Query 030546
Match_columns 175
No_of_seqs 129 out of 684
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 15:22:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04752 ChaC: ChaC-like prote 100.0 4.7E-66 1E-70 412.3 18.2 166 3-173 1-170 (178)
2 KOG3182 Predicted cation trans 100.0 4.1E-65 8.8E-70 405.7 16.8 166 1-171 8-175 (212)
3 COG3703 ChaC Uncharacterized p 100.0 3E-59 6.4E-64 371.2 18.2 160 2-172 11-173 (190)
4 PHA03014 hypothetical protein; 99.8 1.5E-17 3.3E-22 131.3 15.2 144 1-163 1-160 (163)
5 cd06661 GGCT_like GGCT-like do 99.7 1.2E-17 2.5E-22 119.1 8.7 92 5-117 1-99 (99)
6 KOG4059 Uncharacterized conser 99.2 2.1E-11 4.5E-16 95.2 4.7 135 3-158 24-166 (193)
7 PF06094 AIG2: AIG2-like famil 99.1 1.5E-09 3.3E-14 77.9 9.9 98 5-118 1-102 (102)
8 PF13772 AIG2_2: AIG2-like fam 99.0 6.7E-10 1.5E-14 78.1 6.0 80 61-157 1-83 (83)
9 COG2105 Uncharacterized conser 97.8 0.00025 5.3E-09 53.5 9.7 91 5-119 4-101 (120)
10 KOG4450 Uncharacterized conser 92.0 0.33 7.1E-06 38.2 4.7 84 4-100 8-102 (168)
11 KOG4311 Histidinol dehydrogena 62.5 13 0.00027 32.2 4.2 75 45-128 146-230 (359)
12 COG4762 Uncharacterized protei 53.0 7.3 0.00016 30.8 1.2 11 2-12 99-109 (168)
13 TIGR00290 MJ0570_dom MJ0570-re 51.6 60 0.0013 26.9 6.5 41 127-167 40-87 (223)
14 PF13772 AIG2_2: AIG2-like fam 38.1 24 0.00053 24.1 1.8 25 149-173 58-82 (83)
15 PRK10708 hypothetical protein; 37.3 44 0.00096 22.1 2.8 25 42-70 12-36 (62)
16 KOG2631 Class II aldolase/addu 37.1 27 0.00058 29.1 2.2 22 150-171 209-230 (238)
17 PRK02759 bifunctional phosphor 37.0 2.1E+02 0.0046 23.5 7.4 100 49-158 15-140 (203)
18 PLN02863 UDP-glucoronosyl/UDP- 34.9 50 0.0011 30.2 3.8 35 134-168 442-476 (477)
19 COG3904 Predicted periplasmic 33.9 18 0.00039 30.2 0.7 20 155-174 193-212 (245)
20 COG5452 Uncharacterized conser 32.8 60 0.0013 25.8 3.4 29 132-169 67-95 (180)
21 PF09286 Pro-kuma_activ: Pro-k 31.2 41 0.00089 25.2 2.3 44 117-170 37-80 (143)
22 PF10781 DSRB: Dextransucrase 30.9 66 0.0014 21.3 2.8 25 42-70 12-36 (62)
23 TIGR02716 C20_methyl_CrtF C-20 30.3 81 0.0017 26.5 4.1 32 129-167 22-53 (306)
24 COG1959 Predicted transcriptio 28.9 1E+02 0.0022 23.7 4.1 43 111-166 12-54 (150)
25 PF07107 WI12: Wound-induced p 27.0 42 0.00092 24.9 1.6 26 29-54 84-109 (109)
26 smart00460 TGc Transglutaminas 27.0 68 0.0015 20.1 2.5 22 147-168 6-27 (68)
27 PF11784 DUF3320: Protein of u 26.3 61 0.0013 20.5 2.1 21 128-148 24-44 (52)
28 PF13545 HTH_Crp_2: Crp-like h 25.9 1.1E+02 0.0023 19.8 3.3 30 131-167 29-58 (76)
29 PF02082 Rrf2: Transcriptional 25.0 96 0.0021 20.9 3.1 30 130-166 25-54 (83)
30 PF08480 Disaggr_assoc: Disagg 24.2 39 0.00085 27.6 1.1 9 2-10 18-26 (198)
31 PF13812 PPR_3: Pentatricopept 23.6 93 0.002 16.4 2.3 29 139-168 6-34 (34)
32 PF06577 DUF1134: Protein of u 22.7 1.6E+02 0.0035 23.3 4.2 43 27-88 65-107 (160)
33 PF15409 PH_8: Pleckstrin homo 21.7 41 0.00089 23.9 0.7 14 24-37 8-21 (89)
No 1
>PF04752 ChaC: ChaC-like protein; InterPro: IPR006840 The ChaC protein is thought to be associated with the putative ChaA Ca2+/H+ cation transport protein in Escherichia coli. Its function is not known. This family also includes homologues regions from several other bacterial and eukaryotic proteins.
Probab=100.00 E-value=4.7e-66 Score=412.34 Aligned_cols=166 Identities=47% Similarity=0.860 Sum_probs=154.8
Q ss_pred ceEEEecccccCCCCCCCeeeeeEEeceEEEEEeecccCCCCCCCCceEEEEEeCCCCeEEEEEEEeeCCcchHHHHHHH
Q 030546 3 FWVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEY 82 (175)
Q Consensus 3 ~wvFgYGSLmw~p~f~~~e~~~a~l~Gy~R~F~~~s~~~RGt~e~PG~v~tL~~~~g~~~~Gvay~v~~~~~~~~~~l~~ 82 (175)
+||||||||||||+|+|.++++|+|+||||+|||.|++|||||++||+|+||++++++.||||||+|++ +++++++++
T Consensus 1 ~WVFGYGSLiW~p~f~~~e~~~a~i~Gy~R~F~~~s~~hRGTpe~PGrvltL~~~~~~~c~Gvayrv~~--~~~~~~l~~ 78 (178)
T PF04752_consen 1 LWVFGYGSLIWNPGFPYAERRPAYIKGYHRRFCQGSTDHRGTPEQPGRVLTLDPGEEGSCWGVAYRVPE--EDAEEVLEY 78 (178)
T ss_pred CEEEEeccceeCCCCCccceEEEEecCcccceEeeccccCCCcCCCcceeeeeeCCCCEEEEEEEEecC--cCHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999888999999999995 677899999
Q ss_pred HHHHhh-cCCCceeEEEEec-CCCCCCceeEEEEEEEecCCCCCcCccCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHH
Q 030546 83 LERREC-EYDSKTLVDFYRE-GEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKA 160 (175)
Q Consensus 83 Ld~RE~-~~y~~~~v~v~~~-~~~~~~~~~~al~yv~~~~~~~~~~y~g~~~~~~~a~~I~~a~G~~G~n~eYl~~l~~~ 160 (175)
||.||| ++|.+++|++++. +....+..++|++||+++ +||+|+|++|++++|++|++|+|+||+|.|||++|+++
T Consensus 79 L~~RE~~~Gy~~~~v~~~~~~~~~~~~~~~~al~yv~~~---~n~~y~g~~~~~~~A~~Ia~a~G~~G~N~eYL~~l~~~ 155 (178)
T PF04752_consen 79 LDEREMIGGYTRHWVPFYPEVDTDSGPVIVEALVYVADP---DNPQYLGPLPLEEIARIIATASGPSGSNREYLFNLAEA 155 (178)
T ss_pred HhhcccccccceEEEEEEEeccCCCCceEEEEEEEEecC---CCccccCCCCHHHHHHHHhheECcCcCCHHHHHHHHHH
Confidence 999999 7899999999873 333445556899999999 99999999999999999999999999999999999999
Q ss_pred HHhcC--CCcccccc
Q 030546 161 MFDIG--EPLFLTQN 173 (175)
Q Consensus 161 L~~lg--i~~~~~~~ 173 (175)
|++|| |+|..|..
