Query 030547
Match_columns 175
No_of_seqs 159 out of 598
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 01:10:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030547.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030547hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jfi_B DR1 protein, transcript 100.0 1E-31 3.4E-36 219.5 11.7 98 26-124 9-106 (179)
2 2byk_B Chrac-14; nucleosome sl 100.0 1.9E-31 6.6E-36 207.2 11.6 104 26-129 3-106 (128)
3 1n1j_A NF-YB; histone-like PAI 100.0 2.3E-30 8E-35 189.9 11.0 92 26-117 2-93 (93)
4 3b0c_W CENP-W, centromere prot 99.9 7.7E-23 2.6E-27 145.3 7.9 69 30-99 2-70 (76)
5 1f1e_A Histone fold protein; a 99.8 2.2E-21 7.7E-26 155.1 8.3 75 31-106 3-77 (154)
6 1b67_A Protein (histone HMFA); 99.8 1.7E-19 5.9E-24 124.7 7.8 66 32-99 2-67 (68)
7 3b0c_T CENP-T, centromere prot 99.8 2.2E-19 7.7E-24 136.3 9.1 91 28-120 3-95 (111)
8 2byk_A Chrac-16; nucleosome sl 99.7 1.1E-18 3.6E-23 137.5 3.4 97 28-125 15-115 (140)
9 1f1e_A Histone fold protein; a 99.7 3.2E-17 1.1E-21 131.0 9.6 73 25-99 75-147 (154)
10 4g92_C HAPE; transcription fac 99.7 1.7E-16 5.6E-21 121.5 7.5 78 27-105 36-113 (119)
11 1id3_B Histone H4; nucleosome 99.6 3.8E-16 1.3E-20 116.9 8.4 78 25-104 21-98 (102)
12 1n1j_B NF-YC; histone-like PAI 99.6 3E-16 1E-20 115.9 7.4 80 26-106 13-92 (97)
13 2hue_C Histone H4; mini beta s 99.6 3.7E-16 1.3E-20 112.9 6.8 77 26-104 4-80 (84)
14 1ku5_A HPHA, archaeal histon; 99.6 3.6E-15 1.2E-19 103.8 7.8 64 32-97 6-69 (70)
15 1tzy_D Histone H4-VI; histone- 99.6 5.1E-15 1.8E-19 110.5 8.5 78 25-104 22-99 (103)
16 2yfw_B Histone H4, H4; cell cy 99.6 7.2E-15 2.5E-19 109.8 7.6 77 26-104 23-99 (103)
17 1jfi_A Transcription regulator 99.3 1.3E-12 4.3E-17 96.8 5.4 78 30-108 9-86 (98)
18 2hue_B Histone H3; mini beta s 99.1 1.4E-10 4.9E-15 83.1 7.7 71 30-100 1-74 (77)
19 2yfv_A Histone H3-like centrom 99.0 6.4E-10 2.2E-14 83.2 7.0 72 26-97 21-98 (100)
20 3nqj_A Histone H3-like centrom 99.0 8.7E-10 3E-14 79.9 7.2 70 31-100 2-76 (82)
21 3r45_A Histone H3-like centrom 98.9 1.4E-09 4.7E-14 87.1 7.1 72 27-98 72-148 (156)
22 3nqu_A Histone H3-like centrom 98.9 1.4E-09 4.9E-14 85.7 6.7 75 27-101 56-135 (140)
23 1tzy_C Histone H3; histone-fol 98.9 2.2E-09 7.5E-14 84.2 7.2 74 27-100 57-133 (136)
24 4dra_A Centromere protein S; D 98.8 1.4E-08 4.9E-13 77.4 7.7 77 37-119 32-109 (113)
25 3vh5_A CENP-S; histone fold, c 98.8 1E-08 3.6E-13 80.8 6.8 75 37-117 24-99 (140)
26 1taf_B TFIID TBP associated fa 98.7 4.5E-08 1.5E-12 68.9 8.3 65 31-97 5-69 (70)
27 3v9r_A MHF1, uncharacterized p 98.7 4.9E-08 1.7E-12 71.7 7.4 62 37-98 17-79 (90)
28 3b0b_B CENP-S, centromere prot 98.7 6.5E-08 2.2E-12 73.1 7.5 75 37-117 24-99 (107)
29 1f66_C Histone H2A.Z; nucleoso 98.4 8.1E-07 2.8E-11 68.8 8.2 70 29-98 24-93 (128)
30 2nqb_C Histone H2A; nucleosome 98.4 9.6E-07 3.3E-11 67.9 8.2 69 29-98 20-88 (123)
31 1taf_A TFIID TBP associated fa 98.4 1.7E-06 5.7E-11 60.5 8.3 61 36-98 5-65 (68)
32 1tzy_A Histone H2A-IV; histone 98.4 1.2E-06 4.1E-11 67.9 8.2 69 29-98 22-90 (129)
33 1id3_C Histone H2A.1; nucleoso 98.4 1.1E-06 3.9E-11 68.2 7.6 69 29-98 22-90 (131)
34 2f8n_G Core histone macro-H2A. 98.4 1.5E-06 5E-11 66.6 8.1 69 29-98 19-87 (120)
35 2ly8_A Budding yeast chaperone 98.3 9.1E-07 3.1E-11 68.1 6.6 53 51-103 64-116 (121)
36 2f8n_K Histone H2A type 1; nuc 98.3 1.9E-06 6.6E-11 68.4 8.0 69 29-98 41-109 (149)
37 2nqb_D Histone H2B; nucleosome 98.3 2.6E-06 8.9E-11 65.8 7.7 63 36-99 37-99 (123)
38 1tzy_B Histone H2B; histone-fo 98.2 3.2E-06 1.1E-10 65.5 7.7 62 37-99 41-102 (126)
39 2jss_A Chimera of histone H2B. 98.2 5.8E-06 2E-10 67.4 8.0 70 29-98 102-171 (192)
40 2l5a_A Histone H3-like centrom 98.1 4.9E-06 1.7E-10 70.3 6.8 72 29-100 8-85 (235)
41 2l5a_A Histone H3-like centrom 98.0 3.5E-06 1.2E-10 71.2 4.4 59 40-100 169-227 (235)
42 4dra_E Centromere protein X; D 98.0 3.2E-05 1.1E-09 56.1 8.8 70 30-99 10-80 (84)
43 2jss_A Chimera of histone H2B. 98.0 2.7E-05 9.3E-10 63.4 8.3 63 36-99 7-69 (192)
44 3b0b_C CENP-X, centromere prot 97.9 5.4E-05 1.9E-09 54.4 8.5 73 27-99 3-76 (81)
45 1h3o_B Transcription initiatio 97.8 0.00018 6E-09 51.2 8.7 66 32-98 5-70 (76)
46 1bh9_B TAFII28; histone fold, 97.5 0.00063 2.2E-08 49.5 8.3 67 32-100 16-83 (89)
47 2ly8_A Budding yeast chaperone 96.8 0.0038 1.3E-07 47.9 7.4 84 32-117 1-93 (121)
48 3v9r_B MHF2, uncharacterized p 96.5 0.005 1.7E-07 44.9 5.9 48 32-79 1-49 (88)
49 3uk6_A RUVB-like 2; hexameric 91.9 0.33 1.1E-05 40.1 6.4 66 33-98 259-329 (368)
50 1fnn_A CDC6P, cell division co 86.3 3.3 0.00011 33.8 8.4 76 33-108 193-283 (389)
51 2c9o_A RUVB-like 1; hexameric 86.1 1.3 4.5E-05 38.7 6.2 66 33-98 366-436 (456)
52 3ksy_A SOS-1, SON of sevenless 84.6 3.2 0.00011 40.7 8.7 66 30-97 102-167 (1049)
53 2v1u_A Cell division control p 84.1 2.7 9.3E-05 34.2 6.9 67 35-101 203-278 (387)
54 1k6k_A ATP-dependent CLP prote 83.5 2.9 9.8E-05 30.3 6.2 33 52-96 2-34 (143)
55 3kw6_A 26S protease regulatory 81.3 1.6 5.3E-05 29.2 3.7 43 57-99 27-73 (78)
56 2qby_A CDC6 homolog 1, cell di 80.7 5.2 0.00018 32.3 7.3 75 33-107 197-280 (386)
57 1khy_A CLPB protein; alpha hel 80.6 4.3 0.00015 29.4 6.2 38 51-100 5-42 (148)
58 2y1q_A CLPC N-domain, negative 78.2 3.4 0.00012 30.2 5.0 38 51-100 5-42 (150)
59 3fh2_A Probable ATP-dependent 77.4 3.1 0.00011 30.7 4.6 37 51-99 6-42 (146)
60 3k1j_A LON protease, ATP-depen 75.7 15 0.00052 33.3 9.5 49 50-98 313-374 (604)
61 2dzn_B 26S protease regulatory 73.9 3.5 0.00012 27.8 3.8 30 71-100 40-69 (82)
62 3vlf_B 26S protease regulatory 73.9 3.6 0.00012 28.4 3.8 34 68-101 40-73 (88)
63 3fes_A ATP-dependent CLP endop 73.3 6.6 0.00023 28.9 5.5 38 51-100 7-44 (145)
64 2r44_A Uncharacterized protein 73.0 18 0.00063 29.3 8.6 51 49-99 224-297 (331)
65 3aji_B S6C, proteasome (prosom 72.6 3.4 0.00012 27.7 3.4 33 68-100 40-72 (83)
66 2krk_A 26S protease regulatory 71.6 4 0.00014 28.2 3.7 32 68-99 50-81 (86)
67 1g8p_A Magnesium-chelatase 38 68.7 14 0.00047 29.8 6.8 51 49-99 265-322 (350)
68 2qby_B CDC6 homolog 3, cell di 65.4 11 0.00036 30.9 5.6 67 33-101 197-272 (384)
69 2chg_A Replication factor C sm 61.7 13 0.00043 27.1 4.9 63 33-97 161-224 (226)
70 3zri_A CLPB protein, CLPV; cha 60.6 7.6 0.00026 30.1 3.7 37 51-99 24-60 (171)
71 3fes_A ATP-dependent CLP endop 57.5 16 0.00053 26.8 4.8 39 50-100 80-118 (145)
72 1in4_A RUVB, holliday junction 56.8 35 0.0012 28.2 7.3 68 36-103 183-254 (334)
73 2i7a_A Calpain 13; calcium-dep 56.6 59 0.002 24.2 10.1 28 74-102 80-111 (174)
74 3fh2_A Probable ATP-dependent 56.0 33 0.0011 25.0 6.4 39 50-100 80-118 (146)
75 5pal_A Parvalbumin; calcium-bi 56.0 41 0.0014 22.2 6.5 72 33-115 6-89 (109)
76 3h4m_A Proteasome-activating n 55.5 19 0.00065 28.3 5.3 33 67-99 226-258 (285)
77 3bos_A Putative DNA replicatio 52.3 27 0.00093 25.9 5.5 61 35-97 176-241 (242)
78 1k6k_A ATP-dependent CLP prote 52.3 40 0.0014 24.0 6.2 37 50-98 78-114 (143)
79 1njg_A DNA polymerase III subu 52.2 20 0.00069 26.2 4.6 63 33-96 185-248 (250)
80 1wwi_A Hypothetical protein TT 50.9 36 0.0012 26.7 6.0 58 33-92 3-60 (148)
81 3vfd_A Spastin; ATPase, microt 50.7 72 0.0025 26.7 8.4 69 34-102 283-368 (389)
82 2f3n_A SH3 and multiple ankyri 49.3 13 0.00043 24.9 2.8 23 87-109 5-27 (76)
83 4b4t_H 26S protease regulatory 49.2 11 0.00039 34.2 3.3 32 68-99 419-450 (467)
84 2kru_A Light-independent proto 48.2 15 0.00053 24.8 3.1 51 49-100 3-54 (63)
85 2zbk_B Type 2 DNA topoisomeras 46.7 11 0.00039 34.4 2.9 57 43-99 427-485 (530)
86 3pxg_A Negative regulator of g 46.6 32 0.0011 30.1 5.8 39 51-101 5-43 (468)
87 3bq7_A Diacylglycerol kinase d 46.3 15 0.00051 24.9 2.8 24 86-109 9-32 (81)
88 1r4v_A Hypothetical protein AQ 45.6 30 0.001 27.7 4.9 64 27-92 19-84 (171)
89 1lv7_A FTSH; alpha/beta domain 45.4 25 0.00086 27.3 4.4 64 37-101 186-254 (257)
90 1yfs_A Alanyl-tRNA synthetase; 45.1 62 0.0021 29.6 7.5 49 79-127 371-426 (465)
91 3fwb_A Cell division control p 45.0 72 0.0025 21.9 9.1 39 75-113 101-139 (161)
92 4b4t_I 26S protease regulatory 44.3 20 0.00068 32.4 4.1 67 31-98 350-422 (437)
93 4b4t_L 26S protease subunit RP 44.2 20 0.00069 32.0 4.1 32 67-98 390-421 (437)
94 1bu3_A Calcium-binding protein 44.2 65 0.0022 21.1 6.9 81 32-114 6-89 (109)
95 2y1q_A CLPC N-domain, negative 43.6 32 0.0011 24.8 4.5 36 51-98 79-114 (150)
96 4b4t_J 26S protease regulatory 43.5 21 0.00071 31.7 4.1 32 67-98 357-388 (405)
97 1w5s_A Origin recognition comp 42.4 1.1E+02 0.0038 24.8 8.2 68 33-100 215-294 (412)
98 4b4t_K 26S protease regulatory 42.3 19 0.00065 32.0 3.6 31 68-98 383-413 (428)
99 4b4t_M 26S protease regulatory 42.3 20 0.0007 31.9 3.8 33 67-99 390-422 (434)
100 2l09_A ASR4154 protein; proto- 41.8 17 0.00056 24.6 2.4 49 50-99 3-52 (62)
101 1hqc_A RUVB; extended AAA-ATPa 40.8 39 0.0013 26.8 5.0 70 33-102 168-241 (324)
102 2d8c_A Phosphatidylcholine:cer 40.5 13 0.00043 26.7 1.8 23 86-108 19-41 (97)
103 1tiz_A Calmodulin-related prot 39.1 58 0.002 19.1 4.6 37 77-113 8-44 (67)
104 3zri_A CLPB protein, CLPV; cha 38.5 41 0.0014 25.9 4.6 38 50-99 97-135 (171)
105 1exr_A Calmodulin; high resolu 38.3 95 0.0033 21.3 6.6 41 74-114 87-127 (148)
106 3mse_B Calcium-dependent prote 37.7 1.1E+02 0.0038 22.0 8.7 63 38-102 6-71 (180)
107 3pm8_A PFCDPK2, calcium-depend 36.9 78 0.0027 23.5 5.9 80 31-113 20-100 (197)
108 1kw4_A Polyhomeotic; SAM domai 36.2 24 0.00081 24.7 2.6 24 86-109 16-40 (89)
109 1khy_A CLPB protein; alpha hel 36.0 45 0.0016 23.8 4.3 24 74-97 93-116 (148)
110 2lmt_A Calmodulin-related prot 35.6 1.1E+02 0.0037 21.3 6.2 41 74-114 87-127 (148)
111 3pxi_A Negative regulator of g 35.5 56 0.0019 30.2 5.8 38 51-100 5-42 (758)
112 3pvs_A Replication-associated 35.4 57 0.0019 28.6 5.6 67 33-100 165-245 (447)
113 1uxc_A FRUR (1-57), fructose r 35.4 45 0.0015 21.7 3.8 35 32-67 11-45 (65)
114 2ovk_C Myosin catalytic light 35.2 77 0.0026 21.9 5.4 40 74-113 89-128 (159)
115 1sxj_D Activator 1 41 kDa subu 34.3 1.7E+02 0.0059 23.1 9.0 67 33-100 192-264 (353)
116 1rwy_A Parvalbumin alpha; EF-h 34.1 74 0.0025 20.7 4.9 79 33-113 6-87 (109)
117 1pva_A Parvalbumin; calcium bi 33.6 65 0.0022 21.1 4.5 71 33-114 7-89 (110)
118 2kz2_A Calmodulin, CAM; TR2C, 33.4 73 0.0025 21.0 4.7 36 77-112 36-71 (94)
119 3pfi_A Holliday junction ATP-d 33.3 39 0.0013 27.3 3.9 68 35-102 186-257 (338)
120 2gle_A Neurabin-1; SAM domain, 33.3 12 0.00042 24.6 0.7 22 87-108 7-28 (74)
121 2qz4_A Paraplegin; AAA+, SPG7, 32.6 18 0.00061 27.9 1.6 33 67-99 217-249 (262)
122 3b9p_A CG5977-PA, isoform A; A 32.5 98 0.0034 24.3 6.1 60 51-110 208-283 (297)
123 3h4s_E KCBP interacting Ca2+-b 32.4 58 0.002 22.8 4.3 27 75-101 45-71 (135)
124 2obh_A Centrin-2; DNA repair c 31.9 1.2E+02 0.0042 20.7 6.6 81 33-113 39-122 (143)
125 1wlz_A DJBP, CAP-binding prote 31.7 1.1E+02 0.0037 20.0 6.3 28 75-102 29-56 (105)
126 3fs7_A Parvalbumin, thymic; ca 31.6 1.1E+02 0.0037 20.0 7.5 72 32-114 6-89 (109)
127 3bow_A Calpain-2 catalytic sub 31.4 2.6E+02 0.0089 25.9 9.6 49 65-113 595-648 (714)
128 1qvr_A CLPB protein; coiled co 31.0 42 0.0014 31.7 4.1 35 51-97 5-39 (854)
129 4ds7_A Calmodulin, CAM; protei 30.2 1.2E+02 0.0042 20.2 10.1 41 75-115 89-129 (147)
