Query 030546
Match_columns 175
No_of_seqs 129 out of 684
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 01:08:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030546.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030546hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cry_A Gamma-glutamyl cyclotra 100.0 1.3E-29 4.3E-34 201.9 8.7 140 1-159 15-162 (188)
2 2qik_A UPF0131 protein YKQA; N 100.0 2.8E-29 9.6E-34 211.6 10.9 142 2-169 127-279 (285)
3 2jqv_A AT3G28950, AIG2 protein 99.8 1.4E-19 4.7E-24 141.2 9.3 134 1-165 7-146 (165)
4 2g0q_A AT5G39720.1 protein; st 99.7 9.3E-18 3.2E-22 132.2 9.9 137 2-169 17-159 (173)
5 1xhs_A Hypothetical UPF0131 pr 98.9 7.6E-09 2.6E-13 76.7 8.9 88 3-119 1-95 (121)
6 1v30_A Hypothetical UPF0131 pr 98.9 4.8E-09 1.7E-13 78.1 7.4 89 1-119 6-100 (124)
7 3jud_A AIG2-like domain-contai 98.8 2.1E-08 7.2E-13 77.3 8.1 107 3-128 2-129 (153)
8 1vkb_A Hypothetical protein; g 98.7 1.9E-09 6.5E-14 83.7 0.8 124 2-154 13-156 (161)
9 2qik_A UPF0131 protein YKQA; N 98.3 4.3E-06 1.5E-10 69.8 10.5 93 1-119 1-101 (285)
10 3cry_A Gamma-glutamyl cyclotra 50.1 6.7 0.00023 29.8 1.7 27 147-173 133-159 (188)
11 4fp9_B Mterf domain-containing 30.4 41 0.0014 28.2 3.6 43 130-172 89-131 (335)
12 2y75_A HTH-type transcriptiona 26.9 71 0.0024 22.0 4.0 30 130-166 26-55 (129)
13 3vjz_A DMP19, putative unchara 23.5 42 0.0014 25.6 2.2 27 137-169 65-93 (166)
14 3lst_A CALO1 methyltransferase 20.3 1.1E+02 0.0039 24.6 4.5 32 129-167 54-85 (348)
15 3i53_A O-methyltransferase; CO 20.0 1.2E+02 0.0041 24.1 4.5 33 129-168 37-69 (332)
No 1
>3cry_A Gamma-glutamyl cyclotransferase; enzyme, oxoproline; 1.70A {Homo sapiens} PDB: 2pn7_A 2rbh_A 2i5t_A* 2q53_A
Probab=99.96 E-value=1.3e-29 Score=201.89 Aligned_cols=140 Identities=15% Similarity=0.162 Sum_probs=120.1
Q ss_pred CcceEEEecccccCCCCCC-----CeeeeeEEeceEEEEEeecccCCCCCCCCceEEEEEeCCCCeEEEEEEEeeCCcch
Q 030546 1 MVFWVFGYGSLVWNPGFEY-----DEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEK 75 (175)
Q Consensus 1 ~~~wvFgYGSLmw~p~f~~-----~e~~~a~l~Gy~R~F~~~s~~~RGt~e~PG~v~tL~~~~g~~~~Gvay~v~~~~~~ 75 (175)
+.+|||+||||||++.|.. ....+|+|+||+|.|++.|.+| ++..+|.+++|++++++.|||++|+|+.
T Consensus 15 ~~~~~FaYGSlm~~~~~~~~~~~~~~~~~a~l~gy~l~f~~~~~~~--~~~~~g~~~~lv~~~g~~V~G~ly~v~~---- 88 (188)
T 3cry_A 15 ESFLYFAYGSNLLTERIHLRNPSAAFFCVARLQDFKLDFGNSQGKT--SQTWHGGIATIFQSPGDEVWGVVWKMNK---- 88 (188)
T ss_dssp CEEEEEECSGGGSHHHHHHHCTTCEEEEEEEEEEEEEEEEEETTCC--CTTTSSCEEEEEEEEEEEEEEEEEEEEG----
T ss_pred CCEEEEEEccCCCHHHHHhhCCCCceEEEEEEcCEEEEECCCCCCC--cCCCCCeeEeEEeCCCCEEEEEEEEECH----
Confidence 3689999999999998754 2568999999999999998777 6677899999999889999999999995
Q ss_pred HHHHHHHHHHHhhc---CCCceeEEEEecCCCCCCceeEEEEEEEecCCCCCcCccCCCCHHHHHHHHHhccCCCCCCHH
Q 030546 76 ERLAMEYLERRECE---YDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRD 152 (175)
Q Consensus 76 ~~~~l~~Ld~RE~~---~y~~~~v~v~~~~~~~~~~~~~al~yv~~~~~~~~~~y~g~~~~~~~a~~I~~a~G~~G~n~e 152 (175)
+.++.||+||+. .|.+..|+|...++. .+.|++|++++ .++ ..|.++++.+|+++.+.+|.+.|
T Consensus 89 --~~l~~LD~~Eg~~~g~Y~r~~v~V~~~~g~----~~~a~vYv~~~---~~~----~~ps~~Yl~~i~~g~~~~gl~~~ 155 (188)
T 3cry_A 89 --SNLNSLDEQQGVKSGMYVVIEVKVATQEGK----EITCRSYLMTN---YES----APPSPQYKKIICMGAKENGLPLE 155 (188)
T ss_dssp --GGHHHHHHHTTGGGTSCEEEEEEEEETTCC----EEEEEEEECSS---EEE----CCCCHHHHHHHHHHHHHTTCCHH
T ss_pred --HHHHHHHHHhCCCCCcEEEEEEEEEeCCCC----EEEEEEEEecC---CCC----CCChHHHHHHHHHHHHHhCcCHH
Confidence 568999999984 799999999876542 35799999987 543 46889999999999999999999
Q ss_pred HHHHHHH
Q 030546 153 YLFKLEK 159 (175)
Q Consensus 153 Yl~~l~~ 159 (175)
|+.+|..
