned_cols=163 Identities=15% Similarity=0.077 Sum_probs=113.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCc---ccc-cC-------CCCcc-------CCc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAE-NF-------DYPVA-------MDI--------- 53 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~---~~~-~~-------~~~~~-------~~~--------- 53 (175)
+|+++||+||||||||||+|+|+|+++|++|+|.++|... ..+ .. .+.+. ++.
T Consensus 26 ~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~ 105 (638)
T PRK10636 26 PGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERN 105 (638)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccC
Confidence 5999999999999999999999999999999999977431 001 00 00000 000
Q ss_pred --------c---cc-------ccHHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccc
Q 030541 54 --------R---EL-------ISLEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFT 114 (175)
Q Consensus 54 --------~---~~-------~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~ 114 (175)
. +. -....+++.+++.. ........-+.++++|..|+++++. +|++||||||+...+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~--~P~lLLLDEPtn~LD~~ 183 (638)
T PRK10636 106 DGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALIC--RSDLLLLDEPTNHLDLD 183 (638)
T ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHcc--CCCEEEEcCCCCcCCHH
Confidence 0 00 01223455555542 1111222223348999999999999 99999999996666666
Q ss_pred cchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhh-HHhhhhccc
Q 030541 115 HVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV-VQRAYSFLF 172 (175)
Q Consensus 115 ~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 172 (175)
...++.++|+++ +.|| +++||+.+++..+|++++.+..+..+ +.++|..|.
T Consensus 184 ~~~~L~~~L~~~---~~tv----iivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 184 AVIWLEKWLKSY---QGTL----ILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred HHHHHHHHHHhC---CCeE----EEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHH
Confidence 666776676654 5688 99999999999999999999988764 566666553
No 281
>PLN03211 ABC transporter G-25; Provisional
Probab=99.94 E-value=1.5e-26 Score=204.80 Aligned_cols=161 Identities=19% Similarity=0.165 Sum_probs=119.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccc--cceEEEeecCccc---ccCCCC-------ccCCcccccc----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAA---ENFDYP-------VAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~--~G~I~i~g~~~~~---~~~~~~-------~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+++|+|..+|+ +|+|.++|.+... +.+++. +.+++++++.
T Consensus 93 ~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~ 172 (659)
T PLN03211 93 PGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS 172 (659)
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCC
Confidence 59999999999999999999999999885 8999999976421 122222 2233333321
Q ss_pred ---------HHHHHHHhCCCCCCch-----hhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHH
Q 030541 59 ---------LEDVMEELGLGPNGGL-----IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..++++.+++...... ....-+.+|++|..+++++.. +|++++||||+...+......+.++++
T Consensus 173 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~--~P~iLlLDEPtsgLD~~~~~~l~~~L~ 250 (659)
T PLN03211 173 LTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI--NPSLLILDEPTSGLDATAAYRLVLTLG 250 (659)
T ss_pred CCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHh--CCCEEEEeCCCCCcCHHHHHHHHHHHH
Confidence 1234444555332110 011123348999999999999 999999999966666767778888999
Q ss_pred HHHhCCCcEEEEeeeehhchh-hhhcCCcceeEeccchhhHHhh
Q 030541 125 HLKSRNFNVCAVYLLDSQVCI-RFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 125 ~l~~~g~tvli~~l~~sH~~~-~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++++|+|| +++||+++ ++.+.+|+++++..|+.+++++
T Consensus 251 ~l~~~g~Tv----I~~sH~~~~~i~~~~D~iilL~~G~iv~~G~ 290 (659)
T PLN03211 251 SLAQKGKTI----VTSMHQPSSRVYQMFDSVLVLSEGRCLFFGK 290 (659)
T ss_pred HHHhCCCEE----EEEecCCCHHHHHhhceEEEecCCcEEEECC
Confidence 998789999 99999998 5889999999999998887654
No 282
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.3e-26 Score=186.15 Aligned_cols=166 Identities=16% Similarity=0.154 Sum_probs=119.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc-c----ccceEEEeecCccc-----------ccCCCC---------ccCCccc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-T----VRRTMHIVNLDPAA-----------ENFDYP---------VAMDIRE 55 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-~----~~G~I~i~g~~~~~-----------~~~~~~---------~~~~~~~ 55 (175)
+||++||+|+|||||||+.++|.|+++ | .+|+|.++|.++.. ..+++. |.+++.+
T Consensus 30 ~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~ 109 (316)
T COG0444 30 KGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGD 109 (316)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHH
Confidence 599999999999999999999999997 3 57999999986421 122222 2222222
Q ss_pred ccc------------------HHHHHHHhCCCCCCc-hhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccc
Q 030541 56 LIS------------------LEDVMEELGLGPNGG-LIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFT 114 (175)
Q Consensus 56 ~~~------------------~~~~~~~~~l~~~~~-~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~ 114 (175)
++. ..+.++.+++..... ......++| ++||..+|.+++. +|++||.|||+...+..
T Consensus 110 Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~--~P~LlIADEPTTALDvt 187 (316)
T COG0444 110 QIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALAL--NPKLLIADEPTTALDVT 187 (316)
T ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhC--CCCEEEeCCCcchhhHH
Confidence 211 123445555554311 111122344 8999999999999 99999999994444444
Q ss_pred cchhHHHHHHHHHh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhhhccc
Q 030541 115 HVPVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYSFLF 172 (175)
Q Consensus 115 ~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (175)
.+..+.++|+++++ .|.|+ +++|||+..+.++||++.+|.+|..|=+....-.|
T Consensus 188 ~QaqIl~Ll~~l~~e~~~ai----ilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 188 VQAQILDLLKELQREKGTAL----ILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred HHHHHHHHHHHHHHhcCCEE----EEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHh
Confidence 45667779999875 69999 99999999999999999999999998777765444
No 283
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=4.9e-26 Score=168.44 Aligned_cols=155 Identities=16% Similarity=0.117 Sum_probs=113.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcc-----------cccCCCCc-------cCCcccccc----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDYPV-------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----------~~~~~~~~-------~~~~~~~~~---- 58 (175)
.||.++|+||+|||||||+-+++|+..|++|+|++.|++.. ..++++++ .++..+++.
T Consensus 35 ~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPle 114 (228)
T COG4181 35 RGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLE 114 (228)
T ss_pred CCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhh
Confidence 48999999999999999999999999999999999998642 23444443 333222221
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
....++.++++.+.......-+-.++||.+++|++.. .|++|+.|||+...+...-+.+..++..+
T Consensus 115 L~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~--~P~vLfADEPTGNLD~~Tg~~iaDLlF~l 192 (228)
T COG4181 115 LRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAG--RPDVLFADEPTGNLDRATGDKIADLLFAL 192 (228)
T ss_pred hcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcC--CCCEEeccCCCCCcchhHHHHHHHHHHHH
Confidence 2345556666655433322223348899999999999 99999999996655555555666688777
Q ss_pred H-hCCCcEEEEeeeehhchhhhhcCCcceeEeccchh
Q 030541 127 K-SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHT 162 (175)
Q Consensus 127 ~-~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~ 162 (175)
+ +.|.|. +++|||... +..|+|.+-+.+|+-
T Consensus 193 nre~G~Tl----VlVTHD~~L-A~Rc~R~~r~~~G~l 224 (228)
T COG4181 193 NRERGTTL----VLVTHDPQL-AARCDRQLRLRSGRL 224 (228)
T ss_pred hhhcCceE----EEEeCCHHH-HHhhhheeeeeccee
Confidence 4 679999 999999764 577898888887764
No 284
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.94 E-value=2e-26 Score=196.72 Aligned_cols=162 Identities=18% Similarity=0.130 Sum_probs=122.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccc----cceEEEeecCccc-----------ccCC---------CCccCCcccc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV----RRTMHIVNLDPAA-----------ENFD---------YPVAMDIREL 56 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~----~G~I~i~g~~~~~-----------~~~~---------~~~~~~~~~~ 56 (175)
+||++||+|++||||||+.++|.|++++. +|+|.++|.+... ..++ +.|.+++.++
T Consensus 34 ~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Q 113 (539)
T COG1123 34 PGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQ 113 (539)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHH
Confidence 59999999999999999999999999987 8999999976321 1222 2232333332
Q ss_pred cc-----------------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccch
Q 030541 57 IS-----------------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVP 117 (175)
Q Consensus 57 ~~-----------------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~ 117 (175)
+. ..++++.+++...........++| |+||..+|++++. +|++||+|||+...+..-..
T Consensus 114 i~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~--~P~LLIaDEPTTaLDvt~q~ 191 (539)
T COG1123 114 IREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALAL--KPKLLIADEPTTALDVTTQA 191 (539)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhC--CCCEEEECCCccccCHHHHH
Confidence 22 245677777776543311223344 9999999999999 99999999994444444455
Q ss_pred hHHHHHHHHH-hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 118 VLRNFVDHLK-SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 118 ~~~~~l~~l~-~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
.+.++|++++ +.|.++ +++||+++.++++||++++|.+|..|-.+..
T Consensus 192 qIL~llk~l~~e~g~a~----l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~ 239 (539)
T COG1123 192 QILDLLKDLQRELGMAV----LFITHDLGVVAELADRVVVMYKGEIVETGPT 239 (539)
T ss_pred HHHHHHHHHHHHcCcEE----EEEcCCHHHHHHhcCeEEEEECCEEEEecCH
Confidence 6677999986 569999 9999999999999999999999988765543
No 285
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.8e-26 Score=204.05 Aligned_cols=160 Identities=13% Similarity=-0.000 Sum_probs=113.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeec-C----cccccCCCCccCCccccc----------cHHHHHHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-D----PAAENFDYPVAMDIRELI----------SLEDVMEE 65 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~-~----~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 65 (175)
+|+++||+||||||||||+|+|+|+.+|++|+|.+++. . ++.......+..++.+.+ ...++++.
T Consensus 337 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 416 (638)
T PRK10636 337 PGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGG 416 (638)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHH
Confidence 49999999999999999999999999999999998631 1 111000111111111111 12345566
Q ss_pred hCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhch
Q 030541 66 LGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVC 144 (175)
Q Consensus 66 ~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~ 144 (175)
+++... .......-+.++++|..|++++.. +|++||||||+...+......+.++|.++ +.|| +++||+.
T Consensus 417 ~~l~~~~~~~~~~~LSgGekqRl~La~~l~~--~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~gtv----i~vSHd~ 487 (638)
T PRK10636 417 FGFQGDKVTEETRRFSGGEKARLVLALIVWQ--RPNLLLLDEPTNHLDLDMRQALTEALIDF---EGAL----VVVSHDR 487 (638)
T ss_pred cCCChhHhcCchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCeE----EEEeCCH
Confidence 666421 112222223348999999999999 99999999997766666677777777776 3489 9999999
Q ss_pred hhhhcCCcceeEeccchhh-HHhhhh
Q 030541 145 IRFRTLPPCIVCFCCTHTV-VQRAYS 169 (175)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~-~~~~~~ 169 (175)
+++..+|++++++..|..+ +.++|.
T Consensus 488 ~~~~~~~d~i~~l~~G~i~~~~g~~~ 513 (638)
T PRK10636 488 HLLRSTTDDLYLVHDGKVEPFDGDLE 513 (638)
T ss_pred HHHHHhCCEEEEEECCEEEEcCCCHH
Confidence 9999999999999988765 444443
No 286
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.8e-26 Score=183.18 Aligned_cols=159 Identities=15% Similarity=0.143 Sum_probs=110.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc-----ccceEEEeecCcc-----------cccCCCCccC------Ccccccc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA-----------AENFDYPVAM------DIRELIS 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~-----------~~~~~~~~~~------~~~~~~~ 58 (175)
+||+++|+|+||||||||+++|+|+.+| ++|+|.++|.+.. ...+++.+.. ++.+++.
T Consensus 41 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~ 120 (265)
T PRK14252 41 EKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVA 120 (265)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcchHHHHHH
Confidence 5999999999999999999999999875 7999999876431 1122333311 2222111
Q ss_pred H-----------------HHHHHHhCCCCCC--chhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccch
Q 030541 59 L-----------------EDVMEELGLGPNG--GLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVP 117 (175)
Q Consensus 59 ~-----------------~~~~~~~~l~~~~--~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~ 117 (175)
. ...++.+++.... ....... +..++++..+++++.. +|++++||||....+....+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~gLD~~~~~ 198 (265)
T PRK14252 121 YGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALAT--DPEILLFDEPTSALDPIATA 198 (265)
T ss_pred hHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHH
Confidence 0 0111112221000 0000111 2237899999999999 99999999996666666777
Q ss_pred hHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 118 VLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 118 ~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.+.++++++++ +.|| +++||+++++.++||+++++..+..+.++
T Consensus 199 ~l~~~l~~l~~-~~ti----iivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 199 SIEELISDLKN-KVTI----LIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred HHHHHHHHHHh-CCEE----EEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 88889988865 6889 99999999999999999999887765443
No 287
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.8e-26 Score=187.84 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=108.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc-----cccceEEEeecCccc---------ccCCCCccC------CccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVAM------DIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~~------~~~~~~~~- 59 (175)
+||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. ..++|.+.. ++.+++..
T Consensus 70 ~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~ 149 (305)
T PRK14264 70 EKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYG 149 (305)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccccHHHHHHhH
Confidence 599999999999999999999999986 689999999876421 123333311 11111110
Q ss_pred ----------------------------HHHHHHhCCCCCC--chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCC
Q 030541 60 ----------------------------EDVMEELGLGPNG--GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCP 107 (175)
Q Consensus 60 ----------------------------~~~~~~~~l~~~~--~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP 107 (175)
.++++.+++.... ........+ .+++|..+++++.. +|+++|||||
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lLLLDEP 227 (305)
T PRK14264 150 PRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAV--DPEVILMDEP 227 (305)
T ss_pred HhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhc--CCCEEEEeCC
Confidence 0111112221000 000011122 37899999999999 9999999999
Q ss_pred CcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcce-eEeccchhhHH
Q 030541 108 GQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCI-VCFCCTHTVVQ 165 (175)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~-~~~~~~~~~~~ 165 (175)
....+......+.++|+++++ +.|| +++||+++++..+|+++ +++..+..+.+
T Consensus 228 tsgLD~~~~~~l~~~L~~~~~-~~ti----iivtH~~~~i~~~~d~i~~~l~~G~i~~~ 281 (305)
T PRK14264 228 ASALDPIATSKIEDLIEELAE-EYTV----VVVTHNMQQAARISDQTAVFLTGGELVEY 281 (305)
T ss_pred cccCCHHHHHHHHHHHHHHhc-CCEE----EEEEcCHHHHHHhcCEEEEEecCCEEEEe
Confidence 666666677788889999876 4788 99999999999999986 56777766544
No 288
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.3e-26 Score=175.23 Aligned_cols=153 Identities=13% Similarity=0.130 Sum_probs=105.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccc-----cceEEEeecCcccc---------cCCCCccCCccccccHHHHHHHh
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAAE---------NFDYPVAMDIRELISLEDVMEEL 66 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~-----~G~I~i~g~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 66 (175)
+++++++|||+|||||||+|++..+.... +|+|.++|+++... .++.++ +-...|+ .++.+++
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVF--QkPnPFp-~SIydNV 108 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVF--QKPNPFP-MSIYDNV 108 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeec--cCCCCCC-chHHHHH
Confidence 47899999999999999999999987754 49999999886442 233332 2222222 2222222
Q ss_pred CCCCCC--------------------chh-------hhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccch
Q 030541 67 GLGPNG--------------------GLI-------YCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVP 117 (175)
Q Consensus 67 ~l~~~~--------------------~~~-------~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~ 117 (175)
.++.+. .|. .... +..|+||..+||+++- +|++|+||||+...+.-...
T Consensus 109 ayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv--~PeVlLmDEPtSALDPIsT~ 186 (253)
T COG1117 109 AYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAV--KPEVLLMDEPTSALDPISTL 186 (253)
T ss_pred HHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhc--CCcEEEecCcccccCchhHH
Confidence 222110 000 0111 2238899999999999 99999999994444444455
Q ss_pred hHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 118 VLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 118 ~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
.+.+++.+++ +.-|| +++||+|..+.+.+|..+++..|.-|
T Consensus 187 kIEeLi~eLk-~~yTI----viVTHnmqQAaRvSD~taFf~~G~Lv 227 (253)
T COG1117 187 KIEELITELK-KKYTI----VIVTHNMQQAARVSDYTAFFYLGELV 227 (253)
T ss_pred HHHHHHHHHH-hccEE----EEEeCCHHHHHHHhHhhhhhcccEEE
Confidence 6778899997 46899 99999999999999977776665443
No 289
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.5e-26 Score=187.88 Aligned_cols=161 Identities=13% Similarity=0.146 Sum_probs=114.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc-----cccceEEEeecCccc---------ccCCCCc------cCCccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPV------AMDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~------~~~~~~~~~~- 59 (175)
+||++||+||||||||||+++|+|+.+ |++|+|.++|.++.. ..+++.+ ..+.++++..
T Consensus 107 ~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~ 186 (329)
T PRK14257 107 RNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYG 186 (329)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhH
Confidence 599999999999999999999999986 579999999987631 1223222 1233332221
Q ss_pred ----------------HHHHHHhCCCCCC----chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 60 ----------------EDVMEELGLGPNG----GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..+++..++.... ......-+.+++||..|+|++.. +|++++||||....+......+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~--~p~IlLLDEPts~LD~~~~~~i 264 (329)
T PRK14257 187 PRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIAL--EPEVLLMDEPTSALDPIATAKI 264 (329)
T ss_pred HHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHH
Confidence 1112223321110 00001112348999999999999 9999999999555556666678
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
.+.++++.+ +.|+ +++||+++.+.++||++++|..|..+-+++.
T Consensus 265 ~~~i~~l~~-~~Ti----i~iTH~l~~i~~~~Driivl~~G~i~e~g~~ 308 (329)
T PRK14257 265 EELILELKK-KYSI----IIVTHSMAQAQRISDETVFFYQGWIEEAGET 308 (329)
T ss_pred HHHHHHHhc-CCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 888888865 6899 9999999999999999999998877655543
No 290
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.93 E-value=2.9e-26 Score=203.20 Aligned_cols=159 Identities=18% Similarity=0.134 Sum_probs=111.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc------cCCcccccc-------HH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS-------LE 60 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~-------~~ 60 (175)
.||.+||+|+||||||||+|+++|+++|++|+|.+||.|... +.+++++ .-+.++++. .+
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e 577 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDE 577 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHH
Confidence 399999999999999999999999999999999999998532 3344333 113334332 11
Q ss_pred HH------------HHHhCCCCCCchhh--hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 61 DV------------MEELGLGPNGGLIY--CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 61 ~~------------~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
++ ..++.++.+-.... ..-+.+||||.+|||++.+ +|++|+||||+...+......+.+-|.++
T Consensus 578 ~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~--~P~ILlLDEaTSaLD~~sE~~I~~~L~~~ 655 (709)
T COG2274 578 EIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS--KPKILLLDEATSALDPETEAIILQNLLQI 655 (709)
T ss_pred HHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc--CCCEEEEeCcccccCHhHHHHHHHHHHHH
Confidence 11 22221111100000 0113349999999999999 99999999994444444444555566665
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
. +|+|+ ++++|++..+ +.+|++++|+.|..+-+++
T Consensus 656 ~-~~~T~----I~IaHRl~ti-~~adrIiVl~~Gkiv~~gs 690 (709)
T COG2274 656 L-QGRTV----IIIAHRLSTI-RSADRIIVLDQGKIVEQGS 690 (709)
T ss_pred h-cCCeE----EEEEccchHh-hhccEEEEccCCceeccCC
Confidence 3 47999 9999998866 7889999999999887765
No 291
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.93 E-value=5.6e-26 Score=198.02 Aligned_cols=159 Identities=16% Similarity=0.043 Sum_probs=109.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecC-c--ccccCCCCccCCccccccH------------------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENFDYPVAMDIRELISL------------------ 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~--~~~~~~~~~~~~~~~~~~~------------------ 59 (175)
+|++++|+||||||||||+|+|+|+.+|++|+|.+++.. + ..+.....+.+++.+++..
T Consensus 30 ~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~ 109 (552)
T TIGR03719 30 PGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAK 109 (552)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999986421 1 1122222222333333211
Q ss_pred ----------------------------------HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEe
Q 030541 60 ----------------------------------EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFD 105 (175)
Q Consensus 60 ----------------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLD 105 (175)
..+++.+++.. .......-+.++++|..++++++. +|+++|||
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkqrv~la~al~~--~p~lLLLD 186 (552)
T TIGR03719 110 FAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDADVTKLSGGERRRVALCRLLLS--KPDMLLLD 186 (552)
T ss_pred hccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCchhhcCHHHHHHHHHHHHHhc--CCCEEEEc
Confidence 01122223321 111111223348999999999999 99999999
Q ss_pred CCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhh-HHhhhh
Q 030541 106 CPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV-VQRAYS 169 (175)
Q Consensus 106 EP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 169 (175)
||+...+......+.++|+++ +.|| +++||+++.+..+||+++++..+..+ ++++|.
T Consensus 187 EPt~~LD~~~~~~l~~~L~~~---~~tv----IiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~ 244 (552)
T TIGR03719 187 EPTNHLDAESVAWLEQHLQEY---PGTV----VAVTHDRYFLDNVAGWILELDRGRGIPWEGNYS 244 (552)
T ss_pred CCCCCCChHHHHHHHHHHHhC---CCeE----EEEeCCHHHHHhhcCeEEEEECCEEEEecCCHH
Confidence 996666666666666676654 3588 99999999999999999999988754 455544
No 292
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.93 E-value=4.2e-26 Score=183.21 Aligned_cols=156 Identities=17% Similarity=0.111 Sum_probs=108.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCcc------CCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA------MDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~------~~~~~~~~--------- 58 (175)
+||+++|+|+||||||||+++|+|+++ ++|+|.++|.++.. ..+++.+. .++.+++.
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~ 107 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEE 107 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhccCCCHHH
Confidence 599999999999999999999999998 79999999976421 12333331 12222221
Q ss_pred HHHHHHHhCCCCCCchhhh-----------HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 LEDVMEELGLGPNGGLIYC-----------MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
....++.+++......... .-+.+++|+..++|+++. +|++++||||....+......+.+.++++.
T Consensus 108 ~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~--~p~illlDEpts~LD~~~~~~l~~~l~~~~ 185 (275)
T cd03289 108 IWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLS--KAKILLLDEPSAHLDPITYQVIRKTLKQAF 185 (275)
T ss_pred HHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence 1122333333211100000 023348899999999999 999999999966655666667777888764
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+++|| +++||+++.+.. ||++++|+.+..+..
T Consensus 186 -~~~ti----i~isH~~~~i~~-~dri~vl~~G~i~~~ 217 (275)
T cd03289 186 -ADCTV----ILSEHRIEAMLE-CQRFLVIEENKVRQY 217 (275)
T ss_pred -CCCEE----EEEECCHHHHHh-CCEEEEecCCeEeec
Confidence 47899 999999998875 999999987766543
No 293
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.93 E-value=6.3e-26 Score=200.53 Aligned_cols=161 Identities=16% Similarity=0.104 Sum_probs=112.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCc-----cc---ccCCCCccC------------C--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----AA---ENFDYPVAM------------D-------- 52 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~-----~~---~~~~~~~~~------------~-------- 52 (175)
+|+++||+||||||||||+|+|+|+++|++|+|.++|... +. ....+.+.. +
T Consensus 28 ~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 107 (635)
T PRK11147 28 DNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHL 107 (635)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999976321 00 000110000 0
Q ss_pred -----ccccc--------------------cHHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCC
Q 030541 53 -----IRELI--------------------SLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCP 107 (175)
Q Consensus 53 -----~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP 107 (175)
..+++ ....+++.+++.. ......-+..+++|..|++++.. +|++||||||
T Consensus 108 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~--~~~~~~LSgGekqRv~LAraL~~--~P~lLLLDEP 183 (635)
T PRK11147 108 VETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP--DAALSSLSGGWLRKAALGRALVS--NPDVLLLDEP 183 (635)
T ss_pred hccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC--CCchhhcCHHHHHHHHHHHHHhc--CCCEEEEcCC
Confidence 00000 0123344455432 11222223348999999999999 9999999999
Q ss_pred CcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhh-HHhhhhccc
Q 030541 108 GQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV-VQRAYSFLF 172 (175)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 172 (175)
+...+....+++.++|+++ +.|| +++||+.+++.++|++++.+..+..+ +.++|+.|.
T Consensus 184 t~~LD~~~~~~L~~~L~~~---~~tv----livsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 184 TNHLDIETIEWLEGFLKTF---QGSI----IFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQYL 242 (635)
T ss_pred CCccCHHHHHHHHHHHHhC---CCEE----EEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHHH
Confidence 6666666677777777776 3588 99999999999999999999988775 456665543
No 294
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=7.7e-26 Score=168.73 Aligned_cols=158 Identities=13% Similarity=0.116 Sum_probs=114.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccc--------------------cCCCCccCCccccccH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--------------------NFDYPVAMDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~--------------------~~~~~~~~~~~~~~~~- 59 (175)
+|+++.|||.+||||||++|||.=+..|+.|.|.++|..++-. ..+.++ +.......
T Consensus 31 ~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVF--Q~FNLWsHm 108 (256)
T COG4598 31 AGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVF--QHFNLWSHM 108 (256)
T ss_pred CCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhh--hhcchhHHH
Confidence 5999999999999999999999999999999999998764321 011111 11111112
Q ss_pred -------------------------HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccc
Q 030541 60 -------------------------EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFT 114 (175)
Q Consensus 60 -------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~ 114 (175)
...+..+++..+.......-+-.|+||.+++|+++- +|+++++|||+...+..
T Consensus 109 tvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLam--eP~vmLFDEPTSALDPE 186 (256)
T COG4598 109 TVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAM--EPEVMLFDEPTSALDPE 186 (256)
T ss_pred HHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhc--CCceEeecCCcccCCHH
Confidence 233444455443322222223348899999999999 99999999994443344
Q ss_pred cchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 115 HVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 115 ~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
-.-.+.+++++++++|+|. +++||.|..+.+.++.+++++.|.+--|+
T Consensus 187 lVgEVLkv~~~LAeEgrTM----v~VTHEM~FAR~Vss~v~fLh~G~iEE~G 234 (256)
T COG4598 187 LVGEVLKVMQDLAEEGRTM----VVVTHEMGFARDVSSHVIFLHQGKIEEEG 234 (256)
T ss_pred HHHHHHHHHHHHHHhCCeE----EEEeeehhHHHhhhhheEEeecceecccC
Confidence 3345667899999999999 99999999999999999999988764443
No 295
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.93 E-value=9.8e-26 Score=196.15 Aligned_cols=161 Identities=20% Similarity=0.129 Sum_probs=112.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc------cCCcccccc-------H-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS-------L- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~-------~- 59 (175)
+|+.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+++.+ .-+.++++. .
T Consensus 343 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~ 422 (544)
T TIGR01842 343 AGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPE 422 (544)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHH
Confidence 599999999999999999999999999999999999976432 1222222 112222221 1
Q ss_pred -----------HHHHHHhCCCCC--CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 60 -----------EDVMEELGLGPN--GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 60 -----------~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
.+.++.+.-+.. .......-+..|+||..++|++.+ +|++++||||+...+....+.+.+.++++
T Consensus 423 ~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~--~~~ililDEpts~LD~~~~~~i~~~l~~~ 500 (544)
T TIGR01842 423 KIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG--DPKLVVLDEPNSNLDEEGEQALANAIKAL 500 (544)
T ss_pred HHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 111222211101 000001123348999999999999 99999999996555566666777788887
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
.++++|+ +++||+++.+ +.+|+++.++.|..+.+++.
T Consensus 501 ~~~~~tv----i~ith~~~~~-~~~d~i~~l~~G~i~~~g~~ 537 (544)
T TIGR01842 501 KARGITV----VVITHRPSLL-GCVDKILVLQDGRIARFGER 537 (544)
T ss_pred hhCCCEE----EEEeCCHHHH-HhCCEEEEEECCEEEeeCCH
Confidence 6568999 9999999865 67999999999888766543
No 296
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.93 E-value=7.6e-26 Score=200.02 Aligned_cols=161 Identities=14% Similarity=0.089 Sum_probs=110.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcc----ccc-CCCCccCCcccccc--------------HHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AEN-FDYPVAMDIRELIS--------------LED 61 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~----~~~-~~~~~~~~~~~~~~--------------~~~ 61 (175)
+|++++|+||||||||||+|+|+|+.+|++|+|.+ |.+.. .+. ..+.+..++.+++. ..+
T Consensus 344 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 422 (635)
T PRK11147 344 RGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLG 422 (635)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHH
Confidence 59999999999999999999999999999999998 43311 111 11222223332221 123
Q ss_pred HHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeee
Q 030541 62 VMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (175)
Q Consensus 62 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~ 140 (175)
+++.+++... .......-+.++++|..+++++.. +|++||||||+...+....+.+.++++++ +.|| +++
T Consensus 423 ~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~--~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tv----i~v 493 (635)
T PRK11147 423 YLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLK--PSNLLILDEPTNDLDVETLELLEELLDSY---QGTV----LLV 493 (635)
T ss_pred HHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeE----EEE
Confidence 3444444321 111111223348999999999999 99999999996665555555666666554 4589 999
Q ss_pred hhchhhhhcCCcceeEec--cchhhHHhhhhcc
Q 030541 141 SQVCIRFRTLPPCIVCFC--CTHTVVQRAYSFL 171 (175)
Q Consensus 141 sH~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 171 (175)
||+.+++..+|++++++. +..+.+.++|.-|
T Consensus 494 SHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 494 SHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred ECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 999999999999999996 3445556666655
No 297
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.93 E-value=1.1e-25 Score=197.35 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=109.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+|+.++|+||||||||||+++|+|++ |++|+|.++|.++.. +.+++.+ .-+.++++.
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~e 453 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDE 453 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHH
Confidence 59999999999999999999999999 899999999987532 1233332 223333332
Q ss_pred -HHHHHHHhCCC---------CC--CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 -LEDVMEELGLG---------PN--GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l~---------~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++..++. .+ ....-..-+.+|+||..|||++.+ +|+++|||||+...+......+.+.+.++
T Consensus 454 ei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~--~~~IliLDE~TSaLD~~te~~i~~~l~~~ 531 (588)
T PRK11174 454 QLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQ--PCQLLLLDEPTASLDAHSEQLVMQALNAA 531 (588)
T ss_pred HHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 11122221111 11 000000123349999999999999 99999999995555555555666677776
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
. +++|+ +++||+++.+. .+|+++.++.|..+-+++
T Consensus 532 ~-~~~Tv----IiItHrl~~i~-~aD~Iivl~~G~i~e~G~ 566 (588)
T PRK11174 532 S-RRQTT----LMVTHQLEDLA-QWDQIWVMQDGQIVQQGD 566 (588)
T ss_pred h-CCCEE----EEEecChHHHH-hCCEEEEEeCCeEeecCC
Confidence 4 57899 99999998764 599999999988775554
No 298
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.93 E-value=1.1e-25 Score=181.33 Aligned_cols=156 Identities=15% Similarity=-0.000 Sum_probs=102.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecC-cccccCCCCccCCcccccc---------HHHHHHHhCCCC
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLGP 70 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~ 70 (175)
+||+++|+|+||||||||+++|+|+++|++|+|.++|.- ...+...+.+ .++.+++. ....++..++..
T Consensus 62 ~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~ 140 (282)
T cd03291 62 KGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP-GTIKENIIFGVSYDEYRYKSVVKACQLEE 140 (282)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccc-cCHHHHhhcccccCHHHHHHHHHHhCCHH
Confidence 599999999999999999999999999999999997621 1111111111 12222211 011222222211
Q ss_pred CC------c-----hhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHH-HHHHHhCCCcEEEEee
Q 030541 71 NG------G-----LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF-VDHLKSRNFNVCAVYL 138 (175)
Q Consensus 71 ~~------~-----~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~-l~~l~~~g~tvli~~l 138 (175)
.. . .....-+..++++..+++++.. +|+++|||||....+......+.+. ++.++ ++.|| +
T Consensus 141 ~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~--~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tI----i 213 (282)
T cd03291 141 DITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTR----I 213 (282)
T ss_pred HHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEE----E
Confidence 00 0 0001123348899999999999 9999999999555445545555443 44554 47899 9
Q ss_pred eehhchhhhhcCCcceeEeccchhhHH
Q 030541 139 LDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
++||+++++ ..|+++++++.+..+..
T Consensus 214 iisH~~~~~-~~~d~i~~l~~G~i~~~ 239 (282)
T cd03291 214 LVTSKMEHL-KKADKILILHEGSSYFY 239 (282)
T ss_pred EEeCChHHH-HhCCEEEEEECCEEEEE
Confidence 999999998 57999999988876543
No 299
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.93 E-value=8.7e-26 Score=194.64 Aligned_cols=160 Identities=17% Similarity=0.128 Sum_probs=117.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeec-Cc--ccccCCCCccCCccccc--------------------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DP--AAENFDYPVAMDIRELI-------------------- 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~-~~--~~~~~~~~~~~~~~~~~-------------------- 57 (175)
+|+.+||||+||||||||+|+|+|...|++|+|...+. .+ -.+........++.+.+
T Consensus 28 ~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~ 107 (530)
T COG0488 28 PGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYAL 107 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 49999999999999999999999999999999998652 11 11111111111111111
Q ss_pred --------------------------cHHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCc
Q 030541 58 --------------------------SLEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ 109 (175)
Q Consensus 58 --------------------------~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~ 109 (175)
....++..+++... ..+..++| ++.|..||+++.. +|++|+||||+.
T Consensus 108 ~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~---~~~~~~LSGG~r~Rv~LA~aL~~--~pDlLLLDEPTN 182 (530)
T COG0488 108 LADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE---DRPVSSLSGGWRRRVALARALLE--EPDLLLLDEPTN 182 (530)
T ss_pred cccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc---cCchhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCc
Confidence 01233344444443 12233444 8899999999999 999999999977
Q ss_pred ccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccc-hhhHHhhhhccc
Q 030541 110 IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT-HTVVQRAYSFLF 172 (175)
Q Consensus 110 ~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 172 (175)
..+..+..|+.+.|+++ +| |+ +++|||-....+.|++++-++.+ ...|.++|+.|.
T Consensus 183 HLD~~~i~WLe~~L~~~--~g-tv----iiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~ 239 (530)
T COG0488 183 HLDLESIEWLEDYLKRY--PG-TV----IVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYL 239 (530)
T ss_pred ccCHHHHHHHHHHHHhC--CC-cE----EEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHH
Confidence 77777777777777754 46 99 99999999999999999999997 678888888874
No 300
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.93 E-value=9.4e-26 Score=200.94 Aligned_cols=157 Identities=18% Similarity=0.131 Sum_probs=107.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.++|+|+||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ .-+.++++.
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~ 557 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDE 557 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHH
Confidence 599999999999999999999999999999999999987642 2233332 113333331
Q ss_pred HHHHHHHhCCCCCC-----chh----hh--HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 LEDVMEELGLGPNG-----GLI----YC--MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 ~~~~~~~~~l~~~~-----~~~----~~--~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++..++.... ... .. .-+.+|+||..++|++.+ +|++++||||+...+......+.+.++++
T Consensus 558 i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~--~p~iLiLDEpTS~LD~~te~~i~~~L~~~- 634 (686)
T TIGR03797 558 AWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVR--KPRILLFDEATSALDNRTQAIVSESLERL- 634 (686)
T ss_pred HHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHHHHHHHh-
Confidence 12223322221100 000 00 113349999999999999 99999999994444444444444445443
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++|+ +++||+++.+.. +|++++++.|..+-+++
T Consensus 635 --~~T~----IiItHr~~~i~~-~D~Iivl~~G~iv~~G~ 667 (686)
T TIGR03797 635 --KVTR----IVIAHRLSTIRN-ADRIYVLDAGRVVQQGT 667 (686)
T ss_pred --CCeE----EEEecChHHHHc-CCEEEEEECCEEEEECC
Confidence 6799 999999988755 99999999988775443
No 301
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.93 E-value=1.1e-25 Score=197.13 Aligned_cols=159 Identities=16% Similarity=0.081 Sum_probs=108.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.++|+|+||||||||+|+|+|+++|++|+|.++|.+... +.++|.+ .-+.++++.