130 2ktg_A Calmodulin, putative; e 29.6 1E+02 0.0035 19.1 5.4 37 76-112 20-56 (85)
131 1jr3_A DNA polymerase III subu 29.6 45 0.0015 26.9 3.7 65 32-97 177-242 (373)
132 2lv7_A Calcium-binding protein 29.6 52 0.0018 22.5 3.5 52 51-114 29-80 (100)
133 2joj_A Centrin protein; N-term 29.5 96 0.0033 18.7 5.0 25 78-102 15-39 (77)
134 2q2e_B Type 2 DNA topoisomeras 29.4 19 0.00064 33.8 1.4 70 26-98 421-492 (621)
135 1avs_A Troponin C; muscle cont 28.7 95 0.0033 19.7 4.6 38 76-113 26-63 (90)
136 3j04_B Myosin regulatory light 28.5 81 0.0028 21.2 4.4 40 75-114 81-120 (143)
137 1ixz_A ATP-dependent metallopr 28.2 42 0.0014 26.0 3.1 57 39-96 192-253 (254)
138 2qp9_X Vacuolar protein sortin 28.1 2.6E+02 0.0088 23.2 8.7 18 85-102 317-334 (355)
139 1r6b_X CLPA protein; AAA+, N-t 27.8 47 0.0016 30.5 3.8 34 52-97 2-35 (758)
140 3i5g_C Myosin catalytic light 27.7 1.3E+02 0.0043 21.8 5.6 39 74-112 89-127 (159)
141 1ofh_A ATP-dependent HSL prote 27.6 77 0.0026 24.7 4.6 52 50-101 233-301 (310)
142 2mys_B Myosin; muscle protein, 27.5 1.3E+02 0.0046 20.8 5.6 37 75-111 100-136 (166)
143 3i5g_B Myosin regulatory light 27.1 1.7E+02 0.0059 20.9 6.3 54 47-112 5-58 (153)
144 2kn2_A Calmodulin; S MAPK phos 27.1 1.1E+02 0.0036 19.4 4.6 21 81-101 20-40 (92)
145 1bh9_A TAFII18; histone fold, 26.9 1.2E+02 0.004 18.8 5.0 39 38-77 6-44 (45)
146 3d8b_A Fidgetin-like protein 1 26.7 1.3E+02 0.0045 24.9 6.2 62 39-100 257-335 (357)
147 1s6j_A CDPK, calcium-dependent 26.6 76 0.0026 19.8 3.8 38 77-114 30-67 (87)
148 3lf9_A 4E10_D0_1IS1A_001_C (T1 26.6 1.4E+02 0.0049 22.5 5.7 65 50-114 31-105 (121)
149 3sg6_A Gcamp2, myosin light ch 26.4 2.2E+02 0.0075 25.3 7.9 42 74-115 389-430 (450)
150 1jr3_D DNA polymerase III, del 26.2 61 0.0021 26.4 3.9 65 32-96 141-206 (343)
151 2kfn_A Klenow fragment of DNA 26.1 1.4E+02 0.0049 27.1 6.7 48 30-80 205-252 (605)
152 2e8o_A SAM domain and HD domai 25.9 31 0.0011 24.4 1.8 17 87-103 30-46 (103)
153 3ezq_B Protein FADD; apoptosis 25.7 81 0.0028 23.3 4.2 37 78-115 56-92 (122)
154 3eie_A Vacuolar protein sortin 25.6 93 0.0032 25.2 4.9 17 85-101 284-300 (322)
155 1iy2_A ATP-dependent metallopr 25.5 50 0.0017 26.1 3.2 58 38-96 215-277 (278)
156 2ovk_B RLC, myosin regulatory 25.3 1.2E+02 0.0042 20.7 4.9 35 79-113 25-59 (153)
157 1uhk_A Aequorin 2, aequorin; E 25.2 1.3E+02 0.0044 21.3 5.1 29 74-102 113-141 (191)
158 3f9v_A Minichromosome maintena 24.9 33 0.0011 31.3 2.2 48 51-98 521-586 (595)
159 3f8t_A Predicted ATPase involv 24.8 2.4E+02 0.0081 26.0 7.9 24 74-97 458-481 (506)
160 1j7q_A CAVP, calcium vector pr 24.6 86 0.003 19.6 3.7 25 78-102 22-46 (86)
161 2chq_A Replication factor C sm 24.4 76 0.0026 24.7 4.0 64 33-98 161-225 (319)
162 1y1x_A Leishmania major homolo 24.1 2.1E+02 0.0071 20.7 9.5 29 74-102 97-125 (191)
163 1qv0_A Obelin, OBL; photoprote 23.9 1.1E+02 0.0039 21.7 4.7 29 74-102 117-145 (195)
164 4a4j_A Pacszia, cation-transpo 23.5 40 0.0014 20.3 1.8 18 85-102 48-65 (69)
165 2pmy_A RAS and EF-hand domain- 23.1 1.1E+02 0.0036 19.8 4.0 27 76-102 33-59 (91)
166 2ns0_A Hypothetical protein; r 23.1 1.4E+02 0.0047 21.2 4.7 34 81-114 19-52 (85)
167 1exr_A Calmodulin; high resolu 23.1 1.2E+02 0.004 20.8 4.4 15 83-97 59-73 (148)
168 3dtp_E RLC, myosin regulatory 22.9 2.2E+02 0.0077 20.7 6.3 27 75-102 131-157 (196)
169 2kp7_A Crossover junction endo 22.6 1.7E+02 0.006 20.2 5.2 54 66-119 17-85 (87)
170 2opo_A Polcalcin CHE A 3; calc 22.2 1.2E+02 0.0041 18.9 4.0 23 78-100 19-41 (86)
171 1ng6_A Hypothetical protein YQ 21.9 2.5E+02 0.0087 21.0 6.4 27 85-116 43-69 (148)
172 3pxg_A Negative regulator of g 21.8 1.8E+02 0.0063 25.2 6.3 55 34-100 56-116 (468)
173 3nzz_A Cell invasion protein S 21.7 43 0.0015 29.1 2.2 67 29-98 39-105 (308)
174 1mu5_A Type II DNA topoisomera 21.4 45 0.0016 29.8 2.4 35 43-77 428-462 (471)
175 1whz_A Hypothetical protein; a 21.4 45 0.0015 21.7 1.8 17 86-102 4-20 (70)
176 2mys_B Myosin; muscle protein, 21.3 1.7E+02 0.0059 20.2 5.1 20 82-101 37-56 (166)
177 1wdc_B Scallop myosin; calcium 21.0 1.4E+02 0.0048 20.4 4.6 37 75-111 92-128 (156)
178 2pvb_A Protein (parvalbumin); 21.0 1.8E+02 0.0061 18.8 5.7 80 33-114 6-88 (108)
179 3k21_A PFCDPK3, calcium-depend 20.8 1.1E+02 0.0037 22.5 4.1 28 75-102 57-84 (191)
180 2aao_A CDPK, calcium-dependent 20.6 2.1E+02 0.0073 19.6 5.7 23 80-102 37-59 (166)
181 1v85_A Similar to ring finger 20.6 41 0.0014 23.2 1.5 23 86-108 19-43 (91)
182 3omb_A Extracellular solute-bi 20.4 1.2E+02 0.004 26.2 4.8 70 45-116 461-534 (535)
183 2qac_A Myosin A tail domain in 20.3 1.9E+02 0.0065 19.5 5.1 31 81-111 25-56 (146)
184 3iwl_A Copper transport protei 20.3 51 0.0018 20.2 1.9 17 86-102 45-61 (68)
No 1
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.97 E-value=1e-31 Score=219.51 Aligned_cols=98 Identities=34% Similarity=0.634 Sum_probs=92.0
Q ss_pred CCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCCcch
Q 030547 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYI 105 (175)
Q Consensus 26 ~~~~d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv 105 (175)
..++|+.||+|+|.||||++|| +++||+||+++|++||++||+|||++|+++|.+++||||+++||++||++|||++|+
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv 87 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYI 87 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGH
T ss_pred CchhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHH
Confidence 6789999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccC
Q 030547 106 DPLKAYLMRYREMEGDTKG 124 (175)
Q Consensus 106 ~~Lk~~L~~yre~~~~kk~ 124 (175)
++|+.+|++||++...|+.
T Consensus 88 ~~lk~~L~~yre~~~~kkr 106 (179)
T 1jfi_B 88 SEVKEVLQECKTVALKRRK 106 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcc
Confidence 9999999999998776643
No 2
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.97 E-value=1.9e-31 Score=207.19 Aligned_cols=104 Identities=32% Similarity=0.512 Sum_probs=88.0
Q ss_pred CCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCCcch
Q 030547 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYI 105 (175)
Q Consensus 26 ~~~~d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv 105 (175)
-+++|+.||+|+|.||||+++|++.+||+||+.+|++||++||+|||++|+++|.+++||||+++||++||+.+||.+|+
T Consensus 3 e~~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl 82 (128)
T 2byk_B 3 ERIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFV 82 (128)
T ss_dssp --------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTH
T ss_pred CccccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCC
Q 030547 106 DPLKAYLMRYREMEGDTKGSARGG 129 (175)
Q Consensus 106 ~~Lk~~L~~yre~~~~kk~~~k~~ 129 (175)
++|+.+|+.||++...|+..++.+
T Consensus 83 ~~lk~~l~~yr~~~~~kk~~~~~~ 106 (128)
T 2byk_B 83 PSLTQDLEVYRKVVKEKKESKASK 106 (128)
T ss_dssp HHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcc
Confidence 999999999999998888764433
No 3
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.97 E-value=2.3e-30 Score=189.88 Aligned_cols=92 Identities=72% Similarity=1.197 Sum_probs=86.0
Q ss_pred CCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCCcch
Q 030547 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYI 105 (175)
Q Consensus 26 ~~~~d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv 105 (175)
++++|+.||+|+|.||||+.+|++.+||+||+++|++||++||.||+++|++.|.+++||||+++||++|+++|||.+|+
T Consensus 2 ~~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~i 81 (93)
T 1n1j_A 2 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYV 81 (93)
T ss_dssp -----CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGGH
T ss_pred CCcccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhhH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 030547 106 DPLKAYLMRYRE 117 (175)
Q Consensus 106 ~~Lk~~L~~yre 117 (175)
++++.+|++||+
T Consensus 82 ~~~~~~l~~~r~ 93 (93)
T 1n1j_A 82 EPLKLYLQKFRE 93 (93)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999984
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.88 E-value=7.7e-23 Score=145.32 Aligned_cols=69 Identities=22% Similarity=0.307 Sum_probs=64.7
Q ss_pred cccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHc
Q 030547 30 DRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (175)
Q Consensus 30 d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (175)
...||+|+|.||||+++| +++||+||+++|++|+++||+||+++|++.|.+++||||+++||++|++.+
T Consensus 2 ~~~LP~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 2 RRTVPRGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp --CCCHHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 358999999999999999 789999999999999999999999999999999999999999999998754
No 5
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.84 E-value=2.2e-21 Score=155.08 Aligned_cols=75 Identities=25% Similarity=0.364 Sum_probs=72.0
Q ss_pred ccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCCcchH
Q 030547 31 RYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYID 106 (175)
Q Consensus 31 ~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~ 106 (175)
..||+++|.||||++||. .+||+||+++|++|+++|+.||+++|++.|.++|||||+++||+|||..|||++|++
T Consensus 3 ~~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d 77 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVED 77 (154)
T ss_dssp -CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTT
T ss_pred ccCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCc
Confidence 379999999999999986 899999999999999999999999999999999999999999999999999999865
No 6
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.79 E-value=1.7e-19 Score=124.68 Aligned_cols=66 Identities=33% Similarity=0.443 Sum_probs=63.7
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHc
Q 030547 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (175)
Q Consensus 32 ~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (175)
.||+++|.||||+. ++.+||+||+++|++|+++||.+|+.+|++.|.+++||||+++||.+|++.|
T Consensus 2 ~lP~a~v~Ri~k~~--~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHhcC--CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 59999999999999 5789999999999999999999999999999999999999999999999876
No 7
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.79 E-value=2.2e-19 Score=136.28 Aligned_cols=91 Identities=21% Similarity=0.296 Sum_probs=80.3
Q ss_pred cccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCCcchHH
Q 030547 28 EQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDP 107 (175)
Q Consensus 28 ~~d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~ 107 (175)
-+|+.||+++|.||+|... ..+||+|+.++|.+|+.+|+.+|+.+|...|++.|||||+++||++||++.||..|..+
T Consensus 3 ~~d~~lP~a~I~Ri~r~~g--~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~ 80 (111)
T 3b0c_T 3 TREPEIASSLIKQIFSHYV--KTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMP 80 (111)
T ss_dssp -------CHHHHHHHHHHH--CSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBC
T ss_pred CCCCCCCHHHHHHHHHHCC--CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcccccc
Confidence 3688999999999999993 68999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH--HHHhh
Q 030547 108 LKAYLMRY--REMEG 120 (175)
Q Consensus 108 Lk~~L~~y--re~~~ 120 (175)
++.++++| +|+..