T Consensus 156 y~~~L~~ 162 (188)
T 3cry_A 156 YQEKLKA 162 (188)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9998864
No 2
>2qik_A UPF0131 protein YKQA; NESG, SR631, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CIT; 1.35A {Bacillus subtilis}
Probab=99.96 E-value=2.8e-29 Score=211.58 Aligned_cols=142 Identities=20% Similarity=0.222 Sum_probs=120.3
Q ss_pred cceEEEecccccCCCCCCC--------eeeeeEEeceEEEEEeecccCCCCCCCCceEEEEEeCCCCeEEEEEEEeeCCc
Q 030546 2 VFWVFGYGSLVWNPGFEYD--------EKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGP 73 (175)
Q Consensus 2 ~~wvFgYGSLmw~p~f~~~--------e~~~a~l~Gy~R~F~~~s~~~RGt~e~PG~v~tL~~~~g~~~~Gvay~v~~~~ 73 (175)
.+||||||||||++.|... ...+|+|+||+|+|| .+.++ |.+++|+++ ++.|||++|+|+.
T Consensus 127 ~~~yFaYGSnm~~~~~~~~~~p~~~~~~~~~a~L~G~~l~F~-~~~~~-------~g~a~iv~~-g~~v~Gvly~i~~-- 195 (285)
T 2qik_A 127 PIYYFAYGSCMDNARFQKAGVDHYFQDPVGRAVLKGYTTRFT-LKRED-------GSRADMLED-GGTTEGVLYRIPY-- 195 (285)
T ss_dssp SEEEEECSGGGSSHHHHHHTCGGGSSCEEEEEEEETCEEEEE-EEETT-------EEEEEEECS-SCEEEEEEEEECG--
T ss_pred cEEEEEechhcCHhhcccccCCcccceEeEEEEEeCeEEEcC-cCCCC-------CeeeeEEEC-CCEEEEEEEEECH--
Confidence 6899999999999998762 236999999999999 66655 456799998 9999999999995
Q ss_pred chHHHHHHHHHHHhhc---CCCceeEEEEecCCCCCCceeEEEEEEEecCCCCCcCccCCCCHHHHHHHHHhccCCCCCC
Q 030546 74 EKERLAMEYLERRECE---YDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNN 150 (175)
Q Consensus 74 ~~~~~~l~~Ld~RE~~---~y~~~~v~v~~~~~~~~~~~~~al~yv~~~~~~~~~~y~g~~~~~~~a~~I~~a~G~~G~n 150 (175)
+.+++||+||+. .|.+..|+|...++ ..+.|+||++++ ++ .+..|.++++++|+++.+ +|.+
T Consensus 196 ----~~l~~LD~~Eg~~~g~Y~r~~v~v~~~~g----~~~~a~~Yv~~~---~~---~~~~Ps~~Yl~~i~~g~~-~g~~ 260 (285)
T 2qik_A 196 ----SALSYLYKREGVESLTYRPAFVDVEAGGR----HYKDCLTFLVLQ---KE---AEIAPPQHYQIEIERGAE-LYLS 260 (285)
T ss_dssp ----GGHHHHHHHTTTTTTSEEEEEEEEEETTE----EEEEEEEEEESS---CC---CCCCCCHHHHHHHHHHHH-HHSC
T ss_pred ----HHHHHHHHhhCCCCCceEEEEEEEEECCC----CEEEEEEEEecC---CC---CCCCCHHHHHHHHHHHHh-cCCC
Confidence 578999999983 59999999987653 235799999988 55 357889999999999999 9999
Q ss_pred HHHHHHHHHHHHhcCCCcc
Q 030546 151 RDYLFKLEKAMFDIGEPLF 169 (175)
Q Consensus 151 ~eYl~~l~~~L~~lgi~~~ 169 (175)
.||+.+|+++++.++-++.