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~ 447 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSR 447 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCH
Confidence 599999999999999999999999999999999999987532 2233333 112222211
Q ss_pred --HHHHHHHhCCCC---------CCchhh--hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHH
Q 030541 59 --LEDVMEELGLGP---------NGGLIY--CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 59 --~~~~~~~~~l~~---------~~~~~~--~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
..++++..++.. +-.... ..-+..|+||..++|++.+ +|++++||||+...+......+.+.+.+
T Consensus 448 ~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~--~~~ililDEptsaLD~~t~~~i~~~l~~ 525 (582)
T PRK11176 448 EQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR--DSPILILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred HHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh--CCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 111222222110 000000 0113348999999999999 9999999999555555555556666766
Q ss_pred HHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 126 LKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 126 l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+. +++|+ +++||+++.+ +.+|+++.++.|..+-+++
T Consensus 526 ~~-~~~tv----I~VtHr~~~~-~~~D~Ii~l~~g~i~e~g~ 561 (582)
T PRK11176 526 LQ-KNRTS----LVIAHRLSTI-EKADEILVVEDGEIVERGT 561 (582)
T ss_pred Hh-CCCEE----EEEecchHHH-HhCCEEEEEECCEEEEeCC
Confidence 63 46899 9999999766 5699999999887765443
No 302
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=1.1e-25 Score=196.28 Aligned_cols=160 Identities=15% Similarity=0.100 Sum_probs=112.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecC-c--ccccC-CCCccCCcccccc--------------HHHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENF-DYPVAMDIRELIS--------------LEDV 62 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~--~~~~~-~~~~~~~~~~~~~--------------~~~~ 62 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.+++.. + -.+.. .+.+.+++.+++. ...+
T Consensus 349 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 428 (556)
T PRK11819 349 PGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAY 428 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHH
Confidence 599999999999999999999999999999999984321 0 11111 2222233333221 1235
Q ss_pred HHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeeh
Q 030541 63 MEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (175)
Q Consensus 63 ~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~s 141 (175)
++.+++... .......-+.++++|..+++++.. +|++++||||+...+....+.+.++|+++ .+ || +++|
T Consensus 429 l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~-tv----i~vt 499 (556)
T PRK11819 429 VGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQ--GGNVLLLDEPTNDLDVETLRALEEALLEF--PG-CA----VVIS 499 (556)
T ss_pred HHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CC-eE----EEEE
Confidence 566666421 111222223448999999999999 99999999996666666677777777775 23 78 9999
Q ss_pred hchhhhhcCCcceeEecc-chhh-HHhhhh
Q 030541 142 QVCIRFRTLPPCIVCFCC-THTV-VQRAYS 169 (175)
Q Consensus 142 H~~~~~~~~~~~~~~~~~-~~~~-~~~~~~ 169 (175)
|+++++..+|+++++++. +..+ ..++|.
T Consensus 500 Hd~~~~~~~~d~i~~l~~~g~~~~~~g~~~ 529 (556)
T PRK11819 500 HDRWFLDRIATHILAFEGDSQVEWFEGNFQ 529 (556)
T ss_pred CCHHHHHHhCCEEEEEECCCeEEEecCCHH
Confidence 999999999999999985 4333 455544
No 303
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.93 E-value=8.3e-26 Score=201.93 Aligned_cols=157 Identities=13% Similarity=0.096 Sum_probs=106.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.++|+||||||||||+|+|+|+++|++|+|.++|.+... +.+++.+ .-+.++++.
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~ 583 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDA 583 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHH
Confidence 599999999999999999999999999999999999987532 2233332 123333332
Q ss_pred -HHHHHHHhCCCC---------CCchhh--hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 -LEDVMEELGLGP---------NGGLIY--CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l~~---------~~~~~~--~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++..++.. +..... ..-+.+|+||..++|++.+ +|++++||||+...+....+.+.+. +
T Consensus 584 ~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~--~p~iliLDEptS~LD~~te~~i~~~---l 658 (710)
T TIGR03796 584 DLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR--NPSILILDEATSALDPETEKIIDDN---L 658 (710)
T ss_pred HHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh--CCCEEEEECccccCCHHHHHHHHHH---H
Confidence 112222222211 000000 0112349999999999999 9999999999443333333333333 4
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++.++|+ +++||+++.+.. +|++++++.|..+-+++
T Consensus 659 ~~~~~T~----IiitHrl~~i~~-~D~Iivl~~G~i~~~G~ 694 (710)
T TIGR03796 659 RRRGCTC----IIVAHRLSTIRD-CDEIIVLERGKVVQRGT 694 (710)
T ss_pred HhcCCEE----EEEecCHHHHHh-CCEEEEEeCCEEEEecC
Confidence 4468999 999999988755 99999999988775443
No 304
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.92 E-value=1.9e-25 Score=197.89 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=118.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-----------ccCCCCc-------cCCcccccc----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPV-------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~-------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. +.+++.+ ..+..+++.
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 112 (648)
T PRK10535 33 AGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAV 112 (648)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHH
Confidence 499999999999999999999999999999999999976421 1222322 122222111
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..+++|..+++++.. +|++++||||....+....+.+.++++++
T Consensus 113 ~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~--~P~lLllDEP~~gLD~~s~~~l~~ll~~l 190 (648)
T PRK10535 113 YAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN--GGQVILADEPTGALDSHSGEEVMAILHQL 190 (648)
T ss_pred HcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 1233444444332211111123348899999999999 99999999997777777788888899998
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++|.|+ +++||+.+.+. .||+++.+..+..+.+..
T Consensus 191 ~~~g~ti----livsH~~~~~~-~~d~i~~l~~G~i~~~g~ 226 (648)
T PRK10535 191 RDRGHTV----IIVTHDPQVAA-QAERVIEIRDGEIVRNPP 226 (648)
T ss_pred HhcCCEE----EEECCCHHHHH-hCCEEEEEECCEEEeecC
Confidence 7779999 99999999875 699999999988775544
No 305
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.92 E-value=1.6e-25 Score=196.48 Aligned_cols=159 Identities=13% Similarity=0.034 Sum_probs=111.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.++|+|+||||||||+|+|+|+++|++|+|.++|.+... +.+++.+ .-+.++++.
T Consensus 366 ~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~ 445 (592)
T PRK10790 366 SRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQ 445 (592)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHH
Confidence 599999999999999999999999999999999999987532 2233332 112333221
Q ss_pred HHHHHHHhCCCC---------CCchhh--hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 LEDVMEELGLGP---------NGGLIY--CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 ~~~~~~~~~l~~---------~~~~~~--~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++..++.. +..... ..-+.+|+||..++|++.+ +|++++||||+...+....+.+.+.++++.
T Consensus 446 i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~--~~~illlDEpts~LD~~t~~~i~~~l~~~~ 523 (592)
T PRK10790 446 VWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ--TPQILILDEATANIDSGTEQAIQQALAAVR 523 (592)
T ss_pred HHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 122333322221 000000 0123349999999999999 999999999955555555666667777764
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+ ++|+ +++||+++.+. .+|+++.++.|..+-+++
T Consensus 524 ~-~~tv----IivtHr~~~l~-~~D~ii~l~~G~i~~~G~ 557 (592)
T PRK10790 524 E-HTTL----VVIAHRLSTIV-EADTILVLHRGQAVEQGT 557 (592)
T ss_pred C-CCEE----EEEecchHHHH-hCCEEEEEECCEEEEEcC
Confidence 4 6899 99999998775 589999999887765444
No 306
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.92 E-value=2e-25 Score=199.04 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=111.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCcc------CCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA------MDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~------~~~~~~~~--------- 58 (175)
+|+.++|+|+||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+. -+.++++.
T Consensus 482 ~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~ 561 (694)
T TIGR01846 482 PGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFE 561 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHH
Confidence 599999999999999999999999999999999999987532 22333331 12222221
Q ss_pred -HHHHHHHhCC---------CCCC--chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 -LEDVMEELGL---------GPNG--GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l---------~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++..++ +.+. ...-..-+.+|+||..++|++.+ +|++++||||+...+....+.+.+.++++
T Consensus 562 ~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~--~~~ililDEpts~LD~~~~~~i~~~l~~~ 639 (694)
T TIGR01846 562 HVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG--NPRILIFDEATSALDYESEALIMRNMREI 639 (694)
T ss_pred HHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 1111111111 1110 00001122348999999999999 99999999995555555566677777776
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
. +++|+ +++||+++.+.. +|+++.++.|..+-+++
T Consensus 640 ~-~~~t~----i~itH~~~~~~~-~d~ii~l~~G~i~~~g~ 674 (694)
T TIGR01846 640 C-RGRTV----IIIAHRLSTVRA-CDRIIVLEKGQIAESGR 674 (694)
T ss_pred h-CCCEE----EEEeCChHHHHh-CCEEEEEeCCEEEEeCC
Confidence 4 57899 999999998855 99999999998875544
No 307
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.92 E-value=2.1e-25 Score=195.23 Aligned_cols=159 Identities=16% Similarity=0.106 Sum_probs=113.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.+... +.+++.+ .-+.++++.
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~ 444 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDE 444 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHH
Confidence 599999999999999999999999999999999999987532 1233332 113333321
Q ss_pred -HHHHHHHhCCCCCCch----hh----h--HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 -LEDVMEELGLGPNGGL----IY----C--MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -~~~~~~~~~l~~~~~~----~~----~--~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
...+++..++...... .. . .-+..|+||..++|++.+ +|++++||||+...+....+.+.+.+.++.
T Consensus 445 ~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~--~~~ililDE~ts~lD~~t~~~i~~~l~~~~ 522 (574)
T PRK11160 445 ALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH--DAPLLLLDEPTEGLDAETERQILELLAEHA 522 (574)
T ss_pred HHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 1233333333221100 00 0 112348999999999999 999999999966555665666777777764
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++|+ +++||+++.+.. +|+++.++.|..+-+++
T Consensus 523 -~~~tv----iiitHr~~~~~~-~d~i~~l~~G~i~~~g~ 556 (574)
T PRK11160 523 -QNKTV----LMITHRLTGLEQ-FDRICVMDNGQIIEQGT 556 (574)
T ss_pred -CCCEE----EEEecChhHHHh-CCEEEEEeCCeEEEeCC
Confidence 47899 999999998865 89999999888776554
No 308
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.92 E-value=4.1e-25 Score=192.65 Aligned_cols=150 Identities=17% Similarity=0.079 Sum_probs=107.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecC-c--ccccC-CCCccCCcccccc--------------HHHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENF-DYPVAMDIRELIS--------------LEDV 62 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~--~~~~~-~~~~~~~~~~~~~--------------~~~~ 62 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.+++.. + -.+.. .+.+.+++.+++. ...+
T Consensus 347 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 426 (552)
T TIGR03719 347 PGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAY 426 (552)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHH
Confidence 499999999999999999999999999999999984321 0 11111 1222223332221 1245
Q ss_pred HHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeeh
Q 030541 63 MEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (175)
Q Consensus 63 ~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~s 141 (175)
++.+++... .......-+.++++|..+++++.. +|+++|||||+...+....+.+.++|+++ +.|| +++|
T Consensus 427 l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~~v----iivs 497 (552)
T TIGR03719 427 VGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKS--GGNVLLLDEPTNDLDVETLRALEEALLEF---AGCA----VVIS 497 (552)
T ss_pred HHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHHHHHHHC---CCeE----EEEe
Confidence 566666321 112222223448999999999999 99999999996666666677777777776 2378 9999
Q ss_pred hchhhhhcCCcceeEecc
Q 030541 142 QVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 142 H~~~~~~~~~~~~~~~~~ 159 (175)
|+++++..+|++++++..
T Consensus 498 Hd~~~~~~~~d~i~~l~~ 515 (552)
T TIGR03719 498 HDRWFLDRIATHILAFEG 515 (552)
T ss_pred CCHHHHHHhCCEEEEEEC
Confidence 999999999999999985
No 309
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.4e-25 Score=188.20 Aligned_cols=160 Identities=18% Similarity=0.104 Sum_probs=117.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCC------ccCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYP------VAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~------~~~~~~~~~~--------- 58 (175)
+|+.++|+|+||||||||++.|+|+.+|++|+|.++|.+.++ +++.|. +.-+.++++.
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e 425 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDE 425 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHH
Confidence 589999999999999999999999999999999999987543 223333 2224455542
Q ss_pred -HHHHHHHhCCCCCCch----hh------hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 -LEDVMEELGLGPNGGL----IY------CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -~~~~~~~~~l~~~~~~----~~------~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
...+++..++...... .. ..-+..|+||.+++|++.. +++++++|||+...+......+.+.+.++.
T Consensus 426 ~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~--~~~l~llDEpTA~LD~etE~~i~~~l~~l~ 503 (559)
T COG4988 426 EIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS--PASLLLLDEPTAHLDAETEQIILQALQELA 503 (559)
T ss_pred HHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC--CCCEEEecCCccCCCHhHHHHHHHHHHHHH
Confidence 2334444433322211 10 0123448999999999999 999999999977766776777777888886
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
+ ++|| +++||++..+. -+|++++++.|..+=++.+
T Consensus 504 ~-~ktv----l~itHrl~~~~-~~D~I~vld~G~l~~~g~~ 538 (559)
T COG4988 504 K-QKTV----LVITHRLEDAA-DADRIVVLDNGRLVEQGTH 538 (559)
T ss_pred h-CCeE----EEEEcChHHHh-cCCEEEEecCCceeccCCH
Confidence 5 4899 99999999874 5699999997776655443
No 310
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.92 E-value=2e-25 Score=199.01 Aligned_cols=157 Identities=18% Similarity=0.119 Sum_probs=111.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCccCCccccccHHHHHHHhCCCCCC-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNG- 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 72 (175)
+||.++|+|+||||||||+|+|+|+++|++|+|.++|.+... +.+++.+ +....|. .++.+++.++...
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~--Q~~~lf~-~TI~eNi~~~~~~~ 566 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVP--QDPRLFY-GTLRDNIALGAPYA 566 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEEC--CChhhhh-hhHHHHHhCCCCCC
Confidence 599999999999999999999999999999999999987532 2333333 1111111 2233333222110
Q ss_pred -----------------------------chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHH
Q 030541 73 -----------------------------GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 73 -----------------------------~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
...-..-+.+|+||..++|++.+ +|++++||||+...+......+.+.+
T Consensus 567 ~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~--~p~iliLDE~Ts~LD~~te~~i~~~l 644 (694)
T TIGR03375 567 DDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR--DPPILLLDEPTSAMDNRSEERFKDRL 644 (694)
T ss_pred CHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 00000123348999999999999 99999999995555555555666677
Q ss_pred HHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
.++. +++|+ +++||+++.+ +.+|++++++.|..+-+++.
T Consensus 645 ~~~~-~~~T~----iiItHrl~~~-~~~D~iivl~~G~i~e~G~~ 683 (694)
T TIGR03375 645 KRWL-AGKTL----VLVTHRTSLL-DLVDRIIVMDNGRIVADGPK 683 (694)
T ss_pred HHHh-CCCEE----EEEecCHHHH-HhCCEEEEEeCCEEEeeCCH
Confidence 7764 47899 9999999876 67999999999988766543
No 311
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.92 E-value=2.7e-25 Score=194.97 Aligned_cols=159 Identities=16% Similarity=0.129 Sum_probs=110.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc------cCCcccccc-------H-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS-------L- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~-------~- 59 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+++.+ .-+.++++. .
T Consensus 360 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~ 439 (585)
T TIGR01192 360 AGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDE 439 (585)
T ss_pred CCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHH
Confidence 599999999999999999999999999999999999976432 1222222 112222221 0
Q ss_pred --HHHHHHhCCC---------CC--CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 60 --EDVMEELGLG---------PN--GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 60 --~~~~~~~~l~---------~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
...++..++. .. .......-+.+|+||..++|++.. +|++++||||+...+....+.+.+.++++
T Consensus 440 ~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~--~p~ililDEpts~LD~~~~~~i~~~l~~~ 517 (585)
T TIGR01192 440 EVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK--NAPILVLDEATSALDVETEARVKNAIDAL 517 (585)
T ss_pred HHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 1111111110 00 000000113348999999999999 99999999996665566666777778776
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
. +++|+ +++||+++.+. .+|+++.++.|..+-+++
T Consensus 518 ~-~~~tv----I~isH~~~~~~-~~d~i~~l~~G~i~~~g~ 552 (585)
T TIGR01192 518 R-KNRTT----FIIAHRLSTVR-NADLVLFLDQGRLIEKGS 552 (585)
T ss_pred h-CCCEE----EEEEcChHHHH-cCCEEEEEECCEEEEECC
Confidence 4 48899 99999999885 599999998887665443
No 312
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.92 E-value=2.5e-25 Score=194.56 Aligned_cols=159 Identities=16% Similarity=0.107 Sum_probs=110.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+|++++|+||||||||||+++|+|+++|++|+|.++|.+... +.+++.+ .-+.++++.
T Consensus 340 ~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~ 419 (569)
T PRK10789 340 PGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQ 419 (569)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHH
Confidence 599999999999999999999999999999999999987532 1223332 112222221
Q ss_pred -HHHHHHHhCCCCC-----------CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 -LEDVMEELGLGPN-----------GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
...+++..++... .......-+.+|+||..++|++.+ +|++++||||+...+....+.+.+.++++
T Consensus 420 ~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~--~~~illlDEpts~LD~~~~~~i~~~l~~~ 497 (569)
T PRK10789 420 EIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL--NAEILILDDALSAVDGRTEHQILHNLRQW 497 (569)
T ss_pred HHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 1112222221100 000000112348999999999999 99999999996665566666777778776
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
. +++|+ +++||+++.+ ..+|+++.++.|..+-+++
T Consensus 498 ~-~~~ti----i~itH~~~~~-~~~d~i~~l~~G~i~~~g~ 532 (569)
T PRK10789 498 G-EGRTV----IISAHRLSAL-TEASEILVMQHGHIAQRGN 532 (569)
T ss_pred h-CCCEE----EEEecchhHH-HcCCEEEEEeCCEEEEecC
Confidence 4 58899 9999999877 4599999998887665443
No 313
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.92 E-value=1.9e-25 Score=199.55 Aligned_cols=155 Identities=16% Similarity=0.111 Sum_probs=108.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCccCCccccccHHHHHHHhCCCC---
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGP--- 70 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~--- 70 (175)
+|+.++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ +....| ..++.+++.++.
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~--Q~~~lf-~gTI~eNi~l~~~~~ 575 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLP--QEPYIF-SGSILENLLLGAKEN 575 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEe--cCceeh-hHHHHHHHhccCCCC
Confidence 599999999999999999999999999999999999987532 2334433 211111 123333333220
Q ss_pred --------------------------CCchhh--hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHH
Q 030541 71 --------------------------NGGLIY--CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 71 --------------------------~~~~~~--~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
+..... ..-+.+|+||..++|++.+ +|++++||||+...+....+.+.+.
T Consensus 576 ~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~--~p~iliLDE~Ts~LD~~te~~i~~~ 653 (708)
T TIGR01193 576 VSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT--DSKVLILDESTSNLDTITEKKIVNN 653 (708)
T ss_pred CCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCccccCCHHHHHHHHHH
Confidence 000000 0112348999999999999 9999999999555444445555566
Q ss_pred HHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 123 VDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++++ +++|+ +++||+++.+ ..+|+++.++.|..+-+++
T Consensus 654 L~~~--~~~T~----IiitHr~~~~-~~~D~i~~l~~G~i~~~G~ 691 (708)
T TIGR01193 654 LLNL--QDKTI----IFVAHRLSVA-KQSDKIIVLDHGKIIEQGS 691 (708)
T ss_pred HHHh--cCCEE----EEEecchHHH-HcCCEEEEEECCEEEEECC
Confidence 6654 47899 9999999876 6699999999988775544
No 314
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.92 E-value=3.5e-25 Score=194.20 Aligned_cols=158 Identities=16% Similarity=0.112 Sum_probs=108.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.++|+|+||||||||+|+|+|+++|++|+|.++|.++.. +.++|.+ .-+.++++.
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~ 439 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDE 439 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHH
Confidence 599999999999999999999999999999999999987532 2233332 112332221
Q ss_pred -HHHHHHHhCCCC---------CCchhhh--HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 -LEDVMEELGLGP---------NGGLIYC--MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l~~---------~~~~~~~--~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
...+++..++.. +-..... .-+.+|+||..++|++.+ +|++++||||+...+......+.+.++++
T Consensus 440 ~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~--~~~iliLDEpts~LD~~t~~~i~~~l~~~ 517 (588)
T PRK13657 440 EMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLK--DPPILILDEATSALDVETEAKVKAALDEL 517 (588)
T ss_pred HHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 111222222110 0000000 112348999999999999 99999999995555555555666667665
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
. +++|+ +++||+.+.+ +.+|+++.++.|..+-++
T Consensus 518 ~-~~~tv----IiitHr~~~~-~~~D~ii~l~~G~i~~~g 551 (588)
T PRK13657 518 M-KGRTT----FIIAHRLSTV-RNADRILVFDNGRVVESG 551 (588)
T ss_pred h-cCCEE----EEEEecHHHH-HhCCEEEEEECCEEEEeC
Confidence 3 47899 9999999876 569999999887766443
No 315
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=1.3e-25 Score=169.16 Aligned_cols=161 Identities=15% Similarity=0.159 Sum_probs=108.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEee-cCcccc------cCCCCccCCccccccHHHHHHH--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPAAE------NFDYPVAMDIRELISLEDVMEE-------- 65 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-------- 65 (175)
+||.-+|||||||||||++.+|+|..+|+.|++.++| .++... ..+....++....|...++.+|
T Consensus 30 ~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~ 109 (249)
T COG4674 30 PGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRD 109 (249)
T ss_pred CCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCC
Confidence 4899999999999999999999999999999999998 554220 1112222233344443334443
Q ss_pred -------------------------hCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHH
Q 030541 66 -------------------------LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120 (175)
Q Consensus 66 -------------------------~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~ 120 (175)
++++..... ....+|-.|+.||..+|.-..+|++|++|||.....-.......
T Consensus 110 k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~--~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~ta 187 (249)
T COG4674 110 KSVFASLFARLRAEERRRIDELLATIGLGDERDR--LAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA 187 (249)
T ss_pred cchHHHhhhhcChhHHHHHHHHHHHcccchhhhh--hhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHH
Confidence 343333211 12334433455666644433499999999993332222233456
Q ss_pred HHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 121 NFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 121 ~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
++++.++. +.+| +++.|||+.+..+++++.+|+.|.+.-.++.
T Consensus 188 eLl~~la~-~hsi----lVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 188 ELLKSLAG-KHSI----LVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred HHHHHHhc-CceE----EEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 68888865 5789 9999999999999999999999987665543
No 316
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.92 E-value=4.6e-25 Score=194.50 Aligned_cols=163 Identities=16% Similarity=0.097 Sum_probs=123.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccc---cceEEEeecCccc----ccCCC-------CccCCcccccc--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~---~G~I~i~g~~~~~----~~~~~-------~~~~~~~~~~~-------- 58 (175)
+||+++|+||||||||||+++|+|..++. +|+|.++|.+... +.++| .+.+++++++.
T Consensus 50 ~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 129 (617)
T TIGR00955 50 PGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMP 129 (617)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCC
Confidence 49999999999999999999999998874 7999999986421 12222 23334444332
Q ss_pred -----------HHHHHHHhCCCCCCchhhh------HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHH
Q 030541 59 -----------LEDVMEELGLGPNGGLIYC------MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN 121 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~ 121 (175)
..++++.+++......... .-+.+|++|..+++++.. +|++++||||+...+......+.+
T Consensus 130 ~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~--~p~vlllDEPtsgLD~~~~~~l~~ 207 (617)
T TIGR00955 130 RRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLT--DPPLLFCDEPTSGLDSFMAYSVVQ 207 (617)
T ss_pred CCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHc--CCCEEEeeCCCcchhHHHHHHHHH
Confidence 2345566666433222211 123348999999999999 999999999966666666777888
Q ss_pred HHHHHHhCCCcEEEEeeeehhchh-hhhcCCcceeEeccchhhHHhhhh
Q 030541 122 FVDHLKSRNFNVCAVYLLDSQVCI-RFRTLPPCIVCFCCTHTVVQRAYS 169 (175)
Q Consensus 122 ~l~~l~~~g~tvli~~l~~sH~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 169 (175)
.+++++++|.|| ++++|++. ++.+++|+++++..|..+++++..
T Consensus 208 ~L~~l~~~g~tv----i~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~ 252 (617)
T TIGR00955 208 VLKGLAQKGKTI----ICTIHQPSSELFELFDKIILMAEGRVAYLGSPD 252 (617)
T ss_pred HHHHHHhCCCEE----EEEeCCCCHHHHHHhceEEEeeCCeEEEECCHH
Confidence 999998789999 99999995 789999999999999999887643
No 317
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.92 E-value=7.5e-25 Score=191.42 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=111.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc------cCCccccccH--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELISL-------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~~-------- 59 (175)
+||.+||+||||||||||++.|+++++|++|+|.+||.+++. +.+++.+ .-++++++..
T Consensus 354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~e 433 (567)
T COG1132 354 PGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDE 433 (567)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHH
Confidence 599999999999999999999999999999999999987643 2334333 1122332220
Q ss_pred -----------HHHHHHh--CCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 60 -----------EDVMEEL--GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 60 -----------~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
.+..+++ ++.......-..-+.+|+||.++||++.. +||+++||||+...+......+.+.++++
T Consensus 434 ei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~--~~~ILILDEaTSalD~~tE~~I~~~l~~l 511 (567)
T COG1132 434 EIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR--NPPILILDEATSALDTETEALIQDALKKL 511 (567)
T ss_pred HHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc--CCCEEEEeccccccCHHhHHHHHHHHHHH
Confidence 1111111 11111100001123359999999999999 99999999995555555555666677766
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
. +++|+ ++++|++..+.+ +|++++++.|..+-.++
T Consensus 512 ~-~~rT~----iiIaHRlsti~~-aD~IiVl~~G~i~e~G~ 546 (567)
T COG1132 512 L-KGRTT----LIIAHRLSTIKN-ADRIIVLDNGRIVERGT 546 (567)
T ss_pred h-cCCEE----EEEeccHhHHHh-CCEEEEEECCEEEEecC
Confidence 5 56799 889999988877 99999999998655444
No 318
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.92 E-value=3.4e-25 Score=198.06 Aligned_cols=157 Identities=15% Similarity=0.062 Sum_probs=105.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ .-+.++++.
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e 585 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDE 585 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHH
Confidence 599999999999999999999999999999999999987532 1233322 223333332
Q ss_pred -HHHHHHHhCCCC---------CCchhh--hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 -LEDVMEELGLGP---------NGGLIY--CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l~~---------~~~~~~--~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++..++.. +-.... ..-+.+|+||..++|++.+ +|+++|||||+...+....+.+.+ ..
T Consensus 586 ~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~--~p~ILILDEpTSaLD~~te~~i~~---~~ 660 (711)
T TIGR00958 586 EIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR--KPRVLILDEATSALDAECEQLLQE---SR 660 (711)
T ss_pred HHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEEccccccCHHHHHHHHH---hh
Confidence 122233322211 000000 0123349999999999999 999999999944433333333333 11
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
..+++|+ +++||+++.+ ..+|+++.++.|..+-+++
T Consensus 661 ~~~~~Tv----IiItHrl~~i-~~aD~IivL~~G~ive~Gt 696 (711)
T TIGR00958 661 SRASRTV----LLIAHRLSTV-ERADQILVLKKGSVVEMGT 696 (711)
T ss_pred ccCCCeE----EEEeccHHHH-HhCCEEEEEECCEEEEeeC
Confidence 2357899 9999999876 5589999999988775544
No 319
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.92 E-value=7.7e-25 Score=191.19 Aligned_cols=156 Identities=17% Similarity=0.080 Sum_probs=108.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.++|+|+||||||||+|+|+|+++|++|+|.++|.+... +.++|.+ .-+.++++.
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~ 436 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADR 436 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCH
Confidence 599999999999999999999999999999999999976432 1233332 112222221
Q ss_pred --HHHHHHHhCCCC---------C--CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHH
Q 030541 59 --LEDVMEELGLGP---------N--GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 59 --~~~~~~~~~l~~---------~--~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
..++++..++.. + ....-..-+.+|+||..++|++.+ +|++++||||+...+....+.+.+.+++
T Consensus 437 ~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~--~~~illLDEpts~LD~~~~~~i~~~L~~ 514 (571)
T TIGR02203 437 AEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK--DAPILILDEATSALDNESERLVQAALER 514 (571)
T ss_pred HHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 112222222211 0 000000123449999999999999 9999999999666556666667777777
Q ss_pred HHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhH
Q 030541 126 LKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 126 l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
+. +++|+ +++||+.... ..+|+++.++.+..+-
T Consensus 515 ~~-~~~ti----IiitH~~~~~-~~~D~ii~l~~g~i~~ 547 (571)
T TIGR02203 515 LM-QGRTT----LVIAHRLSTI-EKADRIVVMDDGRIVE 547 (571)
T ss_pred Hh-CCCEE----EEEehhhHHH-HhCCEEEEEeCCEEEe
Confidence 64 46899 9999998664 7799999998876553
No 320
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.92 E-value=1.1e-24 Score=188.89 Aligned_cols=149 Identities=21% Similarity=0.181 Sum_probs=103.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+|+.++|+||||||||||+|+|+|+++|++|+|.++|.+... +.+++.+ .-+.++++.
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~ 426 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDA 426 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHH
Confidence 599999999999999999999999999999999999987532 1223222 223333322
Q ss_pred -HHHHHHHhCCCCCC-----chh----hhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 -LEDVMEELGLGPNG-----GLI----YCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l~~~~-----~~~----~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++..++.... ... .... +.+|+||..++|++.+ +|++++||||+...+.+..+.+.+.+.++
T Consensus 427 ~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~--~~~ililDE~ts~lD~~~~~~i~~~l~~~ 504 (529)
T TIGR02857 427 EIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR--DAPLLLLDEPTAHLDAETEALVTEALRAL 504 (529)
T ss_pred HHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHHHHHHHh
Confidence 12223332222100 000 0011 2248999999999999 99999999996665566566666777776
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEe
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
. +++|+ +++||+++.+ +.+|+++.+
T Consensus 505 ~-~~~t~----i~itH~~~~~-~~~d~i~~l 529 (529)
T TIGR02857 505 A-QGRTV----LLVTHRLALA-ERADRIVVL 529 (529)
T ss_pred c-CCCEE----EEEecCHHHH-HhCCEEEeC
Confidence 4 57899 9999999877 568988754
No 321
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=1.4e-24 Score=160.31 Aligned_cols=154 Identities=15% Similarity=0.127 Sum_probs=115.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||+.+|+||+|||||||+|+++.+++|++|++.+.|+++.. +.++|.. .-++.+++.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr 107 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRR 107 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhccC
Confidence 599999999999999999999999999999999999988532 2222221 113333332
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH-HhCC
Q 030541 59 -----LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL-KSRN 130 (175)
Q Consensus 59 -----~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l-~~~g 130 (175)
....++.++++..- .......+| ++|+.+|.|.+.. -|++|+||||+...+-++...+.+++..+ +++.
T Consensus 108 ~dr~aa~~llar~~l~~~~-L~k~it~lSGGE~QriAliR~Lq~--~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~ 184 (223)
T COG4619 108 PDRAAALDLLARFALPDSI-LTKNITELSGGEKQRIALIRNLQF--MPKILLLDEITSALDESNKRNIEEMIHRYVREQN 184 (223)
T ss_pred CChHHHHHHHHHcCCchhh-hcchhhhccchHHHHHHHHHHhhc--CCceEEecCchhhcChhhHHHHHHHHHHHhhhhc
Confidence 24456666665432 122233444 8999999999999 99999999996666666677787888887 4778
Q ss_pred CcEEEEeeeehhchhhhhcCCcceeEeccch
Q 030541 131 FNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 131 ~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
.++ +-+||+-+++.+.+++++-+..|+
T Consensus 185 vAv----~WiTHd~dqa~rha~k~itl~~G~ 211 (223)
T COG4619 185 VAV----LWITHDKDQAIRHADKVITLQPGH 211 (223)
T ss_pred eEE----EEEecChHHHhhhhheEEEeccCc
Confidence 899 999999999999999888776643
No 322
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=1.4e-24 Score=159.70 Aligned_cols=165 Identities=18% Similarity=0.125 Sum_probs=120.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCc--c-----------cccCCCCccCCccccccHHHHHHH--
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--A-----------AENFDYPVAMDIRELISLEDVMEE-- 65 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~--~-----------~~~~~~~~~~~~~~~~~~~~~~~~-- 65 (175)
+||.++++||+|||||||+|.+.=+.-|.+|+..+.|... . +++++.++ +-+...+..++.++
T Consensus 27 ~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvf--qqy~lwphltv~enli 104 (242)
T COG4161 27 EGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVF--QQYNLWPHLTVQENLI 104 (242)
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhh--hhhccCchhHHHHHHH
Confidence 5999999999999999999999999999999999976532 1 12344443 33333333333333
Q ss_pred ------------------------hCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHH
Q 030541 66 ------------------------LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN 121 (175)
Q Consensus 66 ------------------------~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~ 121 (175)
+.+........-.-+..++||.+++|+++. +|+++++|||+...+..-...+-+
T Consensus 105 eap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmm--kpqvllfdeptaaldpeitaqvv~ 182 (242)
T COG4161 105 EAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMM--EPQVLLFDEPTAALDPEITAQIVS 182 (242)
T ss_pred hhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhc--CCcEEeecCcccccCHHHHHHHHH
Confidence 333222111111112237889999999999 999999999954444443445566
Q ss_pred HHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhhhcccc
Q 030541 122 FVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYSFLFH 173 (175)
Q Consensus 122 ~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (175)
++++++..|.|- +++||..+.+.+.++++++|+.|+.|-|++.+-|-+
T Consensus 183 iikel~~tgitq----vivthev~va~k~as~vvyme~g~ive~g~a~~ft~ 230 (242)
T COG4161 183 IIKELAETGITQ----VIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTE 230 (242)
T ss_pred HHHHHHhcCceE----EEEEeehhHHHhhhhheEeeecCeeEeecchhhccC
Confidence 899999999999 999999999999999999999999999998776543
No 323
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.91 E-value=1e-24 Score=190.74 Aligned_cols=159 Identities=16% Similarity=0.116 Sum_probs=110.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.++|+|+||||||||+|+|+|+++|++|+|.++|.++.. +.++|.+ .-+.++++.
T Consensus 365 ~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~ 444 (576)
T TIGR02204 365 PGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDE 444 (576)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHH
Confidence 599999999999999999999999999999999999976432 1233332 112332222
Q ss_pred -HHHHHHHhCCC---------CCC--chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 -LEDVMEELGLG---------PNG--GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l~---------~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++..++. .+. ......-+.+|+||..++|++.+ +|++++||||+...+....+.+.+.++++
T Consensus 445 ~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~--~~~ililDEpts~lD~~~~~~i~~~l~~~ 522 (576)
T TIGR02204 445 EVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK--DAPILLLDEATSALDAESEQLVQQALETL 522 (576)
T ss_pred HHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh--CCCeEEEeCcccccCHHHHHHHHHHHHHH
Confidence 12222222221 110 00001123348999999999999 99999999995555555566666777776
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
. +++|+ +++||+.+.. ..+|+++.++.|..+-.++
T Consensus 523 ~-~~~t~----IiitH~~~~~-~~~d~vi~l~~g~~~~~g~ 557 (576)
T TIGR02204 523 M-KGRTT----LIIAHRLATV-LKADRIVVMDQGRIVAQGT 557 (576)
T ss_pred h-CCCEE----EEEecchHHH-HhCCEEEEEECCEEEeeec
Confidence 4 47899 9999999776 5689999998887664433
No 324
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.91 E-value=1.4e-24 Score=189.03 Aligned_cols=156 Identities=15% Similarity=0.017 Sum_probs=109.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCcc------CCcccc---c---cHHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA------MDIREL---I---SLED 61 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~------~~~~~~---~---~~~~ 61 (175)
+|+.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+++.+. -+..++ . ...+
T Consensus 348 ~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~ 427 (547)
T PRK10522 348 RGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEK 427 (547)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHHHHH
Confidence 599999999999999999999999999999999999987532 12222221 111221 1 1233
Q ss_pred HHHHhCCCCCCchhh-----hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH-HhCCCcEEE
Q 030541 62 VMEELGLGPNGGLIY-----CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL-KSRNFNVCA 135 (175)
Q Consensus 62 ~~~~~~l~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l-~~~g~tvli 135 (175)
+++.+++........ ..-+..|+||..++|++.+ +|++++||||+...+....+.+.+.+.+. +++++|+
T Consensus 428 ~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~--~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tv-- 503 (547)
T PRK10522 428 WLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAE--ERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTI-- 503 (547)
T ss_pred HHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEE--
Confidence 455555543221100 0123349999999999999 99999999995555555555565566544 3458999
Q ss_pred EeeeehhchhhhhcCCcceeEeccchhh
Q 030541 136 VYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 136 ~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+++||+++.+ ..+|+++.++.|..+
T Consensus 504 --i~itH~~~~~-~~~d~i~~l~~G~i~ 528 (547)
T PRK10522 504 --FAISHDDHYF-IHADRLLEMRNGQLS 528 (547)
T ss_pred --EEEEechHHH-HhCCEEEEEECCEEE
Confidence 9999998654 679999999988755
No 325
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.91 E-value=2.5e-24 Score=187.82 Aligned_cols=156 Identities=15% Similarity=0.079 Sum_probs=109.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCcc------CCcccccc-------HH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA------MDIRELIS-------LE 60 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~------~~~~~~~~-------~~ 60 (175)
+|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.+. -+.+++.. ..