T Consensus 156 L~~~gp~i~D~~l~~ 170 (178)
T PF04752_consen 156 LRELGPGIRDPHLFA 170 (178)
T ss_pred HHHhCCCCCChHHHH
Confidence 99999 99987754
No 2
>KOG3182 consensus Predicted cation transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-65 Score=405.71 Aligned_cols=166 Identities=54% Similarity=0.964 Sum_probs=158.4
Q ss_pred CcceEEEecccccCCCCCCCeeeeeEEeceEEEEEeecccCCCCCCCCceEEEEEeCCCCeEEEEEEEeeCCcchHHHHH
Q 030546 1 MVFWVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAM 80 (175)
Q Consensus 1 ~~~wvFgYGSLmw~p~f~~~e~~~a~l~Gy~R~F~~~s~~~RGt~e~PG~v~tL~~~~g~~~~Gvay~v~~~~~~~~~~l 80 (175)
|++||||||||||||+|+|+++++|+|+||+|||||+|+||||||+.||||+||+++.++.||||||+|++ +++.+++
T Consensus 8 ~~lWVFGYGSLiW~Pgf~y~~~~~gfI~Gy~RrF~q~s~dHRGtp~~PGRv~TLi~~~e~~~wGvay~V~g--~~~~~~l 85 (212)
T KOG3182|consen 8 MALWVFGYGSLIWKPGFHYDESIPGFIKGYKRRFWQGSTDHRGTPEHPGRVATLIPYEEAITWGVAYRVRG--KQASEVL 85 (212)
T ss_pred ceEEEEeecceeecCCCCccccchhhheehhhheeccccccCCCCCCCceeEEeecCCcceEeeEEEEecc--hhHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999995 6888999
Q ss_pred HHHHHHhhcCCCceeEEEEecCCCCCCceeEEEEEEEecCCCCCcCccCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHH
Q 030546 81 EYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKA 160 (175)
Q Consensus 81 ~~Ld~RE~~~y~~~~v~v~~~~~~~~~~~~~al~yv~~~~~~~~~~y~g~~~~~~~a~~I~~a~G~~G~n~eYl~~l~~~ 160 (175)
++|+.||.+||..+.|+|++.+....|.+..++|||+++ +|+.|+||.|+++||++|++|.||||+|.|||++|+++
T Consensus 86 ~yl~~RE~nGY~~~~v~f~~e~~~~~p~v~~vlvyvaTp---~N~~ylGp~ple~iArqI~t~~GpsG~N~eYLf~La~a 162 (212)
T KOG3182|consen 86 EYLNVRELNGYTTHEVEFYPEDAAELPEVLGVLVYVATP---DNEYYLGPAPLEEIARQIVTARGPSGPNREYLFNLAKA 162 (212)
T ss_pred HHHHHHhhcCcceeeeeeeccCCCCCCceEEEEEEEecC---CCccccCCccHHHHHHHHHhccCCCCCcHHHHHHHHHH
Confidence 999999999999999999998877778888999999999 99999999999999999999999999999999999999
Q ss_pred HHhc--CCCcccc
Q 030546 161 MFDI--GEPLFLT 171 (175)
Q Consensus 161 L~~l--gi~~~~~ 171 (175)
|++| |.+|+.|
T Consensus 163 m~~l~p~~~D~hl 175 (212)
T KOG3182|consen 163 MRQLFPGAEDEHL 175 (212)
T ss_pred HHHcCCCchhHHH
Confidence 9999 6666543
No 3
>COG3703 ChaC Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-59 Score=371.20 Aligned_cols=160 Identities=34% Similarity=0.576 Sum_probs=147.2
Q ss_pred cceEEEecccccCCCCCCCeeeeeEEeceEEEEEeecccCCCCCCCCceEEEEEeCCCCeEEEEEEEeeCCcchHHHHHH
Q 030546 2 VFWVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAME 81 (175)
Q Consensus 2 ~~wvFgYGSLmw~p~f~~~e~~~a~l~Gy~R~F~~~s~~~RGt~e~PG~v~tL~~~~g~~~~Gvay~v~~~~~~~~~~l~ 81 (175)
.+||||||||||||+|++.++.+|+++||||+||+.|++||||+++||+|++|+ +||+|+||+||||+ +..+++++
T Consensus 11 ~~WVFgYGSLmW~P~f~~~e~~~a~~~G~~Rsfc~~s~~~RGT~~~PGlvl~L~--~GGsc~GvafRip~--~~~~~v~~ 86 (190)
T COG3703 11 ELWVFGYGSLMWNPGFEFTEVRRATLHGYHRSFCLRSTDHRGTAEQPGLVLGLD--RGGSCEGVAYRIPE--AHAEEVLE 86 (190)
T ss_pred CeEEEEecceeecCCccccceeEEEEecceeEEEEEEeeecCCcCCCceEEEee--CCCcEEEEEEEcCc--hhhHHHHH
Confidence 489999999999999999999999999999999999999999999999999997 59999999999994 78889999
Q ss_pred HHHHHhhc---CCCceeEEEEecCCCCCCceeEEEEEEEecCCCCCcCccCCCCHHHHHHHHHhccCCCCCCHHHHHHHH
Q 030546 82 YLERRECE---YDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLE 158 (175)
Q Consensus 82 ~Ld~RE~~---~y~~~~v~v~~~~~~~~~~~~~al~yv~~~~~~~~~~y~g~~~~~~~a~~I~~a~G~~G~n~eYl~~l~ 158 (175)
||++||++ .|.++++++..++ +..++|++||+++ +|++|+|+++.+++|.+|+.|+|+||+|.|||++|.