T Consensus 261 ~~Y~~~l~~~~~~~~~~~~ 279 (285)
T 2qik_A 261 PEFTEKLKRHMNSLPKGLE 279 (285)
T ss_dssp HHHHHHHHHHHHHSCCC--
T ss_pred HHHHHHHHHHHhhhhhhhh
Confidence 9999999999999887654
No 3
>2jqv_A AT3G28950, AIG2 protein-like; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana}
Probab=99.80 E-value=1.4e-19 Score=141.16 Aligned_cols=134 Identities=14% Similarity=0.092 Sum_probs=98.2
Q ss_pred CcceEEEecccccCCCCCC-----CeeeeeEEeceEEEEEeecccCCCCCCCCceEEEEEeCCCCeEEEEEEE-eeCCcc
Q 030546 1 MVFWVFGYGSLVWNPGFEY-----DEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYC-VRGGPE 74 (175)
Q Consensus 1 ~~~wvFgYGSLmw~p~f~~-----~e~~~a~l~Gy~R~F~~~s~~~RGt~e~PG~v~tL~~~~g~~~~Gvay~-v~~~~~ 74 (175)
|.+|||+||||||.+.+++ ....+|+|+||+|.|++. ...|++| +++++.|+|++|+ ++
T Consensus 7 ~~~~vFvYGSL~~~~~~~~~~~~~~~~~~a~l~Gy~~~~~~~-------~~yP~lv----~~~~~~V~G~v~~~v~---- 71 (165)
T 2jqv_A 7 QSHNVFVYGSILEPAVAAVILDRTADTVPAVLHGYHRYKLKG-------LPYPCIV----SSDSGKVNGKVITGVS---- 71 (165)
T ss_dssp SCEEEEESSTTSSHHHHHHHTSSCCEEEEEEEETCEECCCTT-------SSSCCEE----SCCSSEEEEEEEEEEC----
T ss_pred CceEEEEEcCCCCchhhHHHhCCCCccceEEEeCeEEEecCC-------CCCCEEE----ECCCCEEEEEEEEeCC----
Confidence 5789999999999998764 577999999999999743 2567655 4678999999997 66
Q ss_pred hHHHHHHHHHHHhhcCCCceeEEEEecCCCCCCceeEEEEEEEecCCCCCcCccCCCCHHHHHHHHHhccCCCCCCHHHH
Q 030546 75 KERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYL 154 (175)
Q Consensus 75 ~~~~~l~~Ld~RE~~~y~~~~v~v~~~~~~~~~~~~~al~yv~~~~~~~~~~y~g~~~~~~~a~~I~~a~G~~G~n~eYl 154 (175)
++.++.||.||+..|.+..|+|...++. ..+.|++|+.+++ .++.-.|.-++++..+.= -.+|+
T Consensus 72 --~~~l~~LD~~E~~~Y~R~~v~v~~~dg~---~~~~a~vYv~~~~--~~~i~~G~W~~~~~~~~~---------~~~~~ 135 (165)
T 2jqv_A 72 --DAELNNFDVIEGNDYERVTVEVVRMDNS---EKVKVETYVWVNK--DDPRMYGEWDFEEWRVVH---------AEKFV 135 (165)
T ss_dssp --HHHHHHHHHTTTTSEEEEEEEEEETTTT---EEEEEEEEEETTT--TSCCSCSCCCHHHHHHHH---------HHHHH
T ss_pred --HHHHHHHHHhccCCcEEEEEEEEECCCC---eEEEEEEEEECCC--cccccCCCcCHHHHHHHH---------HHHHH
Confidence 4789999999999999999999876542 2246999999762 234344666666654331 25666
Q ss_pred HHHHHHHHhcC
Q 030546 155 FKLEKAMFDIG 165 (175)
Q Consensus 155 ~~l~~~L~~lg 165 (175)
..+...+..++
T Consensus 136 ~~t~~~~~~~~ 146 (165)
T 2jqv_A 136 ETFRKMLEWNK 146 (165)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 55555555443
No 4
>2g0q_A AT5G39720.1 protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana}
Probab=99.73 E-value=9.3e-18 Score=132.17 Aligned_cols=137 Identities=20% Similarity=0.228 Sum_probs=101.5
Q ss_pred cceEEEecccccCCCCCC-----CeeeeeEEeceEEEEEeecccCCCCCCCCceEEEEEeCCCCeEEEEEEE-eeCCcch