T Consensus 367 ~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~ 446 (555)
T TIGR01194 367 QGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQ 446 (555)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHHHH
Confidence 599999999999999999999999999999999999987542 12222221 11222211 23
Q ss_pred HHHHHhCCCCCCchh------hhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHH-HHHHHHhCCCcE
Q 030541 61 DVMEELGLGPNGGLI------YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN-FVDHLKSRNFNV 133 (175)
Q Consensus 61 ~~~~~~~l~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~-~l~~l~~~g~tv 133 (175)
++++..++....... ...-+-+|+||..++|++.. +|+++|||||+...+....+.+.+ +++.++.+++|+
T Consensus 447 ~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~--~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~ti 524 (555)
T TIGR01194 447 QYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLE--DRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTI 524 (555)
T ss_pred HHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 455555554322110 01123349999999999999 999999999955544554555544 344455568999
Q ss_pred EEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 134 CAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 134 li~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+++||+++.+ +.+|+++.++.|..+
T Consensus 525 ----iiisH~~~~~-~~~d~i~~l~~G~i~ 549 (555)
T TIGR01194 525 ----IIISHDDQYF-ELADQIIKLAAGCIV 549 (555)
T ss_pred ----EEEeccHHHH-HhCCEEEEEECCEEE
Confidence 9999999865 689999999887653
No 326
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.8e-24 Score=166.44 Aligned_cols=159 Identities=16% Similarity=0.143 Sum_probs=110.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccC--ccccceEEEeecCccc---------------ccCCCCccCCcccccc-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~--~~~~G~I~i~g~~~~~---------------~~~~~~~~~~~~~~~~----- 58 (175)
+||+++|.||||||||||.++|+|.- ++++|+|.++|+++.. |...-.+..+..+++.
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~ 108 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNA 108 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHh
Confidence 49999999999999999999999985 6899999999998632 1111111112211111
Q ss_pred --------------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHH
Q 030541 59 --------------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 --------------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..+.++.+++.+....+.-..-+| ++.|.-+.+.++. +|++.|||||....+.++...+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~l--ePkl~ILDE~DSGLDIdalk~V~~~ 186 (251)
T COG0396 109 RRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLL--EPKLAILDEPDSGLDIDALKIVAEG 186 (251)
T ss_pred hhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhc--CCCEEEecCCCcCccHHHHHHHHHH
Confidence 233455555554211111111223 6666666777776 9999999999666667778888889
Q ss_pred HHHHHhCCCcEEEEeeeehhchhhhhcCC--cceeEeccchhhHHh
Q 030541 123 VDHLKSRNFNVCAVYLLDSQVCIRFRTLP--PCIVCFCCTHTVVQR 166 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~~~~~~~~--~~~~~~~~~~~~~~~ 166 (175)
+++++++|.++ +++||+-+ +.+++ |++-+|+.|.++--+
T Consensus 187 i~~lr~~~~~~----liITHy~r-ll~~i~pD~vhvl~~GrIv~sG 227 (251)
T COG0396 187 INALREEGRGV----LIITHYQR-LLDYIKPDKVHVLYDGRIVKSG 227 (251)
T ss_pred HHHHhcCCCeE----EEEecHHH-HHhhcCCCEEEEEECCEEEecC
Confidence 99999999999 99999855 55666 888888888776544
No 327
>PLN03073 ABC transporter F family; Provisional
Probab=99.91 E-value=1e-24 Score=194.47 Aligned_cols=150 Identities=14% Similarity=0.030 Sum_probs=104.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCCc-----cCCcccc--------c------cHHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPV-----AMDIREL--------I------SLED 61 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~-----~~~~~~~--------~------~~~~ 61 (175)
+|++++|+||||||||||+|+|+|+++|++|+|.+++.. .++|.+ .++.... + ....
T Consensus 534 ~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~----~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 609 (718)
T PLN03073 534 LDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKV----RMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 609 (718)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCce----eEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHH
Confidence 499999999999999999999999999999999976431 011111 0000000 0 1234
Q ss_pred HHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeee
Q 030541 62 VMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (175)
Q Consensus 62 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~ 140 (175)
+++.+++... .......-+..+++|..+++++.. +|++||||||+...+....+.+.+.+.++ +.|| +++
T Consensus 610 ~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~--~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~gtv----Iiv 680 (718)
T PLN03073 610 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK--KPHILLLDEPSNHLDLDAVEALIQGLVLF---QGGV----LMV 680 (718)
T ss_pred HHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCEE----EEE
Confidence 5666666421 111222223448999999999999 99999999995554444444444444332 3488 999
Q ss_pred hhchhhhhcCCcceeEeccchhh
Q 030541 141 SQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 141 sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
||+++++..+|++++++..+..+
T Consensus 681 SHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 681 SHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred ECCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999988765
No 328
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.91 E-value=1.6e-24 Score=178.19 Aligned_cols=165 Identities=19% Similarity=0.184 Sum_probs=128.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccc-------------------cCCCCccCCcccccc---
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------------------NFDYPVAMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~-------------------~~~~~~~~~~~~~~~--- 58 (175)
.|+.+||+|++|||||||-.+|.+++++. |+|.+.|.++... .-++.|.+++.+.+.
T Consensus 312 ~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL 390 (534)
T COG4172 312 RGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGL 390 (534)
T ss_pred CCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhh
Confidence 48999999999999999999999999875 9999999875321 111223333333332
Q ss_pred ---------------HHHHHHHhCCCCCCchhhhHHH-HHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHH
Q 030541 59 ---------------LEDVMEELGLGPNGGLIYCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..++++++++++......+.+- -.|+||.++||++.. +|++++||||+...+.+-...+..+
T Consensus 391 ~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliL--kP~~i~LDEPTSALD~SVQaQvv~L 468 (534)
T COG4172 391 RVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALIL--KPELILLDEPTSALDRSVQAQVLDL 468 (534)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhc--CCcEEEecCCchHhhHHHHHHHHHH
Confidence 3467888898877655554432 239999999999999 9999999999555555555567779
Q ss_pred HHHHH-hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhhhccc
Q 030541 123 VDHLK-SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYSFLF 172 (175)
Q Consensus 123 l~~l~-~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (175)
+++++ +.|.+- +++|||+..+.-+|+++++|..|.+|-|+...--|
T Consensus 469 Lr~LQ~k~~LsY----LFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 469 LRDLQQKHGLSY----LFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred HHHHHHHhCCeE----EEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHh
Confidence 99986 458888 99999999999999999999999999988765444
No 329
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.91 E-value=5.5e-24 Score=178.81 Aligned_cols=153 Identities=22% Similarity=0.109 Sum_probs=113.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCccCCcccccc---------------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELIS--------------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~--------------- 58 (175)
+||.+|||||+|||||||.|+|.|..+|.+|.|++||-+... +.++|.| +.-+.|.
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLP--QdVeLF~GTIaeNIaRf~~~~d 438 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLP--QDVELFDGTIAENIARFGEEAD 438 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCc--ccceecCCcHHHHHHhccccCC
Confidence 499999999999999999999999999999999999987643 3456666 3333333
Q ss_pred HHHHHH------------HhCCCCCCchhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHH
Q 030541 59 LEDVME------------ELGLGPNGGLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 ~~~~~~------------~~~l~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..++.+ .+.-+.+-....... +..||||..|+|++.. +|.+++||||....+..+...+.+.+.
T Consensus 439 ~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG--~P~lvVLDEPNsNLD~~GE~AL~~Ai~ 516 (580)
T COG4618 439 PEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYG--DPFLVVLDEPNSNLDSEGEAALAAAIL 516 (580)
T ss_pred HHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcC--CCcEEEecCCCCCcchhHHHHHHHHHH
Confidence 111221 111111100011112 2349999999999999 999999999977766777777888899
Q ss_pred HHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchh
Q 030541 125 HLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHT 162 (175)
Q Consensus 125 ~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~ 162 (175)
+.+++|.|+ +++||+.. +...+|.+.+|..|..
T Consensus 517 ~~k~rG~~v----vviaHRPs-~L~~~Dkilvl~~G~~ 549 (580)
T COG4618 517 AAKARGGTV----VVIAHRPS-ALASVDKILVLQDGRI 549 (580)
T ss_pred HHHHcCCEE----EEEecCHH-HHhhcceeeeecCChH
Confidence 999999999 99999987 4577899999988753
No 330
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=4.4e-24 Score=194.35 Aligned_cols=157 Identities=17% Similarity=0.114 Sum_probs=116.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccc-------cCCCCccCCccccccHHHHHHHhCCCCCCc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDYPVAMDIRELISLEDVMEELGLGPNGG 73 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (175)
.|++++|+|||||||||++++|.+++.|++|+|.++|.+++.- .++.+. +.+ .+...++.||+.++....
T Consensus 378 ~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~--QeP-vlF~~tI~eNI~~G~~da 454 (1228)
T KOG0055|consen 378 SGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVS--QEP-VLFATTIRENIRYGKPDA 454 (1228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeee--ech-hhhcccHHHHHhcCCCcc
Confidence 4999999999999999999999999999999999999987542 223222 111 222334444444443211
Q ss_pred hhh------------------------------hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHH
Q 030541 74 LIY------------------------------CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 74 ~~~------------------------------~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
... ..-+-.||||.++||++.+ +|++|+||||+...+......+++.|
T Consensus 455 t~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~--~P~ILLLDEaTSaLD~~se~~Vq~AL 532 (1228)
T KOG0055|consen 455 TREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVR--NPKILLLDEATSALDAESERVVQEAL 532 (1228)
T ss_pred cHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHh--CCCEEEecCcccccCHHHHHHHHHHH
Confidence 000 0112348999999999999 99999999995555555556667777
Q ss_pred HHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
+.. .+|+|. ++++|++..+.+ +|++++++.|+.|-+++-
T Consensus 533 d~~-~~grTT----ivVaHRLStIrn-aD~I~v~~~G~IvE~G~h 571 (1228)
T KOG0055|consen 533 DKA-SKGRTT----IVVAHRLSTIRN-ADKIAVMEEGKIVEQGTH 571 (1228)
T ss_pred HHh-hcCCeE----EEEeeehhhhhc-cCEEEEEECCEEEEecCH
Confidence 766 458899 999999999988 999999999998876653
No 331
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=9.6e-24 Score=157.99 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=115.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------------ccCCCCccCCcccccc------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------------ENFDYPVAMDIRELIS------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------------~~~~~~~~~~~~~~~~------ 58 (175)
+|+.+++||.||||||||.|+|+|+++|++|+|.++|.+..- .+.++.|.++....+.
T Consensus 38 ~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~ 117 (267)
T COG4167 38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLN 117 (267)
T ss_pred CCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhc
Confidence 589999999999999999999999999999999999976421 2223333322222221
Q ss_pred -----------HHHHHHHhCCCCCCchhh-hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 -----------LEDVMEELGLGPNGGLIY-CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..+-+..+++.+...... ..-+.+++||++++|++.- +|+++|.||.-...++.-+-.+.++.-++
T Consensus 118 T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL--~P~iIIaDeAl~~LD~smrsQl~NL~LeL 195 (267)
T COG4167 118 TDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALIL--RPKIIIADEALASLDMSMRSQLINLMLEL 195 (267)
T ss_pred ccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhc--CCcEEEehhhhhhccHHHHHHHHHHHHHH
Confidence 234455567666543222 2234469999999999999 99999999993333333333444566666
Q ss_pred Hh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++ .|.+- +.+++++-.+-.++|.+++|+.|.+|--+
T Consensus 196 Qek~GiSy----iYV~QhlG~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 196 QEKQGISY----IYVTQHIGMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred HHHhCceE----EEEechhhHhhhhcccEEEEecCceeecC
Confidence 54 58888 99999999999999999999999877443
No 332
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.91 E-value=3.5e-24 Score=202.15 Aligned_cols=161 Identities=14% Similarity=0.100 Sum_probs=118.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc---cccceEEEeecCccc---ccCCCCc-------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA---ENFDYPV-------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~---~~~G~I~i~g~~~~~---~~~~~~~-------~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+++|+|+.+ |++|+|.++|.+... +.++|.+ ..++++++.
T Consensus 788 ~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~ 867 (1394)
T TIGR00956 788 PGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPK 867 (1394)
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCC
Confidence 499999999999999999999999997 788999999986521 1223322 233433332
Q ss_pred ----------HHHHHHHhCCCCCCchhhh----HHHHHHHHHHHHHHHhhccCCCC-EEEEeCCCcccccccchhHHHHH
Q 030541 59 ----------LEDVMEELGLGPNGGLIYC----MEHLEDNLDDWLAEELDNYLDDD-YLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 59 ----------~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~p~-lliLDEP~~~~~~~~~~~~~~~l 123 (175)
..++++.+++......... .-+..|++|..+++++.. +|+ +++||||+...+......+.+.|
T Consensus 868 ~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~--~P~~iLlLDEPTsgLD~~~~~~i~~~L 945 (1394)
T TIGR00956 868 SVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVA--KPKLLLFLDEPTSGLDSQTAWSICKLM 945 (1394)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHc--CCCeEEEEcCCCCCCCHHHHHHHHHHH
Confidence 1234555555432211111 123448999999999999 997 99999996666666777888899
Q ss_pred HHHHhCCCcEEEEeeeehhchhh-hhcCCcceeEeccc-hhhHHhh
Q 030541 124 DHLKSRNFNVCAVYLLDSQVCIR-FRTLPPCIVCFCCT-HTVVQRA 167 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~-~~~~~~~~~~~~~~-~~~~~~~ 167 (175)
++++++|.|| ++++|+++. +.+.+|+++++..| ..++++.
T Consensus 946 ~~la~~g~tv----I~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 946 RKLADHGQAI----LCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred HHHHHcCCEE----EEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 9998889999 999999986 45789999999986 7777654
No 333
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.90 E-value=4.8e-24 Score=194.18 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=121.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCccC-------Ccccccc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPVAM-------DIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~~~-------~~~~~~~------- 58 (175)
+|||.|++|+|||||||++|+++|..+|++|++.+.|.+... +.++|.|.. +.++.+.
T Consensus 590 ~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG 669 (885)
T KOG0059|consen 590 PGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRG 669 (885)
T ss_pred CCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcC
Confidence 599999999999999999999999999999999999987643 346777632 2333322
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC
Q 030541 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
....++.+++.+.........+-.++.|...+.++.. +|++++||||+...+..++..+|.++.+++++
T Consensus 670 ~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig--~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~ 747 (885)
T KOG0059|consen 670 LPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIG--DPSVILLDEPSTGLDPKARRHLWDIIARLRKN 747 (885)
T ss_pred CChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhc--CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 1334455555544433332233346777888888888 99999999997777778888999999999888
Q ss_pred CCcEEEEeeeehhchhhhhcCCcceeEeccchh
Q 030541 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHT 162 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~ 162 (175)
|++| +++||.++|++-+|+|+.+|..|.-
T Consensus 748 g~ai----iLTSHsMeE~EaLCtR~aImv~G~l 776 (885)
T KOG0059|consen 748 GKAI----ILTSHSMEEAEALCTRTAIMVIGQL 776 (885)
T ss_pred CCEE----EEEcCCHHHHHHHhhhhheeecCee
Confidence 7799 9999999999999999999988753
No 334
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.90 E-value=1.1e-23 Score=199.24 Aligned_cols=151 Identities=13% Similarity=0.082 Sum_probs=110.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEe-ecCccc-------ccCCCCccCCccccccHHHHHHHhCCCCCC
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-NLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNG 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~-g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 72 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++ |.++.. +.+++++ +....|. .++.+++.++...
T Consensus 410 ~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~--Q~~~LF~-~TI~eNI~~g~~~ 486 (1466)
T PTZ00265 410 EGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVS--QDPLLFS-NSIKNNIKYSLYS 486 (1466)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEec--ccccchh-ccHHHHHHhcCCC
Confidence 599999999999999999999999999999999995 555421 2344444 2222232 2444444332100
Q ss_pred --------------------------------------------------------------------------------
Q 030541 73 -------------------------------------------------------------------------------- 72 (175)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (175)
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp 566 (1466)
T PTZ00265 487 LKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALP 566 (1466)
T ss_pred ccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCc
Confidence
Q ss_pred -------chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh-CCCcEEEEeeeehhch
Q 030541 73 -------GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQVC 144 (175)
Q Consensus 73 -------~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~ 144 (175)
......-+..|+||..|+|++.. +|++||||||+...+......+.+.|+++++ +|+|+ +++||++
T Consensus 567 ~g~dT~vg~~g~~LSGGQkQRiaIARAll~--~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~Tv----IiIsHrl 640 (1466)
T PTZ00265 567 DKYETLVGSNASKLSGGQKQRISIARAIIR--NPKILILDEATSSLDNKSEYLVQKTINNLKGNENRIT----IIIAHRL 640 (1466)
T ss_pred cccCceeCCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEE----EEEeCCH
Confidence 00000112248999999999999 9999999999666566666777788888865 58999 9999999
Q ss_pred hhhhcCCcceeEeccch
Q 030541 145 IRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 145 ~~~~~~~~~~~~~~~~~ 161 (175)
+.+ +.+|++++|+.|.
T Consensus 641 s~i-~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 641 STI-RYANTIFVLSNRE 656 (1466)
T ss_pred HHH-HhCCEEEEEeCCc
Confidence 987 6899999998863
No 335
>PLN03140 ABC transporter G family member; Provisional
Probab=99.90 E-value=9.9e-24 Score=199.24 Aligned_cols=161 Identities=15% Similarity=0.096 Sum_probs=119.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc--cccceEEEeecCccc----ccCCCC-------ccCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDPAA----ENFDYP-------VAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~--~~~G~I~i~g~~~~~----~~~~~~-------~~~~~~~~~~--------- 58 (175)
+|++++|+||||||||||+++|+|..+ +.+|+|.++|.+... +..+|. +.+++++.+.
T Consensus 905 ~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~ 984 (1470)
T PLN03140 905 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPK 984 (1470)
T ss_pred CCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCC
Confidence 499999999999999999999999976 378999999976431 112222 2233333321
Q ss_pred ----------HHHHHHHhCCCCCCchhh-----hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHH
Q 030541 59 ----------LEDVMEELGLGPNGGLIY-----CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 59 ----------~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
..++++.+++........ ..-+.+|++|..+++++.. +|++++||||+...+......+.+.|
T Consensus 985 ~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~--~P~lL~LDEPTsgLD~~~a~~v~~~L 1062 (1470)
T PLN03140 985 EVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVA--NPSIIFMDEPTSGLDARAAAIVMRTV 1062 (1470)
T ss_pred CCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 123455555543211111 1123458999999999999 99999999996666667777888899
Q ss_pred HHHHhCCCcEEEEeeeehhchh-hhhcCCcceeEecc-chhhHHhh
Q 030541 124 DHLKSRNFNVCAVYLLDSQVCI-RFRTLPPCIVCFCC-THTVVQRA 167 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~-~~~~~~~~~~~~~~-~~~~~~~~ 167 (175)
++++++|.|| ++++|+++ ++.+.+|++++|+. |+.++++.
T Consensus 1063 ~~l~~~g~tV----I~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~ 1104 (1470)
T PLN03140 1063 RNTVDTGRTV----VCTIHQPSIDIFEAFDELLLMKRGGQVIYSGP 1104 (1470)
T ss_pred HHHHHCCCEE----EEEeCCCCHHHHHhCCEEEEEcCCCEEEEECC
Confidence 9998889999 99999998 57889999999985 77776654
No 336
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.7e-23 Score=154.86 Aligned_cols=141 Identities=16% Similarity=0.065 Sum_probs=104.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccc-------------cCCCCccCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------------NFDYPVAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~-------------~~~~~~~~~~~~~~~--------- 58 (175)
.||++.|.||||||||||+|+|+|+.+|++|+|.+.|.++... ..+....++..+++.
T Consensus 27 ~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~ 106 (209)
T COG4133 27 AGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSG 106 (209)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCC
Confidence 3899999999999999999999999999999999998765431 223444456665554
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEE
Q 030541 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVC 134 (175)
Q Consensus 59 ----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvl 134 (175)
..+.++.+++..........-+..|+.|.+++|-... .+|+=|||||....+..+...+..++..-..+|.-|
T Consensus 107 ~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls--~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiV- 183 (209)
T COG4133 107 NAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLS--PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIV- 183 (209)
T ss_pred chhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcC--CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEE-
Confidence 2455666676655433332223348888999998888 999999999955555556666777777766678778
Q ss_pred EEeeeehhchhhh
Q 030541 135 AVYLLDSQVCIRF 147 (175)
Q Consensus 135 i~~l~~sH~~~~~ 147 (175)
+.+||..--+
T Consensus 184 ---llttHq~l~~ 193 (209)
T COG4133 184 ---LLTTHQPLPI 193 (209)
T ss_pred ---EEecCCccCC
Confidence 9999986554
No 337
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.90 E-value=7.7e-24 Score=183.60 Aligned_cols=137 Identities=19% Similarity=0.133 Sum_probs=92.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc------ccCCCCc------cCCcccccc----------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYPV------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~~------~~~~~~~~~---------- 58 (175)
+||.++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ .-+.++++.
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~ 439 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEE 439 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHH
Confidence 599999999999999999999999999999999999977542 1233332 113333322
Q ss_pred HHHHHHHhCCCCCC-----chhh------hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 LEDVMEELGLGPNG-----GLIY------CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 ~~~~~~~~~l~~~~-----~~~~------~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++..++.... .... ..-+.+|+||..+||++.+ +|++++||||+...+....+.+.+.+.++
T Consensus 440 i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~--~~~iliLDE~TSaLD~~te~~I~~~l~~~- 516 (529)
T TIGR02868 440 LWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA--DAPILLLDEPTEHLDAGTESELLEDLLAA- 516 (529)
T ss_pred HHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHh-
Confidence 12223322221100 0000 0112348999999999999 99999999995555555555566666654
Q ss_pred hCCCcEEEEeeeehhch
Q 030541 128 SRNFNVCAVYLLDSQVC 144 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~ 144 (175)
.+++|+ +++||++
T Consensus 517 ~~~~Tv----IiItHrl 529 (529)
T TIGR02868 517 LSGKTV----VVITHHL 529 (529)
T ss_pred cCCCEE----EEEecCC
Confidence 357899 9999974
No 338
>PLN03232 ABC transporter C family member; Provisional
Probab=99.89 E-value=2.1e-23 Score=198.16 Aligned_cols=159 Identities=15% Similarity=0.089 Sum_probs=111.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.+||+|++|||||||+++|.|+++|++|+|.++|.++.. +.+++.+ .-+.++++.
T Consensus 1261 ~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdee 1340 (1495)
T PLN03232 1261 PSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDAD 1340 (1495)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHH
Confidence 599999999999999999999999999999999999988642 1233322 113333332
Q ss_pred HHHHHHHhCCCC---------CCchhhh--HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 LEDVMEELGLGP---------NGGLIYC--MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 ~~~~~~~~~l~~---------~~~~~~~--~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++..++.. +-..... .-+.+|+|+..+||++.+ +|++++||||+...+......+.+.+++.
T Consensus 1341 i~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr--~~~ILILDEATSaLD~~Te~~Iq~~L~~~- 1417 (1495)
T PLN03232 1341 LWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR--RSKILVLDEATASVDVRTDSLIQRTIREE- 1417 (1495)
T ss_pred HHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHHHHHHHH-
Confidence 122333322211 0000000 123349999999999999 99999999995555455555666667665
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.+++|+ ++++|+++.+.+ +|++++|+.|+.+-+++
T Consensus 1418 ~~~~Tv----I~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt 1452 (1495)
T PLN03232 1418 FKSCTM----LVIAHRLNTIID-CDKILVLSSGQVLEYDS 1452 (1495)
T ss_pred cCCCEE----EEEeCCHHHHHh-CCEEEEEECCEEEEECC
Confidence 357999 999999998876 89999999888764433
No 339
>PLN03130 ABC transporter C family member; Provisional
Probab=99.89 E-value=3.6e-23 Score=197.35 Aligned_cols=158 Identities=15% Similarity=0.081 Sum_probs=111.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.+||+|++|||||||+++|.|+++|++|+|.++|.++.. +.+++.+ .-+.++++.
T Consensus 1264 ~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdee 1343 (1622)
T PLN03130 1264 PSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDAD 1343 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHH
Confidence 499999999999999999999999999999999999988643 2233332 113333332
Q ss_pred HHHHHHHhCCC---------CCCchhhh--HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 LEDVMEELGLG---------PNGGLIYC--MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 ~~~~~~~~~l~---------~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++..++. .+-..... .-+.+|+|+..|||++.+ +|++|+||||+...+......+.+.|++..
T Consensus 1344 i~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr--~p~ILILDEATSaLD~~Te~~Iq~~I~~~~ 1421 (1622)
T PLN03130 1344 LWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR--RSKILVLDEATAAVDVRTDALIQKTIREEF 1421 (1622)
T ss_pred HHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHHHHHHHHC
Confidence 12222322221 11000000 123348999999999999 999999999955555555556666777653
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++|+ ++++|+++.+.+ +|++++|+.|.++-++
T Consensus 1422 -~~~Tv----I~IAHRL~tI~~-~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130 1422 -KSCTM----LIIAHRLNTIID-CDRILVLDAGRVVEFD 1454 (1622)
T ss_pred -CCCEE----EEEeCChHHHHh-CCEEEEEECCEEEEeC
Confidence 47999 999999999876 7999999998876443
No 340
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.6e-23 Score=174.91 Aligned_cols=161 Identities=14% Similarity=0.072 Sum_probs=110.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccc-------cCCCCc------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~-------~~~~~~------~~~~~~~~~--------- 58 (175)
.||-++|+|++|||||||+..++|.++|++|+|.++|.++..- .+++.. .-+.++++.
T Consensus 363 ~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDE 442 (573)
T COG4987 363 QGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDE 442 (573)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHH
Confidence 4999999999999999999999999999999999999876431 122221 112333332
Q ss_pred -HHHHHHHhCCCCCCc---------hhhh--HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 -LEDVMEELGLGPNGG---------LIYC--MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l~~~~~---------~~~~--~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
...+++.+++..... .... .-+-.+++|..|+|.+.+ |.|+++||||+...+......+.+++.+-
T Consensus 443 el~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~--dapl~lLDEPTegLD~~TE~~vL~ll~~~ 520 (573)
T COG4987 443 ELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH--DAPLWLLDEPTEGLDPITERQVLALLFEH 520 (573)
T ss_pred HHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHc--CCCeEEecCCcccCChhhHHHHHHHHHHH
Confidence 122333333321100 0001 112338899999999999 99999999994443333333344455443
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhhh
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYS 169 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (175)
-+|+|+ +++||++..+ +.+|+|+++++|..+-+++|.
T Consensus 521 -~~~kTl----l~vTHrL~~l-e~~drIivl~~Gkiie~G~~~ 557 (573)
T COG4987 521 -AEGKTL----LMVTHRLRGL-ERMDRIIVLDNGKIIEEGTHA 557 (573)
T ss_pred -hcCCeE----EEEecccccH-hhcCEEEEEECCeeeecCCHH
Confidence 358999 9999999988 556999999999888777764
No 341
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.89 E-value=6.1e-23 Score=182.17 Aligned_cols=149 Identities=11% Similarity=0.057 Sum_probs=99.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCc---ccccCCCCccCCcccccc-----------------HH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAENFDYPVAMDIRELIS-----------------LE 60 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~---~~~~~~~~~~~~~~~~~~-----------------~~ 60 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.+++... -.++....+ .+.++++. ..
T Consensus 477 ~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~ 555 (659)
T TIGR00954 477 SGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTL-GTLRDQIIYPDSSEDMKRRGLSDKDLE 555 (659)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCC-cCHHHHHhcCCChhhhhccCCCHHHHH
Confidence 5999999999999999999999999999999998864320 011111111 12222211 23
Q ss_pred HHHHHhCCCCCCchh---------hhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCC
Q 030541 61 DVMEELGLGPNGGLI---------YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 61 ~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
++++.+++....... ...-+.+|+||..++|++.+ +|++++||||+...+....+.+.+.+ ++.|.
T Consensus 556 ~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~--~p~illLDEpts~LD~~~~~~l~~~l---~~~~~ 630 (659)
T TIGR00954 556 QILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYH--KPQFAILDECTSAVSVDVEGYMYRLC---REFGI 630 (659)
T ss_pred HHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHHHHH---HHcCC
Confidence 445555543221110 01123348999999999999 99999999994444444344444444 34588
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccc
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
|+ +++||+++.+ +++|+++.+++.
T Consensus 631 tv----I~isH~~~~~-~~~d~il~l~~~ 654 (659)
T TIGR00954 631 TL----FSVSHRKSLW-KYHEYLLYMDGR 654 (659)
T ss_pred EE----EEEeCchHHH-HhCCEEEEEeCC
Confidence 99 9999999986 779999999753
No 342
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.89 E-value=3.1e-23 Score=195.84 Aligned_cols=161 Identities=13% Similarity=0.072 Sum_probs=117.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccC----ccccceEEEeecCccc------ccCCCC-------ccCCccccccH----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHC----ETVRRTMHIVNLDPAA------ENFDYP-------VAMDIRELISL---- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~----~~~~G~I~i~g~~~~~------~~~~~~-------~~~~~~~~~~~---- 59 (175)
+||+++|+||||||||||+|+|+|+. +|++|+|.++|.++.. ..++|. +.+++++.+..
T Consensus 86 ~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~ 165 (1394)
T TIGR00956 86 PGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARC 165 (1394)
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHh
Confidence 49999999999999999999999986 5789999999976421 112222 22233332210
Q ss_pred --------------------HHHHHHhCCCCCCchhh-----hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccc
Q 030541 60 --------------------EDVMEELGLGPNGGLIY-----CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFT 114 (175)
Q Consensus 60 --------------------~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~ 114 (175)
..+++.+++........ ..-+.+|++|..+++++.. +|++++||||+...+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~--~p~vlllDEPTsgLD~~ 243 (1394)
T TIGR00956 166 KTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLG--GAKIQCWDNATRGLDSA 243 (1394)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHh--CCCEEEEeCCCCCcCHH
Confidence 12344455543221110 1112338999999999999 99999999997776677
Q ss_pred cchhHHHHHHHHHh-CCCcEEEEeeeehhch-hhhhcCCcceeEeccchhhHHhh
Q 030541 115 HVPVLRNFVDHLKS-RNFNVCAVYLLDSQVC-IRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 115 ~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~-~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
....+.+.|+++++ .|.|| ++++|+. +++.+++|+++++..|..++++.
T Consensus 244 ~~~~i~~~L~~la~~~g~tv----ii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 244 TALEFIRALKTSANILDTTP----LVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred HHHHHHHHHHHHHHhcCCEE----EEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 77788889999976 48999 9999996 78999999999999998877644
No 343
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.89 E-value=4.4e-23 Score=195.27 Aligned_cols=152 Identities=16% Similarity=0.113 Sum_probs=106.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc----------------------------------------------------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET---------------------------------------------------- 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~---------------------------------------------------- 28 (175)
+|+++||+||||||||||+++|+|+++|
T Consensus 1193 ~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1272 (1466)
T PTZ00265 1193 SKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTV 1272 (1466)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5999999999999999999999999998
Q ss_pred --ccceEEEeecCccc-------ccCCCCc------cCCcccccc----------HHHHHHHhCCCC---------C--C
Q 030541 29 --VRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS----------LEDVMEELGLGP---------N--G 72 (175)
Q Consensus 29 --~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~----------~~~~~~~~~l~~---------~--~ 72 (175)
++|+|.++|.+++. +.+++++ ..+.++++. ...+++..++.. . .
T Consensus 1273 ~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~V 1352 (1466)
T PTZ00265 1273 FKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNV 1352 (1466)
T ss_pred CCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCcc
Confidence 69999999988643 2344443 123333322 111122111110 0 0
Q ss_pred chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH-hCCCcEEEEeeeehhchhhhhcCC
Q 030541 73 GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQVCIRFRTLP 151 (175)
Q Consensus 73 ~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-~~g~tvli~~l~~sH~~~~~~~~~ 151 (175)
...-..-+.+|+||.+|||++.+ +|++||||||+...+......+.+.|.++. .+++|+ ++++|+++.+ +.+
T Consensus 1353 Ge~G~~LSGGQkQRIaIARALlr--~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~Tv----IiIaHRlsti-~~a 1425 (1466)
T PTZ00265 1353 GPYGKSLSGGQKQRIAIARALLR--EPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTI----ITIAHRIASI-KRS 1425 (1466)
T ss_pred CCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEE----EEEechHHHH-HhC
Confidence 00000112349999999999999 999999999955555555556667777775 368999 9999999877 458
Q ss_pred cceeEecc
Q 030541 152 PCIVCFCC 159 (175)
Q Consensus 152 ~~~~~~~~ 159 (175)
|++++++.
T Consensus 1426 D~Ivvl~~ 1433 (1466)
T PTZ00265 1426 DKIVVFNN 1433 (1466)
T ss_pred CEEEEEeC
Confidence 99999998
No 344
>PLN03073 ABC transporter F family; Provisional
Probab=99.88 E-value=4.3e-23 Score=184.14 Aligned_cols=159 Identities=15% Similarity=0.165 Sum_probs=106.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccC---ccccceEEEeecCccccc---------------------CCCCcc------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHC---ETVRRTMHIVNLDPAAEN---------------------FDYPVA------ 50 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~---~~~~G~I~i~g~~~~~~~---------------------~~~~~~------ 50 (175)
+|+++||+||||||||||+|+|+|.. .|++|+|.+.++.+.... .++.+.
T Consensus 202 ~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~ 281 (718)
T PLN03073 202 FGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEF 281 (718)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 49999999999999999999999864 578999987554321100 000000
Q ss_pred --CC-----------ccccc---------------------cHHHHHHHhCCCCCCchhhhHHHH--HHHHHHHHHHHhh
Q 030541 51 --MD-----------IRELI---------------------SLEDVMEELGLGPNGGLIYCMEHL--EDNLDDWLAEELD 94 (175)
Q Consensus 51 --~~-----------~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~l~~~l~ 94 (175)
.. ..+.. ....+++.+++.... .......+ .+++|..|++++.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~-~~~~~~~LSgG~k~rv~LA~aL~ 360 (718)
T PLN03073 282 ETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEM-QVKATKTFSGGWRMRIALARALF 360 (718)
T ss_pred cccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHH-HhCchhhCCHHHHHHHHHHHHHh
Confidence 00 00000 011233334443111 11122333 4899999999999
Q ss_pred ccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhh-HHhhhh
Q 030541 95 NYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV-VQRAYS 169 (175)
Q Consensus 95 ~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 169 (175)
. +|++|+||||+...+..+..++.++|+++ +.|| +++||+.+++..+|++++++..+..+ +.++|.
T Consensus 361 ~--~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tv----iivsHd~~~l~~~~d~i~~l~~g~i~~~~g~~~ 427 (718)
T PLN03073 361 I--EPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTF----IVVSHAREFLNTVVTDILHLHGQKLVTYKGDYD 427 (718)
T ss_pred c--CCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEE----EEEECCHHHHHHhCCEEEEEECCEEEEeCCCHH
Confidence 9 99999999996666666666776677665 6799 99999999999999999999988764 444444
No 345
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.88 E-value=1.8e-22 Score=157.86 Aligned_cols=77 Identities=13% Similarity=-0.019 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhhccCCC--CEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEe-
Q 030541 81 LEDNLDDWLAEELDNYLDD--DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCF- 157 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~~~~p--~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~- 157 (175)
..++|+..+++++.. +| ++++||||+...+....+.+.+++++++++|.|+ +++||+++++ .+||+++++
T Consensus 140 gG~~qrv~laral~~--~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~ti----i~itH~~~~~-~~~d~i~~l~ 212 (226)
T cd03270 140 GGEAQRIRLATQIGS--GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTV----LVVEHDEDTI-RAADHVIDIG 212 (226)
T ss_pred HHHHHHHHHHHHHHh--CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEE----EEEEeCHHHH-HhCCEEEEeC
Confidence 348999999999998 87 5999999966666667778888899887789999 9999999987 589999999
Q ss_pred -----ccchhhH
Q 030541 158 -----CCTHTVV 164 (175)
Q Consensus 158 -----~~~~~~~ 164 (175)
+.|..+.
T Consensus 213 ~~~~~~~G~iv~ 224 (226)
T cd03270 213 PGAGVHGGEIVA 224 (226)
T ss_pred CCccccCCEEEe
Confidence 5555443
No 346
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.4e-22 Score=176.33 Aligned_cols=159 Identities=18% Similarity=0.101 Sum_probs=111.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccc-------cCCCCc------cCCcccccc-------H-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDYPV------AMDIRELIS-------L- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~-------~~~~~~------~~~~~~~~~-------~- 59 (175)
.||++||+||||+||||+.+.|..++.|++|+|.+||.|+++- .++++. .-++.+++. .