T Consensus 87 yL~~RE~~~t~~y~p~~l~v~~~~----g~~~~al~~v~~~---~h~qyag~l~~~~~A~~ia~a~G~sG~n~eYL~~t~ 159 (190)
T COG3703 87 YLREREMNYTLVYVPRWLPVELEG----GRRVNALVFVGDR---KHPQYAGDLDAEQIAAIIAAAVGLSGPNAEYLFNTL 159 (190)
T ss_pred HHHHhhccccceeeeEEEEEecCC----CcEEEEEEEEecC---CccccCCCCcHHHHHHHHHHHhCCCCCcHHHHHHHH
Confidence 99999996 3555555555444 3457899999999 999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccccc
Q 030546 159 KAMFDIGEPLFLTQ 172 (175)
Q Consensus 159 ~~L~~lgi~~~~~~ 172 (175)
++|+++||+|..|+
T Consensus 160 ~hL~~~gi~d~~l~ 173 (190)
T COG3703 160 QHLRKLGIRDHNLE 173 (190)
T ss_pred HHHHhcCCcchhHH
Confidence 99999999998875
No 4
>PHA03014 hypothetical protein; Provisional
Probab=99.77 E-value=1.5e-17 Score=131.26 Aligned_cols=144 Identities=12% Similarity=0.154 Sum_probs=110.4
Q ss_pred CcceEEEecccccCCCC--------CCCeeeeeEEeceEEEEEeecccCCCCCCCCceEEEEEeCCCCeEEEEEEEeeCC
Q 030546 1 MVFWVFGYGSLVWNPGF--------EYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGG 72 (175)
Q Consensus 1 ~~~wvFgYGSLmw~p~f--------~~~e~~~a~l~Gy~R~F~~~s~~~RGt~e~PG~v~tL~~~~g~~~~Gvay~v~~~ 72 (175)
|-.|+|||||+|....+ .......|.|.||.=+|.-. - ...|.++|++|++|+.|||++|+|+.
T Consensus 1 ~~~~YfAYGSNl~~~qm~~Rcp~~~~a~~vg~a~L~~~~~~L~f~-~------~~~Ga~ATIvp~~g~~V~Gvlw~i~~- 72 (163)
T PHA03014 1 MYKYYFGYGANQNINYLIHMHKLKIDFLNIKIGIILGHSFKLCYS-K------EIDSVIASIKKDDNGIVFGILYEFNE- 72 (163)
T ss_pred CceEEEEEccCcCHHHHHHhCCCCCCCceEEEEEeeccceEEecc-C------CcCCceEEEEECCCCEEEEEEEEeCH-
Confidence 66899999999976644 33445779999776666622 1 23577899999999999999999994
Q ss_pred cchHHHHHHHHHHHhhc---CCCceeEEEEecCCCCCCceeEEEEE--EEecCCCCCcCccCCCCHHHHHHHHHhccCCC
Q 030546 73 PEKERLAMEYLERRECE---YDSKTLVDFYREGEPSQPALTGVIVF--TSTPDKVSNKYYLGPAPLEEMARQIATAVGPC 147 (175)
Q Consensus 73 ~~~~~~~l~~Ld~RE~~---~y~~~~v~v~~~~~~~~~~~~~al~y--v~~~~~~~~~~y~g~~~~~~~a~~I~~a~G~~ 147 (175)
..++.||+.|+. .|.+..|+|...++.. ...|++| +.++ .++.+....|.+++.++|..+.-.+
T Consensus 73 -----~dl~~LD~~EGvp~~~Y~~~~v~V~~~~~~~---~~~a~~Y~~~~~~---~~~~~~~~~Ps~~Yl~~I~~Ga~e~ 141 (163)
T PHA03014 73 -----SIMKKFDKQEFIDKNIYKLAKMNVLDLEDEK---IIEAQAYKAILDD---DNNMFYDAPNFNIYKDIIIDALIEN 141 (163)
T ss_pred -----HHHHHHhhhcCCCcCceEEEEEEEEeCCCCc---EEEEEEEehhcCC---CcccccCCCChHHHHHHHHHHHHHh
Confidence 788999999984 5999999998765322 3579999 6565 5544444467788999999888888
Q ss_pred CC---CHHHHHHHHHHHHh
Q 030546 148 GN---NRDYLFKLEKAMFD 163 (175)
Q Consensus 148 G~---n~eYl~~l~~~L~~ 163 (175)
|- ..+|+..+.+-+.+
T Consensus 142 Gl~~~P~~Y~~~l~~~~~~ 160 (163)
T PHA03014 142 NILDYPLWYIKHINNIFKE 160 (163)
T ss_pred CCCCCcHHHHHHHHHHHHH
Confidence 88 88888888765543
No 5
>cd06661 GGCT_like GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is encoded by the gene C7orf24, and the enzyme participates in the gamma-glutamyl cycle. Hereditary defects in the gamma-glutamyl cycle have been described for some of the genes involved, but not for C7orf24. The synthesis and metabolism of glutathione (L-gamma-glutamyl-L-cysteinylglycine) ties the gamma-glutamyl cycle to numerous cellular processes; glutathione acts as a ubiquitous reducing agent in reductive mechanisms involved in protein and DNA synthesis, transport processes, enzyme activity, and metabolism. AIG2 (avrRpt2-induced gene) is an Arabidopsis protein that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2. avrRpt2 is an avir
Probab=99.74 E-value=1.2e-17 Score=119.10 Aligned_cols=92 Identities=21% Similarity=0.146 Sum_probs=77.3
Q ss_pred EEEecccccCCCC-----CCCeeeeeEEeceEEEEEeecccCCCCCCCCceEEEEEeCCCCeEEEEEEEeeCCcchHHHH
Q 030546 5 VFGYGSLVWNPGF-----EYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLA 79 (175)
Q Consensus 5 vFgYGSLmw~p~f-----~~~e~~~a~l~Gy~R~F~~~s~~~RGt~e~PG~v~tL~~~~g~~~~Gvay~v~~~~~~~~~~ 79 (175)
||+|||||+.+.+ ......+|+|+||++.|+..+ ...+|++++++.|+|++|+++ ++.
T Consensus 1 ~F~YGsl~~~~~~~~~~~~~~~~~~a~l~g~~l~~~~~~-----------~~p~~~~~~~~~v~G~v~~i~------~~~ 63 (99)
T cd06661 1 LFVYGTLMDGEVLHARLGRALFLGPATLKGYRLVFGGGS-----------GYPGLVPGPGARVWGELYEVD------PED 63 (99)
T ss_pred CEEeccCCChhHhHhhCCCCceEEEEEecCcEEEecCCC-----------ccCEEEeCCCCEEEEEEEEEC------HHH
Confidence 6999999999988 456779999999999999875 234666778889999999998 379
Q ss_pred HHHHHHHhhc--CCCceeEEEEecCCCCCCceeEEEEEEE
Q 030546 80 MEYLERRECE--YDSKTLVDFYREGEPSQPALTGVIVFTS 117 (175)
Q Consensus 80 l~~Ld~RE~~--~y~~~~v~v~~~~~~~~~~~~~al~yv~ 117 (175)
++.||++|+. .|.+..|++...++. ...|++|+.