Q 030546 2 VFWVFGYGSLVWNPGFEY-----DEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYC-VRGGPEK 75 (175)
Q Consensus 2 ~~wvFgYGSLmw~p~f~~-----~e~~~a~l~Gy~R~F~~~s~~~RGt~e~PG~v~tL~~~~g~~~~Gvay~-v~~~~~~ 75 (175)
++|||+||||||.+.++. ....+|+|+||+| |+.. | ...|+ |++++++.|+|++|. ++
T Consensus 17 ~~~vFvYGSL~~~~~~~~~l~~~~~~~~A~l~Gy~l-~~~~-----~-~~yP~----lv~~~g~~V~G~v~~~v~----- 80 (173)
T 2g0q_A 17 LHNVFVYGSFQDPDVINVMLDRTPEIVSATLPGFQR-FRLK-----G-RLYPC----IVPSEKGEVHGKVLMGVT----- 80 (173)
T ss_dssp SEEEEECSGGGCHHHHHHHTSSCCEEEEEEEETCEE-CCCC-----S-SSCCC----EECCTTCEEEEEEEEEEC-----
T ss_pred CEEEEEEcCCCCCccCHHHhcCCCceeEEEEcCeEE-EeeC-----C-CeeeE----EEECCCCEEEEEEEEEcC-----
Confidence 589999999999996542 4569999999996 4331 1 23564 555678899999875 76
Q ss_pred HHHHHHHHHHHhhcCCCceeEEEEecCCCCCCceeEEEEEEEecCCCCCcCccCCCCHHHHHHHHHhccCCCCCCHHHHH
Q 030546 76 ERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLF 155 (175)
Q Consensus 76 ~~~~l~~Ld~RE~~~y~~~~v~v~~~~~~~~~~~~~al~yv~~~~~~~~~~y~g~~~~~~~a~~I~~a~G~~G~n~eYl~ 155 (175)
++.++.||.+|+..|.+..|+|...++.. .+.|++|+.+++ ..+++.+..+.++-.+.- ...|+.
T Consensus 81 -~~~l~~LD~~Eg~~Y~R~~v~V~~~dg~~---~v~A~vYv~~~~--~~~~~~~~~~~~~W~~~~---------~~~~~~ 145 (173)
T 2g0q_A 81 -SDELENLDAVEGNEYERVTVGIVREDNSE---KMAVKTYMWINK--ADPDMFGEWNFEEWKRLH---------KKKFIE 145 (173)
T ss_dssp -HHHHHHHHHHHTTTEEEEEEEEEESSSSC---EEEEEEEEESCS--SCSSSCCCCHHHHHHHHH---------HHHHHH
T ss_pred -HHHHHHHHHHhhcCCEEEEEEEEECCCCe---EEEEEEEEEcCc--cccccCCCcCHHHHHHHh---------HHHHHH
Confidence 47899999999999999999998765321 357999999872 235677777777665442 267888
Q ss_pred HHHHHHHhcCCCcc
Q 030546 156 KLEKAMFDIGEPLF 169 (175)
Q Consensus 156 ~l~~~L~~lgi~~~ 169 (175)
...+.++..+-++.
T Consensus 146 ~~~~~m~~~~~p~~ 159 (173)
T 2g0q_A 146 TFKKIMECKKKPQG 159 (173)
T ss_dssp HHHHHHHHHTCCC-
T ss_pred HHHHHHHhccCCCC
Confidence 88888888776643
No 5
>1xhs_A Hypothetical UPF0131 protein YTFP; structure, autostructure, northeast structural genomics consortium, NESG, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.269.1.1
Probab=98.89 E-value=7.6e-09 Score=76.67 Aligned_cols=88 Identities=16% Similarity=0.147 Sum_probs=65.1
Q ss_pred ceEEEecccccCCCCCC-----CeeeeeEEeceEEEEEeecccCCCCCCCCceEEEEEeCCCCeEEEEEEEeeCCcchHH
Q 030546 3 FWVFGYGSLVWNPGFEY-----DEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKER 77 (175)
Q Consensus 3 ~wvFgYGSLmw~p~f~~-----~e~~~a~l~Gy~R~F~~~s~~~RGt~e~PG~v~tL~~~~g~~~~Gvay~v~~~~~~~~ 77 (175)
+.||.|||||-...... .-..+|+++||++.+. | ..|+.+. .++ .|+|.+|.|+.