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e 572 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDE 572 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHH
Confidence 4999999999999999999999999999999999999987542 222221 113333332 1
Q ss_pred -----------HHHHHHhCCCCCCchhhh--HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 60 -----------EDVMEELGLGPNGGLIYC--MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 60 -----------~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
.+...++.-+.+-.-... .-+-.||||.+||||+.+ +|.+|||||.+...+.+....+++.+.++
T Consensus 573 ~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr--~P~VLILDEATSALDaeSE~lVq~aL~~~ 650 (716)
T KOG0058|consen 573 EIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLR--NPRVLILDEATSALDAESEYLVQEALDRL 650 (716)
T ss_pred HHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhc--CCCEEEEechhhhcchhhHHHHHHHHHHh
Confidence 111222211111000001 112349999999999999 99999999995444455445566667665
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.+ ++|| +++.|++.-+ +.+|+|++++.|.++-+++
T Consensus 651 ~~-~rTV----lvIAHRLSTV-~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 651 MQ-GRTV----LVIAHRLSTV-RHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred hc-CCeE----EEEehhhhHh-hhccEEEEEcCCeEEeccc
Confidence 44 5999 9999999988 6789999999999887764
No 347
>PLN03140 ABC transporter G family member; Provisional
Probab=99.88 E-value=5e-23 Score=194.52 Aligned_cols=161 Identities=14% Similarity=0.079 Sum_probs=116.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccc---cceEEEeecCccc----ccCCCC-------ccCCccccccH-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA----ENFDYP-------VAMDIRELISL------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~---~G~I~i~g~~~~~----~~~~~~-------~~~~~~~~~~~------- 59 (175)
+||+++|+||||||||||+|+|+|..+|+ +|+|.++|.+... +.++|. +.+++++.+..
T Consensus 190 ~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~ 269 (1470)
T PLN03140 190 PSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGV 269 (1470)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCC
Confidence 49999999999999999999999999998 9999999976421 112222 22233332211
Q ss_pred -------------------------------------------HHHHHHhCCCCCCch---hhhHHHH--HHHHHHHHHH
Q 030541 60 -------------------------------------------EDVMEELGLGPNGGL---IYCMEHL--EDNLDDWLAE 91 (175)
Q Consensus 60 -------------------------------------------~~~~~~~~l~~~~~~---~~~~~~~--~~~~~~~l~~ 91 (175)
..+++.+++...... ......+ .|++|..+++
T Consensus 270 ~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~ 349 (1470)
T PLN03140 270 GTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGE 349 (1470)
T ss_pred CCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehh
Confidence 123344444321100 0011123 3788899999
Q ss_pred HhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh-CCCcEEEEeeeehhch-hhhhcCCcceeEeccchhhHHhh
Q 030541 92 ELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQVC-IRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 92 ~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~-~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++.. +|+++++|||+...+......+.+.|+++++ .|.|+ ++++|+. .++.+++|++++|..|+.++++.
T Consensus 350 aL~~--~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tv----iis~Hqp~~~i~~lfD~vilL~~G~ivy~G~ 421 (1470)
T PLN03140 350 MIVG--PTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATV----LMSLLQPAPETFDLFDDIILLSEGQIVYQGP 421 (1470)
T ss_pred hhcC--CCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEE----EEEecCCCHHHHHHhheEEEeeCceEEEeCC
Confidence 9999 9999999999666666667777789999865 58999 9999986 68999999999999999887754
No 348
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.88 E-value=1.5e-22 Score=174.63 Aligned_cols=161 Identities=16% Similarity=0.093 Sum_probs=111.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecC-c--ccccC-CCCccCCcccc----------ccHHHHHHHh
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENF-DYPVAMDIREL----------ISLEDVMEEL 66 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~--~~~~~-~~~~~~~~~~~----------~~~~~~~~~~ 66 (175)
.|+.+||+||||+|||||+|+|+|...|.+|+|.+...- + -.+.. .+....++.+. -.....+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 489999999999999999999999999999999874321 0 00111 11111122111 2245677778
Q ss_pred CCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhch
Q 030541 67 GLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVC 144 (175)
Q Consensus 67 ~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~ 144 (175)
+|..... ..+...+| ++.|..|++.+.. .|.+||||||+...+...++.+.+.|. .-..|| +++|||-
T Consensus 427 ~F~~~~~-~~~v~~LSGGEk~Rl~La~ll~~--~pNvLiLDEPTNhLDi~s~~aLe~aL~---~f~Gtv----l~VSHDr 496 (530)
T COG0488 427 GFTGEDQ-EKPVGVLSGGEKARLLLAKLLLQ--PPNLLLLDEPTNHLDIESLEALEEALL---DFEGTV----LLVSHDR 496 (530)
T ss_pred CCChHHH-hCchhhcCHhHHHHHHHHHHhcc--CCCEEEEcCCCccCCHHHHHHHHHHHH---hCCCeE----EEEeCCH
Confidence 8876542 33344455 8999999999999 999999999955555554444444444 445699 9999999
Q ss_pred hhhhcCCcceeEeccchhhHHhhhhcc
Q 030541 145 IRFRTLPPCIVCFCCTHTVVQRAYSFL 171 (175)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (175)
..+...+++++.+....+.+.++|.-|
T Consensus 497 ~Fl~~va~~i~~~~~~~~~~~g~y~~y 523 (530)
T COG0488 497 YFLDRVATRIWLVEDKVEEFEGGYEDY 523 (530)
T ss_pred HHHHhhcceEEEEcCceeEcCCCHHHH
Confidence 999999999999998444444555443
No 349
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.2e-22 Score=171.91 Aligned_cols=156 Identities=15% Similarity=0.035 Sum_probs=107.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCccCCcccccc---------------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELIS--------------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~--------------- 58 (175)
+||-+||+|+|||||||++|+|.++.. ++|+|.++|.++++ +.+++.| |....|.
T Consensus 377 kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VP--Qd~~LFndTIl~NI~YGn~sas 453 (591)
T KOG0057|consen 377 KGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVP--QDSVLFNDTILYNIKYGNPSAS 453 (591)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeC--CcccccchhHHHHhhcCCCCcC
Confidence 599999999999999999999999999 89999999998643 3445555 2221221
Q ss_pred ---HHHHHHHhCCCCCC-----chh----hhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHH
Q 030541 59 ---LEDVMEELGLGPNG-----GLI----YCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 ---~~~~~~~~~l~~~~-----~~~----~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..++++..++.+-- ... .... +..|+|+.+++|++.+ |||++++|||+...+.+.-..+.+.+.
T Consensus 454 ~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK--da~Il~~DEaTS~LD~~TE~~i~~~i~ 531 (591)
T KOG0057|consen 454 DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK--DAPILLLDEATSALDSETEREILDMIM 531 (591)
T ss_pred HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc--CCCeEEecCcccccchhhHHHHHHHHH
Confidence 12333333332110 000 0111 2238999999999999 999999999944444443333333444
Q ss_pred HHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 125 HLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 125 ~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
. ...++|+ +++-|++..+ +.+|.+++++++.+.-+++
T Consensus 532 ~-~~~~rTv----I~IvH~l~ll-~~~DkI~~l~nG~v~e~gt 568 (591)
T KOG0057|consen 532 D-VMSGRTV----IMIVHRLDLL-KDFDKIIVLDNGTVKEYGT 568 (591)
T ss_pred H-hcCCCeE----EEEEecchhH-hcCCEEEEEECCeeEEecc
Confidence 4 3468999 9999998866 6679999999998765554
No 350
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.88 E-value=1.6e-22 Score=192.40 Aligned_cols=159 Identities=16% Similarity=0.043 Sum_probs=111.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.+||+|++|||||||+++|.|+++|++|+|.++|.|+.. ..+++.+ .-+.++++.
T Consensus 1311 ~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdee 1390 (1522)
T TIGR00957 1311 GGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEE 1390 (1522)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHH
Confidence 499999999999999999999999999999999999988643 2223222 113443332
Q ss_pred HHHHHHHhCCCCCC-----chh----h--hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 LEDVMEELGLGPNG-----GLI----Y--CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 ~~~~~~~~~l~~~~-----~~~----~--~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++..++.... ... . ..-+.+|+|+..|||++.+ +|++|+||||+...+......+.+.|++.
T Consensus 1391 i~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr--~~~ILiLDEaTSalD~~Te~~Iq~~l~~~- 1467 (1522)
T TIGR00957 1391 VWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR--KTKILVLDEATAAVDLETDNLIQSTIRTQ- 1467 (1522)
T ss_pred HHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHHHHHHHH-
Confidence 12233332221100 000 0 1123359999999999999 99999999995555555455666667664
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.+++|| ++++|+++.+.+ +|++++|+.|..+-+++
T Consensus 1468 ~~~~Tv----I~IAHRl~ti~~-~DrIlVld~G~IvE~G~ 1502 (1522)
T TIGR00957 1468 FEDCTV----LTIAHRLNTIMD-YTRVIVLDKGEVAEFGA 1502 (1522)
T ss_pred cCCCEE----EEEecCHHHHHh-CCEEEEEECCEEEEECC
Confidence 357899 999999998876 69999999888764443
No 351
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.88 E-value=1.6e-22 Score=192.04 Aligned_cols=158 Identities=15% Similarity=0.032 Sum_probs=104.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecC-cccccCCCCccCCcccccc---------HHHHHHHhCC--
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGL-- 68 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l-- 68 (175)
+|++++|+||||||||||+++|+|+++|++|+|.++|.- ...+... .+..++++++. ..++++..++
T Consensus 451 ~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~-l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~ 529 (1490)
T TIGR01271 451 KGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSW-IMPGTIKDNIIFGLSYDEYRYTSVIKACQLEE 529 (1490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCc-cCCccHHHHHHhccccchHHHHHHHHHHhHHH
Confidence 599999999999999999999999999999999998731 1111211 11123443332 1122221111
Q ss_pred ----CCCCc-----hhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHH-HHHHHHhCCCcEEEEee
Q 030541 69 ----GPNGG-----LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN-FVDHLKSRNFNVCAVYL 138 (175)
Q Consensus 69 ----~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~-~l~~l~~~g~tvli~~l 138 (175)
.+... .....-+.+|+||..|+|++.. +|++++||||....+......+.+ ++..+. +++|+ +
T Consensus 530 ~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~--~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tv----i 602 (1490)
T TIGR01271 530 DIALFPEKDKTVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTR----I 602 (1490)
T ss_pred HHHhccccccccccCcCCCcCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeE----E
Confidence 01000 0001123349999999999999 999999999944433443444443 455553 48999 9
Q ss_pred eehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 139 LDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++||+++.+.. +|+++++..+..+.+++
T Consensus 603 lvtH~~~~~~~-ad~ii~l~~g~i~~~g~ 630 (1490)
T TIGR01271 603 LVTSKLEHLKK-ADKILLLHEGVCYFYGT 630 (1490)
T ss_pred EEeCChHHHHh-CCEEEEEECCEEEEEcC
Confidence 99999998864 99999999887654443
No 352
>PTZ00243 ABC transporter; Provisional
Probab=99.87 E-value=2.7e-22 Score=191.03 Aligned_cols=158 Identities=14% Similarity=0.075 Sum_probs=110.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.+||+|++|||||||+++|.|+++|++|+|.++|.++.. +.+++.+ .-++++++.
T Consensus 1335 ~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdee 1414 (1560)
T PTZ00243 1335 PREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAE 1414 (1560)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHH
Confidence 599999999999999999999999999999999999988643 2233322 223444332
Q ss_pred HHHHHHHhCCCCCC-----chh----h--hHHHHHHHHHHHHHHHhhccCC-CCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 LEDVMEELGLGPNG-----GLI----Y--CMEHLEDNLDDWLAEELDNYLD-DDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ~~~~~~~~~l~~~~-----~~~----~--~~~~~~~~~~~~l~~~l~~~~~-p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++..++.... ... . ..-+.+|+|+..|||++.+ + |++||||||+...+......+.+.|++.
T Consensus 1415 I~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~--~~~~ILlLDEATSaLD~~te~~Iq~~L~~~ 1492 (1560)
T PTZ00243 1415 VWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK--KGSGFILMDEATANIDPALDRQIQATVMSA 1492 (1560)
T ss_pred HHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc--CCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 12333433332110 000 0 1123349999999999998 7 8999999995555555455566667664
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHh
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.+++|| ++++|+++.+.+ +|++++|+.|.++-++
T Consensus 1493 -~~~~Tv----I~IAHRl~ti~~-~DrIlVLd~G~VvE~G 1526 (1560)
T PTZ00243 1493 -FSAYTV----ITIAHRLHTVAQ-YDKIIVMDHGAVAEMG 1526 (1560)
T ss_pred -CCCCEE----EEEeccHHHHHh-CCEEEEEECCEEEEEC
Confidence 347899 999999988754 7999999988876443
No 353
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.87 E-value=5.4e-22 Score=152.29 Aligned_cols=150 Identities=11% Similarity=0.039 Sum_probs=96.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCcccc---------ceEEEeecCccc----ccCCCCccCCccccc---cHHHHHHH
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVR---------RTMHIVNLDPAA----ENFDYPVAMDIRELI---SLEDVMEE 65 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~---------G~I~i~g~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~ 65 (175)
| +++|+||||||||||+++|+|+.++.. |++.+.|.+... ..+++.+. +...++ ....+.+.
T Consensus 23 g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq-~~~~~~~~~~~~~~~~~ 100 (197)
T cd03278 23 G-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFD-NSDGRYSIISQGDVSEI 100 (197)
T ss_pred C-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEE-cCCCceeEEehhhHHHH
Confidence 6 899999999999999999999987653 356666655321 22233331 111111 11222222
Q ss_pred hCCCCCCchhhhHHHHHHHHHHHHHHHhhc--cCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhc
Q 030541 66 LGLGPNGGLIYCMEHLEDNLDDWLAEELDN--YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQV 143 (175)
Q Consensus 66 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~ 143 (175)
+............-+..++++..++++++. +.+|++++||||...........+.++++++++ +.|| +++||+
T Consensus 101 l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~ti----IiitH~ 175 (197)
T cd03278 101 IEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK-ETQF----IVITHR 175 (197)
T ss_pred HhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-CCEE----EEEECC
Confidence 222221112222223348888999997752 126799999999666666667778888888855 6788 999999
Q ss_pred hhhhhcCCcceeEecc
Q 030541 144 CIRFRTLPPCIVCFCC 159 (175)
Q Consensus 144 ~~~~~~~~~~~~~~~~ 159 (175)
++.+ +++|+++.+..
T Consensus 176 ~~~~-~~~d~v~~~~~ 190 (197)
T cd03278 176 KGTM-EAADRLYGVTM 190 (197)
T ss_pred HHHH-hhcceEEEEEe
Confidence 9876 58998877654
No 354
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.86 E-value=5.2e-22 Score=174.62 Aligned_cols=162 Identities=17% Similarity=0.136 Sum_probs=120.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc---ccceEEEeecCccc-----------ccCCCCccCCcccccc--------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDPAA-----------ENFDYPVAMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~---~~G~I~i~g~~~~~-----------~~~~~~~~~~~~~~~~-------- 58 (175)
.||+.||+||+|||||||+++|+|-... .+|+|.++|+.... |+..+.+.+++++.+.
T Consensus 55 ~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp 134 (613)
T KOG0061|consen 55 PGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLP 134 (613)
T ss_pred cCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCC
Confidence 3999999999999999999999999874 78999999955322 2333455556665543
Q ss_pred -----------HHHHHHHhCCCCCCchhh-----hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHH
Q 030541 59 -----------LEDVMEELGLGPNGGLIY-----CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
.+++++++++..-..... +.-+.+|+.|..++..+.. +|+++++|||+...+-.....+.+.
T Consensus 135 ~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~--~P~iLflDEPTSGLDS~sA~~vv~~ 212 (613)
T KOG0061|consen 135 SSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLT--DPSILFLDEPTSGLDSFSALQVVQL 212 (613)
T ss_pred CCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHc--CCCEEEecCCCCCcchhhHHHHHHH
Confidence 345666666652111111 1122348899999999999 9999999999544444445566679
Q ss_pred HHHHHhCCCcEEEEeeeehhch-hhhhcCCcceeEeccchhhHHhhh
Q 030541 123 VDHLKSRNFNVCAVYLLDSQVC-IRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~-~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
|++++++|+|| +++-|+. .++-++.|++.+|+.|.+++++..
T Consensus 213 Lk~lA~~grtV----i~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~ 255 (613)
T KOG0061|consen 213 LKRLARSGRTV----ICTIHQPSSELFELFDKLLLLSEGEVVYSGSP 255 (613)
T ss_pred HHHHHhCCCEE----EEEEeCCcHHHHHHHhHhhhhcCCcEEEecCH
Confidence 99998889999 8888887 467788899999999999998854
No 355
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.86 E-value=7.6e-22 Score=187.90 Aligned_cols=160 Identities=19% Similarity=0.148 Sum_probs=104.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecC-cccccCCCCccCCcccccc---------HHHHHHH-----
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEE----- 65 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~----- 65 (175)
+|++++|+||||||||||+++|+|+++|++|+|.++|.- ...++. +.+..++++++. ..++++.
T Consensus 663 ~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~-~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~ 741 (1522)
T TIGR00957 663 EGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQA-WIQNDSLRENILFGKALNEKYYQQVLEACALLP 741 (1522)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCc-cccCCcHHHHhhcCCccCHHHHHHHHHHhCCHH
Confidence 599999999999999999999999999999999998731 111111 122224444332 1122221
Q ss_pred -hCCCCCC-----chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH--HhCCCcEEEEe
Q 030541 66 -LGLGPNG-----GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL--KSRNFNVCAVY 137 (175)
Q Consensus 66 -~~l~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l--~~~g~tvli~~ 137 (175)
++..+.. ......-+.+|+||..|||++.. +|++++||||....+......+.+.+... ..+++|+
T Consensus 742 ~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~--~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tv---- 815 (1522)
T TIGR00957 742 DLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS--NADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTR---- 815 (1522)
T ss_pred HHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEE----
Confidence 1111110 00001123349999999999999 99999999994443344344444444322 1357899
Q ss_pred eeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 138 LLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 138 l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
+++||+++.+.. +|++++++.|..+.++++
T Consensus 816 IlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~ 845 (1522)
T TIGR00957 816 ILVTHGISYLPQ-VDVIIVMSGGKISEMGSY 845 (1522)
T ss_pred EEEeCChhhhhh-CCEEEEecCCeEEeeCCH
Confidence 999999998865 999999998877655443
No 356
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.86 E-value=3.2e-22 Score=144.24 Aligned_cols=105 Identities=25% Similarity=0.267 Sum_probs=74.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc-------cCCccccc---cHHHHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV-------AMDIRELI---SLEDVM 63 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~-------~~~~~~~~---~~~~~~ 63 (175)
+|++++|+|+||||||||+++|+|+.+|++|+|.++|.++.. ..+++.+ ..++.++. ....++
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~~l 89 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEEVL 89 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHHHH
T ss_pred CCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 599999999999999999999999999999999999876533 1222222 12222221 134566
Q ss_pred HHhCCCCCCchhh----hHHHHHHHHHHHHHHHhhccCCCCEEEEeCC
Q 030541 64 EELGLGPNGGLIY----CMEHLEDNLDDWLAEELDNYLDDDYLVFDCP 107 (175)
Q Consensus 64 ~~~~l~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP 107 (175)
+.+++........ ..-+..++++..+++++.. +|++++||||
T Consensus 90 ~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~--~~~llllDEP 135 (137)
T PF00005_consen 90 KKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLK--NPKLLLLDEP 135 (137)
T ss_dssp HHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHT--TSSEEEEEST
T ss_pred cccccccccccccccccchhhHHHHHHHHHHHHHHc--CCCEEEEeCC
Confidence 6665543211111 2223448999999999999 9999999999
No 357
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=2.9e-21 Score=143.74 Aligned_cols=162 Identities=14% Similarity=0.058 Sum_probs=119.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc----------------ccCCCCccCCcccccc------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------------ENFDYPVAMDIRELIS------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------------~~~~~~~~~~~~~~~~------ 58 (175)
+||++||+|++|||||||++||++-+.|+.|+|.+...+-+. -++++.. .++.+-+.
T Consensus 31 PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~Vh-QnP~DGLRm~VSAG 109 (258)
T COG4107 31 PGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVH-QNPRDGLRMQVSAG 109 (258)
T ss_pred CCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceee-cCccccceeeeccC
Confidence 499999999999999999999999999999999986432100 1222221 11111110
Q ss_pred ---------------------HHHHHHHhCCCCCCchhhh-HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccc
Q 030541 59 ---------------------LEDVMEELGLGPNGGLIYC-MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHV 116 (175)
Q Consensus 59 ---------------------~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~ 116 (175)
..++++.+++........+ ..+-.++||.-++|.+.. .|.++++|||+...+.+-.
T Consensus 110 ~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt--~PrLvfMDEPTGGLDVSVQ 187 (258)
T COG4107 110 GNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVT--RPRLVFMDEPTGGLDVSVQ 187 (258)
T ss_pred CccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhcc--CCceEEecCCCCCcchhhH
Confidence 3567777777654322211 123348899999999999 9999999999666666666
Q ss_pred hhHHHHHHHHH-hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhhh
Q 030541 117 PVLRNFVDHLK-SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYS 169 (175)
Q Consensus 117 ~~~~~~l~~l~-~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (175)
..+..+++.+. +-+.++ +++||++..+.-+++++.+|..+.++-++=++
T Consensus 188 ARLLDllrgLv~~l~la~----viVTHDl~VarLla~rlmvmk~g~vve~GLTD 237 (258)
T COG4107 188 ARLLDLLRGLVRELGLAV----VIVTHDLAVARLLADRLMVMKQGQVVESGLTD 237 (258)
T ss_pred HHHHHHHHHHHHhcCceE----EEEechhHHHHHhhhcceeecCCCEecccccc
Confidence 67777888874 558899 99999999999999999999999888765443
No 358
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.86 E-value=1.5e-22 Score=150.61 Aligned_cols=161 Identities=16% Similarity=0.130 Sum_probs=108.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------------ccCCCCccCCcccccc---------
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS--------- 58 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------------~~~~~~~~~~~~~~~~--------- 58 (175)
||++-+|||||||||||+-.++|+++ .+|+|.++|.+... ++..-.+.+.++.++.
T Consensus 25 Ge~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a 103 (248)
T COG4138 25 GEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRT 103 (248)
T ss_pred ceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHH
Confidence 89999999999999999999999985 69999999988532 1111111122222222
Q ss_pred --HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhcc---CCC--CEEEEeCCCcccccccchhHHHHHHHHHhCCC
Q 030541 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNY---LDD--DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 59 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~p--~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
...+...+.++.+..+....-+-.+.||..++-...+. .+| +++++|||....+......+-.++.+++..|.
T Consensus 104 ~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~ 183 (248)
T COG4138 104 ELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGL 183 (248)
T ss_pred HHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCc
Confidence 34566667776655443322222367776666544432 244 59999999222222222234457888889999
Q ss_pred cEEEEeeeehhchhhhhcCCcceeEeccchhhHHhh
Q 030541 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+| +|++||+......+++++++..|..+.+++
T Consensus 184 ~v----ims~HDLNhTLrhA~~~wLL~rG~l~~~G~ 215 (248)
T COG4138 184 AI----VMSSHDLNHTLRHAHRAWLLKRGKLLASGR 215 (248)
T ss_pred EE----EEeccchhhHHHHHHHHHHHhcCeEEeecc
Confidence 99 999999999999999999888877665543
No 359
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.86 E-value=7e-22 Score=153.19 Aligned_cols=158 Identities=13% Similarity=0.018 Sum_probs=96.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhc-cCccccceEEEeec------CcccccCCCCccC-----Cccc--cccHHHHHHH-
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNL------DPAAENFDYPVAM-----DIRE--LISLEDVMEE- 65 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~g-l~~~~~G~I~i~g~------~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~- 65 (175)
+|++++|+||||||||||+++|++ ++.+..+....... ......+.+.+.. .... -+...++.+.
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~~ 106 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLDYDQFTRIV 106 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCCCHHHHHHhh
Confidence 378999999999999999999996 44444444332100 0011111111100 0000 0111112111
Q ss_pred ----hCCCCCCchhhhHHHHHHHHHHHHHHHhhc---c-----CCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcE
Q 030541 66 ----LGLGPNGGLIYCMEHLEDNLDDWLAEELDN---Y-----LDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNV 133 (175)
Q Consensus 66 ----~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~---~-----~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tv 133 (175)
..+..........-+..++++..++++++. + .+|++++||||....+....+.+.+.++++++++.|+
T Consensus 107 ~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~ti 186 (213)
T cd03279 107 LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMV 186 (213)
T ss_pred hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 111111111111123347888999998863 0 1678999999966665666667778888887778999
Q ss_pred EEEeeeehhchhhhhcCCcceeEeccchh
Q 030541 134 CAVYLLDSQVCIRFRTLPPCIVCFCCTHT 162 (175)
Q Consensus 134 li~~l~~sH~~~~~~~~~~~~~~~~~~~~ 162 (175)
+++||+++.+..+++++.++..+-+
T Consensus 187 ----i~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 187 ----GVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred ----EEEECchHHHHhhCcEEEEEecCCC
Confidence 9999999999999999999987654
No 360
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.86 E-value=1.7e-21 Score=185.08 Aligned_cols=156 Identities=19% Similarity=0.148 Sum_probs=110.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCc------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.+||+|++|||||||+++|+|+++ .+|+|.++|.++.. +.+++.+ .-++++++.
T Consensus 1244 ~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdee 1322 (1490)
T TIGR01271 1244 GGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEE 1322 (1490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHH
Confidence 499999999999999999999999997 79999999988642 1222222 224444442
Q ss_pred HHHHHHHhCCCCCC-----chhh----h--HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 59 LEDVMEELGLGPNG-----GLIY----C--MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 ~~~~~~~~~l~~~~-----~~~~----~--~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++..++.... .... . .-+.+|+|+..|+|++.+ +|++|+||||+...+......+.+.|++.
T Consensus 1323 i~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr--~~~ILlLDEaTS~lD~~Te~~I~~~L~~~- 1399 (1490)
T TIGR01271 1323 IWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS--KAKILLLDEPSAHLDPVTLQIIRKTLKQS- 1399 (1490)
T ss_pred HHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC--CCCEEEEeCCcccCCHHHHHHHHHHHHHH-
Confidence 23344444332110 0000 0 113358999999999999 99999999995555555555666667665
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHH
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
.+++|| ++++|+++.+.+ +|++++|+.|+++-.
T Consensus 1400 ~~~~Tv----I~IaHRl~ti~~-~DrIlvL~~G~ivE~ 1432 (1490)
T TIGR01271 1400 FSNCTV----ILSEHRVEALLE-CQQFLVIEGSSVKQY 1432 (1490)
T ss_pred cCCCEE----EEEecCHHHHHh-CCEEEEEECCEEEEe
Confidence 347899 999999998876 899999999887643
No 361
>PTZ00243 ABC transporter; Provisional
Probab=99.85 E-value=2.3e-21 Score=184.67 Aligned_cols=160 Identities=16% Similarity=0.061 Sum_probs=101.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecC-cccccCCCCccCCccccccH---------HHHHH------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELISL---------EDVME------ 64 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~------ 64 (175)
+|++++|+||||||||||+++|+|+++|++|+|.+.+.- ...+... .+..++++++.. .++++
T Consensus 685 ~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~-l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~ 763 (1560)
T PTZ00243 685 RGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAW-IMNATVRGNILFFDEEDAARLADAVRVSQLEA 763 (1560)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCc-cCCCcHHHHHHcCChhhHHHHHHHHHHhhhHH
Confidence 599999999999999999999999999999999874311 0111111 122244433321 11111
Q ss_pred ---Hh--CCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH-HHHHHHHHhCCCcEEEEee
Q 030541 65 ---EL--GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL-RNFVDHLKSRNFNVCAVYL 138 (175)
Q Consensus 65 ---~~--~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~-~~~l~~l~~~g~tvli~~l 138 (175)
.+ ++..........-+.+|+||..|+|++.. +|++++||||....+......+ ..++... .+|+|+ +
T Consensus 764 ~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~--~p~illLDEP~saLD~~~~~~i~~~~~~~~-~~~~Tv----I 836 (1560)
T PTZ00243 764 DLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYA--NRDVYLLDDPLSALDAHVGERVVEECFLGA-LAGKTR----V 836 (1560)
T ss_pred HHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHHHHHHHHh-hCCCEE----E
Confidence 11 11110000111122348999999999999 9999999999333222222222 2233222 258899 9
Q ss_pred eehhchhhhhcCCcceeEeccchhhHHhhhh
Q 030541 139 LDSQVCIRFRTLPPCIVCFCCTHTVVQRAYS 169 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (175)
++||+++.+ ..+|++++|+.|..+.++++.
T Consensus 837 lvTH~~~~~-~~ad~ii~l~~G~i~~~G~~~ 866 (1560)
T PTZ00243 837 LATHQVHVV-PRADYVVALGDGRVEFSGSSA 866 (1560)
T ss_pred EEeCCHHHH-HhCCEEEEEECCEEEEecCHH
Confidence 999999988 579999999998877666554
No 362
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.85 E-value=2.1e-21 Score=159.86 Aligned_cols=166 Identities=17% Similarity=0.168 Sum_probs=122.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc-----ccceEEEeecCccc-----------ccCCC---------CccCCccc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-----------ENFDY---------PVAMDIRE 55 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~-----------~~~~~---------~~~~~~~~ 55 (175)
.||+++|+|++|||||-..+.|.++++. -+|+|.++|.+... ..++. .|-.+...
T Consensus 35 ~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~ 114 (534)
T COG4172 35 AGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGK 114 (534)
T ss_pred CCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHH
Confidence 4999999999999999999999999974 37899999987421 12222 22112221
Q ss_pred ccc-----------------HHHHHHHhCCCCCCchh-hhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCccccccc
Q 030541 56 LIS-----------------LEDVMEELGLGPNGGLI-YCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTH 115 (175)
Q Consensus 56 ~~~-----------------~~~~~~~~~l~~~~~~~-~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~ 115 (175)
++. ..++++.+++....... ....++| |+||..++.+++. +|++||.|||+...+.+-
T Consensus 115 Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan--~P~lLIADEPTTALDVtv 192 (534)
T COG4172 115 QLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALAN--EPDLLIADEPTTALDVTV 192 (534)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcC--CCCeEeecCCcchhhhhh
Confidence 111 34566777776543221 1223344 8999999999999 999999999944444444
Q ss_pred chhHHHHHHHHHh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhhhccc
Q 030541 116 VPVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYSFLF 172 (175)
Q Consensus 116 ~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (175)
...+.++|+++++ .|.++ +++|||+..+.+++|++.+|..|..|-+....-.|
T Consensus 193 QaQIL~Ll~~Lq~~~gMa~----lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 193 QAQILDLLKELQAELGMAI----LFITHDLGIVRKFADRVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred HHHHHHHHHHHHHHhCcEE----EEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHh
Confidence 5567779999864 59999 99999999999999999999999999887766554
No 363
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.1e-21 Score=161.26 Aligned_cols=156 Identities=17% Similarity=0.055 Sum_probs=106.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCC--------------ccCCcccccc----HHHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYP--------------VAMDIRELIS----LEDV 62 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~--------------~~~~~~~~~~----~~~~ 62 (175)
+||++.|+|.|||||||+++.++|+++|++|+|.++|.++..++..-+ +..-..+.+. ....
T Consensus 348 rGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~ 427 (546)
T COG4615 348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKW 427 (546)
T ss_pred cCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHH
Confidence 499999999999999999999999999999999999998754322100 0000111111 2334
Q ss_pred HHHhCCCCCCc---hhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH-HHHHHHHHhCCCcEEEE
Q 030541 63 MEELGLGPNGG---LIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL-RNFVDHLKSRNFNVCAV 136 (175)
Q Consensus 63 ~~~~~l~~~~~---~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~-~~~l~~l~~~g~tvli~ 136 (175)
++.+++..... .....-.+| |+.|.++-.++.+ +.|++++||=+...+...+.++ ..++-.++++|+||
T Consensus 428 LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE--eR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI--- 502 (546)
T COG4615 428 LQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE--ERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTI--- 502 (546)
T ss_pred HHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHh--hCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeE---
Confidence 45454433211 111112333 6666666679999 9999999999777666666655 34667788899999
Q ss_pred eeeehhchhhhhcCCcceeEeccchhh
Q 030541 137 YLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 137 ~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+-+|||-. .-..+||++.+.+|..+
T Consensus 503 -~aIsHDd~-YF~~ADrll~~~~G~~~ 527 (546)
T COG4615 503 -FAISHDDH-YFIHADRLLEMRNGQLS 527 (546)
T ss_pred -EEEecCch-hhhhHHHHHHHhcCcee
Confidence 88888744 44677888888877654
No 364
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.85 E-value=1.8e-20 Score=147.54 Aligned_cols=154 Identities=12% Similarity=0.078 Sum_probs=95.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHh----------------ccCccccc--------eEEEeecCcc----c------ccCCC
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLY----------------RHCETVRR--------TMHIVNLDPA----A------ENFDY 47 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~----------------gl~~~~~G--------~I~i~g~~~~----~------~~~~~ 47 (175)
|++++|+||||||||||+++|+ +++.+.+| ++.+++.+.. . +.+++
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~ 102 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGL 102 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEEC
Confidence 6899999999999999999998 44555566 5555553211 0 11222
Q ss_pred CccC-Cccc-ccc---HHHHHHHhCCCCCCc------------------hhhhHHHH--HHHHHHHHHHHhhc--cCCCC
Q 030541 48 PVAM-DIRE-LIS---LEDVMEELGLGPNGG------------------LIYCMEHL--EDNLDDWLAEELDN--YLDDD 100 (175)
Q Consensus 48 ~~~~-~~~~-~~~---~~~~~~~~~l~~~~~------------------~~~~~~~~--~~~~~~~l~~~l~~--~~~p~ 100 (175)
.+.. .... ... ....++.+++..... .......+ .++++..++++++. ..+|+
T Consensus 103 ~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~ 182 (243)
T cd03272 103 KKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAP 182 (243)
T ss_pred CCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCC
Confidence 2100 0000 111 233445555443210 00112223 48899999998852 11689
Q ss_pred EEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccch
Q 030541 101 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 101 lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
++++|||....+......+.+.++++++ +.++ +++||. .++.++||+++.+.-..
T Consensus 183 illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~i----i~~~h~-~~~~~~~d~i~~l~~~~ 237 (243)
T cd03272 183 FYLFDEIDAALDAQYRTAVANMIKELSD-GAQF----ITTTFR-PELLEVADKFYGVKFRN 237 (243)
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHhC-CCEE----EEEecC-HHHHhhCCEEEEEEEEC
Confidence 9999999666666666677778888755 6677 777887 55789999999887544
No 365
>PLN03130 ABC transporter C family member; Provisional
Probab=99.84 E-value=3.1e-21 Score=184.16 Aligned_cols=160 Identities=14% Similarity=0.129 Sum_probs=104.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcccc-ceEEEeecCcccccCCCCccCCcccccc---------HHHHHHHhCCCC
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLGP 70 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~-G~I~i~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~ 70 (175)
+|+.++|+||+|||||||+++|+|.++|++ |+|.+.+.-.--.+..+.+.-++++++. ..++++..++..
T Consensus 642 ~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~ 721 (1622)
T PLN03130 642 VGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQH 721 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHH
Confidence 599999999999999999999999999999 9998765321111112222224444443 233333322211
Q ss_pred ------CC-ch--hhh--HHHHHHHHHHHHHHHhhccCCCCEEEEeCC-CcccccccchhHHHHHHHHHhCCCcEEEEee
Q 030541 71 ------NG-GL--IYC--MEHLEDNLDDWLAEELDNYLDDDYLVFDCP-GQIELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (175)
Q Consensus 71 ------~~-~~--~~~--~~~~~~~~~~~l~~~l~~~~~p~lliLDEP-~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l 138 (175)
.. .. ... .-+.+||||..|||++.. +|++++|||| +..|.....+.+.+.++.+. +++|+ +
T Consensus 722 di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~--~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTv----I 794 (1622)
T PLN03130 722 DLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYS--NSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTR----V 794 (1622)
T ss_pred HHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhC--CCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEE----E
Confidence 00 00 000 123349999999999999 9999999999 22222222223344454432 57999 9
Q ss_pred eehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 139 LDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
++||++..+ ..+|++++++.|..+-+++|
T Consensus 795 lVTH~l~~l-~~aD~Ii~L~~G~i~e~Gt~ 823 (1622)
T PLN03130 795 LVTNQLHFL-SQVDRIILVHEGMIKEEGTY 823 (1622)
T ss_pred EEECCHhHH-HhCCEEEEEeCCEEEEeCCH
Confidence 999999754 67899999999887766554
No 366
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=3e-21 Score=142.96 Aligned_cols=151 Identities=17% Similarity=0.154 Sum_probs=112.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecC---------------cccccCCCCcc-------CCcccccc-
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD---------------PAAENFDYPVA-------MDIRELIS- 58 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~---------------~~~~~~~~~~~-------~~~~~~~~- 58 (175)
|||+++-||+|||||||+|++-|-+.|++|+|.+.... ++.+.++|... ....+...