T Consensus 81 l~~l~~~~lp~E~~~ 95 (111)
T 3b0c_T 81 LHVLVERHLPLEYRK 95 (111)
T ss_dssp HHHHHHHHSCHHHHH
T ss_pred HHHHHHHhCcHHHHH
Confidence 99999999 66544
No 8
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.73 E-value=1.1e-18 Score=137.51 Aligned_cols=97 Identities=18% Similarity=0.295 Sum_probs=62.2
Q ss_pred cccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCccChhhHHHHHHHc---CCCc
Q 030547 28 EQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKC-QKEKRKTINGDDLLWAMATL---GFED 103 (175)
Q Consensus 28 ~~d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~-~~~kRKTI~~eDVl~AL~~L---gF~~ 103 (175)
..++.||++.|.||||.. |+..+|++||..+|++|++.||.||+..|+..| ...+||||+++||.+|+... +|..
T Consensus 15 ~~~~~LPlaRIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 15 TAETFLPLSRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp --------------CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred ccCCCCCHHHHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 467899999999999998 888899999999999999999999999999999 99999999999999999854 5555
Q ss_pred chHHHHHHHHHHHHHhhcccCC
Q 030547 104 YIDPLKAYLMRYREMEGDTKGS 125 (175)
Q Consensus 104 yv~~Lk~~L~~yre~~~~kk~~ 125 (175)
++-+.+.+|..|+++.+.++.+
T Consensus 94 divP~ki~l~~~~~~~~~~~~~ 115 (140)
T 2byk_A 94 QIVPQKIRVHQFQEMLRLNRSA 115 (140)
T ss_dssp TTSCSCC---------------
T ss_pred ccccchhhHHHHHHHHHhcccc
Confidence 5558999999999887655443
No 9
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.71 E-value=3.2e-17 Score=131.02 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=69.1
Q ss_pred CCCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHc
Q 030547 25 GVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (175)
Q Consensus 25 ~~~~~d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (175)
.++.+|++||+++|.||||+. ...|||+||+++|++|+++|+.+|+++|++.|++++||||+++||++||+..
T Consensus 75 v~d~~~l~lP~a~V~Ri~k~~--g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 75 VEDYDGELFGRATVRRILKRA--GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp STTCCSCCCCHHHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCccccccCCccHHHHHHHHc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 577899999999999999999 4679999999999999999999999999999999999999999999999853
No 10
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.66 E-value=1.7e-16 Score=121.51 Aligned_cols=78 Identities=24% Similarity=0.335 Sum_probs=70.5
Q ss_pred CcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCCcch
Q 030547 27 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYI 105 (175)
Q Consensus 27 ~~~d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv 105 (175)
......||++.|.||||.. |+..+||+||..+|++|+++||.+|+.+|+..|..++||||+++||..|++..+.-+|.
T Consensus 36 d~k~~~lPvaRIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL 113 (119)
T 4g92_C 36 DYKIHQLPLARIKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFL 113 (119)
T ss_dssp CSSCCSSCHHHHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred ccccCCCCHHHHHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHH
Confidence 4456679999999999976 88889999999999999999999999999999999999999999999999876655554
No 11
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.65 E-value=3.8e-16 Score=116.89 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=71.6
Q ss_pred CCCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCCcc
Q 030547 25 GVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDY 104 (175)
Q Consensus 25 ~~~~~d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~y 104 (175)
.+++....||+++|.||++.... .+||+|+.++|++|+++|+..|+.+|...|++++||||+++||.+||+.++|.-|
T Consensus 21 ~~r~~i~~ip~~~I~Rlar~~Gv--~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~lY 98 (102)
T 1id3_B 21 ILRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 98 (102)
T ss_dssp ---CCGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCEE
T ss_pred HHHhccCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 46888889999999999999864 6899999999999999999999999999999999999999999999999999766
No 12
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.64 E-value=3e-16 Score=115.94 Aligned_cols=80 Identities=24% Similarity=0.281 Sum_probs=69.6
Q ss_pred CCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCCcch
Q 030547 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYI 105 (175)
Q Consensus 26 ~~~~d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv 105 (175)
....+..||.+.|.||||.. |+..+||+||..+|.+|++.||.+|+.+|++.|++++||||+++||..|++..++.+|.
T Consensus 13 ~~~~~~~lP~arIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL 91 (97)
T 1n1j_B 13 KDFRVQELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFL 91 (97)
T ss_dssp -------CCHHHHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred CCcCCCcCCHHHHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHH
Confidence 34456789999999999998 66779999999999999999999999999999999999999999999999998888886
Q ss_pred H
Q 030547 106 D 106 (175)
Q Consensus 106 ~ 106 (175)
.
T Consensus 92 ~ 92 (97)
T 1n1j_B 92 I 92 (97)
T ss_dssp T
T ss_pred H
Confidence 4
No 13
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.63 E-value=3.7e-16 Score=112.86 Aligned_cols=77 Identities=18% Similarity=0.291 Sum_probs=72.2
Q ss_pred CCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCCcc
Q 030547 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDY 104 (175)
Q Consensus 26 ~~~~d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~y 104 (175)
+++....||+++|.||++.... .+||+|+.++|.+|+++|+..|+.+|...|++.+||||+++||.+||+.+||.-|
T Consensus 4 ~r~~~~~ip~~~I~Riar~~Gv--~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 4 LRDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp GGGGCCSSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred ccccCCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 5677788999999999999864 6899999999999999999999999999999999999999999999999998765
No 14
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.59 E-value=3.6e-15 Score=103.83 Aligned_cols=64 Identities=27% Similarity=0.455 Sum_probs=61.2
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHH
Q 030547 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (175)
Q Consensus 32 ~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (175)
.||+++|.||+|+. ...+||+++.++|++|+.+|+..|+.+|+..|.+.|||||+++||..|++
T Consensus 6 ~lp~a~v~Rl~r~~--g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc--CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 69999999999997 36799999999999999999999999999999999999999999999985
No 15
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.58 E-value=5.1e-15 Score=110.48 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=73.2
Q ss_pred CCCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCCcc
Q 030547 25 GVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDY 104 (175)
Q Consensus 25 ~~~~~d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~y 104 (175)
..++.+..||+++|.||++.... .+||.|+.+.|.+|+++|+..|+.+|...|++++||||+++||.+||+.++|+-|
T Consensus 22 ~~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lY 99 (103)
T 1tzy_D 22 VLRDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99 (103)
T ss_dssp CCCCGGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEE
T ss_pred chhhhcccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCc
Confidence 36788888999999999999975 5899999999999999999999999999999999999999999999999998755
No 16
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.56 E-value=7.2e-15 Score=109.79 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=64.3
Q ss_pred CCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCCcc
Q 030547 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDY 104 (175)
Q Consensus 26 ~~~~d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~y 104 (175)
+++....||+++|.||++.... .+||.|+.+.|.+|+++|+..|+.+|...|++++||||+++||.+||+.++|.-|
T Consensus 23 ~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lY 99 (103)
T 2yfw_B 23 LRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99 (103)
T ss_dssp -------CCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC----
T ss_pred hhhhhccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCc
Confidence 4777888999999999999875 5899999999999999999999999999999999999999999999999998755
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.33 E-value=1.3e-12 Score=96.81 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=59.8
Q ss_pred cccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCCcchHHH
Q 030547 30 DRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPL 108 (175)
Q Consensus 30 d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~L 108 (175)
...||.+.|.||||.. ++..+||.||..++.++++.|+.+|+..|...|+..+||||+++||..|++.-+..+|...+
T Consensus 9 ~~~fPvaRIkrimK~~-~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~di 86 (98)
T 1jfi_A 9 NARFPPARIKKIMQTD-EEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANKAR 86 (98)
T ss_dssp -CCCCHHHHHHHHTTS-TTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-----------
T ss_pred CCCCChHHHHHHHHcC-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHHhc
Confidence 4689999999999975 55679999999999999999999999999999999999999999999999876666665543
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.13 E-value=1.4e-10 Score=83.11 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=64.9
Q ss_pred cccCchhHHHHHHHhhCC---CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcC
Q 030547 30 DRYLPIANISRIMKKALP---ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (175)
Q Consensus 30 d~~LP~A~V~RImK~~LP---~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (175)
++.||++.+.||+|+... .+.+++.+|..+||++++.|+.-|...|+..|.+.||+||.++||.-|.+--|
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 578999999999999954 36899999999999999999999999999999999999999999999987654
No 19
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=99.01 E-value=6.4e-10 Score=83.19 Aligned_cols=72 Identities=18% Similarity=0.143 Sum_probs=60.6
Q ss_pred CCcccccCchhHHHHHHHhhCCC------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHH
Q 030547 26 VREQDRYLPIANISRIMKKALPA------NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (175)
Q Consensus 26 ~~~~d~~LP~A~V~RImK~~LP~------~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (175)
.+..++.||++.+.||+++...+ +.+++.+|..+||++++.|+.-|...||..|.+.||+||.++||.-|..
T Consensus 21 Qkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 21 QRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp -------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 45788999999999999999843 6799999999999999999999999999999999999999999998863
No 20
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.00 E-value=8.7e-10 Score=79.88 Aligned_cols=70 Identities=17% Similarity=0.115 Sum_probs=64.0
Q ss_pred ccCchhHHHHHHHhhCC-----CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcC
Q 030547 31 RYLPIANISRIMKKALP-----ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (175)
Q Consensus 31 ~~LP~A~V~RImK~~LP-----~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (175)
+.||++.+.||+|+... .+.+++.+|..+||++++.|+.-|...||..|.+.||+||.++||.-|..--|
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg 76 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 76 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcc
Confidence 57899999999999983 26799999999999999999999999999999999999999999999876544
No 21
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.94 E-value=1.4e-09 Score=87.12 Aligned_cols=72 Identities=15% Similarity=0.105 Sum_probs=64.6
Q ss_pred CcccccCchhHHHHHHHhhCCC-----CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHH
Q 030547 27 REQDRYLPIANISRIMKKALPA-----NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (175)
Q Consensus 27 ~~~d~~LP~A~V~RImK~~LP~-----~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (175)
+..++.||++.+.|||+++..+ +.+|+.+|.++||++++.|+.-|...||..|.+.||+||.++||..|+.-
T Consensus 72 kSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 72 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp ---CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 5788999999999999999842 57999999999999999999999999999999999999999999998754
No 22
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.93 E-value=1.4e-09 Score=85.69 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=66.2
Q ss_pred CcccccCchhHHHHHHHhhCC-----CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCC
Q 030547 27 REQDRYLPIANISRIMKKALP-----ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGF 101 (175)
Q Consensus 27 ~~~d~~LP~A~V~RImK~~LP-----~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF 101 (175)
+..++.||++.+.|||+++.. .+.+|+.+|.++||++++.|+.-|...||..|.+.||+||.++||..|..--|.
T Consensus 56 kst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~ 135 (140)
T 3nqu_A 56 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 135 (140)
T ss_dssp ---CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred cccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhccc
Confidence 578899999999999999973 267999999999999999999999999999999999999999999999876554
No 23
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.92 E-value=2.2e-09 Score=84.24 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=67.9
Q ss_pred CcccccCchhHHHHHHHhhCC---CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcC
Q 030547 27 REQDRYLPIANISRIMKKALP---ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (175)
Q Consensus 27 ~~~d~~LP~A~V~RImK~~LP---~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (175)
+..++.||++.+.||+++... .+.+|+.+|..+||++++.|+.-|...||..|.+.+|+||.++||..|..--|
T Consensus 57 kst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg 133 (136)
T 1tzy_C 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
T ss_dssp HCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred cchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhC
Confidence 467899999999999999943 46899999999999999999999999999999999999999999999986544
No 24
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.79 E-value=1.4e-08 Score=77.43 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=67.9
Q ss_pred HHHHHHHhhCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCCcchHHHHHHHHHH
Q 030547 37 NISRIMKKALPA-NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (175)
Q Consensus 37 ~V~RImK~~LP~-~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (175)
+|.||+++...+ ++.||+++..+|.+.+..|+.-|+..+...|++.|||||+++||..++++. +.|..+|..|
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~------~~L~~~l~~~ 105 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS------NSLLKYITDK 105 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 589999999764 678999999999999999999999999999999999999999999999874 6677777777
Q ss_pred HHHh
Q 030547 116 REME 119 (175)
Q Consensus 116 re~~ 119 (175)
.+..