T Consensus 1 ~~vFvYGTL~~g~~~~~~l~~a~~~g~a~l~gy~L~~~-------g--~yP~lv~----~~g-~V~Gevy~v~~------ 60 (121)
T 1xhs_A 1 MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSL-------G--HYPGAVP----GNG-TVHGEVYRIDN------ 60 (121)
T ss_dssp CEEEECSCTTCCCTTTHHHHTCEEEEEEEEEEEEEEEC-------S--SSEEEEE----EEE-EEEEEEEECCH------
T ss_pred CEEEEECCCCCcccchhhcCCCcEEEEEEEeCcEEEEe-------c--CCCeEEe----cCC-EEEEEEEEeCH------
Confidence 46999999997665532 2235699999988754 1 3577664 334 99999999973
Q ss_pred HHHHHHHHHhh--cCCCceeEEEEecCCCCCCceeEEEEEEEec
Q 030546 78 LAMEYLERREC--EYDSKTLVDFYREGEPSQPALTGVIVFTSTP 119 (175)
Q Consensus 78 ~~l~~Ld~RE~--~~y~~~~v~v~~~~~~~~~~~~~al~yv~~~ 119 (175)
+.++.||.-|. ..|.|..|++ .+ ..|++|+..+
T Consensus 61 ~~l~~LD~~Eg~~~~Y~R~~v~~--~~-------g~a~vY~~~~ 95 (121)
T 1xhs_A 61 ATLAELDALRTRGGEYARQLIQT--PY-------GSAWMYVYQR 95 (121)
T ss_dssp HHHHHHHHHHSTTSCEEEEEEEE--TT-------EEEEEEEECS
T ss_pred HHHHHHHHhcCCCCCEEEEEEEc--CC-------CEEEEEEECC
Confidence 78999999997 5788887773 22 2589999865
No 6
>1v30_A Hypothetical UPF0131 protein PH0828; alpha+beta, structural genomics, unknown function; HET: NHE; 1.40A {Pyrococcus horikoshii} SCOP: d.269.1.1
Probab=98.87 E-value=4.8e-09 Score=78.14 Aligned_cols=89 Identities=12% Similarity=0.008 Sum_probs=62.9
Q ss_pred CcceEEEecccccCCCCCC-----CeeeeeEEeceEEEEEeecccCCCCCCCCceEEEEEeCCCCeEEEEEEEeeCCcch
Q 030546 1 MVFWVFGYGSLVWNPGFEY-----DEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEK 75 (175)
Q Consensus 1 ~~~wvFgYGSLmw~p~f~~-----~e~~~a~l~Gy~R~F~~~s~~~RGt~e~PG~v~tL~~~~g~~~~Gvay~v~~~~~~ 75 (175)
|.+.||.|||||-...... .-..+|.+.||++. . | . .|+.+. .++ .|+|.+|.|+.
T Consensus 6 ~~~~vFVYGTL~~g~~n~~~l~~a~~~g~a~l~gy~L~--~------g-~-yP~lv~----~~g-~V~Gev~~v~~---- 66 (124)
T 1v30_A 6 KSVRIAVYGTLRKGKPLHWYLKGAKFLGEDWIEGYQLY--F------E-Y-LPYAVK----GKG-KLKVEVYEVDK---- 66 (124)
T ss_dssp -CEEEEECSTTSTTSTTGGGGTTSEEEEEEEEEEEEEE--E------S-S-SEEEEE----EEE-EEEEEEEEECH----
T ss_pred CccEEEEECCCCCchHhHHhcCCCcEEEEEEEeeEEEE--E------C-C-CCEEEe----cCC-EEEEEEEEECH----
Confidence 5678999999997776542 22366889999887 2 2 1 676664 334 49999999983
Q ss_pred HHHHHHHHHHHh-hcCCCceeEEEEecCCCCCCceeEEEEEEEec
Q 030546 76 ERLAMEYLERRE-CEYDSKTLVDFYREGEPSQPALTGVIVFTSTP 119 (175)
Q Consensus 76 ~~~~l~~Ld~RE-~~~y~~~~v~v~~~~~~~~~~~~~al~yv~~~ 119 (175)
+.++.||..| ...|.|..|. ..++ .|++|+..+
T Consensus 67 --~~l~~LD~~E~~~~Y~R~~V~--~~~g-------~A~vY~~~~ 100 (124)
T 1v30_A 67 --ETFERINEIEIGTGYRLVEVS--TKFG-------KAFLWEWGS 100 (124)
T ss_dssp --HHHHHHTTCGGGGGEEEEEEC--CTTS-------CEEEEEECS
T ss_pred --HHHHHhhhccCCCCeEEEEEE--cCCC-------EEEEEEeCC
Confidence 7899999999 6678776543 2222 289999865
No 7
>3jud_A AIG2-like domain-containing protein 1; cyclotransferase, gamma-glutamylamine cyclotransferase, gamma-glutamyl-epsilon-lysine; 0.98A {Homo sapiens} SCOP: d.269.1.1 PDB: 3jub_A 3juc_A
Probab=98.77 E-value=2.1e-08 Score=77.26 Aligned_cols=107 Identities=15% Similarity=0.187 Sum_probs=68.1
Q ss_pred ceEEEecccccCCCCC-C-C--eeeeeEEeceEEEEEeecccCCCCCCCCceEE------EEE--eCCCCeEEEEEEEee