T Consensus 37 GECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvae 116 (235)
T COG4778 37 GECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAE 116 (235)
T ss_pred ccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHh
Confidence 99999999999999999999999999999999985432 11223333321 01111110
Q ss_pred ---------------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHH
Q 030541 59 ---------------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN 121 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~ 121 (175)
...++..+.++.+. |......+| ++||.-++|++.- |-|+|+||||+...+..+++.+.+
T Consensus 117 Pll~~gv~~~~a~~~a~~Ll~rLnlperL-W~LaPaTFSGGEqQRVNIaRgfiv--d~pILLLDEPTasLDa~Nr~vVve 193 (235)
T COG4778 117 PLLARGVPREVARAKAADLLTRLNLPERL-WSLAPATFSGGEQQRVNIARGFIV--DYPILLLDEPTASLDATNRAVVVE 193 (235)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCCHHH-hcCCCcccCCchheehhhhhhhhc--cCceEEecCCcccccccchHHHHH
Confidence 23455566666554 333334444 8899999999999 999999999988877888999999
Q ss_pred HHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEecc
Q 030541 122 FVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 122 ~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
++.+-+.+|.++ +=+-||-+.=+..+||++-+.+
T Consensus 194 li~e~Ka~GaAl----vGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 194 LIREAKARGAAL----VGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred HHHHHHhcCceE----EEeeccHHHHHHHhhheeeccc
Confidence 999998899998 7888987777778888887765
No 367
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.83 E-value=2.6e-20 Score=169.93 Aligned_cols=160 Identities=19% Similarity=0.146 Sum_probs=112.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccc-------cCCCCc------cCCcccccc-------HH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDYPV------AMDIRELIS-------LE 60 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~-------~~~~~~------~~~~~~~~~-------~~ 60 (175)
+|+.+||+||+||||||.+..|-..+.|++|.|.+||.+++.- +++.+. .-+.++++. ..
T Consensus 1015 ~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~ 1094 (1228)
T KOG0055|consen 1015 AGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEE 1094 (1228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHH
Confidence 4999999999999999999999999999999999999987542 222221 112222221 12
Q ss_pred HHHHHhCCC--------CCCchhh----hHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 61 DVMEELGLG--------PNGGLIY----CMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 61 ~~~~~~~l~--------~~~~~~~----~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
++.+-..+. ....... ....+ .|+||.++|||+.+ +|++|+|||.+...+......+++.|++.
T Consensus 1095 eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR--nPkILLLDEATSALDseSErvVQeALd~a 1172 (1228)
T KOG0055|consen 1095 EIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR--NPKILLLDEATSALDSESERVVQEALDRA 1172 (1228)
T ss_pred HHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc--CCCeeeeeccchhhhhhhHHHHHHHHHHh
Confidence 222211111 0000000 11122 39999999999999 99999999995554455455666777776
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
..|+|. +++.|++..+ +-||.|.++++|.++=+++-
T Consensus 1173 -~~gRT~----IvIAHRLSTI-qnaD~I~Vi~~G~VvE~GtH 1208 (1228)
T KOG0055|consen 1173 -MEGRTT----IVIAHRLSTI-QNADVIAVLKNGKVVEQGTH 1208 (1228)
T ss_pred -hcCCcE----EEEecchhhh-hcCCEEEEEECCEEEecccH
Confidence 458999 9999999987 66799999999998877663
No 368
>PLN03232 ABC transporter C family member; Provisional
Probab=99.82 E-value=2.9e-20 Score=176.97 Aligned_cols=159 Identities=12% Similarity=0.064 Sum_probs=101.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEE-eecC-cccccCCCCccCCcccccc---------HHHHHHHhCCC
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI-VNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLG 69 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i-~g~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~ 69 (175)
+|+.++|+||+|||||||+++|+|.++|++|.+.. .+.- ...|+ .+.+.-+.++++. ..++++..++.
T Consensus 642 ~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~-p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~ 720 (1495)
T PLN03232 642 VGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQV-SWIFNATVRENILFGSDFESERYWRAIDVTALQ 720 (1495)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCc-cccccccHHHHhhcCCccCHHHHHHHHHHhCCH
Confidence 59999999999999999999999999999987643 2210 01111 1222224444332 22333332221
Q ss_pred C------CCc-h--hhh--HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccc-cccchhHHHHHHHHHhCCCcEEEEe
Q 030541 70 P------NGG-L--IYC--MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIEL-FTHVPVLRNFVDHLKSRNFNVCAVY 137 (175)
Q Consensus 70 ~------~~~-~--~~~--~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~-~~~~~~~~~~l~~l~~~g~tvli~~ 137 (175)
. ... . ... .-+.+||||..|||++.+ +|++++||||....+ ....+.+.+.++.. .+++|+
T Consensus 721 ~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~--~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~---- 793 (1495)
T PLN03232 721 HDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYS--NSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTR---- 793 (1495)
T ss_pred HHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEE----
Confidence 1 000 0 000 112349999999999999 999999999922222 22222333444443 357899
Q ss_pred eeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 138 LLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 138 l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
+++||++..+ ..+|++++++.|..+-++++
T Consensus 794 IlvTH~~~~l-~~aD~Ii~L~~G~i~~~Gt~ 823 (1495)
T PLN03232 794 VLVTNQLHFL-PLMDRIILVSEGMIKEEGTF 823 (1495)
T ss_pred EEEECChhhH-HhCCEEEEEeCCEEEEecCH
Confidence 9999999865 66999999999887766654
No 369
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.82 E-value=2.1e-20 Score=144.21 Aligned_cols=151 Identities=14% Similarity=0.085 Sum_probs=94.2
Q ss_pred EEEEECCCCCCHHHHHHHHh----ccCccccceEEEeecC----cccccCCCCccCC---ccccccHHHHHHHhCCCCCC
Q 030541 4 AQLVIGPAGSGKSTYCSSLY----RHCETVRRTMHIVNLD----PAAENFDYPVAMD---IRELISLEDVMEELGLGPNG 72 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~----gl~~~~~G~I~i~g~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~ 72 (175)
+++|+||||||||||+++|. |..+|++|.+..+... .....+.+.+... ........++.+++.+....
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~~~ 103 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFCHQG 103 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeeechH
Confidence 89999999999999999995 9888888766411111 1111111111000 00111112455554333211
Q ss_pred ch----hhhHHHHH--HHHH------HHHHHHhhccCCCCEEEEeCCCcccccccch-hHHHHHHHHHhC-CCcEEEEee
Q 030541 73 GL----IYCMEHLE--DNLD------DWLAEELDNYLDDDYLVFDCPGQIELFTHVP-VLRNFVDHLKSR-NFNVCAVYL 138 (175)
Q Consensus 73 ~~----~~~~~~~~--~~~~------~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~-~~~~~l~~l~~~-g~tvli~~l 138 (175)
.. ......+| ++++ ..+++++.. +|+++++|||....+..... .+.+++++++++ +.|| +
T Consensus 104 ~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~--~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~i----i 177 (204)
T cd03240 104 ESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGS--NCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQL----I 177 (204)
T ss_pred HHHHHHhcCccccCccHHHHHHHHHHHHHHHHhcc--CCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEE----E
Confidence 00 00112222 5553 567788888 99999999996666666666 788889888765 7899 9
Q ss_pred eehhchhhhhcCCcceeEeccch
Q 030541 139 LDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
++||+.+.+ ..+|+++.+....
T Consensus 178 iitH~~~~~-~~~d~i~~l~~~~ 199 (204)
T cd03240 178 VITHDEELV-DAADHIYRVEKDG 199 (204)
T ss_pred EEEecHHHH-hhCCEEEEEeeCC
Confidence 999998876 5799888876543
No 370
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.81 E-value=1.1e-19 Score=144.00 Aligned_cols=151 Identities=13% Similarity=0.059 Sum_probs=96.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCccc-cceEEEeec-Cc---------cc-------ccC---------CCCccCCcc
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNL-DP---------AA-------ENF---------DYPVAMDIR 54 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~-~G~I~i~g~-~~---------~~-------~~~---------~~~~~~~~~ 54 (175)
..+++|+||||||||||+++|++++.+. .|+++..+. +. .. ++. ...+.+++.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 3578999999999999999999998875 356666443 10 00 010 001111111
Q ss_pred c---------c-c--------cHHHHHHHhCCCCCCc--------------------hhhhHHHHHHHHHHHHHHHhhc-
Q 030541 55 E---------L-I--------SLEDVMEELGLGPNGG--------------------LIYCMEHLEDNLDDWLAEELDN- 95 (175)
Q Consensus 55 ~---------~-~--------~~~~~~~~~~l~~~~~--------------------~~~~~~~~~~~~~~~l~~~l~~- 95 (175)
. . + .....++.+++..... .....-+..++++..++++++.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 0 0 0 1345667777752210 1111123348888999998761
Q ss_pred -cCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEec
Q 030541 96 -YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFC 158 (175)
Q Consensus 96 -~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~ 158 (175)
..+|+++++|||+..........+.+.++++. +|.|+ +++||+ .++.+.+|+++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~i----i~iSH~-~~~~~~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQF----IVVSLK-EGMFNNANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEE----EEEECC-HHHHHhCCEEEEEE
Confidence 12789999999966666666677777888874 48889 999999 66667899887655
No 371
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=3.6e-19 Score=129.67 Aligned_cols=147 Identities=14% Similarity=0.090 Sum_probs=98.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccc---cceEEEeecCcc-----cccCC-------CCccCCcccccc-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPA-----AENFD-------YPVAMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~---~G~I~i~g~~~~-----~~~~~-------~~~~~~~~~~~~------- 58 (175)
||||+-|.||+|||||||+.-+.|.+.++ +|++.+++++.. .+.++ ..+.+++.+++.
T Consensus 27 ~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~ 106 (213)
T COG4136 27 KGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATL 106 (213)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCccc
Confidence 69999999999999999999999988753 799999987631 12222 333444444432
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHH-HHHH
Q 030541 59 --------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV-DHLK 127 (175)
Q Consensus 59 --------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l-~~l~ 127 (175)
....++..++...-.. ..+.+| |+.|.++.|++.. .|++++||||-...+..-++.+++.+ .+.+
T Consensus 107 KG~aRr~~a~aAL~~~gL~g~f~~--dP~tlSGGQrARvaL~R~Lla--~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r 182 (213)
T COG4136 107 KGNARRNAANAALERSGLDGAFHQ--DPATLSGGQRARVALLRALLA--QPKALLLDEPFSRLDVALRDQFRQWVFSEVR 182 (213)
T ss_pred ccHHHHhhHHHHHHHhccchhhhc--ChhhcCcchHHHHHHHHHHHh--CcceeeeCCchhHHHHHHHHHHHHHHHHHHH
Confidence 2445666666543211 224444 8888999999999 99999999992221122233344433 4456
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeE
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVC 156 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~ 156 (175)
..|..+ +++||+.+++. --++++-
T Consensus 183 ~agiPt----v~VTHD~~Dvp-agsrVie 206 (213)
T COG4136 183 AAGIPT----VQVTHDLQDVP-AGSRVIE 206 (213)
T ss_pred hcCCCe----EEEecccccCC-CCCeeee
Confidence 678899 99999999987 3345443
No 372
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.80 E-value=7.4e-20 Score=152.59 Aligned_cols=155 Identities=13% Similarity=0.138 Sum_probs=106.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecC--cccccCCCCccCCcccccc------------HHHHHHHh
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD--PAAENFDYPVAMDIRELIS------------LEDVMEEL 66 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~--~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 66 (175)
.||++|++||||-||||+.|+|+|.++|++|+ . .+.. ...|.+.-.+..++.+.+. ..++.+-+
T Consensus 366 ~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~-~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl 443 (591)
T COG1245 366 DGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-E-EDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPL 443 (591)
T ss_pred cceEEEEECCCCcchHHHHHHHhccccCCCCC-C-ccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCcc
Confidence 48999999999999999999999999999997 1 1111 1112222122223333332 12222222
Q ss_pred CCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh-CCCcEEEEeeeehhc
Q 030541 67 GLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQV 143 (175)
Q Consensus 67 ~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~ 143 (175)
.+..-. ..+...+| +.||.+++.++.. ++++++||||+...+...+-...+.++++.+ .++|. +++.|+
T Consensus 444 ~l~~i~--e~~v~~LSGGELQRvaIaa~L~r--eADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta----~vVdHD 515 (591)
T COG1245 444 NLEDLL--ERPVDELSGGELQRVAIAAALSR--EADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTA----LVVDHD 515 (591)
T ss_pred chHHHH--hcccccCCchhHHHHHHHHHhcc--ccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceE----EEEecc
Confidence 222111 11122333 8899999999999 9999999999766666656666778888754 57889 999999
Q ss_pred hhhhhcCCcceeEeccchhhHH
Q 030541 144 CIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+..+...+|++.++.+.+.+..
T Consensus 516 i~~~dyvsDr~ivF~GePg~~g 537 (591)
T COG1245 516 IYMIDYVSDRLIVFEGEPGKHG 537 (591)
T ss_pred eehhhhhhceEEEEecCCCccC
Confidence 9999999999999988776543
No 373
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.80 E-value=4.6e-19 Score=141.26 Aligned_cols=98 Identities=17% Similarity=0.125 Sum_probs=72.6
Q ss_pred HHHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCC---CCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEE
Q 030541 61 DVMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLD---DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (175)
Q Consensus 61 ~~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~---p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~ 136 (175)
+.++.++++.. .......-+..++||..+++++.. + |++++||||+........+.+.+++++++++|.||
T Consensus 151 ~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~--~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tv--- 225 (261)
T cd03271 151 QTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSK--RSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTV--- 225 (261)
T ss_pred HHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhc--CCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE---
Confidence 34455666541 212222223348999999999998 6 79999999966666667778888999988889999
Q ss_pred eeeehhchhhhhcCCcceeEe------ccchhhHH
Q 030541 137 YLLDSQVCIRFRTLPPCIVCF------CCTHTVVQ 165 (175)
Q Consensus 137 ~l~~sH~~~~~~~~~~~~~~~------~~~~~~~~ 165 (175)
+++||+++++. .+|+++.+ ..|..+.+
T Consensus 226 -IiitH~~~~i~-~aD~ii~Lgp~~g~~~G~iv~~ 258 (261)
T cd03271 226 -VVIEHNLDVIK-CADWIIDLGPEGGDGGGQVVAS 258 (261)
T ss_pred -EEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEe
Confidence 99999999885 69999999 56655443
No 374
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.80 E-value=3.9e-19 Score=140.71 Aligned_cols=154 Identities=18% Similarity=0.173 Sum_probs=98.5
Q ss_pred EEEEECCCCCCHHHHHHHHhccCccccceEEEeecC-------c-----ccccC--CCCc-------------------c
Q 030541 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-------P-----AAENF--DYPV-------------------A 50 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-------~-----~~~~~--~~~~-------------------~ 50 (175)
+.+|+||||||||||+++|+++..+..|+++..+.. . ....+ .+.. .
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ 103 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYR 103 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEEE
Confidence 789999999999999999999987766666543210 0 00000 0000 0
Q ss_pred CCccc--cccHHHHHHHhCCCCCCc--------------------hhhhHHHH--HHHHHHHHHHHhhc--cCCCCEEEE
Q 030541 51 MDIRE--LISLEDVMEELGLGPNGG--------------------LIYCMEHL--EDNLDDWLAEELDN--YLDDDYLVF 104 (175)
Q Consensus 51 ~~~~~--~~~~~~~~~~~~l~~~~~--------------------~~~~~~~~--~~~~~~~l~~~l~~--~~~p~lliL 104 (175)
++... .-...++++.+++..... .......+ .++++..++++++. +..|++++|
T Consensus 104 ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lll 183 (247)
T cd03275 104 INGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVL 183 (247)
T ss_pred ECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 00000 001245666666642210 01111233 37888999998875 114899999
Q ss_pred eCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchh
Q 030541 105 DCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHT 162 (175)
Q Consensus 105 DEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~ 162 (175)
|||.........+.+.+++++++++|.++ +++||+.+ +...+|+++++.-.++
T Consensus 184 DEPt~~LD~~~~~~l~~~i~~~~~~g~~v----i~isH~~~-~~~~~d~i~~~~~~~~ 236 (247)
T cd03275 184 DEVDAALDNTNVGKVASYIREQAGPNFQF----IVISLKEE-FFSKADALVGVYRDQE 236 (247)
T ss_pred ecccccCCHHHHHHHHHHHHHhccCCcEE----EEEECCHH-HHhhCCeEEEEEecCC
Confidence 99966666666777888999987778999 99999965 4578999988765544
No 375
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.79 E-value=1.2e-19 Score=140.74 Aligned_cols=75 Identities=17% Similarity=0.103 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhhc--cCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEec
Q 030541 81 LEDNLDDWLAEELDN--YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFC 158 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~--~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~ 158 (175)
..++++..+++++.. ..+|+++++|||....+....+.+++.++++++ +.|+ +++||+ .++.++||+++.++
T Consensus 130 ~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~----iivs~~-~~~~~~~d~v~~~~ 203 (212)
T cd03274 130 GGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQF----IVISLR-NNMFELADRLVGIY 203 (212)
T ss_pred HHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEE----EEEECc-HHHHHhCCEEEEEE
Confidence 347888999997752 115899999999777667777888889999854 5678 788898 57889999999987
Q ss_pred cch
Q 030541 159 CTH 161 (175)
Q Consensus 159 ~~~ 161 (175)
-.+
T Consensus 204 ~~~ 206 (212)
T cd03274 204 KTN 206 (212)
T ss_pred ecC
Confidence 554
No 376
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.79 E-value=1.4e-18 Score=147.87 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=116.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------ccCCCCc----------cCCccccccHH--
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV----------AMDIRELISLE-- 60 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~----------~~~~~~~~~~~-- 60 (175)
+|||+||.|-=|||+|=|+++|.|..++.+|+|.++|++... ..++|.+ .+++.+++...
T Consensus 284 ~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l 363 (500)
T COG1129 284 AGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASL 363 (500)
T ss_pred CCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhh
Confidence 599999999999999999999999999999999999986432 1233333 22333333322
Q ss_pred -------------------HHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 61 -------------------DVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 61 -------------------~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
...+.+..-... ...+...+| -+|+..++|-+.. +|++||||||++..+..+...+
T Consensus 364 ~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s-~~~~v~~LSGGNQQKVvlarwL~~--~p~vLilDEPTRGIDVGAK~eI 440 (500)
T COG1129 364 RRFSRRGLIDRRKERALAERYIRRLRIKTPS-PEQPIGTLSGGNQQKVVLARWLAT--DPKVLILDEPTRGIDVGAKAEI 440 (500)
T ss_pred hhhccccccChHHHHHHHHHHHHhcCcccCC-ccchhhcCCchhhhhHHHHHHHhc--CCCEEEECCCCcCcccchHHHH
Confidence 111111111100 001122333 5688999999999 9999999999887777778888
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
-+++++++++|++| +++|.+++|+...|||+++|+.|..+
T Consensus 441 y~li~~lA~~G~ai----l~iSSElpEll~~~DRIlVm~~Gri~ 480 (500)
T COG1129 441 YRLIRELAAEGKAI----LMISSELPELLGLSDRILVMREGRIV 480 (500)
T ss_pred HHHHHHHHHCCCEE----EEEeCChHHHHhhCCEEEEEECCEEE
Confidence 88999999999999 99999999999999999999988654
No 377
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1e-19 Score=153.34 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=101.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecC--cccc-----cCC---------CC---ccCCcc-ccccHH-
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD--PAAE-----NFD---------YP---VAMDIR-ELISLE- 60 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~--~~~~-----~~~---------~~---~~~~~~-~~~~~~- 60 (175)
|..+||+|+||+|||||||+|+. |.|.....+ .+.. ... +. ..++.. +.-...
T Consensus 106 GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~ 179 (582)
T KOG0062|consen 106 GRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYD 179 (582)
T ss_pred ccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHH
Confidence 78899999999999999999987 334322111 0000 000 00 000011 000111
Q ss_pred HHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEee
Q 030541 61 DVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (175)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l 138 (175)
+++..++|.++.. ..+..++| -+.|.+||||+.. +|++|+||||+...+..+..|+.+.|..+ +.|+ +
T Consensus 180 ~~L~glGFt~emq-~~pt~slSGGWrMrlaLARAlf~--~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~----l 249 (582)
T KOG0062|consen 180 KILAGLGFTPEMQ-LQPTKSLSGGWRMRLALARALFA--KPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITS----L 249 (582)
T ss_pred HHHHhCCCCHHHH-hccccccCcchhhHHHHHHHHhc--CCCEEeecCCcccchhHHHHHHHHHHhhC---CceE----E
Confidence 2555677776542 22334455 6788999999999 99999999997776666666777777665 4799 9
Q ss_pred eehhchhhhhcCCcceeEeccc-hhhHHhhhhcc
Q 030541 139 LDSQVCIRFRTLPPCIVCFCCT-HTVVQRAYSFL 171 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 171 (175)
++||+-......|..|+.+++. -..|.++|+-|
T Consensus 250 iVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 250 IVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred EEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 9999999999999888887764 35566665544
No 378
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.76 E-value=7.5e-19 Score=148.86 Aligned_cols=160 Identities=15% Similarity=0.132 Sum_probs=107.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcc---ccc----CCC--------CccCC-ccccccHHHHHHH
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---AEN----FDY--------PVAMD-IRELISLEDVMEE 65 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~---~~~----~~~--------~~~~~-~~~~~~~~~~~~~ 65 (175)
++.+++|||||||||||+|+++|.+.|..|.|.-.-...- .+. ..+ .+.+. ..+.-....++..
T Consensus 416 ~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgr 495 (614)
T KOG0927|consen 416 DSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGR 495 (614)
T ss_pred ccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHH
Confidence 5789999999999999999999999999999975322110 000 000 01111 1222224667788
Q ss_pred hCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhc
Q 030541 66 LGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQV 143 (175)
Q Consensus 66 ~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~ 143 (175)
+++.... ...+...+| ++.++.+++.+.+ .|.+|+||||+...+....+.+.+.|.+ ...+| +++||+
T Consensus 496 fgLtgd~-q~~p~~~LS~Gqr~rVlFa~l~~k--qP~lLlLDEPtnhLDi~tid~laeaiNe---~~Ggv----v~vSHD 565 (614)
T KOG0927|consen 496 FGLTGDA-QVVPMSQLSDGQRRRVLFARLAVK--QPHLLLLDEPTNHLDIETIDALAEAINE---FPGGV----VLVSHD 565 (614)
T ss_pred hCCCccc-cccchhhcccccchhHHHHHHHhc--CCcEEEecCCCcCCCchhHHHHHHHHhc---cCCce----eeeech
Confidence 8887554 233445555 7778888998888 9999999999555555544455555544 35588 999999
Q ss_pred hhhhhcCCcceeEeccch-hhHHhhhhcc
Q 030541 144 CIRFRTLPPCIVCFCCTH-TVVQRAYSFL 171 (175)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 171 (175)
+..+...++.++.+..+. ....++|..|
T Consensus 566 frlI~qVaeEi~~c~~~~~~~~~G~i~~y 594 (614)
T KOG0927|consen 566 FRLISQVAEEIWVCENGTVTKWDGDIEIY 594 (614)
T ss_pred hhHHHHHHHHhHhhccCceeecCccHHHH
Confidence 999999998777665543 3445554444
No 379
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.74 E-value=6.7e-18 Score=142.20 Aligned_cols=153 Identities=13% Similarity=0.077 Sum_probs=102.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCccCC------cccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMD------IRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~------~~~~~~--------- 58 (175)
.|++++++||+||||||++|++..++..++|.|.+||+|++. ..++.+|.-+ ...++.
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~Asne 642 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNE 642 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChH
Confidence 489999999999999999999999999999999999999743 3445444211 111111
Q ss_pred ----H---HHHHHH-hCCCCCCchhhh--H--HHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH
Q 030541 59 ----L---EDVMEE-LGLGPNGGLIYC--M--EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ----~---~~~~~~-~~l~~~~~~~~~--~--~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
. ..+-+. +.++..-..+.. . -+..++||.++||.+.+ +|.+++|||.+...+.+....++..+.++
T Consensus 643 evyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK--~P~iIlLDEATSALDT~tER~IQaaL~rl 720 (790)
T KOG0056|consen 643 EVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILK--APSIILLDEATSALDTNTERAIQAALARL 720 (790)
T ss_pred HHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhc--CCcEEEEcchhhhcCCccHHHHHHHHHHH
Confidence 0 111222 223221111111 0 12238999999999999 99999999995555555555666678887
Q ss_pred HhCCCcEEEEeeeehhchhhhhcCCcceeEeccch
Q 030541 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
+. +.|. +++.|++..+- -+|.+.+++.|.
T Consensus 721 ca-~RTt----IVvAHRLSTiv-nAD~ILvi~~G~ 749 (790)
T KOG0056|consen 721 CA-NRTT----IVVAHRLSTIV-NADLILVISNGR 749 (790)
T ss_pred hc-CCce----EEEeeeehhee-cccEEEEEeCCe
Confidence 65 5677 67788887663 457667666554
No 380
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.74 E-value=4.9e-18 Score=130.54 Aligned_cols=129 Identities=14% Similarity=0.103 Sum_probs=77.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHHHH
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (175)
|++++|+||||||||||+|+|+|...- ...|.++.... +.+ +....+...++.+++.++... . ..+.
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l-----~~~G~~v~a~~--~~~--q~~~l~~~~~~~d~l~~~~s~---~-~~e~ 91 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVIL-----AQAGAPVCASS--FEL--PPVKIFTSIRVSDDLRDGISY---F-YAEL 91 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHH-----HHcCCEEecCc--cCc--ccceEEEeccchhccccccCh---H-HHHH
Confidence 789999999999999999999986531 12233222211 222 223344445555655443321 1 1111
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccch-hHHHHHHHHHhCCCcEEEEeeeehhchhhhhcC
Q 030541 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVP-VLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTL 150 (175)
Q Consensus 82 ~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~-~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~ 150 (175)
++.+..+.+.-.. +|+++++|||.......... ....+++.+++.+.|+ +++||+++.+...
T Consensus 92 -~~~~~iL~~~~~~--~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~ti----iivTH~~~~~~~~ 154 (199)
T cd03283 92 -RRLKEIVEKAKKG--EPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIG----IISTHDLELADLL 154 (199)
T ss_pred -HHHHHHHHhccCC--CCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEE----EEEcCcHHHHHhh
Confidence 2333333332223 89999999994443333333 3345677777778899 9999999988665
No 381
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.73 E-value=1.8e-17 Score=154.02 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=106.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCC------------CccCCccccccHHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------------PVAMDIRELISLED 61 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~------------~~~~~~~~~~~~~~ 61 (175)
.||-+||+|+.|||||||..++..+..|.+|+|.|||.|+.. ...+. ...+++.+.+...+
T Consensus 1165 p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~ 1244 (1381)
T KOG0054|consen 1165 PGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDE 1244 (1381)
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHH
Confidence 389999999999999999999999999999999999988643 11111 12234444444333
Q ss_pred HHH---HhCC---------CCCCchhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH
Q 030541 62 VME---ELGL---------GPNGGLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 62 ~~~---~~~l---------~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
+.+ ...+ +.+.......+ +.+|||-..|+|++.+ ++++++|||.++..+...-..+++.|++-
T Consensus 1245 IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr--~skILvLDEATAsVD~~TD~lIQ~tIR~~- 1321 (1381)
T KOG0054|consen 1245 IWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR--KSKILVLDEATASVDPETDALIQKTIREE- 1321 (1381)
T ss_pred HHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc--cCCEEEEecccccCChHHHHHHHHHHHHH-
Confidence 322 2211 11110011112 3348888899999999 99999999995544444333445555542
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
-+++|| +-+-|++..+.+. |++.+|+.|.++
T Consensus 1322 F~dcTV----ltIAHRl~TVmd~-DrVlVld~G~v~ 1352 (1381)
T KOG0054|consen 1322 FKDCTV----LTIAHRLNTVMDS-DRVLVLDAGRVV 1352 (1381)
T ss_pred hcCCeE----EEEeeccchhhhc-CeEEEeeCCeEe
Confidence 247999 9999999999876 999999998765
No 382
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.73 E-value=9.9e-18 Score=155.81 Aligned_cols=161 Identities=19% Similarity=0.183 Sum_probs=116.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCCccCCcccccc---------HHHHHHHhCCCCC
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLGPN 71 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~ 71 (175)
+|+.+|++|+-|||||+|+.+|.|..+..+|++.++|.-.--.+..|...-++++++- ..++++.-.+.++
T Consensus 546 ~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~D 625 (1381)
T KOG0054|consen 546 KGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKD 625 (1381)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhH
Confidence 4999999999999999999999999999999999998632222223333335555543 3444443333221
Q ss_pred C------ch---hhhH--HHHHHHHHHHHHHHhhccCCCCEEEEeCC-CcccccccchhHHHHHHHHHhCCCcEEEEeee
Q 030541 72 G------GL---IYCM--EHLEDNLDDWLAEELDNYLDDDYLVFDCP-GQIELFTHVPVLRNFVDHLKSRNFNVCAVYLL 139 (175)
Q Consensus 72 ~------~~---~~~~--~~~~~~~~~~l~~~l~~~~~p~lliLDEP-~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~ 139 (175)
. .. ..+. -+.+||||..||||+.+ ++++++||.| +..|.-.+.+.+.+.++.+ -+++|+ ++
T Consensus 626 le~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~--~adIYLLDDplSAVDahvg~~if~~ci~~~-L~~KT~----IL 698 (1381)
T KOG0054|consen 626 LEILPFGDLTEIGERGINLSGGQKQRISLARAVYQ--DADIYLLDDPLSAVDAHVGKHIFEECIRGL-LRGKTV----IL 698 (1381)
T ss_pred HhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhc--cCCEEEEcCcchhhhHhhhHHHHHHHHHhh-hcCCEE----EE
Confidence 1 00 0011 12349999999999999 9999999999 5555555666667777544 357899 99
Q ss_pred ehhchhhhhcCCcceeEeccchhhHHhhhh
Q 030541 140 DSQVCIRFRTLPPCIVCFCCTHTVVQRAYS 169 (175)
Q Consensus 140 ~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (175)
+||.++ ....+|.+++|+.|..+-+++|.
T Consensus 699 VTHql~-~L~~ad~Iivl~~G~I~~~Gty~ 727 (1381)
T KOG0054|consen 699 VTHQLQ-FLPHADQIIVLKDGKIVESGTYE 727 (1381)
T ss_pred EeCchh-hhhhCCEEEEecCCeEecccCHH
Confidence 999765 55888999999999999988885
No 383
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.73 E-value=5.8e-17 Score=124.46 Aligned_cols=72 Identities=6% Similarity=-0.052 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHh----hccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC--C-CcEEEEeeeehhchhhhhcCCcc
Q 030541 81 LEDNLDDWLAEEL----DNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR--N-FNVCAVYLLDSQVCIRFRTLPPC 153 (175)
Q Consensus 81 ~~~~~~~~l~~~l----~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~--g-~tvli~~l~~sH~~~~~~~~~~~ 153 (175)
..++++..+++++ +. +|++++||||...........+.+++.++.++ + .|| +++||+++++.++ |+
T Consensus 112 ~G~k~r~~ia~al~~~~~~--~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~i----ii~th~~~~i~~~-d~ 184 (198)
T cd03276 112 GGERSFSTVCLLLSLWEVM--ESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFI----FITPQDISGLASS-DD 184 (198)
T ss_pred hhHHHHHHHHHHHHHhccc--CCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEE----EEECCcccccccc-cc
Confidence 3478888888887 46 99999999996665566666777788776443 3 477 8999999999887 99
Q ss_pred eeEecc
Q 030541 154 IVCFCC 159 (175)
Q Consensus 154 ~~~~~~ 159 (175)
+.+|.-
T Consensus 185 v~~~~~ 190 (198)
T cd03276 185 VKVFRM 190 (198)
T ss_pred eeEEEe
Confidence 888865
No 384
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.72 E-value=1.2e-17 Score=139.48 Aligned_cols=154 Identities=19% Similarity=0.163 Sum_probs=107.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc--------------------ccC---------CCCccC
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------------ENF---------DYPVAM 51 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------------------~~~---------~~~~~~ 51 (175)
.|.++||+|+||-||||-+|+|+|.++|.=|+-. +.+-.. .+. .+.|..
T Consensus 99 ~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~--~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 99 PGKVVGILGPNGIGKSTALKILAGELKPNLGRYE--DPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCcEEEEEcCCCccHHHHHHHHhCccccCCCCCC--CCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 4899999999999999999999999999876542 111000 000 000100
Q ss_pred ---Ccccccc-------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH
Q 030541 52 ---DIRELIS-------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 52 ---~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
++.+.+. ..++.+.+++..-.. .....+| +.||.+++.++.+ +++++++|||+.-.+...+-..
T Consensus 177 ~KG~v~elLk~~de~g~~devve~l~L~nvl~--r~v~~LSGGELQr~aIaa~l~r--dADvY~FDEpsSyLDi~qRl~~ 252 (591)
T COG1245 177 VKGKVGELLKKVDERGKFDEVVERLGLENVLD--RDVSELSGGELQRVAIAAALLR--DADVYFFDEPSSYLDIRQRLNA 252 (591)
T ss_pred hcchHHHHHHhhhhcCcHHHHHHHhcchhhhh--hhhhhcCchHHHHHHHHHHHhc--cCCEEEEcCCcccccHHHHHHH
Confidence 1112211 356667676654332 2334444 8899999999999 9999999999555555545556
Q ss_pred HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhH
Q 030541 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
..+++++.+.+++| +++.|++.....++|.+-++.+.+.+|
T Consensus 253 ar~Irel~~~~k~V----iVVEHDLavLD~lsD~vhI~YG~pg~Y 293 (591)
T COG1245 253 ARVIRELAEDGKYV----IVVEHDLAVLDYLSDFVHILYGEPGVY 293 (591)
T ss_pred HHHHHHHhccCCeE----EEEechHHHHHHhhheeEEEecCCccc
Confidence 67899998878999 999999999988888777777665554
No 385
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.72 E-value=2.3e-17 Score=126.69 Aligned_cols=135 Identities=11% Similarity=0.006 Sum_probs=82.1
Q ss_pred C-eEEEEECCCCCCHHHHHHHHh--------ccCccccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCC
Q 030541 2 G-YAQLVIGPAGSGKSTYCSSLY--------RHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNG 72 (175)
Q Consensus 2 G-ei~~liG~NGsGKSTLlk~i~--------gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 72 (175)
| ++++|.||||||||||+|.|+ |...|....+. ..+.. +....+... +.+.
T Consensus 27 ~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~----------~~~~~--~~~~~lg~~---~~l~----- 86 (200)
T cd03280 27 NKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSS----------LPVFE--NIFADIGDE---QSIE----- 86 (200)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccccc----------CcCcc--EEEEecCch---hhhh-----
Confidence 5 489999999999999999998 54444322111 11111 111111110 0000
Q ss_pred chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH-HHHHHHHHhCCCcEEEEeeeehhchhhhhcCC
Q 030541 73 GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL-RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLP 151 (175)
Q Consensus 73 ~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~-~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~ 151 (175)
......+..++++..+.+. .. +|+++++|||...........+ ..+++++++++.++ +++||+ .++..++
T Consensus 87 -~~~s~fs~g~~~~~~i~~~-~~--~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~v----i~~tH~-~~l~~~~ 157 (200)
T cd03280 87 -QSLSTFSSHMKNIARILQH-AD--PDSLVLLDELGSGTDPVEGAALAIAILEELLERGALV----IATTHY-GELKAYA 157 (200)
T ss_pred -cCcchHHHHHHHHHHHHHh-CC--CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEE----EEECCH-HHHHHHH
Confidence 0001112234454455544 35 9999999999555445444445 35677777778899 999998 5677899
Q ss_pred cceeEeccchhhHH
Q 030541 152 PCIVCFCCTHTVVQ 165 (175)
Q Consensus 152 ~~~~~~~~~~~~~~ 165 (175)
+++..+..+..+..
T Consensus 158 d~~~~l~~g~l~~~ 171 (200)
T cd03280 158 YKREGVENASMEFD 171 (200)
T ss_pred hcCCCeEEEEEEEe
Confidence 99888887766544
No 386
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.72 E-value=1.7e-17 Score=140.69 Aligned_cols=163 Identities=15% Similarity=0.193 Sum_probs=105.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCccccceEEEe----ecCccccc-CCCC--cc-------------C--C--cc---
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV----NLDPAAEN-FDYP--VA-------------M--D--IR--- 54 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~----g~~~~~~~-~~~~--~~-------------~--~--~~--- 54 (175)
|+.+||+|+|||||||++++|+|-..|..=.+-+. +..+.... +... +. + + ..
T Consensus 101 g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~ 180 (614)
T KOG0927|consen 101 GRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKD 180 (614)
T ss_pred CceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhh
Confidence 89999999999999999999999888755444331 11111100 0000 00 0 0 00
Q ss_pred --------------cccc--HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccc
Q 030541 55 --------------ELIS--LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHV 116 (175)
Q Consensus 55 --------------~~~~--~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~ 116 (175)
+.+. ...++..+++..... ......+| ++.|.+|+|++.. +|++|+||||+...+..+.