T Consensus 106 ~~el 109 (113)
T 4dra_A 106 SEEI 109 (113)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 25
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.78 E-value=1e-08 Score=80.77 Aligned_cols=75 Identities=12% Similarity=0.143 Sum_probs=64.7
Q ss_pred HHHHHHHhhCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCCcchHHHHHHHHHH
Q 030547 37 NISRIMKKALPA-NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (175)
Q Consensus 37 ~V~RImK~~LP~-~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (175)
+|.||+++...+ ++.||+++..+|.+.+..|+.-|+..+...|++.|||||+++||..++++. +.|..+|..|
T Consensus 24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn------~~L~~~L~~~ 97 (140)
T 3vh5_A 24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQK 97 (140)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 578999988654 688999999999999999999999999999999999999999999999874 4555555555
Q ss_pred HH
Q 030547 116 RE 117 (175)
Q Consensus 116 re 117 (175)
.+
T Consensus 98 ~~ 99 (140)
T 3vh5_A 98 SD 99 (140)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 26
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.74 E-value=4.5e-08 Score=68.90 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=61.1
Q ss_pred ccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHH
Q 030547 31 RYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (175)
Q Consensus 31 ~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (175)
-.||+++|.+|+++..- .+++.|+...|.+-++..+..|+.+|...+++.||||++.+||-.||+
T Consensus 5 s~lp~~~v~~iaes~Gi--~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIGV--GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTTC--CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 36999999999999963 389999999999999999999999999999999999999999999985
No 27
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.69 E-value=4.9e-08 Score=71.73 Aligned_cols=62 Identities=13% Similarity=0.160 Sum_probs=58.6
Q ss_pred HHHHHHHhhCCCC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHH
Q 030547 37 NISRIMKKALPAN-GKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (175)
Q Consensus 37 ~V~RImK~~LP~~-~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (175)
+|.||+.+.++.+ +.||+++..+|.+.+..|+.-|+..+...|++.|||||+++||.-++++
T Consensus 17 ~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 17 RVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 5889999998865 8999999999999999999999999999999999999999999999876
No 28
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.65 E-value=6.5e-08 Score=73.06 Aligned_cols=75 Identities=12% Similarity=0.134 Sum_probs=64.2
Q ss_pred HHHHHHHhhCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCCcchHHHHHHHHHH
Q 030547 37 NISRIMKKALPA-NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (175)
Q Consensus 37 ~V~RImK~~LP~-~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (175)
+|.||+++.... +.++|+++..+|.+.+..|+.-|+..|...|++.|||||+.+||..|+++. +.|...|..|
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn------~~l~~~l~~~ 97 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQK 97 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC------HHHHHHHHHH
Confidence 489999988642 569999999999999999999999999999999999999999999999874 4455555555
Q ss_pred HH
Q 030547 116 RE 117 (175)
Q Consensus 116 re 117 (175)
.+
T Consensus 98 ~~ 99 (107)
T 3b0b_B 98 SD 99 (107)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 29
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.42 E-value=8.1e-07 Score=68.75 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=64.2
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHH
Q 030547 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (175)
Q Consensus 29 ~d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (175)
-.+.||.+.|.|+||+......+|+.+|...|..+.+.|...|...|...|.+.+|++|+++||..|+..
T Consensus 24 agLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 24 AGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp HTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 4688999999999999864345999999999999999999999999999999999999999999999874
No 30
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.40 E-value=9.6e-07 Score=67.89 Aligned_cols=69 Identities=14% Similarity=0.215 Sum_probs=63.1
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHH
Q 030547 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (175)
Q Consensus 29 ~d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (175)
-.+.||.+.|.|+||+.-- ..+|+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|+..
T Consensus 20 agL~fPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 20 AGLQFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp HTCSSCHHHHHHHHHHTTS-CSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCeeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 4678999999999999833 24999999999999999999999999999999999999999999999873
No 31
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.38 E-value=1.7e-06 Score=60.49 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=56.4
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHH
Q 030547 36 ANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (175)
Q Consensus 36 A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (175)
..|.||+|+..- -+++.++...|.+++..++.-|..+|...|.+.|||||+.+||..|++.
T Consensus 5 ~~i~~iLk~~G~--~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKELNV--QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHTTC--CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHCCC--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 368999999863 3899999999999999999999999999999999999999999999874
No 32
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.37 E-value=1.2e-06 Score=67.89 Aligned_cols=69 Identities=14% Similarity=0.217 Sum_probs=63.2
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHH
Q 030547 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (175)
Q Consensus 29 ~d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (175)
-.+.||.+.|.|+||+.-- ..+|+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|+..
T Consensus 22 agLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 22 AGLQFPVGRVHRLLRKGNY-AERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp HTCSSCHHHHHHHHHHTTS-SSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CceeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 4688999999999999733 24999999999999999999999999999999999999999999999873
No 33
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.35 E-value=1.1e-06 Score=68.18 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=63.2
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHH
Q 030547 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (175)
Q Consensus 29 ~d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (175)
-.+.||.+.|.|+||+.-- ..+|+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|++.
T Consensus 22 agLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 22 AGLTFPVGRVHRLLRRGNY-AQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp GTCSSCHHHHHHHHHTTCS-CSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCeecCHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 4679999999999999743 24999999999999999999999999999999999999999999999873
No 34
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.35 E-value=1.5e-06 Score=66.59 Aligned_cols=69 Identities=19% Similarity=0.269 Sum_probs=63.4
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHH
Q 030547 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (175)
Q Consensus 29 ~d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (175)
-.+.||.+.|.|+||+.-- ..+|+.+|...|..+.+.|...|...|...|++.+|++|+++||..|++.
T Consensus 19 agLqfPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 19 AGVIFPVGRMLRYIKKGHP-KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HTCSSCHHHHHHHHHHHSS-SCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred cCccCChHHHHHHHHcCcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 3578999999999999853 35999999999999999999999999999999999999999999999873
No 35
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.34 E-value=9.1e-07 Score=68.14 Aligned_cols=53 Identities=19% Similarity=0.314 Sum_probs=37.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCCc
Q 030547 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFED 103 (175)
Q Consensus 51 kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~ 103 (175)
|||.|+.+.+.++..+|+.-|...|...|++.+||||+++||.-||+..|-.-
T Consensus 64 RIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~l 116 (121)
T 2ly8_A 64 RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTL 116 (121)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGG
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcC
Confidence 34444444444444444455555888899999999999999999999988643
No 36
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.30 E-value=1.9e-06 Score=68.36 Aligned_cols=69 Identities=14% Similarity=0.223 Sum_probs=63.1
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHH
Q 030547 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (175)
Q Consensus 29 ~d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (175)
-.+.||.+.|.|+||+.-- ..||+.+|...|..+.+.|+..|...|...|...+|++|+++||..|++.
T Consensus 41 agLqFPVgrI~R~LK~~~~-a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 41 AGLQFPVGRVHRLLRKGNY-SERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HTCSSCHHHHHHHHHHTTS-CSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCeeccHHHHHHHHHcccc-ccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 3578999999999999843 24999999999999999999999999999999999999999999999873
No 37
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.26 E-value=2.6e-06 Score=65.83 Aligned_cols=63 Identities=25% Similarity=0.340 Sum_probs=58.8
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHc
Q 030547 36 ANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (175)
Q Consensus 36 A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (175)
..|+|++|++-| +..||.+|...|+..+..+..-|+.+|...|..++|+||+.+||..|.+-|
T Consensus 37 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 37 IYIYTVLKQVHP-DTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 458999999988 578999999999999999999999999999999999999999999998654
No 38
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.23 E-value=3.2e-06 Score=65.52 Aligned_cols=62 Identities=24% Similarity=0.355 Sum_probs=58.4
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHc
Q 030547 37 NISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (175)
Q Consensus 37 ~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (175)
.|+|++|++-| +..||.+|...|+..+..+..-|+.+|...+..++|+||+.+||..|.+-|
T Consensus 41 YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 41 YVYKVLKQVHP-DTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp HHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 69999999988 478999999999999999999999999999999999999999999998654
No 39
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.16 E-value=5.8e-06 Score=67.39 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=63.4
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHH
Q 030547 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (175)
Q Consensus 29 ~d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (175)
..+.||.+.|.|+||+.-....+|+.+|...|..+.+.|+..|...|...|++.+|++|+++||..|+..
T Consensus 102 agl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 102 AGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp SSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 3578999999999999843235999999999999999999999999999999999999999999999873
No 40
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.11 E-value=4.9e-06 Score=70.34 Aligned_cols=72 Identities=17% Similarity=0.148 Sum_probs=64.0
Q ss_pred ccccCchhHHHHHHHhhCCC------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcC
Q 030547 29 QDRYLPIANISRIMKKALPA------NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (175)
Q Consensus 29 ~d~~LP~A~V~RImK~~LP~------~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (175)
..+.+|+....|++++...+ +.+++.+|..|||++++.|+.-|...+|-.|.+.||.||.+.|+..|..--|
T Consensus 8 ~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 8 KKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp ---CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred ccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 45789999999999998764 5799999999999999999999999999999999999999999999987554
No 41
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.03 E-value=3.5e-06 Score=71.21 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=52.8
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcC
Q 030547 40 RIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (175)
Q Consensus 40 RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (175)
||++... ..+||.++.+.+.+...+|+.-|...|...|++.+||||+++||..||+.+|
T Consensus 169 RlaRrgG--VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 169 EDGDKGG--VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp TTSCCTT--CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred HHhhcCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 5555543 2489999999999999999999999999999999999999999999999764
No 42
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=98.02 E-value=3.2e-05 Score=56.09 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=62.6
Q ss_pred cccCchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHc
Q 030547 30 DRYLPIANISRIMKKALP-ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (175)
Q Consensus 30 d~~LP~A~V~RImK~~LP-~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (175)
+..+|..+|.||++...- ++.||++||..++.+....||.--...|.+.++.++..+|..+|+-+.+-.|
T Consensus 10 ~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQL 80 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQL 80 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 446899999999998886 5789999999999999999999999999999998898899999998877544
No 43
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.95 E-value=2.7e-05 Score=63.40 Aligned_cols=63 Identities=21% Similarity=0.354 Sum_probs=58.7
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHc
Q 030547 36 ANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (175)
Q Consensus 36 A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (175)
.-|+|++|++-| +..||+||...|...+..+..-|+.+|...+...+|+||+.+||..|++-+
T Consensus 7 ~yi~kvLkqv~p-~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 7 SYIYKVLKQTHP-DTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp HHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHcccCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 459999999998 578999999999999999999999999999999999999999999998643
No 44
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.92 E-value=5.4e-05 Score=54.44 Aligned_cols=73 Identities=14% Similarity=0.226 Sum_probs=62.9
Q ss_pred CcccccCchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHc
Q 030547 27 REQDRYLPIANISRIMKKALP-ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (175)
Q Consensus 27 ~~~d~~LP~A~V~RImK~~LP-~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (175)
.+.+..+|...|.||++.... +..||++||..++.+....||.-....|...++.++-..|..+|+-+.+-.|
T Consensus 3 ~~~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pqL 76 (81)
T 3b0b_C 3 EEREGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQL 76 (81)
T ss_dssp ----CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CccCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHHH
Confidence 455778999999999999987 4789999999999999999999999999999988999999999998877544
No 45
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.75 E-value=0.00018 Score=51.24 Aligned_cols=66 Identities=15% Similarity=0.336 Sum_probs=61.9
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHH
Q 030547 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (175)
Q Consensus 32 ~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (175)
-|++..+..++++.=| +..+..|+.++|.+.|.+||.-+++.|-..|++.+-.||...||...|++
T Consensus 5 vl~k~~L~~Lv~~idp-~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDP-NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 4789999999999966 78999999999999999999999999999999999999999999998874
No 46
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.46 E-value=0.00063 Score=49.53 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=60.9
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccChhhHHHHHHHcC
Q 030547 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEK-RKTINGDDLLWAMATLG 100 (175)
Q Consensus 32 ~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~k-RKTI~~eDVl~AL~~Lg 100 (175)
.||++.|.|||...+ +..++.+...+|.-.+.+||--|..+|.+++.+.+ +.-|.+.||-.|.+.|.
T Consensus 16 ~f~k~~vKrl~~~~~--~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 16 AFPKAAIKRLIQSIT--GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCCHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 599999999999998 46899999999999999999999999999998876 44899999999988764
No 47
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0038 Score=47.89 Aligned_cols=84 Identities=12% Similarity=0.172 Sum_probs=58.2
Q ss_pred cCchhHHHHHHHhhCC---C---CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCccChhhHHHHHHHcCCC
Q 030547 32 YLPIANISRIMKKALP---A---NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEK---RKTINGDDLLWAMATLGFE 102 (175)
Q Consensus 32 ~LP~A~V~RImK~~LP---~---~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~k---RKTI~~eDVl~AL~~LgF~ 102 (175)
.+|+....|++++... . +.+++.+|..+||++++.|+.-|...+|-.|.+.. =|-|+.+ +...+... +.
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~-iy~e~r~v-l~ 78 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGL-IYEEVRAV-LK 78 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSC-HHHHHHHH-HH
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHH-HHHHHHHH-HH
Confidence 3788889999887642 2 67999999999999999999999999998777663 3456653 54444321 23
Q ss_pred cchHHHHHHHHHHHH
Q 030547 103 DYIDPLKAYLMRYRE 117 (175)
Q Consensus 103 ~yv~~Lk~~L~~yre 117 (175)
+|.+.+-...-.|-+
T Consensus 79 ~~l~~i~rdav~yae 93 (121)
T 2ly8_A 79 SFLESVIRDSVTYTE 93 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 48
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.005 Score=44.95 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=39.8
Q ss_pred cCchhHHHHHHHhhCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030547 32 YLPIANISRIMKKALPA-NGKIAKDAKDTVQECVSEFISFITSEASDKC 79 (175)
Q Consensus 32 ~LP~A~V~RImK~~LP~-~~kISkDA~~al~~~aseFI~~LtseA~~~~ 79 (175)
.||+.+|.||++..... +.||++||..++++...+||.--...|.+..
T Consensus 1 ~ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~k 49 (88)
T 3v9r_B 1 MLSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSH 49 (88)
T ss_dssp CCCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999987764 7899999999999999999976665555433
No 49
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.94 E-value=0.33 Score=40.15 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=49.8
Q ss_pred CchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccChhhHHHHHHH
Q 030547 33 LPIANISRIMKKALP-ANGKIAKDAKDTVQECVS----EFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (175)
Q Consensus 33 LP~A~V~RImK~~LP-~~~kISkDA~~al~~~as----eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (175)
++...+..|++..+. .+..++.++.+.|.+.+. -.+..+...|...|..+++++|+.+||..|++.