Q 030546 3 FWVFGYGSLVWNPGFE-Y-D--EKILGFIKDYRRVFDLACIDHRGTPQHPARTC------TLE--KSQETICWGVAYCVR 70 (175)
Q Consensus 3 ~wvFgYGSLmw~p~f~-~-~--e~~~a~l~Gy~R~F~~~s~~~RGt~e~PG~v~------tL~--~~~g~~~~Gvay~v~ 70 (175)
..||-||+|+-...-+ + . ....|.+.|-.+.. ...|+.++ .|. +..|+.|+|.+|.|+
T Consensus 2 ~~vFVYGTL~~G~~Nh~~l~~~~~~~A~~~G~~~t~----------~~Ypl~~~g~~~~P~l~~~p~~g~~V~G~ly~v~ 71 (153)
T 3jud_A 2 ALVFVYGTLKRGQPNHRVLRDGAHGSAAFRARGRTL----------EPYPLVIAGEHNIPWLLHLPGSGRLVEGEVYAVD 71 (153)
T ss_dssp EEEEECSTTSTTSTTGGGGTCGGGCCEEEEEEEEES----------SCBCEEEETTTTEEEEBSCTTSSBCCEEEEEEEC
T ss_pred CEEEEeCCCCCCCcChHHHhcCcCCCeEEEEEEEeC----------CCccEEEecCCCCceEEecCCCCCEEEEEEEEEC
Confidence 4699999998544322 1 1 12346666654321 22343332 222 223568999999998
Q ss_pred CCcchHHHHHHHHHHHhh--cCCCceeEEEEecCC-------CCCCceeEEEEEEEecCCCCCcCcc
Q 030546 71 GGPEKERLAMEYLERREC--EYDSKTLVDFYREGE-------PSQPALTGVIVFTSTPDKVSNKYYL 128 (175)
Q Consensus 71 ~~~~~~~~~l~~Ld~RE~--~~y~~~~v~v~~~~~-------~~~~~~~~al~yv~~~~~~~~~~y~ 128 (175)
+ +.|+.||+.|. ..|.|..++|...+. ......+.|++|+.+. -++.+.
T Consensus 72 ~------~~l~~LD~~Eg~~~~Y~R~~v~V~~~~~~~~~~~~~~~g~~v~A~vYv~~~---~~~~~~ 129 (153)
T 3jud_A 72 E------RMLRFLDDFQSCPALYQRTVLRVQLLEDRAPGAEEPPAPTAVQCFVYSRAT---FPPEWA 129 (153)
T ss_dssp H------HHHHHHHHHTTTTTSCEEEEEEEEEEC------CCSCCCCEEEEEEEEBCC---CCGGGG
T ss_pred H------HHHHHHHHhcCCCCceEEEEEEEEeeccccccccccCCCCEEEEEEEEcCC---CCcccc
Confidence 3 79999999998 689999999977521 0112346899999987 555554
No 8
>1vkb_A Hypothetical protein; gamma-glutamyl cyclotransferase-like fold, structural genomi center for structural genomics, JCSG, protein structure INI PSI; 1.90A {Mus musculus} SCOP: d.269.1.1 PDB: 2kl2_A
Probab=98.72 E-value=1.9e-09 Score=83.71 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=78.4
Q ss_pred cceEEEecccccCCC-CCC-C------ee--eee-EEeceEEEEEeecccCCCCCCCCceEEEEEeCCCCeEEEEEEEee
Q 030546 2 VFWVFGYGSLVWNPG-FEY-D------EK--ILG-FIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVR 70 (175)
Q Consensus 2 ~~wvFgYGSLmw~p~-f~~-~------e~--~~a-~l~Gy~R~F~~~s~~~RGt~e~PG~v~tL~~~~g~~~~Gvay~v~ 70 (175)
+..||-||+|+=... ... . .+ ..+ ++.||.-.|.-. ...| .++++|.+|+.|+|.+|.|+
T Consensus 13 ~~~vFVYGTLk~G~~Nh~~l~~~r~~~A~~~G~~~tl~~YpL~~~g~-------~~~p--~~~i~p~~g~~V~Gevy~v~ 83 (161)
T 1vkb_A 13 MAHIFVYGTLKRGQPNHKVMLDHSHGLAAFRGRGCTVESFPLVIAGE-------HNIP--WLLYLPGKGHCVTGEIYEVD 83 (161)
T ss_dssp CEEEEECSTTSTTSTTTHHHHCGGGCCEEEEEEEEESSCBCEEEETT-------TTEE--EEESCTTSSBCCEEEEEEEC
T ss_pred ceEEEEcCCCCCCCcChHHHhhCcCCCceEEEEEeecCCceEEEecC-------CCcc--eeEeecCCCCEEEEEEEEEC
Confidence 357999999982221 111 1 11 223 455666666521 1122 36667777789999999998
Q ss_pred CCcchHHHHHHHHHHHhh--cCCCceeEEEEe-------cCCCCCCceeEEEEEEEecCCCCCcCccCCCCHHHHHHHHH
Q 030546 71 GGPEKERLAMEYLERREC--EYDSKTLVDFYR-------EGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIA 141 (175)
Q Consensus 71 ~~~~~~~~~l~~Ld~RE~--~~y~~~~v~v~~-------~~~~~~~~~~~al~yv~~~~~~~~~~y~g~~~~~~~a~~I~ 141 (175)
. +.|+.||.-|. +.|.|..|+|.. .++ ..+.|++|+.+. .. ..+|-..+.. |.