T Consensus 64 l~~LD~~E~~~~~Y~r~~v~v~~~~~~----~~~a~~Y~~ 99 (99)
T cd06661 64 LARLDAFEGVPGGYRREEVEVELEDGE----GVEAWVYVA 99 (99)
T ss_pred HHhhhhhcCCCCCeEEEEEEEEeCCCC----EEEEEEEeC
Confidence 9999999996 899999999887542 257899973
No 6
>KOG4059 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=2.1e-11 Score=95.23 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=106.3
Q ss_pred ceEEEecccccCCCCCCC-----eeeeeEEeceEEEEEeecccCCCCCCCCceEEEEEeCCCCeEEEEEEEeeCCcchHH
Q 030546 3 FWVFGYGSLVWNPGFEYD-----EKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKER 77 (175)
Q Consensus 3 ~wvFgYGSLmw~p~f~~~-----e~~~a~l~Gy~R~F~~~s~~~RGt~e~PG~v~tL~~~~g~~~~Gvay~v~~~~~~~~ 77 (175)
+.+|||||.|--...++. --.+|.|..|+.-|-..|..+ -|-++||.+.+|..|||++.+++-
T Consensus 24 FlYFafGSNlL~~RIh~rnpsA~~~c~a~L~dfrLdFan~S~~W------~G~vATI~~t~GdeVWG~vWKm~~------ 91 (193)
T KOG4059|consen 24 FLYFAFGSNLLIKRIHIRNPSAVRICPALLPDFRLDFANESAGW------SGSVATIVPTQGDEVWGTVWKMDL------ 91 (193)
T ss_pred hhhhhcccchhhhheeecCCCceeeccccCcceeeecccccccc------ccceeEEecCCCCeEEEEEEEccc------
Confidence 578999999977776653 347899999999999887664 467899999999999999999994
Q ss_pred HHHHHHHHHhhc---CCCceeEEEEecCCCCCCceeEEEEEEEecCCCCCcCccCCCCHHHHHHHHHhccCCCCCCHHHH
Q 030546 78 LAMEYLERRECE---YDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYL 154 (175)
Q Consensus 78 ~~l~~Ld~RE~~---~y~~~~v~v~~~~~~~~~~~~~al~yv~~~~~~~~~~y~g~~~~~~~a~~I~~a~G~~G~n~eYl 154 (175)
+.+.-||..|+. -|.+..|.|.+..+.+ ..|-+|..+.=+ + +...|-.++-..|..++-.++...||+
T Consensus 92 snl~slDeQEgv~~G~Y~~~~V~V~t~eg~~----itcR~Yl~snl~-~----~P~~PSp~Yk~~i~~GAkEn~lP~dY~ 162 (193)
T KOG4059|consen 92 SNLPSLDEQEGVSQGIYEPRTVYVKTHEGES----ITCRAYLLSNLY-E----LPKQPSPTYKQCIVKGAKENSLPEDYV 162 (193)
T ss_pred ccCccchhhhcccccceEEEEEEEecCCCce----eehhHhhhhhhh-h----ccCCCCchHHhhhhhcccccCCcHHHH
Confidence 677889999964 5999999998775532 345667775411 1 122466788899999999999999999
Q ss_pred HHHH
Q 030546 155 FKLE 158 (175)
Q Consensus 155 ~~l~ 158 (175)
.+|.
T Consensus 163 qkL~ 166 (193)
T KOG4059|consen 163 QKLR 166 (193)
T ss_pred HHHh
Confidence 8874
No 7
>PF06094 AIG2: AIG2-like family; InterPro: IPR009288 AIG2 is an Arabidopsis protein that exhibit RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 []. Its structure consists of a five-stranded beta-barrel surrounded by two alpha-helices and a small beta-sheet. A long flexible alpha-helix protrudes from the structure at the C-terminal end. Conserved residues in a hydrophilic cavity, which are able to bind small ligands, may act as an active site in AIG2-like proteins [].; PDB: 1XHS_A 2KL2_A 1VKB_A 3JUD_A 3JUB_A 3JUC_A 2JQV_A 2QIK_A 2G0Q_A 1V30_A.
Probab=99.07 E-value=1.5e-09 Score=77.93 Aligned_cols=98 Identities=13% Similarity=-0.028 Sum_probs=63.7
Q ss_pred EEEecccccCCCCCCCee-eeeEEeceEEEEEeecccCCCCCCCCceEEEEEeCCCC-eEEEEEEEeeCCcchHHHHHHH
Q 030546 5 VFGYGSLVWNPGFEYDEK-ILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQET-ICWGVAYCVRGGPEKERLAMEY 82 (175)
Q Consensus 5 vFgYGSLmw~p~f~~~e~-~~a~l~Gy~R~F~~~s~~~RGt~e~PG~v~tL~~~~g~-~~~Gvay~v~~~~~~~~~~l~~ 82 (175)
||.|||||.....+..-. ..+.+.+........ .+.+ .|...+|++++++ .|+|.+|.|.. +.++.
T Consensus 1 lFvYGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~yP~l~~~~~~~~V~G~l~~v~~------~~l~~ 68 (102)
T PF06094_consen 1 LFVYGTLMDGEVNHSVLGRPGAKFIGEPATLGGR--YLYG----GGGYPALVPGEGSGRVEGELYEVDD------EELAR 68 (102)
T ss_dssp EEESSTTSTTSTTGHHGTSGSSEEEEEEEEEEEE--EEET----TSSCEEEESCTTSSEEEEEEEEE-H------HHHHH
T ss_pred CEEECCCCCCCcChhhhhccceEEEEeeEEEEeE--EEeC----CCCCCEEEEcCCCCEEEEEEEEECH------HHHHh
Confidence 799999998776542211 134444444444411 1111 1333466666776 99999999983 56999
Q ss_pred HHHHh--hcCCCceeEEEEecCCCCCCceeEEEEEEEe
Q 030546 83 LERRE--CEYDSKTLVDFYREGEPSQPALTGVIVFTST 118 (175)
Q Consensus 83 Ld~RE--~~~y~~~~v~v~~~~~~~~~~~~~al~yv~~ 118 (175)
||..| ...|.|..++|...++. .+.|.+|+.+
T Consensus 69 LD~~E~~~~~Y~R~~v~v~~~~g~----~~~a~vYv~~ 102 (102)
T PF06094_consen 69 LDEYEGEGSLYRRVRVPVELGDGE----EVEAWVYVWN 102 (102)
T ss_dssp HHHHTTTTTSEEEEEEEEECCTSS----EEEEEEEEE-
T ss_pred hHhhcCCCCceEEEEEEEEeCCCC----EeEEEEEEEC
Confidence 99996 46899999999876653 2479999863
No 8
>PF13772 AIG2_2: AIG2-like family; PDB: 2QIK_A 2RBH_B 2I5T_B 2Q53_A 2PN7_B 3CRY_A.