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 455667777775554 246799999999988876 244445556777888889999999999999986
No 50
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=86.30 E-value=3.3 Score=33.84 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=54.2
Q ss_pred CchhHHHHHHHhhCCC---CCcccHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhcCCCccChhhHHHHHH
Q 030547 33 LPIANISRIMKKALPA---NGKIAKDAKDTVQECV------------SEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (175)
Q Consensus 33 LP~A~V~RImK~~LP~---~~kISkDA~~al~~~a------------seFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (175)
|....+..+++..+.. ...++.++...+.+.+ --++..+...|...|..+++.+|+.+||..|++
T Consensus 193 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp CBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 3445666666665432 2479999999888887 233455556677788888899999999999999
Q ss_pred HcCCCcchHHH
Q 030547 98 TLGFEDYIDPL 108 (175)
Q Consensus 98 ~LgF~~yv~~L 108 (175)
.+....+...+
T Consensus 273 ~~~~~~~~~~l 283 (389)
T 1fnn_A 273 EVLFGISEEVL 283 (389)
T ss_dssp HHSCCCCHHHH
T ss_pred HHhhhhHHHHH
Confidence 88766554444
No 51
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=86.07 E-value=1.3 Score=38.72 Aligned_cols=66 Identities=11% Similarity=0.094 Sum_probs=49.0
Q ss_pred CchhHHHHHHHhhCC-CCCcccHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCccChhhHHHHHHH
Q 030547 33 LPIANISRIMKKALP-ANGKIAKDAKDTVQECV-S---EFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (175)
Q Consensus 33 LP~A~V~RImK~~LP-~~~kISkDA~~al~~~a-s---eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (175)
+....+..+++..+. .+..++.++...|.+.+ . -....|...|...|..+++.+|+.+||..|+.-
T Consensus 366 ~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 366 YTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 455666677765543 24579999998888876 1 244555567888999999999999999999865
No 52
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=84.57 E-value=3.2 Score=40.73 Aligned_cols=66 Identities=18% Similarity=0.195 Sum_probs=50.2
Q ss_pred cccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHH
Q 030547 30 DRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (175)
Q Consensus 30 d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (175)
.+.+|...|.|++|.... -||+..|..-+....+-...-|.-.|...|+..+++.|++.||..|+.
T Consensus 102 ~l~~pv~~~~~~l~~~~~--~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~ 167 (1049)
T 3ksy_A 102 PLSLPVEKIHPLLKEVLG--YKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMC 167 (1049)
T ss_dssp SCSSCHHHHHHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred CccccHHHHHHHhhcccc--cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCcccccccc
Confidence 478999999999977764 499988877776544433334444466677888899999999999986
No 53
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=84.15 E-value=2.7 Score=34.17 Aligned_cols=67 Identities=9% Similarity=0.113 Sum_probs=50.3
Q ss_pred hhHHHHHHHhhCC---CCCcccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCC
Q 030547 35 IANISRIMKKALP---ANGKIAKDAKDTVQECVS------EFISFITSEASDKCQKEKRKTINGDDLLWAMATLGF 101 (175)
Q Consensus 35 ~A~V~RImK~~LP---~~~kISkDA~~al~~~as------eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF 101 (175)
...+..|++..+. .+..++.++.+.+.+.+. -.+..+...|...|..+++.+|+.+||..|++.+..
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIER 278 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence 5666667665543 145799999998888876 345555666778888888999999999999987743
No 54
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=83.55 E-value=2.9 Score=30.33 Aligned_cols=33 Identities=12% Similarity=0.283 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHH
Q 030547 52 IAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAM 96 (175)
Q Consensus 52 ISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL 96 (175)
++++++.+|+. |.+.|.+.+...|.++|++.||
T Consensus 2 ~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaL 34 (143)
T 1k6k_A 2 LNQELELSLNM------------AFARAREHRHEFMTVEHLLLAL 34 (143)
T ss_dssp BCHHHHHHHHH------------HHHHHHHHTBSEECHHHHHHHH
T ss_pred CCHHHHHHHHH------------HHHHHHHcCCCCcCHHHHHHHH
Confidence 56667777764 7889999999999999999998
No 55
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=81.30 E-value=1.6 Score=29.19 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=33.0
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCccChhhHHHHHHHc
Q 030547 57 KDTVQECVSEF----ISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (175)
Q Consensus 57 ~~al~~~aseF----I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (175)
...|.+.+.-| |..|..+|...|.++++..|+.+|+..||+++
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 34444444434 67778888889999999999999999999864
No 56
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=80.67 E-value=5.2 Score=32.33 Aligned_cols=75 Identities=8% Similarity=0.082 Sum_probs=52.4
Q ss_pred CchhHHHHHHHhhCC---CCCcccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCCc
Q 030547 33 LPIANISRIMKKALP---ANGKIAKDAKDTVQECVS------EFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFED 103 (175)
Q Consensus 33 LP~A~V~RImK~~LP---~~~kISkDA~~al~~~as------eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~ 103 (175)
|....+..|++..+. ....++.++...+.+.+. ..+.-+...|...+..+++.+|+.+||..|++++....
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~ 276 (386)
T 2qby_A 197 YNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERDR 276 (386)
T ss_dssp CCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhch
Confidence 445566777765432 134789999888888775 23444566777888888899999999999998876444
Q ss_pred chHH
Q 030547 104 YIDP 107 (175)
Q Consensus 104 yv~~ 107 (175)
+...
T Consensus 277 ~~~~ 280 (386)
T 2qby_A 277 VRDI 280 (386)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 57
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=80.63 E-value=4.3 Score=29.44 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=32.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcC
Q 030547 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (175)
Q Consensus 51 kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (175)
+++..++.+|.. |...|.+.+...|.++|++.||=+-+
T Consensus 5 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 5 RLTNKFQLALAD------------AQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred hhhHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 688888888875 78899999999999999999985443
No 58
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=78.23 E-value=3.4 Score=30.20 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=32.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcC
Q 030547 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (175)
Q Consensus 51 kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (175)
+++..++.+|.. |.+.|.+.+...|.++|++.||=+-+
T Consensus 5 ~~t~~~~~al~~------------A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (150)
T 2y1q_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (150)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 688888888875 78899999999999999999985443
No 59
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=77.41 E-value=3.1 Score=30.69 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=32.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHc
Q 030547 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (175)
Q Consensus 51 kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (175)
+++..++.+|.. |.+.|.+.+...|.++|++.||=+-
T Consensus 6 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~ 42 (146)
T 3fh2_A 6 RFTDRARRVIVL------------AQEEARMLNHNYIGTEHILLGLIHE 42 (146)
T ss_dssp GBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHH------------HHHHHHHcCCCCchHHHHHHHHHhC
Confidence 688888888875 7889999999999999999998653
No 60
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=75.69 E-value=15 Score=33.27 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=39.2
Q ss_pred CcccHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhcCCCccChhhHHHHHHH
Q 030547 50 GKIAKDAKDTVQECVS-------------EFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (175)
Q Consensus 50 ~kISkDA~~al~~~as-------------eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (175)
..++.||...|.+.+. --+.-|...|...|..+++.+|+.+||.+|++.
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 3799999999988653 234445557888999999999999999999964
No 61
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=73.86 E-value=3.5 Score=27.83 Aligned_cols=30 Identities=33% Similarity=0.216 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCCccChhhHHHHHHHcC
Q 030547 71 ITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (175)
Q Consensus 71 LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (175)
|..+|...|.++++..|+.+|+..|+++.-
T Consensus 40 l~~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 40 IMQEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 344566677788889999999999998764
No 62
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=73.86 E-value=3.6 Score=28.38 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCC
Q 030547 68 ISFITSEASDKCQKEKRKTINGDDLLWAMATLGF 101 (175)
Q Consensus 68 I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF 101 (175)
|.-|..+|...|.++++..|+.+|+..|++.+-.
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVIS 73 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhc
Confidence 5666677888888889999999999999997654
No 63
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=73.35 E-value=6.6 Score=28.90 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=33.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcC
Q 030547 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (175)
Q Consensus 51 kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (175)
+++..++.+|.. |.+.|.+.+...|.++|++.||=+-+
T Consensus 7 ~~T~~a~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~~ 44 (145)
T 3fes_A 7 RFTQRAKKAIDL------------AFESAKSLGHNIVGSEHILLGLLREE 44 (145)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 688999988885 78889999999999999999986543
No 64
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=72.97 E-value=18 Score=29.29 Aligned_cols=51 Identities=12% Similarity=0.022 Sum_probs=36.1
Q ss_pred CCcccHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhcCCCccChhhHHHHHHHc
Q 030547 49 NGKIAKDAKDTVQECVSEF-----------------------ISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (175)
Q Consensus 49 ~~kISkDA~~al~~~aseF-----------------------I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (175)
++.|+.++.+.+.+.+... ...|...|...|.-++|..|+.+||..|+..+
T Consensus 224 ~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 224 KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 5668888888877655321 22334456667778899999999999998753
No 65
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=72.59 E-value=3.4 Score=27.75 Aligned_cols=33 Identities=24% Similarity=0.174 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhcCCCccChhhHHHHHHHcC
Q 030547 68 ISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (175)
Q Consensus 68 I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (175)
|..|..+|...|.++.+..|+.+|+..|++++-
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 445666788888889899999999999998764
No 66
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=71.61 E-value=4 Score=28.22 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhcCCCccChhhHHHHHHHc
Q 030547 68 ISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (175)
Q Consensus 68 I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (175)
|..|..+|...|.++.+..|+.+|+..|+++.
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34466678888888889999999999999764
No 67
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=68.66 E-value=14 Score=29.85 Aligned_cols=51 Identities=10% Similarity=-0.069 Sum_probs=39.5
Q ss_pred CCcccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCccChhhHHHHHHHc
Q 030547 49 NGKIAKDAKDTVQECVSE-------FISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (175)
Q Consensus 49 ~~kISkDA~~al~~~ase-------FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (175)
+..|+.++...|.+.+.- -+..+...|...|..++|.+|+.+||..|+..+
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 458999999999887643 344455567778888899999999999998754
No 68
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=65.42 E-value=11 Score=30.88 Aligned_cols=67 Identities=9% Similarity=0.018 Sum_probs=45.7
Q ss_pred CchhHHHHHHHhhCC---CCCcccHHHHHHHHHHHH---H---HHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCC
Q 030547 33 LPIANISRIMKKALP---ANGKIAKDAKDTVQECVS---E---FISFITSEASDKCQKEKRKTINGDDLLWAMATLGF 101 (175)
Q Consensus 33 LP~A~V~RImK~~LP---~~~kISkDA~~al~~~as---e---FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF 101 (175)
|....+..|++..+. ....++.++...+.+.+. = .+.-+...|...|. ++.+|+.+||..|++++..
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~~ 272 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYEQ 272 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHhc
Confidence 455667777776432 135799999888888776 1 23334445566665 6679999999999988743
No 69
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=61.73 E-value=13 Score=27.11 Aligned_cols=63 Identities=10% Similarity=0.093 Sum_probs=40.4
Q ss_pred CchhHHHHHHHhhCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHH
Q 030547 33 LPIANISRIMKKALPA-NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (175)
Q Consensus 33 LP~A~V~RImK~~LP~-~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (175)
++...+.++++..+.. +..++.++...|.+.+.--+..+-......+... ++|+.+||..++.
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 4556666666665432 4568898888887766544444444444444333 6999999999875
No 70
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=60.59 E-value=7.6 Score=30.13 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=31.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHc
Q 030547 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (175)
Q Consensus 51 kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (175)
+++..++.+|+. |.+.|.+.+...|.++|++.||=+-
T Consensus 24 kfT~~a~~aL~~------------A~~~A~~~~h~~I~~EHLLlaLL~~ 60 (171)
T 3zri_A 24 KLNAQSKLALEQ------------AASLCIERQHPEVTLEHYLDVLLDN 60 (171)
T ss_dssp HBCHHHHHHHHH------------HHHHHHHHTCSEECHHHHHHHHTTC
T ss_pred HcCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHHc
Confidence 578888888875 7888999999999999999998543
No 71
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=57.53 E-value=16 Score=26.82 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=32.0
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcC
Q 030547 50 GKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (175)
Q Consensus 50 ~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (175)
..+|.++..+|.+ |...|+..+...|+.+|++.||-+-+
T Consensus 80 ~~~s~~~~~vl~~------------A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 80 IVLSPRSKQILEL------------SGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp CEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 4578888777775 77888899999999999999996554
No 72
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=56.77 E-value=35 Score=28.15 Aligned_cols=68 Identities=22% Similarity=0.277 Sum_probs=45.3
Q ss_pred hHHHHHHHhhCC-CCCcccHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCCc
Q 030547 36 ANISRIMKKALP-ANGKIAKDAKDTVQECVS---EFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFED 103 (175)
Q Consensus 36 A~V~RImK~~LP-~~~kISkDA~~al~~~as---eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~ 103 (175)
..+..|++.... .+..++.|+...|.+.+. -.+.-+...+.+.|...++..|+.++|..|++.++++.
T Consensus 183 ~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~~ 254 (334)
T 1in4_A 183 KELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDD 254 (334)
T ss_dssp HHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCc
Confidence 345556654431 145788888887766432 23333444566677777788999999999999987653
No 73
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=56.59 E-value=59 Score=24.22 Aligned_cols=28 Identities=21% Similarity=0.187 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCCccChhhHHHHHHHc----CCC
Q 030547 74 EASDKCQKEKRKTINGDDLLWAMATL----GFE 102 (175)
Q Consensus 74 eA~~~~~~~kRKTI~~eDVl~AL~~L----gF~ 102 (175)
.|....- ++.-+|+.+++..+|..+ |+.