T Consensus 84 ~------~~L~~LD~~Eg~p~~Y~R~~v~V~~~~~~~~~~~g----~~v~A~vYv~~~---~~----~~lps~~Yl~-i~ 145 (161)
T 1vkb_A 84 E------QMLRFLDDFEDCPSMYQRTALQVQVLEWEGDGDPG----DSVQCFVYTTAT---YA----PEWLFLPYHE-SY 145 (161)
T ss_dssp H------HHHHHHHHHTTTTTSCEEEEEEEEEEEEC----CC----SEEEEEEEEESC---CC----GGGGGSCCCS-SC
T ss_pred H------HHHHHHHHhcCCCCceEEEEEEEEecccccccCCC----CEEEEEEEEcCC---CC----ccCCChhHHH-HH
Confidence 3 78999999997 579998898876 222 236799999865 22 2234455555 66
Q ss_pred hccCCCCCCHHHH
Q 030546 142 TAVGPCGNNRDYL 154 (175)
Q Consensus 142 ~a~G~~G~n~eYl 154 (175)
.+.+..|. +|+
T Consensus 146 ~ga~~~gl--~Yv 156 (161)
T 1vkb_A 146 DSEGPHGL--RYN 156 (161)
T ss_dssp CTTSTTCC--CCC
T ss_pred hhHHHhCC--Ccc
Confidence 66666665 554
No 9
>2qik_A UPF0131 protein YKQA; NESG, SR631, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CIT; 1.35A {Bacillus subtilis}
Probab=98.30 E-value=4.3e-06 Score=69.81 Aligned_cols=93 Identities=15% Similarity=0.147 Sum_probs=64.1
Q ss_pred CcceEEEecccccCCCCCC----C--eeeeeEEeceEEEEEeecccCCCCCCCCceEEEEEeCCCCeEEEEEEEeeCCcc
Q 030546 1 MVFWVFGYGSLVWNPGFEY----D--EKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPE 74 (175)
Q Consensus 1 ~~~wvFgYGSLmw~p~f~~----~--e~~~a~l~Gy~R~F~~~s~~~RGt~e~PG~v~tL~~~~g~~~~Gvay~v~~~~~ 74 (175)
|+..||-|||||=....+. . ...+|+++| |-+..+ ..||++. .+.+++.|.|-+|.|+.
T Consensus 1 m~~~vFVYGTL~~g~~n~~~l~~~~~~~~~~~~~g--~L~~~g--------~~P~lv~--~~~~~~~V~Gev~~v~~--- 65 (285)
T 2qik_A 1 MNSLLFVYGTLRKHEKNHHLLAQSACINEQARTKG--SLFAAK--------EGPTVVF--NDEDEGYIYGEVYEADE--- 65 (285)
T ss_dssp CCEEEEECSTTSTTSTTGGGGTTCEEEEEEEEEES--EEEEC----------CEEEEC--CTTCCSEEEEEEEEECH---
T ss_pred CCcEEEEECCCCCCCcChHHhCCCeEeeeeEEEEE--EEEEcC--------CCCeEEE--ccCCCCEEEEEEEEcCH---
Confidence 7889999999996554332 1 135678876 444322 1476553 12247899999999982
Q ss_pred hHHHHHHHHHHHhh--cCCCceeEEEEecCCCCCCceeEEEEEEEec
Q 030546 75 KERLAMEYLERREC--EYDSKTLVDFYREGEPSQPALTGVIVFTSTP 119 (175)
Q Consensus 75 ~~~~~l~~Ld~RE~--~~y~~~~v~v~~~~~~~~~~~~~al~yv~~~ 119 (175)
+ .||.-|. +.|.|..++|...++ .+.|++|+.++
T Consensus 66 ---~---~LD~~E~~~~~Y~R~~v~v~~~~g-----~~~a~vY~~~~ 101 (285)
T 2qik_A 66 ---L---CIHKLDQFFQGYHKQTVFVETDVG-----IKIALIYFMNK 101 (285)
T ss_dssp ---H---HHHHHHHHSTTCEEEEEEEEETTE-----EEEEEEEECC-
T ss_pred ---H---HhHHhcCCCCceeEEEEEEEcCCC-----EEEEEEEEecc
Confidence 2 8999997 689999999887653 25799999876
No 10
>3cry_A Gamma-glutamyl cyclotransferase; enzyme, oxoproline; 1.70A {Homo sapiens} PDB: 2pn7_A 2rbh_A 2i5t_A* 2q53_A
Probab=50.09 E-value=6.7 Score=29.84 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCcccccc
Q 030546 147 CGNNRDYLFKLEKAMFDIGEPLFLTQN 173 (175)
Q Consensus 147 ~G~n~eYl~~l~~~L~~lgi~~~~~~~ 173 (175)
..|+.+||..+++++++.|+.++++++
T Consensus 133 ~~ps~~Yl~~i~~g~~~~gl~~~y~~~ 159 (188)
T 3cry_A 133 APPSPQYKKIICMGAKENGLPLEYQEK 159 (188)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhCcCHHHHHH
Confidence 679999999999999999999988765
No 11
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=30.38 E-value=41 Score=28.20 Aligned_cols=43 Identities=7% Similarity=-0.190 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCccccc
Q 030546 130 PAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGEPLFLTQ 172 (175)
Q Consensus 130 ~~~~~~~a~~I~~a~G~~G~n~eYl~~l~~~L~~lgi~~~~~~ 172 (175)
..+.++++++|.++-...+.+.+=|....+.|+++|+...-+.