T Consensus 181 ~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~-~k~~~~~SgGwrmR~aLAr~Lf~--kP~LLLLDEPtnhLDleA~ 257 (614)
T KOG0927|consen 181 ELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQ-DKKVKDLSGGWRMRAALARALFQ--KPDLLLLDEPTNHLDLEAI 257 (614)
T ss_pred HHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHH-HHHhhccCchHHHHHHHHHHHhc--CCCEEEecCCccCCCHHHH
Confidence 0000 112222233332221 11122233 6788999999999 9999999999666666656
Q ss_pred hhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccch-hhHHhhhhcccc
Q 030541 117 PVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH-TVVQRAYSFLFH 173 (175)
Q Consensus 117 ~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 173 (175)
.++.+.|.++.. + ++ ++++|.-+.+-.+|.+|+.+.... .+|+++|.-|-.
T Consensus 258 ~wLee~L~k~d~-~-~l----Vi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~~ 309 (614)
T KOG0927|consen 258 VWLEEYLAKYDR-I-IL----VIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVK 309 (614)
T ss_pred HHHHHHHHhccC-c-eE----EEEecchhhhhhHhhhhheecccceeeecCCHHHHhh
Confidence 667777766422 2 67 899999999999999999999999 888888876643
No 387
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.71 E-value=5.8e-17 Score=129.76 Aligned_cols=127 Identities=13% Similarity=0.127 Sum_probs=79.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccc----cC----CCCccCCccccccHHHHHHHhCCCCCCch
Q 030541 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE----NF----DYPVAMDIRELISLEDVMEELGLGPNGGL 74 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 74 (175)
.-++|+||||||||||+++|+|+++|++|++.++|+++... .+ .+.+. ..++.....
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q---------------~~~~~r~~v 176 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQ---------------HDVGIRTDV 176 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccc---------------ccccccccc
Confidence 35799999999999999999999999999999999876421 11 11110 011110000
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhc--hhhh-----
Q 030541 75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQV--CIRF----- 147 (175)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~--~~~~----- 147 (175)
. +. ..+........... +|+++++|||...+. +..+++.+ ++|.++ +++||+ ++++
T Consensus 177 ~---~~-~~k~~~~~~~i~~~--~P~villDE~~~~e~------~~~l~~~~-~~G~~v----I~ttH~~~~~~~~~r~~ 239 (270)
T TIGR02858 177 L---DG-CPKAEGMMMLIRSM--SPDVIVVDEIGREED------VEALLEAL-HAGVSI----IATAHGRDVEDLYKRPV 239 (270)
T ss_pred c---cc-chHHHHHHHHHHhC--CCCEEEEeCCCcHHH------HHHHHHHH-hCCCEE----EEEechhHHHHHHhChH
Confidence 0 00 01111222223335 999999999944332 22355555 468999 999995 4335
Q ss_pred ------hcCCcceeEeccch
Q 030541 148 ------RTLPPCIVCFCCTH 161 (175)
Q Consensus 148 ------~~~~~~~~~~~~~~ 161 (175)
..+++++++|+.+.
T Consensus 240 ~~~l~~~~~~~r~i~L~~~~ 259 (270)
T TIGR02858 240 FKELIENEAFERYVVLSRRK 259 (270)
T ss_pred HHHHHhcCceEEEEEEecCC
Confidence 36789999998764
No 388
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=5.7e-17 Score=134.29 Aligned_cols=151 Identities=13% Similarity=0.101 Sum_probs=103.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccc-------ccCCCCccCCccccccHHHHHHHhCCC-----
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLG----- 69 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~----- 69 (175)
|+.++++||+|+||||+++.+...+.+++|.|.++|++++. +.++..|.-++. ...+...+.+.+
T Consensus 289 g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvL---FNDti~yni~ygr~~at 365 (497)
T COG5265 289 GKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVL---FNDTIAYNIKYGRPDAT 365 (497)
T ss_pred ccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCccccee---hhhhHHHHHhccCcccc
Confidence 89999999999999999999999999999999999998643 223434321111 011111111111
Q ss_pred --------------------CCCc-hhhh----HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHH
Q 030541 70 --------------------PNGG-LIYC----MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 70 --------------------~~~~-~~~~----~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
+... .... .-+..+|||.+++|.+.+ +|++++|||.+...+.+..+.++.-|+
T Consensus 366 ~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk--~p~il~~deatsaldt~te~~iq~~l~ 443 (497)
T COG5265 366 AEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK--NPPILILDEATSALDTHTEQAIQAALR 443 (497)
T ss_pred HHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc--CCCEEEEehhhhHhhhhHHHHHHHHHH
Confidence 1100 0000 012238999999999999 999999999944444444445666777
Q ss_pred HHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 125 HLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 125 ~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+.. .|.|. +++-|++..+.+ +|.+++++.|..+
T Consensus 444 ~~~-~~rtt----lviahrlsti~~-adeiivl~~g~i~ 476 (497)
T COG5265 444 EVS-AGRTT----LVIAHRLSTIID-ADEIIVLDNGRIV 476 (497)
T ss_pred HHh-CCCeE----EEEeehhhhccC-CceEEEeeCCEEE
Confidence 764 58899 899999988755 5888888887654
No 389
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=99.69 E-value=1.6e-16 Score=122.73 Aligned_cols=159 Identities=49% Similarity=0.876 Sum_probs=135.5
Q ss_pred EEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHHHHHHH
Q 030541 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDN 84 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 84 (175)
..+|||+||||||.+.-+..++....-.+.+-+.||......|.+..++.+.+...++++..+++++.......+.+...
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~~ 84 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEAN 84 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHhh
Confidence 57899999999999999888887665557777889999999999999999999999999999999999888878888777
Q ss_pred HHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhH
Q 030541 85 LDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 85 ~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
. .|+...+.. ..-.++++|.|+|.+++.+-+.++++++.+.+.+.....+.++++|...+-.++++ .++-+..++.
T Consensus 85 i-dwl~~~l~~-~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl 160 (290)
T KOG1533|consen 85 I-DWLLEKLKP-LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATML 160 (290)
T ss_pred h-HHHHHHhhh-ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHH
Confidence 7 565554443 25679999999999999999999999999988899999999999999999999988 5555666666
Q ss_pred Hhh
Q 030541 165 QRA 167 (175)
Q Consensus 165 ~~~ 167 (175)
+++
T Consensus 161 ~me 163 (290)
T KOG1533|consen 161 HME 163 (290)
T ss_pred hhc
Confidence 654
No 390
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.67 E-value=6.5e-17 Score=124.36 Aligned_cols=142 Identities=16% Similarity=0.096 Sum_probs=76.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhcc-CccccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl-~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+|++++|+||||||||||+|+|++. +.+..|.... .......+.. +....+... +.+. . ...
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~----~~~~~i~~~d--qi~~~~~~~---d~i~--~------~~s 90 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP----AESASIPLVD--RIFTRIGAE---DSIS--D------GRS 90 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc----ccccccCCcC--EEEEEecCc---cccc--C------Cce
Confidence 3789999999999999999999954 3333443211 0111122211 111111110 0000 0 001
Q ss_pred HHH-HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH-HHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEe
Q 030541 80 HLE-DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL-RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 80 ~~~-~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~-~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
.++ +.++......... +|+++++|||...........+ +.+++.+++.+.++ +++||+.+.+ ..++.+..+
T Consensus 91 ~~~~e~~~l~~i~~~~~--~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~v----i~~tH~~~~~-~~~~~~~~l 163 (202)
T cd03243 91 TFMAELLELKEILSLAT--PRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRT----LFATHFHELA-DLPEQVPGV 163 (202)
T ss_pred eHHHHHHHHHHHHHhcc--CCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeE----EEECChHHHH-HHhhcCCCe
Confidence 122 2232333334455 9999999999444333333333 44567777778899 9999997655 466655555
Q ss_pred ccchhhHHh
Q 030541 158 CCTHTVVQR 166 (175)
Q Consensus 158 ~~~~~~~~~ 166 (175)
...+...+.
T Consensus 164 ~~~~~~~~~ 172 (202)
T cd03243 164 KNLHMEELI 172 (202)
T ss_pred EEEEEEEEe
Confidence 554444433
No 391
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.64 E-value=9.3e-16 Score=115.96 Aligned_cols=78 Identities=9% Similarity=-0.032 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhhc--cCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEe
Q 030541 80 HLEDNLDDWLAEELDN--YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~--~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
+..++++..+++++.. +.+|+++++|||.........+.+.+.+.++.++|.|+ +++||+.+.+ ..+|+++.+
T Consensus 96 S~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~ti----IiiSH~~~~~-~~adrvi~i 170 (178)
T cd03239 96 SGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQF----IVITLKKEMF-ENADKLIGV 170 (178)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE----EEEECCHHHH-hhCCeEEEE
Confidence 3457888899997752 23999999999966666666777778888887667899 9999998776 579999888
Q ss_pred ccchh
Q 030541 158 CCTHT 162 (175)
Q Consensus 158 ~~~~~ 162 (175)
+..+.
T Consensus 171 ~~~~~ 175 (178)
T cd03239 171 LFVHG 175 (178)
T ss_pred EEeCC
Confidence 76443
No 392
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.64 E-value=6.8e-17 Score=148.23 Aligned_cols=159 Identities=17% Similarity=0.141 Sum_probs=103.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc--cccceEEEeecCccc----ccCCCCc-------cCCcccccc---------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDPAA----ENFDYPV-------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~--~~~G~I~i~g~~~~~----~~~~~~~-------~~~~~~~~~--------- 58 (175)
+|-..||+|+|||||||||++|+|=.. ..+|+|.++|.+..+ +..+|+. .+++++.+.
T Consensus 816 PG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~ 895 (1391)
T KOG0065|consen 816 PGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPK 895 (1391)
T ss_pred CCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCC
Confidence 478899999999999999999999743 568999999987542 2233332 234444332
Q ss_pred ----------HHHHHHHhCCCCCCchhhh--H--HHHHHHHHHHHHHHhhccCCC-CEEEEeCCCcccccccchhHHHHH
Q 030541 59 ----------LEDVMEELGLGPNGGLIYC--M--EHLEDNLDDWLAEELDNYLDD-DYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 59 ----------~~~~~~~~~l~~~~~~~~~--~--~~~~~~~~~~l~~~l~~~~~p-~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
.++|++.+++......... . -+.+||.|..++-.|.. +| .+|+||||+...+......+.+++
T Consensus 896 ~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA--~P~~ilFLDEPTSGLDsqaA~~i~~~l 973 (1391)
T KOG0065|consen 896 EVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVA--NPSSILFLDEPTSGLDSQAAAIVMRFL 973 (1391)
T ss_pred cCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEec--CCceeEEecCCCCCccHHHHHHHHHHH
Confidence 2455555555422111110 0 12234555555556666 99 899999996666666666788899
Q ss_pred HHHHhCCCcEEEEeeeehhchh-hhhcCCcceeEecc-chhhHH
Q 030541 124 DHLKSRNFNVCAVYLLDSQVCI-RFRTLPPCIVCFCC-THTVVQ 165 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~-~~~~~~~~~~~~~~-~~~~~~ 165 (175)
++++..|.|| +-+-|+.. ++-+..|++++|.. |.+||-
T Consensus 974 rkla~tGqtI----lCTIHQPS~~ife~FD~LLLLkrGGqtVY~ 1013 (1391)
T KOG0065|consen 974 RKLADTGQTI----LCTIHQPSIDIFEAFDELLLLKRGGQTVYF 1013 (1391)
T ss_pred HHHHhcCCeE----EEEecCCcHHHHHHHhHHHHHhcCCeEEEe
Confidence 9999999999 66667654 34445577777653 444443
No 393
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.64 E-value=1.6e-15 Score=144.39 Aligned_cols=72 Identities=14% Similarity=0.040 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhh---ccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeE
Q 030541 80 HLEDNLDDWLAEELD---NYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVC 156 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~---~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~ 156 (175)
+..++||..+++++. . +|+++|||||+........+.+.+++++++++|.|| +++||+++++ +.+|+++.
T Consensus 811 SGGE~QRV~LAraL~~~~~--~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TV----IiIsHdl~~i-~~aDrVi~ 883 (1809)
T PRK00635 811 SGGEIQRLKLAYELLAPSK--KPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTV----VIIEHNMHVV-KVADYVLE 883 (1809)
T ss_pred CHHHHHHHHHHHHHhhcCC--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE----EEEeCCHHHH-HhCCEEEE
Confidence 334889999999986 5 999999999977766777778888999998889999 9999999998 89999999
Q ss_pred ec
Q 030541 157 FC 158 (175)
Q Consensus 157 ~~ 158 (175)
|.
T Consensus 884 L~ 885 (1809)
T PRK00635 884 LG 885 (1809)
T ss_pred Ec
Confidence 95
No 394
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=2.1e-15 Score=137.51 Aligned_cols=81 Identities=15% Similarity=0.091 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhhc-cCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEe-
Q 030541 80 HLEDNLDDWLAEELDN-YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCF- 157 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~-~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~- 157 (175)
+..++||..+++++.. ..+|++++||||+..........+.+++++++++|.|| ++++|+++.+. .+|+++.|
T Consensus 830 SgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TV----Ivi~H~~~~i~-~aD~ii~Lg 904 (924)
T TIGR00630 830 SGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTV----VVIEHNLDVIK-TADYIIDLG 904 (924)
T ss_pred CHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE----EEEeCCHHHHH-hCCEEEEec
Confidence 3348899999999885 11489999999966666777778888999998889999 99999999884 69999999
Q ss_pred -----ccchhhHH
Q 030541 158 -----CCTHTVVQ 165 (175)
Q Consensus 158 -----~~~~~~~~ 165 (175)
..|..+.+
T Consensus 905 p~~G~~gG~iv~~ 917 (924)
T TIGR00630 905 PEGGDGGGTIVAS 917 (924)
T ss_pred CCccCCCCEEEEe
Confidence 45555543
No 395
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.63 E-value=1.7e-15 Score=112.69 Aligned_cols=133 Identities=12% Similarity=-0.000 Sum_probs=85.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCC-CccCCccccccHHHHHHHhCCCCCCchhhhHHHH
Q 030541 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (175)
.+.+|+|||||||||+++++....-...|.+.... .. ..+. .+ ...-.+ +..... -+.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~---~~g~~~~--~~~~~~----i~~~~~-----------lS~ 80 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV---KAGCIVA--AVSAEL----IFTRLQ-----------LSG 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc---cCCCcce--eeEEEE----ehheee-----------ccc
Confidence 48999999999999999998877666555544311 10 1111 11 000000 000000 111
Q ss_pred HHHHHHHHHHHhhcc--CCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEecc
Q 030541 82 EDNLDDWLAEELDNY--LDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 82 ~~~~~~~l~~~l~~~--~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
.++++..+++++... .+|+++++|||...........+...+.++.+++.++ +++||+.+... .+|+++.+..
T Consensus 81 G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~v----ii~TH~~~~~~-~~d~~~~l~~ 155 (162)
T cd03227 81 GEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV----IVITHLPELAE-LADKLIHIKK 155 (162)
T ss_pred cHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE----EEEcCCHHHHH-hhhhEEEEEE
Confidence 266667778877642 2789999999966655555566666777765557889 99999999875 5899988877
Q ss_pred ch
Q 030541 160 TH 161 (175)
Q Consensus 160 ~~ 161 (175)
.+
T Consensus 156 ~~ 157 (162)
T cd03227 156 VI 157 (162)
T ss_pred Ee
Confidence 65
No 396
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=99.63 E-value=4.3e-15 Score=113.33 Aligned_cols=149 Identities=68% Similarity=1.243 Sum_probs=129.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHHHH
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (175)
|--..+.||.||||||.++.+........-+..+-+.+|......|.+..+.++.+....++|.+.++++.......+.+
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl 82 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYL 82 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHHH
Confidence 44567899999999999999999988877789999999998888999888999999999999999999998877777777
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCc
Q 030541 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPP 152 (175)
Q Consensus 82 ~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~ 152 (175)
-+.. .|+...+-. .+-+++++|.|++.+++.+...+.++++.+++-+.-+..++++.|+.+-+..+|++
T Consensus 83 ~~Nl-dwL~~~~Gd-~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiS 151 (273)
T KOG1534|consen 83 LENL-DWLEEEIGD-VEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFIS 151 (273)
T ss_pred HHHH-HHHHhhccC-ccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHH
Confidence 6766 565654443 37899999999999999999999999999977677777888999999999999886
No 397
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.63 E-value=2.5e-16 Score=120.66 Aligned_cols=158 Identities=19% Similarity=0.209 Sum_probs=95.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc----ccceEEEeecCc-----cc------ccCCCCcc--C---Ccc------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDP-----AA------ENFDYPVA--M---DIR------ 54 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~----~~G~I~i~g~~~-----~~------~~~~~~~~--~---~~~------ 54 (175)
|||+-|++|++|||||-..|+|+|..+. +.-..++++.+. ++ ++++..+. . ++.
T Consensus 32 EGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~Q 111 (330)
T COG4170 32 EGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQ 111 (330)
T ss_pred cceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHH
Confidence 6999999999999999999999999873 233444554432 11 12222210 0 000
Q ss_pred --cccc------------------HHHHHHHhCCCCCCchhh-hHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCccc
Q 030541 55 --ELIS------------------LEDVMEELGLGPNGGLIY-CMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIE 111 (175)
Q Consensus 55 --~~~~------------------~~~~~~~~~l~~~~~~~~-~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~ 111 (175)
++++ .-+++..+++-.....+. ..+++ .+.|++.++.+++. .|.+||.|||+...
T Consensus 112 lIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~An--qPrLLIADEPTN~~ 189 (330)
T COG4170 112 LIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALAN--QPRLLIADEPTNSM 189 (330)
T ss_pred HHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhcc--CCceEeccCCCccc
Confidence 0000 112222333322111110 01111 14567788888888 99999999992221
Q ss_pred ccccchhHHHHHHHHHh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhH
Q 030541 112 LFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 112 ~~~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
.-.....+..++..+++ +|.|| +++||++..+.+.||++.++.||.++-
T Consensus 190 e~~Tq~QifRLLs~mNQn~~TtI----LL~s~Dl~~is~W~d~i~VlYCGQ~~E 239 (330)
T COG4170 190 EPTTQAQIFRLLSRLNQNSNTTI----LLISHDLQMISQWADKINVLYCGQTVE 239 (330)
T ss_pred CccHHHHHHHHHHHhhccCCceE----EEEcccHHHHHHHhhheEEEEeccccc
Confidence 11112223337777754 58888 999999999999999999999997764
No 398
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.62 E-value=2.6e-15 Score=116.58 Aligned_cols=73 Identities=8% Similarity=-0.092 Sum_probs=52.8
Q ss_pred HHHHHHHHHH----hhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhC-C-CcEEEEeeeehhchhhhhcCCc--ce
Q 030541 83 DNLDDWLAEE----LDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-N-FNVCAVYLLDSQVCIRFRTLPP--CI 154 (175)
Q Consensus 83 ~~~~~~l~~~----l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g-~tvli~~l~~sH~~~~~~~~~~--~~ 154 (175)
++++..++.. ++. +|+++++|||...........+.+.+.+++++ | .|+ +++||++.+...+++ ++
T Consensus 131 ~~q~~~i~~~la~~~~~--~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~v----iiith~~~~~~~~~~~~~v 204 (213)
T cd03277 131 ERSVSTMLYLLSLQELT--RCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQY----FLITPKLLPGLNYHEKMTV 204 (213)
T ss_pred HHHHHHHHHHHHHHhcc--CCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceE----EEEchhhccCCcccCceEE
Confidence 5555444433 245 99999999996666666677788888888665 5 578 999999988888887 55
Q ss_pred eEeccch
Q 030541 155 VCFCCTH 161 (175)
Q Consensus 155 ~~~~~~~ 161 (175)
.++..|+
T Consensus 205 ~~l~~g~ 211 (213)
T cd03277 205 LCVYNGP 211 (213)
T ss_pred EEEecCc
Confidence 5555443
No 399
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.62 E-value=4.2e-15 Score=135.75 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhhccCCC---CEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeE
Q 030541 80 HLEDNLDDWLAEELDNYLDD---DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVC 156 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p---~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~ 156 (175)
+..++|+..+++++.. +| +++|||||+........+.+.+++++++++|.|| +++||+++.+. .+|+++.
T Consensus 832 SgGEkQRl~LAraL~~--~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TV----IiitH~~~~i~-~aD~ii~ 904 (943)
T PRK00349 832 SGGEAQRVKLAKELSK--RSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTV----VVIEHNLDVIK-TADWIID 904 (943)
T ss_pred CHHHHHHHHHHHHHhc--CCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE----EEEecCHHHHH-hCCEEEE
Confidence 3448999999999999 98 9999999966666667778888999988789999 99999999885 7999999
Q ss_pred ec
Q 030541 157 FC 158 (175)
Q Consensus 157 ~~ 158 (175)
+.
T Consensus 905 Lg 906 (943)
T PRK00349 905 LG 906 (943)
T ss_pred ec
Confidence 93
No 400
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.61 E-value=2.6e-16 Score=124.04 Aligned_cols=143 Identities=57% Similarity=0.988 Sum_probs=100.2
Q ss_pred EECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHHHHHHHHH
Q 030541 7 VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLD 86 (175)
Q Consensus 7 liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 86 (175)
++||.||||||+++.+...++-..-.+.+-+.||......|.+..+.++.+...+++++.+++++.......+.+....
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~- 79 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENI- 79 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGH-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHH-
Confidence 6899999999999999999877666688899999988888999999999999999999999999876666666666656
Q ss_pred HHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCc
Q 030541 87 DWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPP 152 (175)
Q Consensus 87 ~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~ 152 (175)
.|+...+... +++++|+|-|+|.+++.+.+.+..+++.+++ +..+++++++.++...+..++.+
T Consensus 80 d~l~~~i~~~-~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~-~~~~~~v~LvD~~~~~~~~~f~s 143 (238)
T PF03029_consen 80 DWLDEEIEKY-EDDYLLFDTPGQIELFTHSDSGRKIVERLQK-NGRLVVVFLVDSSFCSDPSKFVS 143 (238)
T ss_dssp HHHHHHHHHH-H-SEEEEE--SSHHHHHHSHHHHHHHHTSSS-----EEEEEE-GGG-SSHHHHHH
T ss_pred HHHHHHHhhc-CCcEEEEeCCCCEEEEEechhHHHHHHHHhh-hcceEEEEEEecccccChhhHHH
Confidence 5555555433 6699999999999999999999999999976 44555777999999988777765
No 401
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.59 E-value=5.9e-15 Score=113.85 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=72.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHHHH
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (175)
|++++|+|||||||||++|+++++.-- +.+ |..+.... ..++.. ..+...++..... ......+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~l--a~~---G~~vpa~~----~~l~~~-----d~I~~~~~~~d~~--~~~~S~f 92 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIM--AQI---GCFVPAEY----ATLPIF-----NRLLSRLSNDDSM--ERNLSTF 92 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH--HHc---CCCcchhh----cCccCh-----hheeEecCCcccc--chhhhHH
Confidence 789999999999999999999987521 111 11110000 111111 1112222222111 1122233
Q ss_pred HH-HHHHHHHHHhhccCCCCEEEEeCCCccc-ccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCC
Q 030541 82 ED-NLDDWLAEELDNYLDDDYLVFDCPGQIE-LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLP 151 (175)
Q Consensus 82 ~~-~~~~~l~~~l~~~~~p~lliLDEP~~~~-~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~ 151 (175)
+. ..+......... +|+++++|||.... ..++......+++.+.+.+.++ +++||+.+.+....
T Consensus 93 s~e~~~~~~il~~~~--~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~----i~~TH~~~l~~~~~ 158 (204)
T cd03282 93 ASEMSETAYILDYAD--GDSLVLIDELGRGTSSADGFAISLAILECLIKKESTV----FFATHFRDIAAILG 158 (204)
T ss_pred HHHHHHHHHHHHhcC--CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEE----EEECChHHHHHHhh
Confidence 32 222222234455 89999999993332 2233333456788887779999 99999999887655
No 402
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.59 E-value=5.1e-15 Score=128.50 Aligned_cols=137 Identities=15% Similarity=0.087 Sum_probs=86.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEe-ecCc--ccccCCCCccCCcccc---------cc---HHHHHHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-NLDP--AAENFDYPVAMDIREL---------IS---LEDVMEE 65 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~-g~~~--~~~~~~~~~~~~~~~~---------~~---~~~~~~~ 65 (175)
.||-+-|.||||||||||+|+|+|+.|.-+|+|.+- +.+. -.+. .|.+.-+.++. +. ..+++..
T Consensus 418 ~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~-PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~ 496 (604)
T COG4178 418 PGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQR-PYLPQGTLREALCYPNAAPDFSDAELVAVLHK 496 (604)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCC-CCCCCccHHHHHhCCCCCCCCChHHHHHHHHH
Confidence 389999999999999999999999999999998764 2110 0011 11111111111 22 3445555
Q ss_pred hCCCCCC-------chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEee
Q 030541 66 LGLGPNG-------GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (175)
Q Consensus 66 ~~l~~~~-------~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l 138 (175)
++++... .+.. .-+..++||.++||.+.+ +|++++|||-+...+-+..+.+.+.+++- -.+.|| +
T Consensus 497 vgL~~L~~rl~~~~~W~~-vLS~GEqQRlafARilL~--kP~~v~LDEATsALDe~~e~~l~q~l~~~-lp~~tv----I 568 (604)
T COG4178 497 VGLGDLAERLDEEDRWDR-VLSGGEQQRLAFARLLLH--KPKWVFLDEATSALDEETEDRLYQLLKEE-LPDATV----I 568 (604)
T ss_pred cCcHHHHHHHhccCcHhh-hcChhHHHHHHHHHHHHc--CCCEEEEecchhccChHHHHHHHHHHHhh-CCCCEE----E
Confidence 6655321 1111 123348999999999999 99999999994444344344444444442 147888 8
Q ss_pred eehhchhh
Q 030541 139 LDSQVCIR 146 (175)
Q Consensus 139 ~~sH~~~~ 146 (175)
.++|....
T Consensus 569 SV~Hr~tl 576 (604)
T COG4178 569 SVGHRPTL 576 (604)
T ss_pred Eeccchhh
Confidence 88997553
No 403
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.59 E-value=5.8e-15 Score=112.74 Aligned_cols=159 Identities=15% Similarity=0.130 Sum_probs=103.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccc-------cCCC-----------CccCCccccccHHH--
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDY-----------PVAMDIRELISLED-- 61 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~-------~~~~-----------~~~~~~~~~~~~~~-- 61 (175)
|....++|.||||||||+|+++|---.-.|.|.+.|.++-.. +..| ........-+....
T Consensus 40 gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi 119 (291)
T KOG2355|consen 40 GSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI 119 (291)
T ss_pred CceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccccccccccHHHHH
Confidence 677889999999999999999997655568999988765220 0111 00000011111122
Q ss_pred -------------HHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH-
Q 030541 62 -------------VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK- 127 (175)
Q Consensus 62 -------------~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~- 127 (175)
+.+.+++... ++.-.-+-.|+.|.-++.++.+ .=++|+|||-+...+.-++.-+.+++++-.
T Consensus 120 fgV~g~dp~Rre~LI~iLDIdl~--WRmHkvSDGqrRRVQicMGLL~--PfkVLLLDEVTVDLDVlARadLLeFlkeEce 195 (291)
T KOG2355|consen 120 FGVGGDDPERREKLIDILDIDLR--WRMHKVSDGQRRRVQICMGLLK--PFKVLLLDEVTVDLDVLARADLLEFLKEECE 195 (291)
T ss_pred hhccCCChhHhhhhhhheeccce--EEEeeccccchhhhHHHHhccc--ceeEEEeeeeEeehHHHHHHHHHHHHHHHHh
Confidence 2222222111 1111112236777888888887 779999999944443334444555777654
Q ss_pred hCCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
++|.|| ++.||..+-.++...+++++.+|.-+.+-.|
T Consensus 196 ~RgatI----VYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~ 232 (291)
T KOG2355|consen 196 QRGATI----VYATHIFDGLETWPTHLVYIKSGKLVDNLKY 232 (291)
T ss_pred hcCcEE----EEEeeeccchhhcchhEEEecCCeeeecccc
Confidence 569999 9999999999999999999999988775443
No 404
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.55 E-value=2.5e-14 Score=120.59 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=120.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCc-c--------cccCCCCc----------cCCcccccc---
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-A--------AENFDYPV----------AMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~-~--------~~~~~~~~----------~~~~~~~~~--- 58 (175)
.|||+||.|-.|-|-+-|+.+|+|+.++.+|+|.++|.+. . ....++.| .++..+++.
T Consensus 283 ~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~ 362 (501)
T COG3845 283 AGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGR 362 (501)
T ss_pred cCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhh
Confidence 4999999999999999999999999999999999999875 1 11233333 222222221
Q ss_pred --------------------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccc
Q 030541 59 --------------------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHV 116 (175)
Q Consensus 59 --------------------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~ 116 (175)
..++.++++.-.... ..+..++| .+|+..++|.+.. +|++||+.+|++..+..+.
T Consensus 363 ~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~-~~~a~~LSGGNqQK~IlaREl~~--~p~lLI~~qPTrGLDvgA~ 439 (501)
T COG3845 363 HDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP-DAPARSLSGGNQQKLILARELAR--RPDLLIAAQPTRGLDVGAI 439 (501)
T ss_pred ccccccccccccCHHHHHHHHHHHHHHcCccCCCC-CcchhhcCCcceehhhhhhhhcc--CCCEEEEcCCCccccHHHH
Confidence 133444454432221 12234444 6688899999999 9999999999888888888
Q ss_pred hhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 117 PVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 117 ~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+.+.+.|.+.+++|++| +++|-+++|+..+|||+.++..|..+
T Consensus 440 ~~I~~~l~e~r~~G~AV----LLiS~dLDEil~lsDrIaVi~~Gri~ 482 (501)
T COG3845 440 EFIHERLLELRDAGKAV----LLISEDLDEILELSDRIAVIYEGRIV 482 (501)
T ss_pred HHHHHHHHHHHhcCCEE----EEEehhHHHHHHhhheeeeeeCCcee
Confidence 89999999999999999 99999999999999999999988765
No 405
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.55 E-value=7.7e-15 Score=114.61 Aligned_cols=137 Identities=11% Similarity=0.088 Sum_probs=74.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc-cccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+|++++|.||||||||||++.++-..- ...| .+.|.-. ...-....+++.+++.... .....
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g--------------~~vpa~~-~~~~~~~~il~~~~l~d~~--~~~lS 91 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIG--------------CFVPCDS-ADIPIVDCILARVGASDSQ--LKGVS 91 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHHHHhC--------------CCcCccc-EEEeccceeEeeeccccch--hcCcC
Confidence 378999999999999999999873200 0011 0111000 0000111222333333221 11111
Q ss_pred HHHHHHHHHHHHHh--hccCCCCEEEEeCCCcc-cccccchhHHHHHHHHHh-CCCcEEEEeeeehhchhhhhcCCccee
Q 030541 80 HLEDNLDDWLAEEL--DNYLDDDYLVFDCPGQI-ELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIV 155 (175)
Q Consensus 80 ~~~~~~~~~l~~~l--~~~~~p~lliLDEP~~~-~~~~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~ 155 (175)
. .++++..+++.+ .. +|++++||||... .-.+.....+.+++.+.+ .+.++ +++||+ .++.++++++.
T Consensus 92 ~-~~~e~~~~a~il~~~~--~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~v----lisTH~-~el~~~~~~~~ 163 (222)
T cd03285 92 T-FMAEMLETAAILKSAT--ENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFC----LFATHF-HELTALADEVP 163 (222)
T ss_pred h-HHHHHHHHHHHHHhCC--CCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeE----EEEech-HHHHHHhhcCC
Confidence 1 133334445555 45 9999999999222 112222223345566654 47888 999995 88889999877
Q ss_pred Eeccchh
Q 030541 156 CFCCTHT 162 (175)
Q Consensus 156 ~~~~~~~ 162 (175)
.+..++.
T Consensus 164 ~i~~g~~ 170 (222)
T cd03285 164 NVKNLHV 170 (222)
T ss_pred CeEEEEE
Confidence 7766554
No 406
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.54 E-value=3.7e-14 Score=110.07 Aligned_cols=125 Identities=18% Similarity=0.114 Sum_probs=71.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhc--cCccccceEEEeecCcccccCCCCccCCcccccc-HHHHHHHhCCCCCCchhhhHH
Q 030541 3 YAQLVIGPAGSGKSTYCSSLYR--HCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS-LEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~g--l~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 79 (175)
.+++|.||||+|||||+|.++. +. +..|....... . ...+.. +....+. ..++.+.+ ..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~-~---~~~~~d--~i~~~l~~~~si~~~~-----------S~ 91 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADS-A---TIGLVD--KIFTRMSSRESVSSGQ-----------SA 91 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCC-c---EEeeee--eeeeeeCCccChhhcc-----------ch
Confidence 6899999999999999999984 33 45665543211 1 111111 1100000 00011100 01
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccc-cccchhHHHHHHHHHhC---CCcEEEEeeeehhchhhhhcCC
Q 030541 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIEL-FTHVPVLRNFVDHLKSR---NFNVCAVYLLDSQVCIRFRTLP 151 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~-~~~~~~~~~~l~~l~~~---g~tvli~~l~~sH~~~~~~~~~ 151 (175)
...+.++...++..+. +|+++++|||..... ..+......+++.+.++ +.++ +++||+.+.+....
T Consensus 92 f~~el~~l~~~l~~~~--~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~v----li~TH~~~l~~~~~ 161 (213)
T cd03281 92 FMIDLYQVSKALRLAT--RRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRV----IVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHHHhCC--CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEE----EEEcChHHHHHhhh
Confidence 1224455555666677 999999999933332 23344445677787654 2467 99999999887653
No 407
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.53 E-value=3.4e-14 Score=117.99 Aligned_cols=157 Identities=14% Similarity=0.098 Sum_probs=106.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhcc--------CccccceEEEeecCccccc-CCCCccC---Cccccc--------cHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRH--------CETVRRTMHIVNLDPAAEN-FDYPVAM---DIRELI--------SLE 60 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl--------~~~~~G~I~i~g~~~~~~~-~~~~~~~---~~~~~~--------~~~ 60 (175)
+||+++++|+|||||||+++.|+|. ++|++|.|.+--......- -.+.+.+ +..+.+ ...
T Consensus 408 pGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~Av 487 (593)
T COG2401 408 PGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAV 487 (593)
T ss_pred CCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHH
Confidence 5999999999999999999999986 5689999987433221110 0111111 111111 145
Q ss_pred HHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHH-hCCCcEEEEe
Q 030541 61 DVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVY 137 (175)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-~~g~tvli~~ 137 (175)
+++...+++.......+..+++ |+-+..||+.+.. .|.+++.||-+...+......+..-+.+++ +.|.|.
T Consensus 488 eILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllae--rpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTl---- 561 (593)
T COG2401 488 EILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAE--RPNVLLIDEFAAHLDELTAVRVARKISELAREAGITL---- 561 (593)
T ss_pred HHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhc--CCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeE----
Confidence 6777777766554444555666 7777889999999 999999999933333333334445566664 568999
Q ss_pred eeehhchhhhhcC-CcceeEeccchhh
Q 030541 138 LLDSQVCIRFRTL-PPCIVCFCCTHTV 163 (175)
Q Consensus 138 l~~sH~~~~~~~~-~~~~~~~~~~~~~ 163 (175)
+++||+.+....+ .|++++.+=+...
T Consensus 562 ivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 562 IVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred EEEecCHHHHhccCCceeEEeeccccc
Confidence 9999999988888 5777776655443
No 408
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.5e-14 Score=122.41 Aligned_cols=147 Identities=18% Similarity=0.064 Sum_probs=101.8
Q ss_pred EEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCCccC---------Ccc----ccc------cHHHHHH
Q 030541 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAM---------DIR----ELI------SLEDVME 64 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~---------~~~----~~~------~~~~~~~ 64 (175)
.++++|+||+||||++|++.|-..|..|-+.+.+.- .+++.... +.. ..+ ....-+.
T Consensus 392 Ri~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~----ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~ 467 (582)
T KOG0062|consen 392 RISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRL----RIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLG 467 (582)
T ss_pred hhheeccCchhHHHHHHHHhccCCcccceeeecccc----eecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHH
Confidence 568999999999999999999999999988775432 11111100 000 000 1344566
Q ss_pred HhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehh
Q 030541 65 ELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (175)
Q Consensus 65 ~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH 142 (175)
.++++....... ...+| |+.|+.+|..... +|-+|+||||+...+++..+.+.+.| +.-+..| +++||
T Consensus 468 ~~Gl~g~la~~s-i~~LSGGQKsrvafA~~~~~--~PhlLVLDEPTNhLD~dsl~AL~~Al---~~F~GGV----v~VSH 537 (582)
T KOG0062|consen 468 SFGLSGELALQS-IASLSGGQKSRVAFAACTWN--NPHLLVLDEPTNHLDRDSLGALAKAL---KNFNGGV----VLVSH 537 (582)
T ss_pred hcCCCchhhhcc-ccccCCcchhHHHHHHHhcC--CCcEEEecCCCccccHHHHHHHHHHH---HhcCCcE----EEEEC
Confidence 677776653322 34455 7777777777777 99999999996665555444444444 4445579 99999
Q ss_pred chhhhhcCCcceeEeccchhhH
Q 030541 143 VCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
+.+.+...|.-+++.+.|.++.