Probab=99.02 E-value=6.7e-10 Score=78.15 Aligned_cols=80 Identities=20% Similarity=0.276 Sum_probs=53.8
Q ss_pred eEEEEEEEeeCCcchHHHHHHHHHHHhhc---CCCceeEEEEecCCCCCCceeEEEEEEEecCCCCCcCccCCCCHHHHH
Q 030546 61 ICWGVAYCVRGGPEKERLAMEYLERRECE---YDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMA 137 (175)
Q Consensus 61 ~~~Gvay~v~~~~~~~~~~l~~Ld~RE~~---~y~~~~v~v~~~~~~~~~~~~~al~yv~~~~~~~~~~y~g~~~~~~~a 137 (175)
.|||++|+|+. +.++.||++|+. .|++..|+|...++. ...|++|++++ ... ..|..++.
T Consensus 1 ~V~Gvly~l~~------~d~~~LD~~Eg~~~g~Y~~~~v~V~~~~g~----~~~a~tY~~~~---~~~----~~Ps~~Yl 63 (83)
T PF13772_consen 1 RVWGVLYELSE------EDLESLDRYEGVPIGAYRRIEVTVSTADGK----PVEAFTYVANP---KPE----GPPSDRYL 63 (83)
T ss_dssp EEEEEEEEEEG------GGHHHHHHHTTTTTTSEEEEEEEEEETTCE----EEEEEEEEESS---EEE--------HHHH
T ss_pred CEEEEEEEECH------HHHHHHHHhcCCCCCCEEEEEEEEEcCCCC----EEEEEEEEcCC---CCC----CCCCHHHH
Confidence 48999999995 688999999983 599999999875442 36799999988 422 33555555
Q ss_pred HHHHhccCCCCCCHHHHHHH
Q 030546 138 RQIATAVGPCGNNRDYLFKL 157 (175)
Q Consensus 138 ~~I~~a~G~~G~n~eYl~~l 157 (175)
..|.+++-..|...+|+.+|
T Consensus 64 ~~i~~GA~e~gLp~~Yv~~L 83 (83)
T PF13772_consen 64 DLILRGAREHGLPAEYVEKL 83 (83)
T ss_dssp HHHHHHHHHCT--HHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHhhC
Confidence 55555555555555555543
No 9
>COG2105 Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.00025 Score=53.54 Aligned_cols=91 Identities=21% Similarity=0.145 Sum_probs=61.2
Q ss_pred EEEecccccCCCCCC------CeeeeeEEeceEEEEEeecccCCCCCCCCceEEEEEeCCCCeEEEEEEEeeCCcchHHH
Q 030546 5 VFGYGSLVWNPGFEY------DEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERL 78 (175)
Q Consensus 5 vFgYGSLmw~p~f~~------~e~~~a~l~Gy~R~F~~~s~~~RGt~e~PG~v~tL~~~~g~~~~Gvay~v~~~~~~~~~ 78 (175)
||-||||.=...=+. ..-..+.++||+--. .. +..|| ++++ .+.|+|=+|+++ ++
T Consensus 4 vfVYGTLr~Ge~N~~~~~~~~~~~~~~~~~gy~ly~-lg-------~~YP~----~~~g-~~~V~Gevy~~d------~~ 64 (120)
T COG2105 4 VFVYGTLRPGEGNHHRYLKGARFLGEASTKGYQLYD-LG-------PGYPG----LVPG-EGKVHGEVYRID------EE 64 (120)
T ss_pred EEEEeccCCCCcchHHHHhcCcccCcceeeeeeeec-cC-------CCCcE----EcCC-CCEEEEEEEEEC------HH
Confidence 999999973322211 112446677744322 21 22554 4443 359999999999 48
Q ss_pred HHHHHHHHhhc-CCCceeEEEEecCCCCCCceeEEEEEEEec
Q 030546 79 AMEYLERRECE-YDSKTLVDFYREGEPSQPALTGVIVFTSTP 119 (175)
Q Consensus 79 ~l~~Ld~RE~~-~y~~~~v~v~~~~~~~~~~~~~al~yv~~~ 119 (175)
.++.||.-|.. .|.+++|.+.+..++. .|++|+.+.
T Consensus 65 ~l~~LDelE~~~~y~r~~v~v~~~~G~~-----~aw~Y~y~~ 101 (120)
T COG2105 65 TLEALDELEDYGGYYRREVEVTTPLGSK-----EAWLYVYAE 101 (120)
T ss_pred HHhhhhhhhccCceEEEEEEEEcCCCCE-----EEEEEEEcC
Confidence 99999999986 4778888777665532 589999987
No 10
>KOG4450 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.96 E-value=0.33 Score=38.21 Aligned_cols=84 Identities=15% Similarity=0.088 Sum_probs=55.5
Q ss_pred eEEEecccccCCCCCCCeeeeeEEeceEEEEEeecccCCCCCCCCceEEE-------EEeCC--CCeEEEEEEEeeCCcc
Q 030546 4 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCT-------LEKSQ--ETICWGVAYCVRGGPE 74 (175)
Q Consensus 4 wvFgYGSLmw~p~f~~~e~~~a~l~Gy~R~F~~~s~~~RGt~e~PG~v~t-------L~~~~--g~~~~Gvay~v~~~~~ 74 (175)
-||-||.|=-...=++.-. -.+.|..+-.++..+. -..| +|.+ |...+ |--|+|=+|.|+.
T Consensus 8 lvFVYGTLKrg~pNh~~L~--d~~~g~A~F~gr~~T~----~kyP-LVigt~ynIPfLLnkpGsG~~V~GElY~Vd~--- 77 (168)
T KOG4450|consen 8 LVFVYGTLKRGQPNHFLLE--DLINGDAVFIGRGTTL----LKYP-LVIGTRYNIPFLLNKPGSGYHVEGELYEVDE--- 77 (168)
T ss_pred EEEEEeeecCCCCCchhhh--hccCCceEEEEeceec----cccc-eEeecccCCceEEcCCCCcceeeeEEEEeCH---
Confidence 6999999965444333222 2237777666665432 4455 4444 33333 5579999999994
Q ss_pred hHHHHHHHHHHHhh--cCCCceeEEEEe
Q 030546 75 KERLAMEYLERREC--EYDSKTLVDFYR 100 (175)
Q Consensus 75 ~~~~~l~~Ld~RE~--~~y~~~~v~v~~ 100 (175)
.-|..||.-|. +.|.|..+.+..
T Consensus 78 ---rmL~~LD~lE~~~~~Y~R~~i~v~~ 102 (168)
T KOG4450|consen 78 ---RMLSRLDELEGCPNHYEREPIRVIE 102 (168)
T ss_pred ---HHHhhhHhhcccHHHhhhhhhHHHH
Confidence 78999999998 478887766653
No 11
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=62.55 E-value=13 Score=32.24 Aligned_cols=75 Identities=15% Similarity=0.183 Sum_probs=53.1
Q ss_pred CCCCceEEEEEeCCCCeEEEEEEEeeCCcchHHHHHHHHHHHhhcCCCceeEEEEecCCCCCCc----------eeEEEE
Q 030546 45 PQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPA----------LTGVIV 114 (175)
Q Consensus 45 ~e~PG~v~tL~~~~g~~~~Gvay~v~~~~~~~~~~l~~Ld~RE~~~y~~~~v~v~~~~~~~~~~----------~~~al~ 114 (175)
-..-|++.+|+-.+-|.|-|.+|--. +..-..++-+-+.||.|..-++|..+..++.. -..++.