T Consensus 80 ~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~ 111 (174)
T 2i7a_A 80 HVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIF 111 (174)
T ss_dssp HHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCC
T ss_pred HHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCC
Confidence 5666777 777899999999999999 875
No 74
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=56.01 E-value=33 Score=24.97 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=31.9
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcC
Q 030547 50 GKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (175)
Q Consensus 50 ~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (175)
..+|.++..+|.+ |...|...+...|+.+||+.||-+-+
T Consensus 80 ~~~s~~~~~vL~~------------A~~~a~~~~~~~i~~eHlLlall~~~ 118 (146)
T 3fh2_A 80 IPFTPRAKKVLEL------------SLREGLQMGHKYIGTEFLLLGLIREG 118 (146)
T ss_dssp CCBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHH------------HHHHHHHcCCCcCcHHHHHHHHHhCC
Confidence 4588888888875 67788889999999999999986543
No 75
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=55.97 E-value=41 Score=22.17 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=47.1
Q ss_pred CchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCCccChhhHHHHHHHc---C
Q 030547 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFIT---------SEASDKCQKEKRKTINGDDLLWAMATL---G 100 (175)
Q Consensus 33 LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~Lt---------seA~~~~~~~kRKTI~~eDVl~AL~~L---g 100 (175)
+....|.++++..=. +..|+-+- |+.++. ..+....-.++.-.|+.+++..+|..+ |
T Consensus 6 ~s~~ei~~~~~~~d~-~g~i~~~e----------F~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g 74 (109)
T 5pal_A 6 LKADDINKAISAFKD-PGTFDYKR----------FFHLVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHG 74 (109)
T ss_dssp SCHHHHHHHHHHTCS-TTCCCHHH----------HHHHHTCTTCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTC
T ss_pred CCHHHHHHHHHHhCC-CCcCcHHH----------HHHHHhhccCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcC
Confidence 566778888887644 55666432 333321 245566667778899999999999998 6
Q ss_pred CCcchHHHHHHHHHH
Q 030547 101 FEDYIDPLKAYLMRY 115 (175)
Q Consensus 101 F~~yv~~Lk~~L~~y 115 (175)
..--.+.++..+..+
T Consensus 75 ~~~~~~~~~~~~~~~ 89 (109)
T 5pal_A 75 RDLNDTETKALLAAG 89 (109)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh
Confidence 655455555555443
No 76
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=55.55 E-value=19 Score=28.29 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhcCCCccChhhHHHHHHHc
Q 030547 67 FISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (175)
Q Consensus 67 FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (175)
-|.-|...|...|..+++.+|+.+||..|++++
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 456677788888999999999999999999754
No 77
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=52.27 E-value=27 Score=25.94 Aligned_cols=61 Identities=2% Similarity=-0.001 Sum_probs=37.3
Q ss_pred hhHHHHHHHhhCC-CCCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccChhhHHHHHH
Q 030547 35 IANISRIMKKALP-ANGKIAKDAKDTVQECVS----EFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (175)
Q Consensus 35 ~A~V~RImK~~LP-~~~kISkDA~~al~~~as----eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (175)
...+.++++..+. .+..++.++.+.|.+.+. +.+..|. .+...+..++ ++|+.+||..+|+
T Consensus 176 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~-~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 176 DDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLD-RLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp GGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHH-HHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHH-HHHHHHHHhC-CCCcHHHHHHHhh
Confidence 3445555555442 245789999888877653 3344333 3334454444 4699999998875
No 78
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=52.26 E-value=40 Score=24.04 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=29.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHH
Q 030547 50 GKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (175)
Q Consensus 50 ~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (175)
..+|..++.+|.+ |...+...+...|+.+|++.||-+
T Consensus 78 ~~~s~~~~~~l~~------------A~~~A~~~~~~~i~~ehLLlall~ 114 (143)
T 1k6k_A 78 TQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFS 114 (143)
T ss_dssp CEECHHHHHHHHH------------HHHHHHSSSCSCBCHHHHHHHHTT
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHh
Confidence 3567777766664 778888889999999999999964
No 79
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=52.21 E-value=20 Score=26.17 Aligned_cols=63 Identities=8% Similarity=0.022 Sum_probs=41.2
Q ss_pred CchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHH
Q 030547 33 LPIANISRIMKKALP-ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAM 96 (175)
Q Consensus 33 LP~A~V~RImK~~LP-~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL 96 (175)
|....+..+++..+. .+..++.++...|.+.+.=-..++-......+ ..++++|+.+||.+++
T Consensus 185 l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~-~~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 185 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAML 248 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH-TTTTSSBCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-hccCceecHHHHHHHh
Confidence 445566666665553 24578999988888877655555554444333 3345689999998876
No 80
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=50.88 E-value=36 Score=26.66 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=49.7
Q ss_pred CchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhH
Q 030547 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92 (175)
Q Consensus 33 LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDV 92 (175)
++.+-+.|+.+.+.. .-|.|+-..-+...+..=+.-|.-.|.+.|+.++|.+|...|+
T Consensus 3 m~~~~~e~lFR~aa~--LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 3 MKVAEFERLFRQAAG--LDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp SCHHHHHHHHHHHHC--CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred CCHHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 567789999999974 5677888888888888888888888999999999999999885
No 81
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=50.72 E-value=72 Score=26.68 Aligned_cols=69 Identities=9% Similarity=0.065 Sum_probs=45.7
Q ss_pred chhHHHHHHHhhCCC-CCcccHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc------------CCCccChhhHHHHH
Q 030547 34 PIANISRIMKKALPA-NGKIAKDAKDTVQECVSE----FISFITSEASDKCQKE------------KRKTINGDDLLWAM 96 (175)
Q Consensus 34 P~A~V~RImK~~LP~-~~kISkDA~~al~~~ase----FI~~LtseA~~~~~~~------------kRKTI~~eDVl~AL 96 (175)
+......|++..+.. +..++.++...|.+.+.- -|..|...|...+.++ ....|+.+|+..|+
T Consensus 283 ~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al 362 (389)
T 3vfd_A 283 NEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESL 362 (389)
T ss_dssp CHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHH
Confidence 344555666665543 356888888877776543 4556666666555554 45689999999999
Q ss_pred HHcCCC
Q 030547 97 ATLGFE 102 (175)
Q Consensus 97 ~~LgF~ 102 (175)
+...-.
T Consensus 363 ~~~~~s 368 (389)
T 3vfd_A 363 KKIKRS 368 (389)
T ss_dssp HHCCCS
T ss_pred HHcCCC
Confidence 976543
No 82
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=49.27 E-value=13 Score=24.95 Aligned_cols=23 Identities=9% Similarity=-0.015 Sum_probs=19.2
Q ss_pred cChhhHHHHHHHcCCCcchHHHH
Q 030547 87 INGDDLLWAMATLGFEDYIDPLK 109 (175)
Q Consensus 87 I~~eDVl~AL~~LgF~~yv~~Lk 109 (175)
=+++||..-|+.+||++|++...
T Consensus 5 Ws~~~V~~WL~~lgl~~Y~~~F~ 27 (76)
T 2f3n_A 5 WSKFDVGDWLESIHLGEHRDRFE 27 (76)
T ss_dssp CCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHH
Confidence 47899999999999998887643
No 83
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.17 E-value=11 Score=34.21 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhcCCCccChhhHHHHHHHc
Q 030547 68 ISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (175)
Q Consensus 68 I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (175)
|.-|..+|...|.+++|+.|+.+|++.|++++
T Consensus 419 I~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 419 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 56777888888999999999999999999753
No 84
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=48.24 E-value=15 Score=24.81 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=37.7
Q ss_pred CCcccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCccChhhHHHHHHHcC
Q 030547 49 NGKIAKDAKDTVQECVSEFISF-ITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (175)
Q Consensus 49 ~~kISkDA~~al~~~aseFI~~-LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (175)
.+.++.||...|.+ +--||.= +-......|...|...||.+.+..|-+.++
T Consensus 3 ~l~Wt~EAe~~Lkk-IP~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~~ 54 (63)
T 2kru_A 3 ELSWTAEAEKMLGK-VPFFVRKKVRKNTDNYAREIGEPVVTADVFRKAKEHLG 54 (63)
T ss_dssp CCEECHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHhh
Confidence 45788899888887 3345443 334445788999999999999999876654
No 85
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=46.69 E-value=11 Score=34.40 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=42.3
Q ss_pred HhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC--hhhHHHHHHHc
Q 030547 43 KKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTIN--GDDLLWAMATL 99 (175)
Q Consensus 43 K~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~--~eDVl~AL~~L 99 (175)
|+++.+.--|-+|.+.||++||...=.||.......-.+++++++. -.+|.++|..+
T Consensus 427 Ke~i~~~~ei~~ei~~a~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (530)
T 2zbk_B 427 KESIAEVENIEKEIKNALMEVARKLKQYLSEKRKEQEAKKKLLAYLKYIPEVSRSLATF 485 (530)
T ss_dssp CSCBCCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444468899999999999999999988766665556555554 46788888864
No 86
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=46.60 E-value=32 Score=30.07 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=33.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCC
Q 030547 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGF 101 (175)
Q Consensus 51 kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF 101 (175)
+++..++.+|.. |.+.|.+.+...|.++|+|.||=+-+=
T Consensus 5 ~ft~~a~~al~~------------A~~~A~~~~h~~v~~eHLLlaLl~~~~ 43 (468)
T 3pxg_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREGE 43 (468)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSCC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhccC
Confidence 688888888875 788899999999999999999976543
No 87
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=46.27 E-value=15 Score=24.90 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=20.2
Q ss_pred ccChhhHHHHHHHcCCCcchHHHH
Q 030547 86 TINGDDLLWAMATLGFEDYIDPLK 109 (175)
Q Consensus 86 TI~~eDVl~AL~~LgF~~yv~~Lk 109 (175)
.=+++||..-|+.+||++|++...
T Consensus 9 ~Ws~~~V~~WL~~lgl~~Y~~~F~ 32 (81)
T 3bq7_A 9 LWGTEEVAAWLEHLSLCEYKDIFT 32 (81)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCCCHHHHHHHH
Confidence 457899999999999999987653
No 88
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=45.58 E-value=30 Score=27.73 Aligned_cols=64 Identities=11% Similarity=0.115 Sum_probs=53.9
Q ss_pred Ccccc--cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhH
Q 030547 27 REQDR--YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92 (175)
Q Consensus 27 ~~~d~--~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDV 92 (175)
.+++. -+|.+-+.|+.+.+.. .-|.|+-..-+...+..=+.-|.-.|.+.|+.++|-+|...|+
T Consensus 19 ~~~~Mm~vmg~~kferlFR~aag--LDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 19 KIETMLRPKGFDKLDHYFRTELD--IDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp --CCTTSCTTHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred HHHHHHhcCChHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 44555 7899999999999984 5678888888888888888888888999999999999999885
No 89
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=45.43 E-value=25 Score=27.35 Aligned_cols=64 Identities=11% Similarity=0.108 Sum_probs=38.7
Q ss_pred HHHHHHHhhCCCCCcccHHH-HHHHHHHH----HHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCC
Q 030547 37 NISRIMKKALPANGKIAKDA-KDTVQECV----SEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGF 101 (175)
Q Consensus 37 ~V~RImK~~LP~~~kISkDA-~~al~~~a----seFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF 101 (175)
....|++..+. ...++.|+ ...+.+.. .--|..+...|...|...++++|+.+||..|++++-.
T Consensus 186 ~r~~il~~~~~-~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 186 GREQILKVHMR-RVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp HHHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh-cCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHhc
Confidence 34445555543 23444443 23333321 1234455567777888888999999999999987643
No 90
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=45.14 E-value=62 Score=29.58 Aligned_cols=49 Identities=31% Similarity=0.455 Sum_probs=31.7
Q ss_pred HHhcCCCccChhhHHHHHHHcCCC-cchHHHHHH------HHHHHHHhhcccCCCC
Q 030547 79 CQKEKRKTINGDDLLWAMATLGFE-DYIDPLKAY------LMRYREMEGDTKGSAR 127 (175)
Q Consensus 79 ~~~~kRKTI~~eDVl~AL~~LgF~-~yv~~Lk~~------L~~yre~~~~kk~~~k 127 (175)
+++.++++|+++++.+.-...||+ |....+-+. .+.|.+..++.++.+|
T Consensus 371 ~~~~~~~~l~G~~af~LyDTyGfP~dLt~eia~e~g~~vD~~gF~~~m~~q~~rar 426 (465)
T 1yfs_A 371 ALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERAR 426 (465)
T ss_dssp HHHTTCCEECHHHHHHHHHTSCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCcCCHHHHHhhhhccCCCHHHHHHHHHHcCCeeCHHHHHHHHHHHHHHHH
Confidence 344467789999999999999997 444443221 3456665555554444
No 91
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=45.03 E-value=72 Score=21.85 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=27.2
Q ss_pred HHHHHHhcCCCccChhhHHHHHHHcCCCcchHHHHHHHH
Q 030547 75 ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 113 (175)
Q Consensus 75 A~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~ 113 (175)
+....-.++.-.|+.+++..+|..+|..--.+.++..+.
T Consensus 101 ~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~ 139 (161)
T 3fwb_A 101 AFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIE 139 (161)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 445555667778999999999999987544444544443
No 92
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.35 E-value=20 Score=32.35 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=42.9
Q ss_pred ccCchhH-HHHHHHhhCCCCCcccHHH-HHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccChhhHHHHHHH
Q 030547 31 RYLPIAN-ISRIMKKALPANGKIAKDA-KDTVQECVS----EFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (175)
Q Consensus 31 ~~LP~A~-V~RImK~~LP~~~kISkDA-~~al~~~as----eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (175)
+.||-.. -..|++-.+. ++.++.|. .+.|.+.+. -=|..|..+|...|.+++|..|+.+|+..|+++
T Consensus 350 v~lPd~~~R~~Il~~~l~-~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 350 FENPDLSTKKKILGIHTS-KMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp CCCCCHHHHHHHHHHHHT-TSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHhc-CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 4456332 3345554443 34555542 344444332 346677788888999999999999999999874
No 93
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.18 E-value=20 Score=31.96 Aligned_cols=32 Identities=31% Similarity=0.289 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhcCCCccChhhHHHHHHH
Q 030547 67 FISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (175)
Q Consensus 67 FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (175)
=|..|..+|.-.|.+++|..|+.+|+..|+++
T Consensus 390 Di~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 390 DIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 36667778888899999999999999999875
No 94
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=44.17 E-value=65 Score=21.11 Aligned_cols=81 Identities=16% Similarity=0.032 Sum_probs=45.9
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHc---CCCcchHHH
Q 030547 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPL 108 (175)
Q Consensus 32 ~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L---gF~~yv~~L 108 (175)
.+...-|.+|++..= .+..|+-+--..+......-... ...+....-.++.-+|+.+++..+|..+ |..--...+
T Consensus 6 ~~~~~e~~~~~~~~d-~~g~i~~~eF~~~~~~~~~~~~~-l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~ 83 (109)
T 1bu3_A 6 ILADADVAAALKACE-AADSFNYKAFFAKVGLTAKSADD-IKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAET 83 (109)
T ss_dssp SSCHHHHHHHHHHTC-STTCCCHHHHHHHHTGGGSCHHH-HHHHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHH
T ss_pred cCCHHHHHHHHHHhC-CCCcCcHHHHHHHHHcChhhHHH-HHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHH
Confidence 456677888888764 45567654222111100000001 1245556667778899999999999999 554334455
Q ss_pred HHHHHH
Q 030547 109 KAYLMR 114 (175)
Q Consensus 109 k~~L~~ 114 (175)
+..+..