T Consensus 538 d~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 538 DEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999887754
No 409
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.9e-14 Score=120.43 Aligned_cols=135 Identities=16% Similarity=0.158 Sum_probs=83.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCCc---------c------CCccccccHHHH---H
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPV---------A------MDIRELISLEDV---M 63 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~---------~------~~~~~~~~~~~~---~ 63 (175)
-..++|+||||.|||||++.+.|-+.|+.|+.+-+.. -.+++.. . ++...+++..+. +
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhr----L~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~L 688 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHR----LRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQL 688 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCCCCCcchhhccce----eeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHh
Confidence 3578999999999999999999999999998864321 0111110 0 011122233333 3
Q ss_pred HHhCCCCCCchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeeh
Q 030541 64 EELGLGPNGGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (175)
Q Consensus 64 ~~~~l~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~s 141 (175)
-.+++.... .......+ .++.|+.++...+. .|++||||||+........+.+.+.|.++ +..| +++|
T Consensus 689 G~fGL~sHA-HTikikdLSGGQKaRValaeLal~--~PDvlILDEPTNNLDIESIDALaEAIney---~GgV----i~Vs 758 (807)
T KOG0066|consen 689 GTFGLASHA-HTIKIKDLSGGQKARVALAELALG--GPDVLILDEPTNNLDIESIDALAEAINEY---NGGV----IMVS 758 (807)
T ss_pred hhhhhhhcc-ceEeeeecCCcchHHHHHHHHhcC--CCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcE----EEEe
Confidence 333333221 11111223 37788888887677 99999999996666665455555555443 5578 8999
Q ss_pred hchhhhhcC
Q 030541 142 QVCIRFRTL 150 (175)
Q Consensus 142 H~~~~~~~~ 150 (175)
|+-..+-+-
T Consensus 759 HDeRLi~eT 767 (807)
T KOG0066|consen 759 HDERLIVET 767 (807)
T ss_pred cccceeeec
Confidence 997765443
No 410
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.53 E-value=2.2e-14 Score=108.92 Aligned_cols=126 Identities=15% Similarity=0.131 Sum_probs=67.8
Q ss_pred EEEEECCCCCCHHHHHHHHh-ccCccccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHHHHH
Q 030541 4 AQLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~-gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (175)
++.|.||||+||||++|.++ ..+-+..|...... .-.+.+.. ..... ++.... .......++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~----~~~~~~~d--~il~~---------~~~~d~--~~~~~s~fs 63 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAE----SAELPVFD--RIFTR---------IGASDS--LAQGLSTFM 63 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeeh----heEecccc--eEEEE---------eCCCCc--hhccccHHH
Confidence 46899999999999999998 34334444322110 01111111 11111 111111 111112333
Q ss_pred HHHHHHHHHHhhccCCCCEEEEeCCCcccccc-cchhHHHHHHHHHhC-CCcEEEEeeeehhchhhhhcCCc
Q 030541 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFT-HVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPP 152 (175)
Q Consensus 83 ~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~-~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~ 152 (175)
...+ .+++.+....+|+++++|||....... .....+.+++.+.++ +.++ +++||+.+ +.++++
T Consensus 64 ~~~~-~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~i----ii~TH~~~-l~~~~~ 129 (185)
T smart00534 64 VEMK-ETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALT----LFATHYHE-LTKLAD 129 (185)
T ss_pred HHHH-HHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeE----EEEecHHH-HHHHhh
Confidence 2221 134433333489999999994433333 333345567777664 8889 99999984 667765
No 411
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=5e-15 Score=123.84 Aligned_cols=83 Identities=18% Similarity=0.117 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccch-
Q 030541 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH- 161 (175)
Q Consensus 83 ~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~- 161 (175)
.+.|..|+|++.. +|-+|.||||+.....++..|+.+.|.-|+ +|. +|+||+-....+.|..|+.+++-.
T Consensus 417 WRMRvSLARALfl--EPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTL----LIVSHDQgFLD~VCtdIIHLD~qkL 487 (807)
T KOG0066|consen 417 WRMRVSLARALFL--EPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTL----LIVSHDQGFLDSVCTDIIHLDNQKL 487 (807)
T ss_pred eeeehhHHHHHhc--CceeeeecCCccccccceeeehhhHHhhhh---hee----EEEecccchHHHHHHHHhhhhhhhh
Confidence 4567899999998 999999999988888888888889998884 489 999999999999999888887654
Q ss_pred hhHHhhhhccccc
Q 030541 162 TVVQRAYSFLFHM 174 (175)
Q Consensus 162 ~~~~~~~~~~~~~ 174 (175)
-+|-++|..|-+|
T Consensus 488 hyYrGNY~~FKKm 500 (807)
T KOG0066|consen 488 HYYRGNYTLFKKM 500 (807)
T ss_pred hhhcchHHHHHHH
Confidence 4566677766544
No 412
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.50 E-value=6.6e-14 Score=108.91 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=66.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhccCcc-ccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHHHH
Q 030541 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~-~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (175)
++++|+|||||||||++|.++++.-. ..|.. .+.....+.+.. + .+....+.+++..+.. ...
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~----vp~~~~~i~~~~--~---i~~~~~~~~~ls~g~s-------~f~ 94 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSF----VPASKAEIGVVD--R---IFTRIGASDDLAGGRS-------TFM 94 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCCe----eccccceeccee--e---EeccCCchhhhccCcc-------hHH
Confidence 68999999999999999999875421 11211 011111222221 1 1111112222221110 001
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCCccc-ccccchhHHHHHHHHHhC-CCcEEEEeeeehhchhhhhcCCccee
Q 030541 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIE-LFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIV 155 (175)
Q Consensus 82 ~~~~~~~l~~~l~~~~~p~lliLDEP~~~~-~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~ 155 (175)
.+.. .++..+....+|++++||||.... -.+.....+.+++.+.+. +.++ +++||+. ++.++++++.
T Consensus 95 ~e~~--~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~v----i~~TH~~-~l~~l~~~~~ 163 (216)
T cd03284 95 VEMV--ETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKT----LFATHYH-ELTELEGKLP 163 (216)
T ss_pred HHHH--HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcE----EEEeCcH-HHHHHhhcCC
Confidence 1222 122222222399999999992221 122222334567777666 8899 9999995 4555555443
No 413
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.43 E-value=6e-13 Score=103.89 Aligned_cols=125 Identities=14% Similarity=0.143 Sum_probs=70.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhc-cCccccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~g-l~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+|++++|.||||+||||++|++++ .+.+..|..... ... ...+.. +....+ + ..........
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a-~~~---~~~~~~--~i~~~~---------~--~~d~~~~~~S 92 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA-SSA---TLSIFD--SVLTRM---------G--ASDSIQHGMS 92 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc-Cce---EEeccc--eEEEEe---------c--Cccccccccc
Confidence 378999999999999999999999 667888875543 211 122221 111000 0 0000000001
Q ss_pred HHH-HHHHHHHHHHhhccCCCCEEEEeCCCcc-cccccchhHHHHHHHHHhC-CCcEEEEeeeehhchhhhh
Q 030541 80 HLE-DNLDDWLAEELDNYLDDDYLVFDCPGQI-ELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFR 148 (175)
Q Consensus 80 ~~~-~~~~~~l~~~l~~~~~p~lliLDEP~~~-~~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~ 148 (175)
.+. +..+ ++..+....+++++++|||... ...++....+.+++.+.+. +.++ +++||+.+...
T Consensus 93 tF~~e~~~--~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~----i~~TH~~~l~~ 158 (222)
T cd03287 93 TFMVELSE--TSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLV----LFVTHYPSLGE 158 (222)
T ss_pred hHHHHHHH--HHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeE----EEEcccHHHHH
Confidence 111 1111 1222222238999999999333 2222333345577777665 7889 99999988653
No 414
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=6.1e-13 Score=106.97 Aligned_cols=73 Identities=11% Similarity=-0.129 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhcc--CCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccc
Q 030541 83 DNLDDWLAEELDNY--LDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 83 ~~~~~~l~~~l~~~--~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
++++..+++++... .+|+++++|||...........+.+.++++.+ +.|+ +++||++. +..++++++.+..+
T Consensus 175 ~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~ti----i~isH~~~-~~~~~d~~~~l~~~ 248 (276)
T cd03241 175 ELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQV----LCITHLPQ-VAAMADNHFLVEKE 248 (276)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEE----EEEechHH-HHHhcCcEEEEEEe
Confidence 67777777754322 28999999999666666666777778888754 6788 99999988 45799998888876
Q ss_pred h
Q 030541 161 H 161 (175)
Q Consensus 161 ~ 161 (175)
.
T Consensus 249 ~ 249 (276)
T cd03241 249 V 249 (276)
T ss_pred c
Confidence 3
No 415
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.34 E-value=2.3e-12 Score=107.49 Aligned_cols=152 Identities=15% Similarity=0.147 Sum_probs=97.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhccCccccc-eEEEeecCcccccCCCCccCCcccccc------------HHHHHHHhCCC
Q 030541 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENFDYPVAMDIRELIS------------LEDVMEELGLG 69 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G-~I~i~g~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~ 69 (175)
|++..+|.||-||||+++.++|.++|++| +|-..+.....+.+.-.+.-+++..+. ..++++-+...
T Consensus 368 eiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie 447 (592)
T KOG0063|consen 368 EIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIE 447 (592)
T ss_pred eeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHH
Confidence 68999999999999999999999999876 343333322222222111112222221 12333333221
Q ss_pred CCCchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHH-HhCCCcEEEEeeeehhchhh
Q 030541 70 PNGGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL-KSRNFNVCAVYLLDSQVCIR 146 (175)
Q Consensus 70 ~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l-~~~g~tvli~~l~~sH~~~~ 146 (175)
.-. ......+ .+.||.+++..+-. .+++++.|||+...+...+-.....++++ -..++|- .++-|++.-
T Consensus 448 ~i~--dqevq~lSggelQRval~KOGGK--pAdvYliDEpsAylDSeQRi~AskvikRfilhakkta----fvVEhdfIm 519 (592)
T KOG0063|consen 448 NII--DQEVQGLSGGELQRVALALCLGK--PADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTA----FVVEHDFIM 519 (592)
T ss_pred HHH--hHHhhcCCchhhHHHHHHHhcCC--CCceEEecCchhhcChHHHHHHHHHHHHHHHhccchh----hhhhhHHHH
Confidence 111 1111222 37788888888888 99999999996554444444445566664 3456788 899999999
Q ss_pred hhcCCcceeEeccchh
Q 030541 147 FRTLPPCIVCFCCTHT 162 (175)
Q Consensus 147 ~~~~~~~~~~~~~~~~ 162 (175)
+-..+|++++..+.+-
T Consensus 520 aTYladrvivf~G~ps 535 (592)
T KOG0063|consen 520 ATYLADRVIVFEGQPS 535 (592)
T ss_pred HHhhcceeEEEecCcc
Confidence 9999999999887655
No 416
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.32 E-value=3.2e-12 Score=115.35 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=68.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcc-Cccccc-eEEEeecCcccccCCCCccCCccccccH-HHHHHHhCCCCCCchhhhHH
Q 030541 3 YAQLVIGPAGSGKSTYCSSLYRH-CETVRR-TMHIVNLDPAAENFDYPVAMDIRELISL-EDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl-~~~~~G-~I~i~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 79 (175)
++++|.||||+|||||+|.++|. +.+..| .|..... ..+.+.. +....+.. .++.+ ...
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~----~~~~~~d--~i~~~i~~~~si~~------------~LS 384 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEH----SEIPYFE--EIFADIGDEQSIEQ------------NLS 384 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCcc----ccccchh--heeeecChHhHHhh------------hhh
Confidence 68999999999999999999998 556666 2221100 0111111 11111111 11111 112
Q ss_pred HHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhH-HHHHHHHHhCCCcEEEEeeeehhchhhh
Q 030541 80 HLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL-RNFVDHLKSRNFNVCAVYLLDSQVCIRF 147 (175)
Q Consensus 80 ~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~-~~~l~~l~~~g~tvli~~l~~sH~~~~~ 147 (175)
.++ +++...+.+.+ . +|+++++|||+..........+ ..+++.+++.|.++ +++||+.+..
T Consensus 385 tfS~~m~~~~~il~~~-~--~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~v----iitTH~~eL~ 448 (771)
T TIGR01069 385 TFSGHMKNISAILSKT-T--ENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQV----LITTHYKELK 448 (771)
T ss_pred HHHHHHHHHHHHHHhc-C--CCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEE----EEECChHHHH
Confidence 223 22222223222 4 8999999999444333333333 56788887788889 9999997753
No 417
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.28 E-value=7.2e-12 Score=98.36 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=30.4
Q ss_pred CCeEEEEECCCCCCHHHH-HHHHhccCccccceEEEee
Q 030541 1 MGYAQLVIGPAGSGKSTY-CSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTL-lk~i~gl~~~~~G~I~i~g 37 (175)
+|+++.|.|+|||||||| ++.+++..++....+++..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 489999999999999999 6899988776555566654
No 418
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.27 E-value=1.1e-11 Score=105.64 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=78.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCCcc------CCcccccc-----------------
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVA------MDIRELIS----------------- 58 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~------~~~~~~~~----------------- 58 (175)
|--+-|+||||||||+|+|+|.|+.|...|...+- +...+.|.|. -+.++++-
T Consensus 508 G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P----~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~d 583 (728)
T KOG0064|consen 508 GMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP----RPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQD 583 (728)
T ss_pred CceEEEECCCCccHHHHHHHHhccCcccCCeeecC----CCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHH
Confidence 66678999999999999999999999988877642 1111222211 01222211
Q ss_pred HHHHHHHhCC----------CCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHh
Q 030541 59 LEDVMEELGL----------GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS 128 (175)
Q Consensus 59 ~~~~~~~~~l----------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~ 128 (175)
...++..+.+ +.-..|.. .-+..++||..+||.+.+ +|++.+|||-+...-.+ .-..+.+..+.
T Consensus 584 L~~iL~~v~L~~i~qr~~g~da~~dWkd-~LsgGekQR~~mARm~yH--rPkyalLDEcTsAvsid---vE~~i~~~ak~ 657 (728)
T KOG0064|consen 584 LEAILDIVHLEHILQREGGWDAVRDWKD-VLSGGEKQRMGMARMFYH--RPKYALLDECTSAVSID---VEGKIFQAAKD 657 (728)
T ss_pred HHHHHHHhhHHHHHHhccChhhhccHHh-hccchHHHHHHHHHHHhc--Ccchhhhhhhhcccccc---hHHHHHHHHHh
Confidence 1222222221 11111211 112338899999999999 99999999992221111 11223334455
Q ss_pred CCCcEEEEeeeehhchhhh
Q 030541 129 RNFNVCAVYLLDSQVCIRF 147 (175)
Q Consensus 129 ~g~tvli~~l~~sH~~~~~ 147 (175)
.|.+. +-+||+....
T Consensus 658 ~gi~l----lsithrpslw 672 (728)
T KOG0064|consen 658 AGISL----LSITHRPSLW 672 (728)
T ss_pred cCceE----EEeecCccHH
Confidence 68888 8889987654
No 419
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.27 E-value=4e-12 Score=103.80 Aligned_cols=125 Identities=15% Similarity=0.124 Sum_probs=76.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHHHH
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (175)
|+.+++.||+|||||||++++++++++..|.+.+.+ +.+-.... + +....+. ...... . .
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~-~--~~~~l~~----------~~~~~~-~--~-- 203 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPH-P--NYVHLFY----------SKGGQG-L--A-- 203 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCC-C--CEEEEEe----------cCCCCC-c--C--
Confidence 778999999999999999999999999888877742 21111110 1 0000000 000000 0 0
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccc
Q 030541 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 82 ~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
.......+..++.. +|+++++|||...+.+. +++.+...+.++ +.++|... +...++|+..+..+
T Consensus 204 ~~~~~~~l~~~Lr~--~pd~ii~gE~r~~e~~~-------~l~a~~~g~~~~----i~T~Ha~~-~~~~~~Rl~~l~~~ 268 (308)
T TIGR02788 204 KVTPKDLLQSCLRM--RPDRIILGELRGDEAFD-------FIRAVNTGHPGS----ITTLHAGS-PEEAFEQLALMVKS 268 (308)
T ss_pred ccCHHHHHHHHhcC--CCCeEEEeccCCHHHHH-------HHHHHhcCCCeE----EEEEeCCC-HHHHHHHHHHHhhc
Confidence 01122345667777 99999999994444444 777776433455 66777766 66667887777553
No 420
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.26 E-value=3.2e-11 Score=103.67 Aligned_cols=148 Identities=11% Similarity=0.102 Sum_probs=91.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecC----c--ccccCCCCccCCccccc-----------------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD----P--AAENFDYPVAMDIRELI----------------- 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~----~--~~~~~~~~~~~~~~~~~----------------- 57 (175)
.|+-+-|.||||||||+|+|.++|+.+..+|.+..-... . -.+...+... +.++++
T Consensus 460 ~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~ 538 (659)
T KOG0060|consen 460 SGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDE 538 (659)
T ss_pred CCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCcccc-chhheeeccCccccccccCCCHH
Confidence 378899999999999999999999999999998863321 0 0011110000 222221
Q ss_pred cHHHHHHHhCCCCC----------CchhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHH
Q 030541 58 SLEDVMEELGLGPN----------GGLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 58 ~~~~~~~~~~l~~~----------~~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
.....++++.++.- ..+.+ .+ +..++||.++||-+.+ +|++-+|||-+.....+ .-..+-+.
T Consensus 539 ~i~r~Le~v~L~hl~~r~ggld~~~~~dW-~dvLS~GEqQRLa~ARLfy~--kPk~AiLDE~TSAv~~d---vE~~~Yr~ 612 (659)
T KOG0060|consen 539 DILRILENVQLGHLLEREGGLDQQVDWDW-MDVLSPGEQQRLAFARLFYH--KPKFAILDECTSAVTED---VEGALYRK 612 (659)
T ss_pred HHHHHHHHhhhhhHHHHhCCCCchhhccH-HhhcCHHHHHHHHHHHHHhc--CCceEEeechhhhccHH---HHHHHHHH
Confidence 12344555544321 11111 22 3348999999999999 99999999992221111 11123455
Q ss_pred HHhCCCcEEEEeeeehhchhhhhcCCcceeEeccc
Q 030541 126 LKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 126 l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
+++.|.|. +=++|+-. ..++=+-+.-++++
T Consensus 613 ~r~~giT~----iSVgHRkS-L~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 613 CREMGITF----ISVGHRKS-LWKFHDYVLRMDGR 642 (659)
T ss_pred HHHcCCeE----EEeccHHH-HHhhhhEEEEecCC
Confidence 67789999 88999865 44666666666663
No 421
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.25 E-value=3.5e-11 Score=102.34 Aligned_cols=139 Identities=14% Similarity=0.131 Sum_probs=85.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCccccc------CC---------CCccCC------ccccccH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAEN------FD---------YPVAMD------IRELISL 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~------~~---------~~~~~~------~~~~~~~ 59 (175)
+|++++|+|+||+|||||+++|+|+.+++.|.|.+.|....+-. .. +....+ ....+..
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~~~a 236 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTA 236 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHHHHH
Confidence 59999999999999999999999999999999998776532100 00 000000 0000001
Q ss_pred HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEe-----------------CC--CcccccccchhHH
Q 030541 60 EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFD-----------------CP--GQIELFTHVPVLR 120 (175)
Q Consensus 60 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLD-----------------EP--~~~~~~~~~~~~~ 120 (175)
.++.|.+ ..-..-=++++| || ...........+.
T Consensus 237 ~~iAEyf---------------------------r~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~ 289 (438)
T PRK07721 237 TAIAEYF---------------------------RDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILP 289 (438)
T ss_pred HHHHHHH---------------------------HHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHH
Confidence 1222222 110111133344 65 3333333444566
Q ss_pred HHHHHHHh--CCC-cEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 121 NFVDHLKS--RNF-NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 121 ~~l~~l~~--~g~-tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
++++++.. +|. |.+.++++++|++++ .+++++..+..++.+..++.
T Consensus 290 ~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~l 338 (438)
T PRK07721 290 KLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQL 338 (438)
T ss_pred HHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEeccH
Confidence 68888763 563 555555999999995 89999999999988877653
No 422
>PRK13695 putative NTPase; Provisional
Probab=99.24 E-value=9.6e-12 Score=93.36 Aligned_cols=145 Identities=14% Similarity=0.132 Sum_probs=71.4
Q ss_pred EEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccc-cCCCCccCCcccccc-HHHHHHHhCC-CCCC-chhhhHH
Q 030541 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-NFDYPVAMDIRELIS-LEDVMEELGL-GPNG-GLIYCME 79 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~l-~~~~-~~~~~~~ 79 (175)
.++|+|+||||||||++.+++.+.+ .| +...|.-.+.. ...-...+...+... ....+...++ .... .......
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 79 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EG-YKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVNL 79 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC-CeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEeh
Confidence 4789999999999999999887665 45 33333211100 000000001111100 0001111122 1111 0000001
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEecc
Q 030541 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
+..++....+.+.... +|+++++|||+..+... ..+.+.+.++.+.+.++ ++++|+ ..+..+++++..+..
T Consensus 80 sgle~~~~~l~~~~l~--~~~~lllDE~~~~e~~~--~~~~~~l~~~~~~~~~~----i~v~h~-~~~~~~~~~i~~~~~ 150 (174)
T PRK13695 80 EDLERIGIPALERALE--EADVIIIDEIGKMELKS--PKFVKAVEEVLDSEKPV----IATLHR-RSVHPFVQEIKSRPG 150 (174)
T ss_pred HHHHHHHHHHHHhccC--CCCEEEEECCCcchhhh--HHHHHHHHHHHhCCCeE----EEEECc-hhhHHHHHHHhccCC
Confidence 1113333344444556 89999999973322222 23445677766778899 899997 455566665544433
No 423
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.21 E-value=1.7e-10 Score=87.07 Aligned_cols=150 Identities=11% Similarity=0.083 Sum_probs=78.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhccCccc--cce------EEEeecCccc-------ccCCCCccCCccccccHHHHHHHhC
Q 030541 3 YAQLVIGPAGSGKSTYCSSLYRHCETV--RRT------MHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELG 67 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~--~G~------I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (175)
-|+.|+|.||+|||||+.+|+-....+ .|. +...+-.... ......+.+...+.+..-+.++++.
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~as~~De~~ 117 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVASYLDEAD 117 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhHHHHHHHHHHhhh
Confidence 378999999999999999997655422 222 2111111000 0000001112233333334444443
Q ss_pred CCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchh
Q 030541 68 LGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCI 145 (175)
Q Consensus 68 l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~ 145 (175)
-.... ........| +-.-....+.+. ..-+++||||....-...+-.+...|+++.+.|.-+ +|+||..-
T Consensus 118 ~e~~~-~~~sLh~~SHGEsf~~i~~~rf~---~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~----IiATHSPi 189 (233)
T COG3910 118 GEANY-GGRSLHHMSHGESFLAIFHNRFN---GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQI----IIATHSPI 189 (233)
T ss_pred hhccc-CCcchhhhccchHHHHHHHHHhc---cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeE----EEEecChh
Confidence 21110 111111222 333223333332 788999999933332333444556888998889888 99999877
Q ss_pred hhhcCCcceeEeccc
Q 030541 146 RFRTLPPCIVCFCCT 160 (175)
Q Consensus 146 ~~~~~~~~~~~~~~~ 160 (175)
.+.---.+|+-++.+
T Consensus 190 LlAiP~A~I~~~~~~ 204 (233)
T COG3910 190 LLAIPGAEIYEISES 204 (233)
T ss_pred heeCCCcEEEEEecC
Confidence 665444455555444
No 424
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.20 E-value=3.4e-11 Score=93.82 Aligned_cols=50 Identities=10% Similarity=0.137 Sum_probs=35.5
Q ss_pred CCCEEEEeCCCcc-cccccchhHHHHHHHHHhC-CCcEEEEeeeehhchhhhhcCC
Q 030541 98 DDDYLVFDCPGQI-ELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLP 151 (175)
Q Consensus 98 ~p~lliLDEP~~~-~~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~ 151 (175)
+|+++++|||++. ...++....+.+++.+.+. +.++ +++||+.+.+..+.
T Consensus 109 ~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~----i~~TH~~el~~~~~ 160 (218)
T cd03286 109 PDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLT----LFSTHYHSLCDEFH 160 (218)
T ss_pred CCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcE----EEEeccHHHHHHhh
Confidence 8999999999433 2222233334457777665 8889 99999999887765
No 425
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.19 E-value=9.7e-11 Score=89.91 Aligned_cols=121 Identities=18% Similarity=0.155 Sum_probs=72.6
Q ss_pred EEEEECCCCCCHHHHHHHHhccCccc-cceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHHHHH
Q 030541 4 AQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~-~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (175)
++.|.||+||||||+++.+++.+.+. .|.|.....++.. ... .....+. ....+...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~-----~~~-~~~~~i~------q~~vg~~~---------- 60 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEF-----VHE-SKRSLIN------QREVGLDT---------- 60 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccc-----ccc-Cccceee------ecccCCCc----------
Confidence 68999999999999999999888743 5676665544311 100 0000000 00111110
Q ss_pred HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccc
Q 030541 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 83 ~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
......+++++.. +|+++++|||...+.. ...+ +....|..+ +.++|..... ..++|+..+...
T Consensus 61 ~~~~~~i~~aLr~--~pd~ii~gEird~e~~------~~~l-~~a~~G~~v----~~t~Ha~~~~-~~~~Rl~~l~~~ 124 (198)
T cd01131 61 LSFENALKAALRQ--DPDVILVGEMRDLETI------RLAL-TAAETGHLV----MSTLHTNSAA-KTIDRIIDVFPA 124 (198)
T ss_pred cCHHHHHHHHhcC--CcCEEEEcCCCCHHHH------HHHH-HHHHcCCEE----EEEecCCcHH-HHHhHHHhhcCc
Confidence 1122356778888 9999999999322211 2234 445678888 8889987644 567777766543
No 426
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.17 E-value=2.3e-10 Score=109.77 Aligned_cols=93 Identities=13% Similarity=0.006 Sum_probs=63.9
Q ss_pred HHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhcc-CCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEe
Q 030541 61 DVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNY-LDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (175)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~-~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~ 137 (175)
+.+..++++.-. ...+...+| +.||.-|+..+..- ..+.+++||||+...-....+.+.++++++.+.|.||
T Consensus 1681 ~~L~~vGLgYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tv---- 1755 (1809)
T PRK00635 1681 QALIDNGLGYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSV---- 1755 (1809)
T ss_pred HHHHHcCCCeee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeE----
Confidence 445555555322 111223333 88888999888750 1368999999955554555557777888899999999
Q ss_pred eeehhchhhhhcCCcceeEecc
Q 030541 138 LLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 138 l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
+++.|+++.+.. +|.++=|.+
T Consensus 1756 ivieH~~~~i~~-aD~iidlgp 1776 (1809)
T PRK00635 1756 IYIDHDPALLKQ-ADYLIEMGP 1776 (1809)
T ss_pred EEEeCCHHHHHh-CCEEEEcCC
Confidence 999999887755 886666554
No 427
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.17 E-value=4.8e-11 Score=87.06 Aligned_cols=132 Identities=19% Similarity=0.131 Sum_probs=68.7
Q ss_pred EEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHHHHHH
Q 030541 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 83 (175)
++.|.|+||+||||+++.+++...+..|.+.+...+......... ...+......+...+.... ........
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 72 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTER-----LIGESLKGALDNLIIVFAT---ADDPAAAR 72 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHH-----HhhhhhccccccEEEEEcC---CCCCcHHH
Confidence 478999999999999999999988777888776554221110000 0000000000000000000 00011112
Q ss_pred HHHHHHHHHhhccCCCCEEEEeCCCcccc----------cccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhc
Q 030541 84 NLDDWLAEELDNYLDDDYLVFDCPGQIEL----------FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRT 149 (175)
Q Consensus 84 ~~~~~l~~~l~~~~~p~lliLDEP~~~~~----------~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~ 149 (175)
..+...+..... +|+++++|||..... ......+..+....++.+.|+ ++++|.......
T Consensus 73 ~~~~~~~~~~~~--~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v----v~~~~~~~~~~~ 142 (165)
T cd01120 73 LLSKAERLRERG--GDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTV----IFTLQVPSGDKG 142 (165)
T ss_pred HHHHHHHHHhCC--CCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceE----EEEEecCCcccc
Confidence 222334445566 999999999932110 011233444444555568899 888887655443
No 428
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.13 E-value=8.3e-11 Score=98.33 Aligned_cols=156 Identities=15% Similarity=0.046 Sum_probs=95.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCc------------c-------cccCCCCccCCcccccc---
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP------------A-------AENFDYPVAMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~------------~-------~~~~~~~~~~~~~~~~~--- 58 (175)
.|++.|++|.||-||||-+++++|-.+|.-|.--- +-+. + ..+.......+.-+.++
T Consensus 99 pg~vlglvgtngigkstAlkilagk~kpnlg~~~~-pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 99 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDN-PPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred cchhccccccCcccHHHHHHHHhCCCCCCCCCCCC-CcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 38999999999999999999999999987664321 0000 0 00000000000001110
Q ss_pred ----------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHH
Q 030541 59 ----------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 ----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..++++.+.+..-..+.....+.++.|+.++|.+..+ .+++.++|||+...+.+.+-.....
T Consensus 178 k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq--~advyMFDEpSsYLDVKQRLkaA~~ 255 (592)
T KOG0063|consen 178 KGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQ--KADVYMFDEPSSYLDVKQRLKAAIT 255 (592)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhh--hcceeEecCCcccchHHHhhhHHHH
Confidence 1233343333322222222223346787888888888 9999999999655555544444556
Q ss_pred HHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchhh
Q 030541 123 VDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
++.+..-..-| +++-|++.....+.|-+-++++-...
T Consensus 256 IRsl~~p~~Yi----IVVEHDLsVLDylSDFiCcLYGvp~a 292 (592)
T KOG0063|consen 256 IRSLINPDRYI----IVVEHDLSVLDYLSDFICCLYGVPSA 292 (592)
T ss_pred HHHhhCCCCeE----EEEEeechHHHhhhcceeEEecCCcc
Confidence 77776666778 88999999888888877777665543
No 429
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.13 E-value=1.4e-09 Score=84.36 Aligned_cols=57 Identities=12% Similarity=0.139 Sum_probs=36.3
Q ss_pred HhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcce
Q 030541 92 ELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCI 154 (175)
Q Consensus 92 ~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~ 154 (175)
++..+...|+++||||....+..++..+..+|+++.+ +.=+ +++||+-..+ ..++..
T Consensus 152 A~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~----ii~Th~~~~~-~~a~~~ 208 (220)
T PF02463_consen 152 ALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQF----IITTHNPEMF-EDADKL 208 (220)
T ss_dssp HHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEE----EEE-S-HHHH-TT-SEE
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccc----cccccccccc-cccccc
Confidence 4445558899999999666666777788888888753 3567 8899996544 555543
No 430
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.12 E-value=1e-10 Score=105.89 Aligned_cols=130 Identities=12% Similarity=0.079 Sum_probs=70.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccC-ccccceEEEeecCcccc--cCCCCccCCccccccHHHHHHHhCCCCCCchhhhH
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHC-ETVRRTMHIVNLDPAAE--NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCM 78 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~-~~~~G~I~i~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (175)
+.++.|.|||++||||++|.++... -+..|-- -+... .+.+.. +.. . .++.........
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~-----vpa~~~~~i~~~~--~i~---~--------~ig~~~si~~~l 388 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLP-----IPANEPSEIPVFK--EIF---A--------DIGDEQSIEQSL 388 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCC-----cccCCCccccccc--eEE---E--------ecCCccchhhch
Confidence 3578999999999999999996431 1222210 01100 111111 010 0 111111111111
Q ss_pred HHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccc-cchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCccee
Q 030541 79 EHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIV 155 (175)
Q Consensus 79 ~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~-~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~ 155 (175)
..++ +++...+.+.+ . +|+++++|||+...... +......+++.+.+.|.++ +++||+.+......++..
T Consensus 389 StfS~~m~~~~~Il~~~-~--~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~v----IitTH~~el~~~~~~~~~ 461 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-D--KNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKI----IATTHYKELKALMYNREG 461 (782)
T ss_pred hHHHHHHHHHHHHHHhC-C--cCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEE----EEECChHHHHHHHhcCCC
Confidence 2233 44444444444 5 89999999994443333 3333345677777778888 999999887766555443
Q ss_pred E
Q 030541 156 C 156 (175)
Q Consensus 156 ~ 156 (175)
+
T Consensus 462 v 462 (782)
T PRK00409 462 V 462 (782)
T ss_pred e
Confidence 3
No 431
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.12 E-value=3.4e-10 Score=89.90 Aligned_cols=139 Identities=35% Similarity=0.598 Sum_probs=107.2
Q ss_pred EEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHHHHHH
Q 030541 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 83 (175)
++.++|.-||||||++.-|.+.+....--.++-+.||.-.++.|...++.++.+...+++++++++++.........+.-
T Consensus 21 ~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF~t 100 (366)
T KOG1532|consen 21 IILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLFAT 100 (366)
T ss_pred EEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHHHHH
Confidence 78899999999999999999988766555788888888778888888899999999999999999999876665555554
Q ss_pred HHHHH--HHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchh
Q 030541 84 NLDDW--LAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCI 145 (175)
Q Consensus 84 ~~~~~--l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~ 145 (175)
+.... +...... +-+..++|-|++.+++++...-.-+...++...-|| +++++.|-+-.
T Consensus 101 k~dqv~~~iek~~~--~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptv-v~YvvDt~rs~ 161 (366)
T KOG1532|consen 101 KFDQVIELIEKRAE--EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTV-VVYVVDTPRST 161 (366)
T ss_pred HHHHHHHHHHHhhc--ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeE-EEEEecCCcCC
Confidence 44322 2223334 567999999999999987776555677787777776 55577665433
No 432
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=99.11 E-value=5.6e-10 Score=84.79 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=34.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEee
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
+|+.++|+||||||||||+++|+|+++|+.|.+.+.+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIED 60 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence 4889999999999999999999999999999998854
No 433
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.09 E-value=2.7e-10 Score=88.05 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhccCCCCEEEEeCCC-----cccccccchhHHHHHHHHH
Q 030541 83 DNLDDWLAEELDNYLDDDYLVFDCPG-----QIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 83 ~~~~~~l~~~l~~~~~p~lliLDEP~-----~~~~~~~~~~~~~~l~~l~ 127 (175)
+++..++++.+.. +|+++++|||+ ..........+.+++++++
T Consensus 157 ~~~f~~ia~~l~~--~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 157 EKPFLWLARRLTN--DPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHhh--cccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3455788999999 99999999996 5555555556666777664
No 434
>PRK13768 GTPase; Provisional
Probab=99.08 E-value=4.2e-09 Score=83.83 Aligned_cols=138 Identities=38% Similarity=0.659 Sum_probs=90.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (175)
|..++.+.|+.||||||++..++..+....-.+.+-+.++......+.+..+..+.+...+++...++++........+.
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~ 80 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDL 80 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHH
Confidence 34578999999999999999999877653334777667776655566666677777778888888777666533333222
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeeh
Q 030541 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~s 141 (175)
..... .++...+.. .+++++++|=|++......+.....+++.+.... +-+++++++.
T Consensus 81 ~~~~~-~~l~~~l~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~-~~~ii~liD~ 138 (253)
T PRK13768 81 LLTKA-DEIKEEIES-LDADYVLVDTPGQMELFAFRESGRKLVERLSGSS-KSVVVFLIDA 138 (253)
T ss_pred HHHHH-HHHHHHHHh-cCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcC-CeEEEEEech
Confidence 22333 333333332 2679999999987776665555555666665433 3445556655
No 435
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.05 E-value=1.5e-10 Score=92.90 Aligned_cols=71 Identities=13% Similarity=-0.039 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhc-------cCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCC---c
Q 030541 83 DNLDDWLAEELDN-------YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLP---P 152 (175)
Q Consensus 83 ~~~~~~l~~~l~~-------~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~---~ 152 (175)
++++..++++++. ..+|+++++|||....+....+.+.+.++++ + .+ ++++|+..++..++ +
T Consensus 188 q~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~-q~----ii~~~~~~~~~~~~~~~~ 259 (270)
T cd03242 188 QQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---V-QT----FVTTTDLADFDALWLRRA 259 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---C-CE----EEEeCCchhccchhccCc
Confidence 6666777776641 2399999999995554454444444444432 3 45 67777778888877 5
Q ss_pred ceeEeccch
Q 030541 153 CIVCFCCTH 161 (175)
Q Consensus 153 ~~~~~~~~~ 161 (175)
+++.++.|+
T Consensus 260 ~i~~l~~g~ 268 (270)
T cd03242 260 QIFRVDAGT 268 (270)
T ss_pred cEEEEeCcE
Confidence 677776654
No 436
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.03 E-value=1.9e-09 Score=96.04 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhhc-cCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCccee
Q 030541 83 DNLDDWLAEELDN-YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIV 155 (175)
Q Consensus 83 ~~~~~~l~~~l~~-~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~ 155 (175)
+.||.-||..|.. -...-++|||||+...=+.....+.++|.++..+|.|| +++-|+++.+ +-+|-++
T Consensus 827 EaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTV----iVIEHNLdVI-k~AD~II 895 (935)
T COG0178 827 EAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTV----IVIEHNLDVI-KTADWII 895 (935)
T ss_pred HHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEE----EEEecccceE-eecCEEE
Confidence 7788888888776 12347999999944433444446777888888999999 9999998855 6667443
No 437
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.03 E-value=5.3e-10 Score=84.16 Aligned_cols=59 Identities=19% Similarity=0.112 Sum_probs=43.3
Q ss_pred CCCEEEEeCCCcccc---cccchhHHHHHHHHHhCCCcEEEEeeeehhchhh---------hhcCCcceeEeccc
Q 030541 98 DDDYLVFDCPGQIEL---FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIR---------FRTLPPCIVCFCCT 160 (175)
Q Consensus 98 ~p~lliLDEP~~~~~---~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~---------~~~~~~~~~~~~~~ 160 (175)
+|+++++|||+.... ......+..+++.+++.|.|+ ++++|.... +..++|.++.+...