T Consensus 89 Gls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~lGl~~~~i~ 131 (335)
T 4fp9_B 89 GLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLK 131 (335)
T ss_dssp TCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHTTCTTTTHH
T ss_pred CCCHHHHHHHHHhChhhccCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 3789999999999999999999999999999999999876543
No 12
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=26.94 E-value=71 Score=22.02 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 030546 130 PAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGE 166 (175)
Q Consensus 130 ~~~~~~~a~~I~~a~G~~G~n~eYl~~l~~~L~~lgi 166 (175)
+.+.+++|+.+ |-+..++.++.+.|++.|+
T Consensus 26 ~~s~~ela~~~-------~i~~~~v~~il~~L~~~Gl 55 (129)
T 2y75_A 26 PTSLKSIAQTN-------NLSEHYLEQLVSPLRNAGL 55 (129)
T ss_dssp CBCHHHHHHHT-------TSCHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCc
Confidence 56777777763 7899999999999999997
No 13
>3vjz_A DMP19, putative uncharacterized protein; helix bundle, DNA mimic, gene regulation; 1.80A {Neisseria meningitidis}
Probab=23.46 E-value=42 Score=25.61 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=22.5
Q ss_pred HHHHHhccCCCCCCHHHHHH--HHHHHHhcCCCcc
Q 030546 137 ARQIATAVGPCGNNRDYLFK--LEKAMFDIGEPLF 169 (175)
Q Consensus 137 a~~I~~a~G~~G~n~eYl~~--l~~~L~~lgi~~~ 169 (175)
.+-|.++.| +|++. ++++||.+|+++.
T Consensus 65 vQLI~NGyG------~~if~Np~akalr~wG~~~l 93 (166)
T 3vjz_A 65 VQLIASGYG------EYIFRNPLADSLRRWKIKAV 93 (166)
T ss_dssp HHHHHHSCH------HHHHTSSHHHHHHTTTCCHH
T ss_pred HhhhhcCch------hHHHhChHHHHHHHhCchhH
Confidence 466887777 89997 9999999999864
No 14
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=20.33 E-value=1.1e+02 Score=24.60 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCC
Q 030546 129 GPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGEP 167 (175)
Q Consensus 129 g~~~~~~~a~~I~~a~G~~G~n~eYl~~l~~~L~~lgi~ 167 (175)
|+.+.+++|+.+ |.+.++|.++.++|-.+|+=
T Consensus 54 g~~t~~elA~~~-------g~~~~~l~rlLr~l~~~g~l 85 (348)
T 3lst_A 54 GPRTPAELAAAT-------GTDADALRRVLRLLAVRDVV 85 (348)
T ss_dssp SCBCHHHHHHHH-------TCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCHHHHHHHh-------CcCHHHHHHHHHHHHhCCCE
Confidence 578888888775 56889999999999999974
No 15
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=20.03 E-value=1.2e+02 Score=24.14 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCc
Q 030546 129 GPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGEPL 168 (175)
Q Consensus 129 g~~~~~~~a~~I~~a~G~~G~n~eYl~~l~~~L~~lgi~~ 168 (175)
|+.+.+++|+.+ |.+.++|.++.+.|..+|+-.
T Consensus 37 g~~t~~elA~~~-------~~~~~~l~rlLr~l~~~gl~~ 69 (332)
T 3i53_A 37 GHRTAAEIASAA-------GAHADSLDRLLRHLVAVGLFT 69 (332)
T ss_dssp TCCBHHHHHHHH-------TCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHH-------CcCHHHHHHHHHHHHhCCcEE
Confidence 578888888765 468899999999999999843
Done!