T Consensus 146 Dr~dgl~~tlvv~~~g~~Lglvyssk------es~a~ti~~g~gvy~SRsR~~lW~KGetSgn~q~ll~i~vDCD~D~l~ 219 (359)
T KOG4311|consen 146 DRKDGLVATLVVVDTGAVLGLVYSSK------ESLATTISSGKGVYFSRSRSTLWTKGETSGNFQNLLDIYVDCDRDSLI 219 (359)
T ss_pred CCCCCeEEEEEehhhhhhhhhhcccH------HHHHHHHhcCcceEEecccceeeeccccCcCceeeEEEeeccCccceE
Confidence 34558888898888999999999776 23445678888888877666666655433211 124899
Q ss_pred EEEecCCCCCcCcc
Q 030546 115 FTSTPDKVSNKYYL 128 (175)
Q Consensus 115 yv~~~~~~~~~~y~ 128 (175)
|++.+ ++|-|.
T Consensus 220 f~v~q---~g~gfC 230 (359)
T KOG4311|consen 220 FLVTQ---DGPGFC 230 (359)
T ss_pred EEEec---CCCccc
Confidence 99999 887554
No 12
>COG4762 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.01 E-value=7.3 Score=30.76 Aligned_cols=11 Identities=45% Similarity=0.727 Sum_probs=9.2
Q ss_pred cceEEEecccc
Q 030546 2 VFWVFGYGSLV 12 (175)
Q Consensus 2 ~~wvFgYGSLm 12 (175)
..|.||||+|=
T Consensus 99 ~~~gf~yGTL~ 109 (168)
T COG4762 99 DVRGFGYGTLP 109 (168)
T ss_pred ceeEEeecccC
Confidence 47999999983
No 13
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=51.65 E-value=60 Score=26.87 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=31.1
Q ss_pred ccCCCCHHHHHHHHHhccC-------CCCCCHHHHHHHHHHHHhcCCC
Q 030546 127 YLGPAPLEEMARQIATAVG-------PCGNNRDYLFKLEKAMFDIGEP 167 (175)
Q Consensus 127 y~g~~~~~~~a~~I~~a~G-------~~G~n~eYl~~l~~~L~~lgi~ 167 (175)
|.-..+..++++..+.|-| ..|++.+|+..|.+.|+++|+.
T Consensus 40 ~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~gv~ 87 (223)
T TIGR00290 40 YMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHTLDVE 87 (223)
T ss_pred ccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHcCCC
Confidence 3333445577788888887 3577899999999999999864
No 14
>PF13772 AIG2_2: AIG2-like family; PDB: 2QIK_A 2RBH_B 2I5T_B 2Q53_A 2PN7_B 3CRY_A.
Probab=38.12 E-value=24 Score=24.12 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHhcCCCcccccc
Q 030546 149 NNRDYLFKLEKAMFDIGEPLFLTQN 173 (175)
Q Consensus 149 ~n~eYl~~l~~~L~~lgi~~~~~~~ 173 (175)
|+.+||..+.+..++.|+++.+++.
T Consensus 58 Ps~~Yl~~i~~GA~e~gLp~~Yv~~ 82 (83)
T PF13772_consen 58 PSDRYLDLILRGAREHGLPAEYVEK 82 (83)
T ss_dssp --HHHHHHHHHHHHHCT--HHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHhh
Confidence 8999999999999999999988763
No 15
>PRK10708 hypothetical protein; Provisional
Probab=37.29 E-value=44 Score=22.06 Aligned_cols=25 Identities=28% Similarity=0.520 Sum_probs=20.6
Q ss_pred CCCCCCCceEEEEEeCCCCeEEEEEEEee
Q 030546 42 RGTPQHPARTCTLEKSQETICWGVAYCVR 70 (175)
Q Consensus 42 RGt~e~PG~v~tL~~~~g~~~~Gvay~v~ 70 (175)
-|-|.++|.++++++ .-+|+.|.|+
T Consensus 12 DG~~rR~G~iLavE~----F~EG~MyLva 36 (62)
T PRK10708 12 DGGPRRPGVVLAVEE----FSEGTMYLVS 36 (62)
T ss_pred CCCccccceEEEEee----ccCcEEEEEE
Confidence 377889999999976 5578889887
No 16
>KOG2631 consensus Class II aldolase/adducin N-terminal domain protein [Carbohydrate transport and metabolism]
Probab=37.06 E-value=27 Score=29.12 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHhcCCCcccc
Q 030546 150 NRDYLFKLEKAMFDIGEPLFLT 171 (175)
Q Consensus 150 n~eYl~~l~~~L~~lgi~~~~~ 171 (175)
+.||||.++=.|+++||+++-.
T Consensus 209 cydYLfelaikm~klgipp~~~ 230 (238)
T KOG2631|consen 209 CYDYLFELAIKMKKLGIPPEQF 230 (238)
T ss_pred HHHHHHHHHHHHHHcCCChhhC
Confidence 5799999999999999997654
No 17
>PRK02759 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed
Probab=37.04 E-value=2.1e+02 Score=23.50 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=56.8
Q ss_pred ceEEEEEeC-CCCeEEEEEEEeeCCcchHHHHHHHHHHHhhcCCCceeEEEEecCCCCCCc----------eeEEEEEEE
Q 030546 49 ARTCTLEKS-QETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPA----------LTGVIVFTS 117 (175)
Q Consensus 49 G~v~tL~~~-~g~~~~Gvay~v~~~~~~~~~~l~~Ld~RE~~~y~~~~v~v~~~~~~~~~~----------~~~al~yv~ 117 (175)
|++.+++.+ ..|.|-.++|--.. ..-+-|...+.-+|.|..-.+|..+..++.. -..++.|.+
T Consensus 15 gLip~ivqd~~tg~vLml~ymn~e------al~~Tl~tg~~~~~SRSr~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V 88 (203)
T PRK02759 15 GLIPAIVQDALTGEVLMLGYMNRE------ALEKTLETGEVTFFSRSKQRLWTKGETSGNTQKVVSIRLDCDNDTLLVLV 88 (203)
T ss_pred CcEEEEEEECCCCCEEEEEecCHH------HHHHHHhcCcEEEEeCCCCcccCCCCCCCCeEEEEEEEecCCCCeEEEEE
Confidence 899998876 67899999997761 2333455555556665444455444333221 024688888
Q ss_pred ecCCCCC--------cCccCC----C---CHHHHHHHHHhccCCCCCCHHHHHHHH
Q 030546 118 TPDKVSN--------KYYLGP----A---PLEEMARQIATAVGPCGNNRDYLFKLE 158 (175)
Q Consensus 118 ~~~~~~~--------~~y~g~----~---~~~~~a~~I~~a~G~~G~n~eYl~~l~ 158 (175)
.+ .. ..|-.. . -++++.++|..-.. ..|...|.-+|.