T Consensus 84 ~~~~~~ 89 (109)
T 1bu3_A 84 KAFLKA 89 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 95
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=43.64 E-value=32 Score=24.76 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=28.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHH
Q 030547 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (175)
Q Consensus 51 kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (175)
.+|..+..+|.. |...|...+...|+.+|++.||-+
T Consensus 79 ~~s~~~~~vL~~------------A~~~A~~~~~~~i~~ehlLlall~ 114 (150)
T 2y1q_A 79 HYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIR 114 (150)
T ss_dssp EECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHh
Confidence 566666666653 677888888999999999999864
No 96
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.45 E-value=21 Score=31.73 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhcCCCccChhhHHHHHHH
Q 030547 67 FISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (175)
Q Consensus 67 FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (175)
=|..|..+|...|.+++|..|+.+|+..|+++
T Consensus 357 Di~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 357 DVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 46677788888999999999999999999875
No 97
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=42.40 E-value=1.1e+02 Score=24.84 Aligned_cols=68 Identities=7% Similarity=0.034 Sum_probs=48.4
Q ss_pred CchhHHHHHHHhhCC---CCCcccHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcC
Q 030547 33 LPIANISRIMKKALP---ANGKIAKDAKDTVQECVS---------EFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (175)
Q Consensus 33 LP~A~V~RImK~~LP---~~~kISkDA~~al~~~as---------eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (175)
|....+..|++..+. ....++.++...+.+.+. -++..+...|...+...++.+|+.+||..++.++.
T Consensus 215 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 215 YKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 445566667654321 123588888888887776 35666767777788888889999999999988764
No 98
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.34 E-value=19 Score=32.01 Aligned_cols=31 Identities=35% Similarity=0.292 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhcCCCccChhhHHHHHHH
Q 030547 68 ISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (175)
Q Consensus 68 I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (175)
|..|..+|.-.|.+++|..|+.+|+..|++.
T Consensus 383 i~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 383 IAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 6777788888999999999999999999864
No 99
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.27 E-value=20 Score=31.90 Aligned_cols=33 Identities=12% Similarity=0.240 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhcCCCccChhhHHHHHHHc
Q 030547 67 FISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (175)
Q Consensus 67 FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (175)
-|..|..+|.-.|.+++++.|+.+|++.|+++.
T Consensus 390 Di~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 390 QLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 466777888888999999999999999999754
No 100
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=41.81 E-value=17 Score=24.58 Aligned_cols=49 Identities=8% Similarity=0.083 Sum_probs=34.8
Q ss_pred CcccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCccChhhHHHHHHHc
Q 030547 50 GKIAKDAKDTVQECVSEFISF-ITSEASDKCQKEKRKTINGDDLLWAMATL 99 (175)
Q Consensus 50 ~kISkDA~~al~~~aseFI~~-LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (175)
+.++.||...|.+. --||.= +-......|...|...||.+.+..|-+.+
T Consensus 3 l~Wt~EAe~~LkkI-P~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~ 52 (62)
T 2l09_A 3 LRWTSEAKTKLKNI-PFFARSQAKARIEQLARQAEQDIVTPELVEQARLEF 52 (62)
T ss_dssp CEECHHHHHHHHTS-CGGGHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHH
Confidence 46788888888773 344433 33344578899999999999998886544
No 101
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=40.79 E-value=39 Score=26.83 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=45.2
Q ss_pred CchhHHHHHHHhhCCC-CCcccHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCC
Q 030547 33 LPIANISRIMKKALPA-NGKIAKDAKDTVQECVSEF---ISFITSEASDKCQKEKRKTINGDDLLWAMATLGFE 102 (175)
Q Consensus 33 LP~A~V~RImK~~LP~-~~kISkDA~~al~~~aseF---I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (175)
++...+..+++..+.. +..++.++...|.+.+.-. +..+...+...|...+...|+.+|+..+++.+...
T Consensus 168 ~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 241 (324)
T 1hqc_A 168 YTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLD 241 (324)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccc
Confidence 4555666666665532 4579999988888765222 22233333444555567789999999999877653
No 102
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=40.46 E-value=13 Score=26.70 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=19.9
Q ss_pred ccChhhHHHHHHHcCCCcchHHH
Q 030547 86 TINGDDLLWAMATLGFEDYIDPL 108 (175)
Q Consensus 86 TI~~eDVl~AL~~LgF~~yv~~L 108 (175)
.-+.+||..-|+++||++|++..
T Consensus 19 ~Ws~edV~~WL~~~Gl~~Y~~~F 41 (97)
T 2d8c_A 19 YWSPKKVADWLLENAMPEYCEPL 41 (97)
T ss_dssp SCCTTHHHHHHHHTTCTTTTTTT
T ss_pred hCCHHHHHHHHHHcCCHHHHHHH
Confidence 34899999999999999998765
No 103
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=39.10 E-value=58 Score=19.08 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=23.7
Q ss_pred HHHHhcCCCccChhhHHHHHHHcCCCcchHHHHHHHH
Q 030547 77 DKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 113 (175)
Q Consensus 77 ~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~ 113 (175)
...-.++.-.|+.+++..+|..+|..--...++..+.
T Consensus 8 ~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~ 44 (67)
T 1tiz_A 8 EKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFE 44 (67)
T ss_dssp HHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3444566667888888888888886544444444433
No 104
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=38.48 E-value=41 Score=25.85 Aligned_cols=38 Identities=13% Similarity=0.039 Sum_probs=32.0
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCccChhhHHHHHHHc
Q 030547 50 GKIAKDAKDTVQECVSEFISFITSEASDKCQ-KEKRKTINGDDLLWAMATL 99 (175)
Q Consensus 50 ~kISkDA~~al~~~aseFI~~LtseA~~~~~-~~kRKTI~~eDVl~AL~~L 99 (175)
..+|.+++.+|++ |...|+ +-+...|+.+||+.||-+-
T Consensus 97 ~~~S~~l~~vL~~------------A~~~A~l~~gd~~I~teHLLLALl~~ 135 (171)
T 3zri_A 97 PAFSPLLVELLQE------------AWLLSSTELEQAELRSGAIFLAALTR 135 (171)
T ss_dssp CEECHHHHHHHHH------------HHHHHHTTTCCSSBCHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHH------------HHHHHHHHcCCCEEcHHHHHHHHHhC
Confidence 4588888888885 788889 9999999999999998543
No 105
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=38.28 E-value=95 Score=21.30 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCccChhhHHHHHHHcCCCcchHHHHHHHHH
Q 030547 74 EASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 114 (175)
Q Consensus 74 eA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~~ 114 (175)
.|....-.++.-.|+.+++..+|..+|..-=...+...+..
T Consensus 87 ~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~ 127 (148)
T 1exr_A 87 EAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIRE 127 (148)
T ss_dssp HHHHHHSTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 35556666777789999999999999864333444444443
No 106
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=37.75 E-value=1.1e+02 Score=21.96 Aligned_cols=63 Identities=16% Similarity=0.258 Sum_probs=37.5
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCC
Q 030547 38 ISRIMKKALPANGKIAKDAKDTVQECVS---EFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFE 102 (175)
Q Consensus 38 V~RImK~~LP~~~kISkDA~~al~~~as---eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (175)
|.+-++.-.. .-++.+.+...+.+..+ +-+..| .++....-.++.-+|+.+++..+|+.+|+.
T Consensus 6 ~~~~l~~~~~-~~~l~~~~l~~~~~~l~~~~~~~~~l-~~~F~~~D~d~~G~i~~~El~~~l~~~g~~ 71 (180)
T 3mse_B 6 VLNNMKSYMK-HSNIRNIIINIMAHELSVINNHIKYI-NELFYKLDTNHNGSLSHREIYTVLASVGIK 71 (180)
T ss_dssp HHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCTTCSSSEEHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHH-HhHHHHHHHHHHHHHccCCHHHHHHH-HHHHHHhCCCCCCcCCHHHHHHHHHHcCCC
Confidence 3344444433 23555655555544332 222222 234455666777899999999999999986
No 107
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=36.90 E-value=78 Score=23.47 Aligned_cols=80 Identities=10% Similarity=0.153 Sum_probs=41.6
Q ss_pred ccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCCcchHHHH
Q 030547 31 RYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEF-ISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLK 109 (175)
Q Consensus 31 ~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseF-I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk 109 (175)
..|....+.|+-+ -. ...++.+.+...|.+..+.- +..| .++....-.++.-+|+.+++..+|..+|+.--...+.
T Consensus 20 ~~l~~~~~~~l~~-f~-~~~~lk~~~l~~i~~~l~~~e~~~l-~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~ 96 (197)
T 3pm8_A 20 VELSSTLLKNLKN-FK-KENELKKIALTIIAKHLCDVEINNL-RNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIH 96 (197)
T ss_dssp CCCCTTHHHHHHH-TT-TSCHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHCTTCSSEECHHHHHHHHHHHC----CHHHH
T ss_pred CCCCHHHHHHHHH-HH-HccHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHH
Confidence 3455555666544 22 22355555555444332221 2222 2344455567777999999999999998853334444
Q ss_pred HHHH
Q 030547 110 AYLM 113 (175)
Q Consensus 110 ~~L~ 113 (175)
..+.
T Consensus 97 ~l~~ 100 (197)
T 3pm8_A 97 QVLR 100 (197)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 108
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=36.19 E-value=24 Score=24.67 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=19.9
Q ss_pred ccChhhHHHHHHHc-CCCcchHHHH
Q 030547 86 TINGDDLLWAMATL-GFEDYIDPLK 109 (175)
Q Consensus 86 TI~~eDVl~AL~~L-gF~~yv~~Lk 109 (175)
.-+.+||..-|+.+ ||++|++..+
T Consensus 16 ~Ws~edV~~wL~~l~gl~~y~~~F~ 40 (89)
T 1kw4_A 16 SWSVDDVSNFIRELPGCQDYVDDFI 40 (89)
T ss_dssp GCCHHHHHHHHHTSTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCcChHHHHHHHH
Confidence 45789999999999 9998876554
No 109
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=36.00 E-value=45 Score=23.81 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=20.6
Q ss_pred HHHHHHHhcCCCccChhhHHHHHH
Q 030547 74 EASDKCQKEKRKTINGDDLLWAMA 97 (175)
Q Consensus 74 eA~~~~~~~kRKTI~~eDVl~AL~ 97 (175)
.|...+...+...|+.+|++.||-
T Consensus 93 ~A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 93 LCDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp HHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHcCCCeecHHHHHHHHH
Confidence 467777778889999999999986
No 110
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=35.57 E-value=1.1e+02 Score=21.33 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCCccChhhHHHHHHHcCCCcchHHHHHHHHH
Q 030547 74 EASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 114 (175)
Q Consensus 74 eA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~~ 114 (175)
.|....-.++.-+|+.+++..+|..+|..--...++..+..
T Consensus 87 ~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~ 127 (148)
T 2lmt_A 87 EAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIRE 127 (148)
T ss_dssp HHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHH
Confidence 46667777888899999999999999987666666655544
No 111
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=35.49 E-value=56 Score=30.15 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=32.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcC
Q 030547 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (175)
Q Consensus 51 kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (175)
+++..++.+|.. |.+.|.+.+...|.++|++.||=+-+
T Consensus 5 ~~t~~a~~~l~~------------A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (758)
T 3pxi_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (758)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhcc
Confidence 688888888875 78889999999999999999996654
No 112
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=35.42 E-value=57 Score=28.62 Aligned_cols=67 Identities=10% Similarity=0.237 Sum_probs=44.7
Q ss_pred CchhHHHHHHHhhCC--------CCCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc--CCCccChhhHHHHHHH
Q 030547 33 LPIANISRIMKKALP--------ANGKIAKDAKDTVQECVS----EFISFITSEASDKCQKE--KRKTINGDDLLWAMAT 98 (175)
Q Consensus 33 LP~A~V~RImK~~LP--------~~~kISkDA~~al~~~as----eFI~~LtseA~~~~~~~--kRKTI~~eDVl~AL~~ 98 (175)
|+...+..|++..+. .+..|+.++.+.|.+.+. ..++.|-. |...|... ++++|+.+||..++..
T Consensus 165 l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~-a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 165 LSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEM-MADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHH-HHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHH-HHHhcccccCCCCccCHHHHHHHHhh
Confidence 566667777777654 245799999999988753 33444432 33344322 5678999999999986
Q ss_pred cC
Q 030547 99 LG 100 (175)
Q Consensus 99 Lg 100 (175)
.-
T Consensus 244 ~~ 245 (447)
T 3pvs_A 244 RS 245 (447)
T ss_dssp CC
T ss_pred hh
Confidence 53
No 113
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=35.36 E-value=45 Score=21.74 Aligned_cols=35 Identities=11% Similarity=0.147 Sum_probs=23.6
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHH
Q 030547 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEF 67 (175)
Q Consensus 32 ~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseF 67 (175)
.+..++|.|++...- ....|+.|.++-|.+++.++
T Consensus 11 GVS~sTVSrvLng~~-~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 11 GVSRTTASYVINGKA-KQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp TSCHHHHHHHHHTCT-TTTTCTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHcCCC-CCCCCCHHHHHHHHHHHHHh
Confidence 466788888887541 11268888888887776654
No 114
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=35.22 E-value=77 Score=21.93 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCccChhhHHHHHHHcCCCcchHHHHHHHH
Q 030547 74 EASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 113 (175)
Q Consensus 74 eA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~ 113 (175)
.|....-.++.-+|+.+++..+|..+|..-=...++..+.
T Consensus 89 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~ 128 (159)
T 2ovk_C 89 EAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFT 128 (159)
T ss_dssp HHHHHTCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3556666777789999999999999986433344444443
No 115
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=34.30 E-value=1.7e+02 Score=23.14 Aligned_cols=67 Identities=13% Similarity=0.072 Sum_probs=41.6
Q ss_pred CchhHHHHHHHhhCC-CCCcccHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCC-CccChhhHHHHHHHcC
Q 030547 33 LPIANISRIMKKALP-ANGKIAKDAKDTVQECV----SEFISFITSEASDKCQKEKR-KTINGDDLLWAMATLG 100 (175)
Q Consensus 33 LP~A~V~RImK~~LP-~~~kISkDA~~al~~~a----seFI~~LtseA~~~~~~~kR-KTI~~eDVl~AL~~Lg 100 (175)
++...+..+++..+. .+..|+.++...|.+.+ ...+..|-..+. .+.+.++ ++|+.+||..++..+.