T Consensus 95 ~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tv----i~v~~~~~~~~~~~~~~~~~~~aD~ii~l~~~ 165 (187)
T cd01124 95 KAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTT----LLTSEQSGLEGTGFGGGDVEYLVDGVIRLRLD 165 (187)
T ss_pred CCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEE----EEEeccccCCCcccCcCceeEeeeEEEEEEEE
Confidence 899999999933322 223345566777888789999 888998765 67888888888744
No 438
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.97 E-value=4.8e-10 Score=95.52 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=34.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccc-eEEEeecCc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G-~I~i~g~~~ 40 (175)
+||+++|+||||||||||++ +|+.+|++| +|.++|.+.
T Consensus 31 ~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~ 69 (504)
T TIGR03238 31 SSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHS 69 (504)
T ss_pred CCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEEC
Confidence 59999999999999999999 788888888 799999765
No 439
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.96 E-value=8.2e-10 Score=76.60 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=31.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
+|++++|+||||||||||++++. +|++.+.|.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di 47 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI------KRKHRLVGDDN 47 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeH
Confidence 38999999999999999999986 88999999875
No 440
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.95 E-value=1.5e-09 Score=99.76 Aligned_cols=99 Identities=14% Similarity=0.004 Sum_probs=74.8
Q ss_pred HHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCC--CEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEee
Q 030541 62 VMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDD--DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (175)
Q Consensus 62 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p--~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l 138 (175)
.++.++++.. .......-+..++|+..|++++.. +| ++++||||+........+.+.++|++++++|.|| +
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~--~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TV----I 545 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGS--GLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTL----I 545 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhh--CCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEE----E
Confidence 4455555422 222222223348999999999998 76 9999999977766777788888999998889999 9
Q ss_pred eehhchhhhhcCCcceeEe------ccchhhHHhh
Q 030541 139 LDSQVCIRFRTLPPCIVCF------CCTHTVVQRA 167 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~------~~~~~~~~~~ 167 (175)
+++|+++++. .+|+++.| ..|..+.+++
T Consensus 546 vVeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~ 579 (943)
T PRK00349 546 VVEHDEDTIR-AADYIVDIGPGAGVHGGEVVASGT 579 (943)
T ss_pred EEeCCHHHHH-hCCEEEEeccccCCCCCEEeeccC
Confidence 9999999986 69999999 6666665544
No 441
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.93 E-value=1.4e-09 Score=100.88 Aligned_cols=163 Identities=16% Similarity=0.116 Sum_probs=102.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc---ccceEEEeecCccc----ccCCCC-------ccCCccccccH-------
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDPAA----ENFDYP-------VAMDIRELISL------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~---~~G~I~i~g~~~~~----~~~~~~-------~~~~~~~~~~~------- 59 (175)
.|+.+.++||.|||||||+++++|-... ..|+|+++|.+... ....|. +.+++++.+..
T Consensus 140 pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~ 219 (1391)
T KOG0065|consen 140 PGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGP 219 (1391)
T ss_pred CCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCC
Confidence 3899999999999999999999998752 35799999987432 111121 22333333321
Q ss_pred -----------------HHHHHHhCCCCCCchhh-----hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccch
Q 030541 60 -----------------EDVMEELGLGPNGGLIY-----CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVP 117 (175)
Q Consensus 60 -----------------~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~ 117 (175)
+.+++.+++..-..... +.-+..++.|..++..+.. .++++.+||+++..+....-
T Consensus 220 ~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~--~~~~~~~De~t~GLDSsTal 297 (1391)
T KOG0065|consen 220 GSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVG--PASILFWDEITRGLDSSTAF 297 (1391)
T ss_pred ccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeec--CcceeeeecccccccHHHHH
Confidence 12334444432111111 0111125555566666666 99999999996555554444
Q ss_pred hHHHHHHHHHh-CCCcEEEEeeeehhchhhhhcCCcceeEeccchhhHHhhh
Q 030541 118 VLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 118 ~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
.+.+.++++.. -+.|+++ -+.+-..++-+..|.+.+|..|..++++.+
T Consensus 298 ~iik~lr~~a~~~~~t~~v---si~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~ 346 (1391)
T KOG0065|consen 298 QIIKALRQLAHITGATALV---SILQPSPEIYDLFDDVILLSEGYQIYQGPR 346 (1391)
T ss_pred HHHHHHHHHHhhhcceEEE---EeccCChHHHHhhhheeeeeccceEEeccH
Confidence 55567777754 4667722 234455677788899999999999998764
No 442
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.92 E-value=2.2e-09 Score=98.53 Aligned_cols=81 Identities=14% Similarity=0.023 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhhccCCC--CEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEe
Q 030541 80 HLEDNLDDWLAEELDNYLDD--DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p--~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
+..++||..|++++.. +| +++|||||+........+.+.++|++++++|.|| ++++|+++++. .||+++.|
T Consensus 489 SGGE~QRv~LA~aL~~--~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TV----IvVeHd~~~i~-~aD~vi~L 561 (924)
T TIGR00630 489 SGGEAQRIRLATQIGS--GLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTV----IVVEHDEETIR-AADYVIDI 561 (924)
T ss_pred CHHHHHHHHHHHHHhh--CCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEE----EEEECCHHHHh-hCCEEEEe
Confidence 3448999999999998 75 8999999977766777778888999998889999 99999999886 89999999
Q ss_pred ------ccchhhHHhh
Q 030541 158 ------CCTHTVVQRA 167 (175)
Q Consensus 158 ------~~~~~~~~~~ 167 (175)
..|..+.+++
T Consensus 562 gpgaG~~~G~Iv~~g~ 577 (924)
T TIGR00630 562 GPGAGIHGGEVVASGT 577 (924)
T ss_pred cccccCCCCEEeeccC
Confidence 5666555443
No 443
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.89 E-value=1.3e-08 Score=84.31 Aligned_cols=122 Identities=18% Similarity=0.115 Sum_probs=69.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCc-cccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHHH
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~-~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (175)
+..+.|.||+||||||+++++.+.++ +..+.|.....++... .+ .....+. ....+...
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~--~~~~~i~------q~evg~~~-------- 181 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HR--NKRSLIN------QREVGLDT-------- 181 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----cc--CccceEE------ccccCCCC--------
Confidence 56899999999999999999999766 4467776654432211 00 0000000 00111100
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEecc
Q 030541 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
.-....++.++.. +|+++++||+.-.+... ..++ ....|.+| +.+.|-.. +....+|+.-+..
T Consensus 182 --~~~~~~l~~~lr~--~pd~i~vgEird~~~~~------~~l~-aa~tGh~v----~~T~Ha~~-~~~~~~Rl~~~~~ 244 (343)
T TIGR01420 182 --LSFANALRAALRE--DPDVILIGEMRDLETVE------LALT-AAETGHLV----FGTLHTNS-AAQTIERIIDVFP 244 (343)
T ss_pred --cCHHHHHHHhhcc--CCCEEEEeCCCCHHHHH------HHHH-HHHcCCcE----EEEEcCCC-HHHHHHHHHHhcc
Confidence 1122455667888 99999999993222121 1333 45678888 77777643 3344566654444
No 444
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.89 E-value=2.1e-08 Score=78.62 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=26.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHh-ccCccccceEEEee
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~-gl~~~~~G~I~i~g 37 (175)
+|.++.|.|++|||||||...++ +..+ ..+.+.+..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~ 60 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVIT 60 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEE
Confidence 48899999999999999999874 3333 344555544
No 445
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.89 E-value=1e-08 Score=71.95 Aligned_cols=30 Identities=37% Similarity=0.559 Sum_probs=26.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcccc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVR 30 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~ 30 (175)
+|..+.|.||+|+||||+++.++..+....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 367899999999999999999999987654
No 446
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.81 E-value=2.7e-08 Score=81.72 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=36.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
+|++++++|||||||||++..|++.+.+..++|.+.+.|.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 3789999999999999999999999998888999988775
No 447
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.78 E-value=7.4e-09 Score=78.52 Aligned_cols=35 Identities=29% Similarity=0.520 Sum_probs=29.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeec
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~ 38 (175)
||++++|+||||||||||++.|++...+ .+.+.+.
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~ 35 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHR 35 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCE
Confidence 7999999999999999999999999875 3555443
No 448
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.76 E-value=1.3e-08 Score=76.82 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=31.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
.|++++++|+|||||||++++|++++.+ +.++|.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~ 37 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDL 37 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCccc
Confidence 4999999999999999999999999887 57777653
No 449
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.75 E-value=6.9e-09 Score=81.26 Aligned_cols=33 Identities=24% Similarity=0.187 Sum_probs=30.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCccccceEE
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH 34 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~ 34 (175)
..++||.||||||||||+++|++++++++|.+.
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~ 65 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELPA 65 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhccCCce
Confidence 468999999999999999999999999999843
No 450
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.73 E-value=9.7e-09 Score=79.16 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=26.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+|++++|+||||||||||++.|++++++
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4899999999999999999999999876
No 451
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.73 E-value=9.7e-09 Score=83.17 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=32.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhccCc--cccceEEEeecC
Q 030541 3 YAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLD 39 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~--~~~G~I~i~g~~ 39 (175)
.++||.|+||||||||+++|.+++. |.+|+|.+.+.|
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D 101 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTD 101 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecc
Confidence 4899999999999999999999997 778888775543
No 452
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.73 E-value=1.4e-08 Score=86.24 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=35.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecC
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~ 39 (175)
+|+.++|+|+||+|||||+++|++..+++.|.|.+.|..
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGer 193 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGER 193 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCC
Confidence 589999999999999999999999999999988776654
No 453
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.72 E-value=1.2e-07 Score=75.23 Aligned_cols=68 Identities=9% Similarity=-0.016 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhccCCCCEEEEeCCCcccc-cccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhcCCcceeEeccchh
Q 030541 84 NLDDWLAEELDNYLDDDYLVFDCPGQIEL-FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHT 162 (175)
Q Consensus 84 ~~~~~l~~~l~~~~~p~lliLDEP~~~~~-~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~ 162 (175)
+++...++.+.+ ++++.+| |+.... -+..+-. ++.+++..+.|. ++.||.+..... .+.|.++.++..
T Consensus 143 ~q~~~~Ar~~~~--~gsIt~l--~T~~~d~~~~~~~~--i~~~~~~~~~~~----ivls~~la~~~~-~paI~vl~s~sr 211 (249)
T cd01128 143 KRFFGAARNIEE--GGSLTII--ATALVDTGSRMDDV--IFEEFKGTGNME----LVLDRRLAERRI-FPAIDILKSGTR 211 (249)
T ss_pred HHHHHHhcCCCC--CCceEEe--eeheecCCCcccch--HHHHHhcCCCcE----EEEchHHhhCCC-CCeEEEcCCCCc
Confidence 555666777777 9999999 732222 1222211 255665567889 999999998854 477888877764
No 454
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.71 E-value=1.1e-08 Score=78.39 Aligned_cols=27 Identities=33% Similarity=0.539 Sum_probs=25.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+|++++|+||+|||||||+++|++..+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 499999999999999999999999975
No 455
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.69 E-value=3.8e-08 Score=75.67 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=0.0
Q ss_pred EEEEECCCCCCHHHHHHHHhccC
Q 030541 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.+|+|+|||||||++++|..+.
T Consensus 1 i~viiG~N~sGKS~il~ai~~~~ 23 (303)
T PF13304_consen 1 INVIIGPNGSGKSNILEAIYFLF 23 (303)
T ss_dssp -----------------------
T ss_pred CCccccccccccccccccccccc
Confidence 46899999999999999998774
No 456
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.68 E-value=9.9e-08 Score=87.52 Aligned_cols=51 Identities=10% Similarity=0.238 Sum_probs=36.2
Q ss_pred CCCCEEEEeCCCc-ccccccchhHHHHHHHHHhC-CCcEEEEeeeehhchhhhhcCCc
Q 030541 97 LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPP 152 (175)
Q Consensus 97 ~~p~lliLDEP~~-~~~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~ 152 (175)
.++.++|+|||++ ....++....+.+++.+.+. +.++ +++||+ .++..+++
T Consensus 685 t~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~----l~aTH~-~el~~l~~ 737 (854)
T PRK05399 685 TERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKT----LFATHY-HELTELEE 737 (854)
T ss_pred CCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceE----EEEech-HHHHHHhh
Confidence 3889999999933 22334555666788888766 5778 999999 55555554
No 457
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.67 E-value=2.9e-07 Score=84.24 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=48.2
Q ss_pred CCCCEEEEeCCCccc-ccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhh---------cCCcceeEeccchh
Q 030541 97 LDDDYLVFDCPGQIE-LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFR---------TLPPCIVCFCCTHT 162 (175)
Q Consensus 97 ~~p~lliLDEP~~~~-~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~---------~~~~~~~~~~~~~~ 162 (175)
.+|+++++|||.... .....+.+.+.++.++++|.++ +++||+++++. +.|++.+++.++..
T Consensus 651 ~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~v----il~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a 722 (818)
T PRK13830 651 GAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAV----VLATQSISDAERSGIIDVLKESCPTKICLPNGAA 722 (818)
T ss_pred CCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEE----EEEeCCHHHHhcCchHHHHHhcCCeEEECCCccc
Confidence 399999999992222 2334556777888888889899 99999999986 57888888877664
No 458
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.66 E-value=5.3e-08 Score=83.09 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=35.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecC
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~ 39 (175)
+|++++|+|+||+|||||+++|++..+++.|.+...|..
T Consensus 162 ~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r 200 (440)
T TIGR01026 162 KGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGER 200 (440)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeec
Confidence 599999999999999999999999999998877776654
No 459
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.65 E-value=3.1e-08 Score=77.23 Aligned_cols=38 Identities=18% Similarity=0.386 Sum_probs=27.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHh-ccCccccceEEEeec
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVNL 38 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~-gl~~~~~G~I~i~g~ 38 (175)
+|+++.|.|++|||||||+..++ ...++..+.+++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 48999999999999999998654 223444455666543
No 460
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.65 E-value=2.7e-08 Score=62.24 Aligned_cols=29 Identities=34% Similarity=0.448 Sum_probs=24.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCcccc
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVR 30 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~ 30 (175)
|+++.|.|||||||||++.++.=++-+..
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 57899999999999999999987665543
No 461
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.58 E-value=3.9e-08 Score=76.76 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=27.6
Q ss_pred EEEEECCCCCCHHHHHHHHhccCcc--ccceEEE
Q 030541 4 AQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHI 35 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~--~~G~I~i 35 (175)
++||.|+||||||||++.|++++.+ .++++.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v 34 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL 34 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence 5899999999999999999999875 4566665
No 462
>PRK04296 thymidine kinase; Provisional
Probab=98.56 E-value=2.5e-07 Score=70.56 Aligned_cols=36 Identities=22% Similarity=0.197 Sum_probs=26.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEe
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~ 36 (175)
||.++.+.||.||||||++.-++--.......+.+.
T Consensus 1 ~g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 1 MAKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 689999999999999998866655443333345544
No 463
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.55 E-value=7.7e-08 Score=72.21 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=28.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCccccceEEE
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
|++++|+||||||||||++.|++.+++. |.+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~ 33 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHF 33 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEE
Confidence 6899999999999999999999987654 55544
No 464
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.55 E-value=3.4e-07 Score=78.60 Aligned_cols=137 Identities=15% Similarity=0.165 Sum_probs=73.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceE-EEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHH
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTM-HIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I-~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+|+++.|.|++|+|||||+..++.......+.+ ++.+.+...+ + ..-.+.+++...........
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~q-i--------------~~ra~rlg~~~~~l~~~~e~ 157 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQ-I--------------KMRAIRLGLPEPNLYVLSET 157 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHH-H--------------HHHHHHcCCChHHeEEcCCC
Confidence 489999999999999999999987665544554 5555542211 0 00011111111000000000
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCcc---cccc---c---chhHHHHHHHH-HhCCCcEEEEeeeehhchhh---
Q 030541 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQI---ELFT---H---VPVLRNFVDHL-KSRNFNVCAVYLLDSQVCIR--- 146 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~---~~~~---~---~~~~~~~l~~l-~~~g~tvli~~l~~sH~~~~--- 146 (175)
.+ +.. ++..-.. +|+++++|.-... ++.. . ...+...|.++ ++.|.|+ ++++|...+
T Consensus 158 ~~-~~I---~~~i~~~--~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTv----llt~hvtkeg~~ 227 (454)
T TIGR00416 158 NW-EQI---CANIEEE--NPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAI----FIVGHVTKEGSI 227 (454)
T ss_pred CH-HHH---HHHHHhc--CCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEE----EEEeccccCCcc
Confidence 01 111 1111124 8999999987211 1000 0 11122234444 5679999 888887665
Q ss_pred -----hhcCCcceeEeccchh
Q 030541 147 -----FRTLPPCIVCFCCTHT 162 (175)
Q Consensus 147 -----~~~~~~~~~~~~~~~~ 162 (175)
++.++|.+++++....
T Consensus 228 aG~~~le~lvD~VI~Le~~~~ 248 (454)
T TIGR00416 228 AGPKVLEHMVDTVLYFEGDRD 248 (454)
T ss_pred CCcccEeeeceEEEEEeccCC
Confidence 6778899998886543
No 465
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.55 E-value=6.9e-08 Score=83.06 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=30.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccce--EEEee
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRT--MHIVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~--I~i~g 37 (175)
+|.+++++|||||||||++..|++.+....|. |.+-.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~ 293 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLT 293 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 37899999999999999999999998777664 54433
No 466
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.53 E-value=1.4e-07 Score=82.66 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=32.6
Q ss_pred EEEEECCCCCCHHHHHHHHhccCccccceEEEeecCc
Q 030541 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
++||.||||||||||++.|++++ |..|.|.++|+..
T Consensus 67 IIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~ 102 (656)
T PLN02318 67 LVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYND 102 (656)
T ss_pred EEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceec
Confidence 79999999999999999999997 5689999998753
No 467
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.52 E-value=3.4e-07 Score=86.59 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=30.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccC-ccccceEEEee
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHC-ETVRRTMHIVN 37 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~-~~~~G~I~i~g 37 (175)
++++||+|++|+|||||++++++.+ ...+|.+++++
T Consensus 207 ~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 207 VRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 6799999999999999999996654 45689888865
No 468
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.51 E-value=9.3e-08 Score=72.99 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=26.8
Q ss_pred EEEEECCCCCCHHHHHHHHhccCccccceEEEeec
Q 030541 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~ 38 (175)
++||.||||||||||+++|++++ ..|.+.+.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~ 33 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQ 33 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEe
Confidence 58999999999999999999998 3455555443
No 469
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.51 E-value=1.2e-07 Score=80.87 Aligned_cols=38 Identities=24% Similarity=0.181 Sum_probs=35.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeec
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~ 38 (175)
+|++++|+|+||||||||+++|+++.+|+.|.+.+.|.
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGe 201 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGE 201 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeeccc
Confidence 59999999999999999999999999999998888653
No 470
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.50 E-value=1.4e-06 Score=79.61 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=36.3
Q ss_pred CCCCEEEEeCCCcc-cccccchhHHHHHHHHHhCCCcEEEEeeeehhchhhhhc
Q 030541 97 LDDDYLVFDCPGQI-ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRT 149 (175)
Q Consensus 97 ~~p~lliLDEP~~~-~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~ 149 (175)
.+|.++++|||-.. +.....+.+.+.++.+++.|..+ +++||+++++.+
T Consensus 641 g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~----i~~TQ~~~d~~~ 690 (800)
T PRK13898 641 GTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFV----IFATQSVEDASK 690 (800)
T ss_pred CCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEE----EEEeCCHHHHHh
Confidence 38999999999211 11223446677888888888888 999999988765
No 471
>PLN02796 D-glycerate 3-kinase
Probab=98.49 E-value=1e-07 Score=78.63 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=32.3
Q ss_pred EEEEECCCCCCHHHHHHHHhccCccc---cceEEEeecCc
Q 030541 4 AQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDP 40 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~---~G~I~i~g~~~ 40 (175)
++||.|++|||||||++.|.+++++. .|.|.+++...
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 39999999999999999999999874 57888888653
No 472
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.49 E-value=4.5e-07 Score=64.17 Aligned_cols=27 Identities=26% Similarity=0.408 Sum_probs=24.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCcc
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+..+.|.||+|+||||+++.++.....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~ 45 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFR 45 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 567899999999999999999998763
No 473
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.49 E-value=1.4e-07 Score=70.74 Aligned_cols=27 Identities=33% Similarity=0.554 Sum_probs=24.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCcc
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
|++++|+||||||||||++.|++..+.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcc
Confidence 789999999999999999999997654
No 474
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.47 E-value=6.2e-07 Score=74.79 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=24.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+|..++|+||+||||||+++++++.+.
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999999884
No 475
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.47 E-value=1.3e-07 Score=76.05 Aligned_cols=32 Identities=28% Similarity=0.215 Sum_probs=28.1
Q ss_pred EEEEECCCCCCHHHHHHHHhccCccccceEEE
Q 030541 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
++||.|+||||||||++.|++++++..|.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~ 32 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVIC 32 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEE
Confidence 58999999999999999999999987775443
No 476
>PRK13764 ATPase; Provisional
Probab=98.46 E-value=1.3e-06 Score=77.15 Aligned_cols=120 Identities=15% Similarity=0.137 Sum_probs=71.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHHHHH
Q 030541 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (175)
.-+.+.||.||||||++++++..+.. .|.+.+-=.++.+-. +.. .. .++ .... . ...
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~-~~riV~TiEDp~El~--~~~--~i-~q~-----------~~~~---~---~~~ 314 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYAD-MGKIVKTMESPRDLQ--VPP--EI-TQY-----------SKLE---G---SME 314 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhh-CCCEEEEECCCcccc--CCC--cc-eEE-----------eecc---c---cHH
Confidence 45789999999999999999999864 554432111221111 100 00 000 0000 0 000
Q ss_pred HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeeehh---------------chhhh
Q 030541 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ---------------VCIRF 147 (175)
Q Consensus 83 ~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH---------------~~~~~ 147 (175)
. +....|.. +|+++++||.-..+.+. ++..++..|..+ +-+.| ++..+
T Consensus 315 ~----~~~~lLR~--rPD~IivGEiRd~Et~~-------~~~~l~~ag~Gv----igTlHA~sa~~Ai~Rl~~~v~lg~i 377 (602)
T PRK13764 315 E----TADILLLV--RPDYTIYDEMRKTEDFK-------IFADMRLAGVGM----VGVVHATRPIDAIQRFIGRVELGMI 377 (602)
T ss_pred H----HHHHHHhh--CCCEEEECCCCCHHHHH-------HHHHHHHcCCeE----EEEECCCCHHHHHHHHHhhhhhchH
Confidence 1 11112556 99999999994444454 666666566666 44556 77778
Q ss_pred hcCCcceeEeccchh
Q 030541 148 RTLPPCIVCFCCTHT 162 (175)
Q Consensus 148 ~~~~~~~~~~~~~~~ 162 (175)
...+|+++++..+..
T Consensus 378 ~~iID~IV~I~~G~I 392 (602)
T PRK13764 378 PQIVDTVIFIEDGEV 392 (602)
T ss_pred HHhhcEEEEEeCCEE
Confidence 888999999988876
No 477
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.42 E-value=3.4e-07 Score=75.32 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=35.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecC
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~ 39 (175)
+|++++|+|+||+|||||+++|+|...++.|.+...|.+
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 599999999999999999999999999998888777754
No 478
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.42 E-value=2.9e-06 Score=66.88 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=29.6
Q ss_pred CCCEEEEeCCCcc-cccccchhHHHHHHHHHhC-CCcEEEEeeeehhchhhh
Q 030541 98 DDDYLVFDCPGQI-ELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRF 147 (175)
Q Consensus 98 ~p~lliLDEP~~~-~~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~ 147 (175)
+..++++||+++. ...++......+++.+.++ +..+ +++||..+..
T Consensus 122 ~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~----i~~TH~~~l~ 169 (235)
T PF00488_consen 122 EKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFV----IIATHFHELA 169 (235)
T ss_dssp TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EE----EEEES-GGGG
T ss_pred cceeeecccccCCCChhHHHHHHHHHHHHHHHhccccE----EEEeccchhH
Confidence 6779999999332 2233344455678888764 6666 8999988653
No 479
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.41 E-value=3.6e-07 Score=70.40 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=28.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEee
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
++.+++|.|+||||||||++.|++.++ .+.+.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~ 39 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIP 39 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEe
Confidence 367999999999999999999999883 34454433
No 480
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.40 E-value=1.8e-06 Score=67.99 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=20.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHh
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLY 23 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~ 23 (175)
|++..|+||.|+|||||+-.++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la 22 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLA 22 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHH
Confidence 7888999999999999998886
No 481
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.39 E-value=1.8e-07 Score=70.35 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=29.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHh---ccCccccceEEE
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLY---RHCETVRRTMHI 35 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~---gl~~~~~G~I~i 35 (175)
..+++++|++||||||+++.|+ |+..++.|++..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~ 39 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLR 39 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHH
Confidence 4689999999999999999999 887787777643
No 482
>PRK01889 GTPase RsgA; Reviewed
Probab=98.38 E-value=3.2e-07 Score=76.45 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=35.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeec
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~ 38 (175)
+|++++++|+||+|||||++.|+|..++..|+|.+++.
T Consensus 194 ~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~ 231 (356)
T PRK01889 194 GGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDS 231 (356)
T ss_pred cCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCC
Confidence 38899999999999999999999999999999998754
No 483
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.37 E-value=4.3e-06 Score=66.40 Aligned_cols=88 Identities=26% Similarity=0.349 Sum_probs=48.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHHHHH
Q 030541 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (175)
.+++|.||||||||||++.++...++. .+.+.... ....+..+. ...+.+.+++..... ......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~--~~~~~~~~--------~~~~~~~~~--l~~i~~~lG~~~~~~---~~~~~~ 108 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQE--RVVAAKLV--------NTRVDAEDL--LRMVAADFGLETEGR---DKAALL 108 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCC--CeEEeeee--------CCCCCHHHH--HHHHHHHcCCCCCCC---CHHHHH
Confidence 378999999999999999999987753 33222110 001122222 234556666654321 111122
Q ss_pred HHHHHHHHH-HhhccCCCCEEEEeCC
Q 030541 83 DNLDDWLAE-ELDNYLDDDYLVFDCP 107 (175)
Q Consensus 83 ~~~~~~l~~-~l~~~~~p~lliLDEP 107 (175)
.+....+.. .... ++.++++||.
T Consensus 109 ~~l~~~l~~~~~~~--~~~vliiDe~ 132 (269)
T TIGR03015 109 RELEDFLIEQFAAG--KRALLVVDEA 132 (269)
T ss_pred HHHHHHHHHHHhCC--CCeEEEEECc
Confidence 222233332 3344 6789999997
No 484
>PRK00098 GTPase RsgA; Reviewed
Probab=98.37 E-value=3.6e-07 Score=74.39 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=32.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEE
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
+|.+++++|+||+|||||++.|+|...+..|+|..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~ 197 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE 197 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence 47899999999999999999999999999999986
No 485
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.37 E-value=1.3e-06 Score=73.15 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCcc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+|++++++||||+||||++..|++....
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~ 163 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVM 163 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3889999999999999999999987543
No 486
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.37 E-value=4.1e-07 Score=77.12 Aligned_cols=40 Identities=25% Similarity=0.229 Sum_probs=36.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
+|+.++|+|+||+|||||+++|++..+|+.|.|.+.|...
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~ 178 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERG 178 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeec
Confidence 5899999999999999999999999999999988887653
No 487
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.36 E-value=2e-06 Score=77.49 Aligned_cols=38 Identities=26% Similarity=0.507 Sum_probs=31.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCccccc--eEEEeecC
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLD 39 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G--~I~i~g~~ 39 (175)
|++++++||||+||||++..|++.+....| +|.+...|
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D 224 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD 224 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc
Confidence 789999999999999999999999876666 56655444
No 488
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.36 E-value=1.5e-06 Score=72.82 Aligned_cols=38 Identities=21% Similarity=0.134 Sum_probs=30.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEE-eec
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI-VNL 38 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i-~g~ 38 (175)
+|+++.|.|++|+|||||+..++.......+.+.+ .+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 48999999999999999999998877665566644 444
No 489
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.35 E-value=3.5e-06 Score=72.97 Aligned_cols=146 Identities=11% Similarity=0.131 Sum_probs=73.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHH--hccCccccceEEEeecCccc------ccCCCCccC-CccccccHHHHHHHhCCCCC
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSL--YRHCETVRRTMHIVNLDPAA------ENFDYPVAM-DIRELISLEDVMEELGLGPN 71 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i--~gl~~~~~G~I~i~g~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 71 (175)
+|.++.|.|++|||||||..-. .|..+..+.-+++....... ...+|...- .....+.. +.....
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~------~~~~~~ 93 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFI------LDASPD 93 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEE------EecCch
Confidence 4889999999999999999876 45555444556665433211 122222100 00000000 000000
Q ss_pred C--chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEe--CC---CcccccccchhHHHHHHHHHhCCCcEEEEeeeehhch
Q 030541 72 G--GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFD--CP---GQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVC 144 (175)
Q Consensus 72 ~--~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLD--EP---~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~ 144 (175)
. ........+.... ..+...+.. .+++.+++| -. ........+..+.++++.+++.|.|+ ++++|+.
T Consensus 94 ~~~~~~~~~~~l~~~l-~~i~~~ls~-g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~Li~~L~~~g~Tv----LLtsh~~ 167 (484)
T TIGR02655 94 PEGQDVVGGFDLSALI-ERINYAIRK-YKAKRVSIDSVTAVFQQYDAVSVVRREIFRLVARLKQIGVTT----VMTTERI 167 (484)
T ss_pred hccccccccCCHHHHH-HHHHHHHHH-hCCcEEEEeehhHhhhhcCchHHHHHHHHHHHHHHHHCCCEE----EEEecCc
Confidence 0 0000000011111 111122221 267788888 22 11111223345566888888889999 9999987
Q ss_pred hh--------h-hcCCcceeEec
Q 030541 145 IR--------F-RTLPPCIVCFC 158 (175)
Q Consensus 145 ~~--------~-~~~~~~~~~~~ 158 (175)
++ + +.++|.++.|.
T Consensus 168 ~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 168 EEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ccccccccCCceeEeeeeEEEEE
Confidence 64 2 56778888776
No 490
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.35 E-value=3.6e-07 Score=74.00 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=31.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCccccceEEE
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
|++++++|+||+|||||++.|.|...++.|++..
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~ 194 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISE 194 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhhccccceec
Confidence 5789999999999999999999999999999875
No 491
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.35 E-value=3.8e-07 Score=76.99 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=33.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhccCccc---cceEEEeecCc
Q 030541 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDP 40 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~---~G~I~i~g~~~ 40 (175)
-++||.|++|||||||++.|.+++++. .|.|.++++..
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYL 253 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYL 253 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccC
Confidence 379999999999999999999999765 68888888653
No 492
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.34 E-value=4.6e-07 Score=77.08 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=29.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceE
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTM 33 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I 33 (175)
+|++++|+|+||||||||+++|+|+.+++.+.+
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vi 186 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYTQADVVVV 186 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcccCCCeEEE
Confidence 599999999999999999999999998875433
No 493
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.34 E-value=4.8e-07 Score=69.28 Aligned_cols=41 Identities=24% Similarity=0.220 Sum_probs=33.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccc-cceEEEeecCcc
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPA 41 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~-~G~I~i~g~~~~ 41 (175)
+|.+++|+|+||||||||.+.|++.+.+. .|.+.++|.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 47899999999999999999999977654 457888876543
No 494
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.33 E-value=4.1e-07 Score=77.16 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccC
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+|++++++||||+||||+++.|++..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999999864
No 495
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=98.32 E-value=4.9e-06 Score=66.66 Aligned_cols=27 Identities=41% Similarity=0.420 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHhccCcc
Q 030541 2 GYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+..+.|.|++||||||+++.+...+++
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 357999999999999999988766654
No 496
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.32 E-value=5.7e-07 Score=76.49 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=35.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecC
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~ 39 (175)
+|+.++|+|+||+|||||+++|++..+++.|.+.+.|..
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 599999999999999999999999999999988777754
No 497
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=98.31 E-value=3.6e-06 Score=65.43 Aligned_cols=57 Identities=14% Similarity=0.133 Sum_probs=38.7
Q ss_pred CCCEEEEeCCCcc-----cccccchhHHHHHHHHHhCCCcEEEEeeeehhc---------hhhhhcCCcceeEec
Q 030541 98 DDDYLVFDCPGQI-----ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQV---------CIRFRTLPPCIVCFC 158 (175)
Q Consensus 98 ~p~lliLDEP~~~-----~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~---------~~~~~~~~~~~~~~~ 158 (175)
+++.+++|=.+.. +....+..+..+++.+++.|.|+ ++++|. ...++.+||.++.++
T Consensus 107 ~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tv----ll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 107 GASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTT----ILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred CCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEE----EEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 6889999954221 11112345666888888889999 888884 233677889888885
No 498
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.31 E-value=7.8e-07 Score=65.78 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=24.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcc----Cccccc
Q 030541 4 AQLVIGPAGSGKSTYCSSLYRH----CETVRR 31 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl----~~~~~G 31 (175)
.++++|+||||||||++.+.|. ..|+.|
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g 47 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASEDISHITPTQG 47 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcCCCcccCCCCC
Confidence 4899999999999999999997 446666
No 499
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.31 E-value=2.2e-05 Score=60.09 Aligned_cols=114 Identities=15% Similarity=0.240 Sum_probs=58.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhccCccccceEEEeecCcccccCCCCccCCccccccHHHHHHHhCCCCCCchhhhHHHHH
Q 030541 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (175)
.++.+.|+|||||||+.+.+..-.. ..|.+.++.-..+. +.+ ...+....- ............+
T Consensus 16 ~~~i~aG~~GsGKSt~~~~~~~~~~-~~~~v~i~~D~~r~----~~p--------~~~~~~~~~---~~~~~~~~~~~a~ 79 (199)
T PF06414_consen 16 TLIIIAGQPGSGKSTLARQLLEEFG-GGGIVVIDADEFRQ----FHP--------DYDELLKAD---PDEASELTQKEAS 79 (199)
T ss_dssp EEEEEES-TTSTTHHHHHHHHHHT--TT-SEEE-GGGGGG----GST--------THHHHHHHH---CCCTHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHhhhhcc-CCCeEEEehHHHHH----hcc--------chhhhhhhh---hhhhHHHHHHHHH
Confidence 3678889999999999998877654 45667776543322 111 012222211 1111111112222
Q ss_pred HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchhHHHHHHHHHhCCCcEEEEeeee
Q 030541 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (175)
Q Consensus 83 ~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~ 140 (175)
......+..++.+ ...+ ++|-+ +...+...++++.+++.|-.|.++++.+
T Consensus 80 ~~~~~~~~~a~~~--~~ni-i~E~t-----l~~~~~~~~~~~~~k~~GY~v~l~~v~~ 129 (199)
T PF06414_consen 80 RLAEKLIEYAIEN--RYNI-IFEGT-----LSNPSKLRKLIREAKAAGYKVELYYVAV 129 (199)
T ss_dssp HHHHHHHHHHHHC--T--E-EEE-------TTSSHHHHHHHHHHHCTT-EEEEEEE--
T ss_pred HHHHHHHHHHHHc--CCCE-EEecC-----CCChhHHHHHHHHHHcCCceEEEEEEEC
Confidence 3344455556666 5555 45888 6666666678888888888776654444
No 500
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.30 E-value=7.9e-07 Score=75.83 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=36.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHhccCccccceEEEeecC
Q 030541 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~ 39 (175)
+|++++|+|+||+|||||+++|++..+++.|.+.+.|..
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer 200 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGER 200 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccC
Confidence 599999999999999999999999999999988888764
Done!