T Consensus 89 ~~---~G~aCHtg~~sCF~~~~~~~~~~~~L~~L~~~I~~Rk~-~~pe~SYT~~L~ 140 (203)
T PRK02759 89 EP---IGPACHTGTRSCFYREKKAAPPWDFLSQLEQLIAERKN-APPEGSYTAKLF 140 (203)
T ss_pred Ee---cCCcCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHh-CCCCCcHHHHHH
Confidence 76 32 233221 1 25777777765443 334455555554
No 18
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=34.88 E-value=50 Score=30.22 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=29.3
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCc
Q 030546 134 EEMARQIATAVGPCGNNRDYLFKLEKAMFDIGEPL 168 (175)
Q Consensus 134 ~~~a~~I~~a~G~~G~n~eYl~~l~~~L~~lgi~~ 168 (175)
.++++...+|....|++..+|.++++.+.++|+++
T Consensus 442 ~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~~~~~ 476 (477)
T PLN02863 442 KELRRAALDAIKERGSSVKDLDGFVKHVVELGLEE 476 (477)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHhccCC
Confidence 44555666778889999999999999999999875
No 19
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=33.86 E-value=18 Score=30.17 Aligned_cols=20 Identities=25% Similarity=0.150 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCCCccccccC
Q 030546 155 FKLEKAMFDIGEPLFLTQNM 174 (175)
Q Consensus 155 ~~l~~~L~~lgi~~~~~~~~ 174 (175)
-+++.+|++|||.+-++|||
T Consensus 193 ar~a~ylrEMgigpgLlq~m 212 (245)
T COG3904 193 ARLAAYLREMGIGPGLLQMM 212 (245)
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 34889999999999999998
No 20
>COG5452 Uncharacterized conserved protein [Function unknown]
Probab=32.80 E-value=60 Score=25.82 Aligned_cols=29 Identities=14% Similarity=0.315 Sum_probs=24.6
Q ss_pred CHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCcc
Q 030546 132 PLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGEPLF 169 (175)
Q Consensus 132 ~~~~~a~~I~~a~G~~G~n~eYl~~l~~~L~~lgi~~~ 169 (175)
..+++|+.|. .+|...+.++||+|||-|-
T Consensus 67 a~qeiaQei~---------Daff~dvDhs~RElGigD~ 95 (180)
T COG5452 67 AAQEIAQEIV---------DAFFKDVDHSLRELGIGDQ 95 (180)
T ss_pred HHHHHHHHHH---------HHHHhhhhHHHHHhCCCcc
Confidence 4678888887 5799999999999999874
No 21
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=31.17 E-value=41 Score=25.16 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=30.4
Q ss_pred EecCCCCCcCccCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCccc
Q 030546 117 STPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGEPLFL 170 (175)
Q Consensus 117 ~~~~~~~~~~y~g~~~~~~~a~~I~~a~G~~G~n~eYl~~l~~~L~~lgi~~~~ 170 (175)
.+| .+|.|---++.+++++.. |++.+-+..+.+.|++.|+....
T Consensus 37 sdP---~s~~Ygk~Lt~~e~~~~~-------~p~~~~v~~V~~wL~~~G~~~~~ 80 (143)
T PF09286_consen 37 SDP---GSPNYGKYLTPEEFAALF-------APSPEDVAAVKSWLKSHGLTVVE 80 (143)
T ss_dssp HTT---TSTTTT----HHHHHHHH-------S--HHHHHHHHHHHHHCT-EEEE
T ss_pred cCC---CCcccccCCCHHHHHHHH-------CCCHHHHHHHHHHHHHcCCceeE
Confidence 456 778887788999988874 58999999999999999987554
No 22
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=30.87 E-value=66 Score=21.26 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=20.7
Q ss_pred CCCCCCCceEEEEEeCCCCeEEEEEEEee
Q 030546 42 RGTPQHPARTCTLEKSQETICWGVAYCVR 70 (175)
Q Consensus 42 RGt~e~PG~v~tL~~~~g~~~~Gvay~v~ 70 (175)
-|-|-++|.++++++ .-+|+.|.|+
T Consensus 12 DG~~rR~G~ilavE~----F~EG~MYLva 36 (62)
T PF10781_consen 12 DGGPRREGVILAVEP----FNEGTMYLVA 36 (62)
T ss_pred CCcccccceEEEEee----ccCcEEEEEE
Confidence 377889999999976 5678889988
No 23
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=30.26 E-value=81 Score=26.55 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCC
Q 030546 129 GPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGEP 167 (175)
Q Consensus 129 g~~~~~~~a~~I~~a~G~~G~n~eYl~~l~~~L~~lgi~ 167 (175)
|+.+.+++|+.+ |.+.+++.+|.++|-.+|+=
T Consensus 22 gp~t~~eLA~~~-------~~~~~~~~~lL~~L~~lgll 53 (306)
T TIGR02716 22 GPKDLATLAADT-------GSVPPRLEMLLETLRQMRVI 53 (306)
T ss_pred CCCCHHHHHHHc-------CCChHHHHHHHHHHHhCCCe
Confidence 678888888753 78899999999999999974
No 24
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=28.94 E-value=1e+02 Score=23.71 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=32.0
Q ss_pred EEEEEEEecCCCCCcCccCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 030546 111 GVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGE 166 (175)
Q Consensus 111 ~al~yv~~~~~~~~~~y~g~~~~~~~a~~I~~a~G~~G~n~eYl~~l~~~L~~lgi 166 (175)
.|++|++.. +. .++.+.+++|+. .|.|..||.++...|++-|+
T Consensus 12 ~~L~~LA~~-----~~-~~~~s~~~IA~~-------~~is~~~L~kil~~L~kaGl 54 (150)
T COG1959 12 RALLYLALL-----PG-GGPVSSAEIAER-------QGISPSYLEKILSKLRKAGL 54 (150)
T ss_pred HHHHHHHhC-----CC-CCcccHHHHHHH-------hCcCHHHHHHHHHHHHHcCC
Confidence 467777754 21 125667777665 57899999999999999886
No 25
>PF07107 WI12: Wound-induced protein WI12; InterPro: IPR009798 This entry consists of several plant wound-induced protein sequences related to WI12 from Mesembryanthemum crystallinum (Common ice plant) (Q9XES3 from SWISSPROT). Wounding, methyl jasmonate, and pathogen infection is known to induce local WI12 expression. WI12 expression is also thought to be developmentally controlled in the placenta and developing seeds. WI12 preferentially accumulates in the cell wall and it has been suggested that it plays a role in the reinforcement of cell wall composition after wounding and during plant development [].
Probab=27.01 E-value=42 Score=24.91 Aligned_cols=26 Identities=8% Similarity=-0.004 Sum_probs=20.1
Q ss_pred ceEEEEEeecccCCCCCCCCceEEEE
Q 030546 29 DYRRVFDLACIDHRGTPQHPARTCTL 54 (175)
Q Consensus 29 Gy~R~F~~~s~~~RGt~e~PG~v~tL 54 (175)
.-....||.....|-...-||+||+|
T Consensus 84 ~~~~~vWqS~~~d~~~~SlPGLVLAI 109 (109)
T PF07107_consen 84 SHCPCVWQSRLPDRAGKSLPGLVLAI 109 (109)
T ss_pred CCCCceecccccccccCCcCCEEEeC
Confidence 34556788877777788899999985
No 26
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=26.98 E-value=68 Score=20.14 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCc
Q 030546 147 CGNNRDYLFKLEKAMFDIGEPL 168 (175)
Q Consensus 147 ~G~n~eYl~~l~~~L~~lgi~~ 168 (175)
.|.+.+|-.-++..||.+||+=
T Consensus 6 ~G~C~~~a~l~~~llr~~GIpa 27 (68)
T smart00460 6 YGTCGEFAALFVALLRSLGIPA 27 (68)
T ss_pred ceeeHHHHHHHHHHHHHCCCCe
Confidence 6889999999999999999974
No 27
>PF11784 DUF3320: Protein of unknown function (DUF3320); InterPro: IPR021754 This family is conserved in Proteobacteria and Chlorobi families. Many members are annotated as being putative DNA helicase-related proteins.
Probab=26.31 E-value=61 Score=20.45 Aligned_cols=21 Identities=43% Similarity=0.537 Sum_probs=17.0
Q ss_pred cCCCCHHHHHHHHHhccCCCC
Q 030546 128 LGPAPLEEMARQIATAVGPCG 148 (175)
Q Consensus 128 ~g~~~~~~~a~~I~~a~G~~G 148 (175)
.||...+.+++.|+++.|.+=
T Consensus 24 EgPI~~~~L~~Ri~~a~G~~R 44 (52)
T PF11784_consen 24 EGPIHEDELARRIARAWGLSR 44 (52)
T ss_pred cCCccHHHHHHHHHHHcCccc
Confidence 478888999999999988653
No 28
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=25.85 E-value=1.1e+02 Score=19.85 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCC
Q 030546 131 APLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGEP 167 (175)
Q Consensus 131 ~~~~~~a~~I~~a~G~~G~n~eYl~~l~~~L~~lgi~ 167 (175)
.+.+++|.. .|.+++.+-++.+.|++-|+=
T Consensus 29 lt~~~iA~~-------~g~sr~tv~r~l~~l~~~g~I 58 (76)
T PF13545_consen 29 LTQEEIADM-------LGVSRETVSRILKRLKDEGII 58 (76)
T ss_dssp SSHHHHHHH-------HTSCHHHHHHHHHHHHHTTSE
T ss_pred CCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCE
Confidence 556777766 478899999999999998864
No 29
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=25.00 E-value=96 Score=20.95 Aligned_cols=30 Identities=27% Similarity=0.404 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 030546 130 PAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGE 166 (175)
Q Consensus 130 ~~~~~~~a~~I~~a~G~~G~n~eYl~~l~~~L~~lgi 166 (175)
+.+.+++|+. .|.|..||.++.+.|.+-|+
T Consensus 25 ~~s~~eiA~~-------~~i~~~~l~kil~~L~~~Gl 54 (83)
T PF02082_consen 25 PVSSKEIAER-------LGISPSYLRKILQKLKKAGL 54 (83)
T ss_dssp -BEHHHHHHH-------HTS-HHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHH-------HCcCHHHHHHHHHHHhhCCe
Confidence 4778888876 46899999999999999987
No 30
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=24.16 E-value=39 Score=27.56 Aligned_cols=9 Identities=44% Similarity=1.317 Sum_probs=7.6
Q ss_pred cceEEEecc
Q 030546 2 VFWVFGYGS 10 (175)
Q Consensus 2 ~~wvFgYGS 10 (175)
.+|+|||++
T Consensus 18 GIWl~gy~~ 26 (198)
T PF08480_consen 18 GIWLFGYDG 26 (198)
T ss_pred eEEEEecCC
Confidence 589999984
No 31
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=23.59 E-value=93 Score=16.38 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=19.0
Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHhcCCCc
Q 030546 139 QIATAVGPCGNNRDYLFKLEKAMFDIGEPL 168 (175)
Q Consensus 139 ~I~~a~G~~G~n~eYl~~l~~~L~~lgi~~ 168 (175)
.+.++...+|.- |=.+++.+.|++.||++
T Consensus 6 ~ll~a~~~~g~~-~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 6 ALLRACAKAGDP-DAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHHhCCCC
Confidence 344455544443 33888899999988864
No 32
>PF06577 DUF1134: Protein of unknown function (DUF1134); InterPro: IPR008325 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.75 E-value=1.6e+02 Score=23.27 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=29.0
Q ss_pred EeceEEEEEeecccCCCCCCCCceEEEEEeCCCCeEEEEEEEeeCCcchHHHHHHHHHHHhh
Q 030546 27 IKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERREC 88 (175)
Q Consensus 27 l~Gy~R~F~~~s~~~RGt~e~PG~v~tL~~~~g~~~~Gvay~v~~~~~~~~~~l~~Ld~RE~ 88 (175)
-.|.|+.|||. |-+-..+= .+++.+-.++|.++. .+.|+.|=.
T Consensus 65 ~~g~~~vyWqG----------PSiG~D~G-~~~~r~~~LVYnL~~--------~~~iy~Rf~ 107 (160)
T PF06577_consen 65 NAGQHKVYWQG----------PSIGFDFG-GNGSRVFMLVYNLPD--------PDDIYQRFP 107 (160)
T ss_pred CCCeeEEEEeC----------CceeEeec-CCceEEEEEEEcCCC--------HHHHhhhCC
Confidence 45789999997 33333332 246789999999993 355777754
No 33
>PF15409 PH_8: Pleckstrin homology domain
Probab=21.68 E-value=41 Score=23.94 Aligned_cols=14 Identities=0% Similarity=0.095 Sum_probs=11.0
Q ss_pred eeEEeceEEEEEee
Q 030546 24 LGFIKDYRRVFDLA 37 (175)
Q Consensus 24 ~a~l~Gy~R~F~~~ 37 (175)
.=.++||+|||-.-
T Consensus 8 r~~lqG~~kRyFvL 21 (89)
T PF15409_consen 8 RKPLQGWHKRYFVL 21 (89)
T ss_pred cccCCCceeEEEEE
Confidence 34699999998765
Done!