T Consensus 192 ~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~-~~~~~~~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 192 LDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASK-GAQYLGDGKNITSTQVEELAGVVP 264 (353)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHH-HHHHHCSCCCCCHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH-hcCCCccCccccHHHHHHHhCCCC
Confidence 455556666665442 35679999988888764 344444443322 3333333 3899999999887543
No 116
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=34.05 E-value=74 Score=20.74 Aligned_cols=79 Identities=11% Similarity=0.024 Sum_probs=42.5
Q ss_pred CchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHc---CCCcchHHHH
Q 030547 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPLK 109 (175)
Q Consensus 33 LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L---gF~~yv~~Lk 109 (175)
+...-|.++++..= .+..|+-+--..+......-... ...+....-.++.-+|+.+++..+|..+ |..--...++
T Consensus 6 ~t~~e~~~~~~~~d-~~g~i~~~eF~~~~~~~~~~~~~-l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~ 83 (109)
T 1rwy_A 6 LSAEDIKKAIGAFT-AADSFDHKKFFQMVGLKKKSADD-VKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETK 83 (109)
T ss_dssp SCHHHHHHHHHTTC-STTCCCHHHHHHHHTGGGSCHHH-HHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHH
T ss_pred CCHHHHHHHHHHcC-CCCcEeHHHHHHHHhcCcchHHH-HHHHHHHHCCCCCCeEcHHHHHHHHHHHhccCCCCCHHHHH
Confidence 44556777777653 44566643222111100000011 1245556667777899999999999999 5443334444
Q ss_pred HHHH
Q 030547 110 AYLM 113 (175)
Q Consensus 110 ~~L~ 113 (175)
..+.
T Consensus 84 ~~~~ 87 (109)
T 1rwy_A 84 TLMA 87 (109)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 117
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=33.61 E-value=65 Score=21.09 Aligned_cols=71 Identities=15% Similarity=0.300 Sum_probs=42.7
Q ss_pred CchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhcCCCccChhhHHHHHHHc---C
Q 030547 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFI---------TSEASDKCQKEKRKTINGDDLLWAMATL---G 100 (175)
Q Consensus 33 LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~L---------tseA~~~~~~~kRKTI~~eDVl~AL~~L---g 100 (175)
+...-|.++++..= .+..|+-+ +|+.++ ...+....-.++.-+|+.+++..+|..+ |
T Consensus 7 ~t~~e~~~~~~~~d-~~g~i~~~----------ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g 75 (110)
T 1pva_A 7 LKADDIKKALDAVK-AEGSFNHK----------KFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADG 75 (110)
T ss_dssp SCHHHHHHHHHHTC-STTCCCHH----------HHHHHHTCTTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTC
T ss_pred CCHHHHHHHHHhcC-CCCcCcHH----------HHHHHHccCcchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcC
Confidence 45566777777653 34456543 222222 1245566667778899999999999999 5
Q ss_pred CCcchHHHHHHHHH
Q 030547 101 FEDYIDPLKAYLMR 114 (175)
Q Consensus 101 F~~yv~~Lk~~L~~ 114 (175)
..--...++..+..
T Consensus 76 ~~~~~~~~~~~~~~ 89 (110)
T 1pva_A 76 RDLTDAETKAFLKA 89 (110)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 44333444444443
No 118
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=33.40 E-value=73 Score=20.97 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=24.9
Q ss_pred HHHHhcCCCccChhhHHHHHHHcCCCcchHHHHHHH
Q 030547 77 DKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 112 (175)
Q Consensus 77 ~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L 112 (175)
...-.++.-+|+.+++..+|..+|+.-=...++..+
T Consensus 36 ~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~ 71 (94)
T 2kz2_A 36 RVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 71 (94)
T ss_dssp HHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 344566777899999999999998753334444443
No 119
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=33.29 E-value=39 Score=27.26 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=45.6
Q ss_pred hhHHHHHHHhhCCC-CCcccHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCC
Q 030547 35 IANISRIMKKALPA-NGKIAKDAKDTVQECVSE---FISFITSEASDKCQKEKRKTINGDDLLWAMATLGFE 102 (175)
Q Consensus 35 ~A~V~RImK~~LP~-~~kISkDA~~al~~~ase---FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (175)
...+..|++..+.. +..++.++...|.+.+.- .+..+...+...|...++.+|+.+||..++..+++.
T Consensus 186 ~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 186 DSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp HHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCc
Confidence 45555555554431 456899998888874322 222333445567777788899999999999987764
No 120
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=33.25 E-value=12 Score=24.60 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=18.0
Q ss_pred cChhhHHHHHHHcCCCcchHHH
Q 030547 87 INGDDLLWAMATLGFEDYIDPL 108 (175)
Q Consensus 87 I~~eDVl~AL~~LgF~~yv~~L 108 (175)
=+.+||..-|+.+||++|++..
T Consensus 7 Ws~~~V~~WL~~~gl~~y~~~F 28 (74)
T 2gle_A 7 WSVQQVSHWLVGLSLDQYVSEF 28 (74)
T ss_dssp CCSGGGHHHHHHTTTHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999999988876643
No 121
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=32.57 E-value=18 Score=27.86 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhcCCCccChhhHHHHHHHc
Q 030547 67 FISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (175)
Q Consensus 67 FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (175)
-|.-|...|...|..+++.+|+.+|+..|++++
T Consensus 217 ~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 217 DIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 344555566667777778889999998888754
No 122
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=32.54 E-value=98 Score=24.28 Aligned_cols=60 Identities=10% Similarity=0.107 Sum_probs=38.2
Q ss_pred cccHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcC------------CCccChhhHHHHHHHcCCCcchHHHHH
Q 030547 51 KIAKDAKDTVQECVSE----FISFITSEASDKCQKEK------------RKTINGDDLLWAMATLGFEDYIDPLKA 110 (175)
Q Consensus 51 kISkDA~~al~~~ase----FI~~LtseA~~~~~~~k------------RKTI~~eDVl~AL~~LgF~~yv~~Lk~ 110 (175)
.++.++...|.+.+.- -|..|..+|...+.++. ...|+.+|+..|++.+.-.-..+.++.
T Consensus 208 ~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~ 283 (297)
T 3b9p_A 208 PLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNS 283 (297)
T ss_dssp CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHHH
Confidence 4777777777765543 33355555555555443 358999999999998765544444433
No 123
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=32.38 E-value=58 Score=22.82 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=17.4
Q ss_pred HHHHHHhcCCCccChhhHHHHHHHcCC
Q 030547 75 ASDKCQKEKRKTINGDDLLWAMATLGF 101 (175)
Q Consensus 75 A~~~~~~~kRKTI~~eDVl~AL~~LgF 101 (175)
|....-.++.-.|+.+++..+|..+|+
T Consensus 45 ~F~~~D~d~~G~I~~~el~~~l~~~g~ 71 (135)
T 3h4s_E 45 GFSLLADPERHLITAESLRRNSGILGI 71 (135)
T ss_dssp HHHHHSBTTTTBBCHHHHHHHGGGGTC
T ss_pred HHHHHCCCCCCcCCHHHHHHHHHHhCC
Confidence 334445556667777777777777775
No 124
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=31.93 E-value=1.2e+02 Score=20.74 Aligned_cols=81 Identities=14% Similarity=0.062 Sum_probs=44.5
Q ss_pred CchhHHHHHHHhhCCC-CCcccHHH-HHHHHHHHHHH-HHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCCcchHHHH
Q 030547 33 LPIANISRIMKKALPA-NGKIAKDA-KDTVQECVSEF-ISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLK 109 (175)
Q Consensus 33 LP~A~V~RImK~~LP~-~~kISkDA-~~al~~~aseF-I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk 109 (175)
++...|.++++..=.+ +..|+-+- ..++......- ..--...|....-.++.-.|+.+++..+|..+|..-=...+.
T Consensus 39 ~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~ 118 (143)
T 2obh_A 39 PKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQ 118 (143)
T ss_dssp CCHHHHHHHHHHHTTTCCSEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCeeeHHHHHHHHHHHhccccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHH
Confidence 4555677777765332 34566532 22222211110 001123455666667777899999999999998653334455
Q ss_pred HHHH
Q 030547 110 AYLM 113 (175)
Q Consensus 110 ~~L~ 113 (175)
..+.
T Consensus 119 ~~~~ 122 (143)
T 2obh_A 119 EMID 122 (143)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 125
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=31.74 E-value=1.1e+02 Score=19.96 Aligned_cols=28 Identities=11% Similarity=-0.025 Sum_probs=22.4
Q ss_pred HHHHHHhcCCCccChhhHHHHHHHcCCC
Q 030547 75 ASDKCQKEKRKTINGDDLLWAMATLGFE 102 (175)
Q Consensus 75 A~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (175)
+....-.++.-.|+.+++..+|..+|+.
T Consensus 29 ~F~~~D~d~~G~i~~~el~~~l~~~g~~ 56 (105)
T 1wlz_A 29 EFENFDTMKTNTISREEFRAICNRRVQI 56 (105)
T ss_dssp HHHHHCTTCSSCBCHHHHHHHHHHHTCC
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 4555566777789999999999999875
No 126
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=31.58 E-value=1.1e+02 Score=19.96 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=45.5
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhcCCCccChhhHHHHHHHc---
Q 030547 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFI---------TSEASDKCQKEKRKTINGDDLLWAMATL--- 99 (175)
Q Consensus 32 ~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~L---------tseA~~~~~~~kRKTI~~eDVl~AL~~L--- 99 (175)
.+...-|.++++..= .+..|+-+ +|+.++ ...+....-.++.-.|+.+++..+|..+
T Consensus 6 ~~~~~ei~~~~~~~D-~~g~i~~~----------eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~ 74 (109)
T 3fs7_A 6 ILSAKDIESALSSCQ-AADSFNYK----------SFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSS 74 (109)
T ss_dssp TSCHHHHHHHHHHTC-STTCCCHH----------HHHHHHTCTTCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTT
T ss_pred cCCHHHHHHHHHhcC-CCCcCcHH----------HHHHHHhcCCCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcc
Confidence 356677888888763 35566653 233322 2245556667777899999999999999
Q ss_pred CCCcchHHHHHHHHH
Q 030547 100 GFEDYIDPLKAYLMR 114 (175)
Q Consensus 100 gF~~yv~~Lk~~L~~ 114 (175)
|..--...++..+..
T Consensus 75 ~~~~~~~~~~~~~~~ 89 (109)
T 3fs7_A 75 ARVLTSAETKAFLAA 89 (109)
T ss_dssp SCCCCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHH
Confidence 554444455544443
No 127
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
Probab=31.37 E-value=2.6e+02 Score=25.88 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=32.0
Q ss_pred HHHHHHHHH-----HHHHHHHhcCCCccChhhHHHHHHHcCCCcchHHHHHHHH
Q 030547 65 SEFISFITS-----EASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 113 (175)
Q Consensus 65 seFI~~Lts-----eA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~ 113 (175)
.||+.++.. .+....-.++.-+|+.+++..+|+.+|+.--...++..+.
T Consensus 595 ~EF~~l~~~~~~l~~~F~~~D~d~dG~Is~~El~~~L~~~G~~ls~~~~~~l~~ 648 (714)
T 3bow_A 595 KEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVA 648 (714)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHTTEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 455555432 4555666677889999999999999986533344444433
No 128
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=30.96 E-value=42 Score=31.69 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=30.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHH
Q 030547 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (175)
Q Consensus 51 kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (175)
+++..++.+|.. |.+.|.+.+...|+++|+|.||=
T Consensus 5 ~~t~~a~~al~~------------A~~~A~~~~h~~i~~eHLLlaLl 39 (854)
T 1qvr_A 5 RWTQAAREALAQ------------AQVLAQRMKHQAIDLPHLWAVLL 39 (854)
T ss_dssp CSCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHH
Confidence 688888888875 78899999999999999999984
No 129
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=30.16 E-value=1.2e+02 Score=20.16 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=29.3
Q ss_pred HHHHHHhcCCCccChhhHHHHHHHcCCCcchHHHHHHHHHH
Q 030547 75 ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (175)
Q Consensus 75 A~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (175)
+....-.++.-.|+.+++..+|..+|..-=...++..+..+
T Consensus 89 ~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (147)
T 4ds7_A 89 AFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREV 129 (147)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 44555567778999999999999998654445555555544
No 130
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=29.64 E-value=1e+02 Score=19.07 Aligned_cols=37 Identities=14% Similarity=0.199 Sum_probs=24.5
Q ss_pred HHHHHhcCCCccChhhHHHHHHHcCCCcchHHHHHHH
Q 030547 76 SDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 112 (175)
Q Consensus 76 ~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L 112 (175)
....-.++.-.|+.+++..+|..+|+.-=...+...+
T Consensus 20 F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 56 (85)
T 2ktg_A 20 FQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIV 56 (85)
T ss_dssp HHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3444566667899999999999888754334444443
No 131
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=29.63 E-value=45 Score=26.93 Aligned_cols=65 Identities=8% Similarity=0.014 Sum_probs=37.2
Q ss_pred cCchhHHHHHHHhhCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHH
Q 030547 32 YLPIANISRIMKKALPA-NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (175)
Q Consensus 32 ~LP~A~V~RImK~~LP~-~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (175)
.++...+..+++..+.. +..++.++...|.+.+.--+..+.......+. ....+|+.+||..++.
T Consensus 177 ~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~-~~~~~i~~~~v~~~~~ 242 (373)
T 1jr3_A 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLG 242 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHH-HTTTCBCHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcCCcccHHHHHHHhC
Confidence 35566677777655432 45789998888877654333333333222222 2245688887766544
No 132
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=29.57 E-value=52 Score=22.54 Aligned_cols=52 Identities=23% Similarity=0.302 Sum_probs=35.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCCcchHHHHHHHHH
Q 030547 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 114 (175)
Q Consensus 51 kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~~ 114 (175)
.++.|-...|.+ |....-.++.-+|+.+++..+|+.+|+.-=...++..+..
T Consensus 29 ~l~~~~~~el~~------------~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~ 80 (100)
T 2lv7_A 29 DIPEDELEEIRE------------AFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQR 80 (100)
T ss_dssp CCCGGGHHHHHH------------HHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHH
T ss_pred cCCHHHHHHHHH------------HHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 456655555543 5566677888899999999999999985333444444433
No 133
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=29.53 E-value=96 Score=18.73 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=17.5
Q ss_pred HHHhcCCCccChhhHHHHHHHcCCC
Q 030547 78 KCQKEKRKTINGDDLLWAMATLGFE 102 (175)
Q Consensus 78 ~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (175)
..-.++.-.|+.+++..+|..+|+.
T Consensus 15 ~~D~d~~G~i~~~el~~~l~~~g~~ 39 (77)
T 2joj_A 15 LFDTNKTGSIDYHELKVAMRALGFD 39 (77)
T ss_dssp HHCCSSSSEEEHHHHHHHHHHHTCC
T ss_pred HhCCCCCCCCcHHHHHHHHHHhCCC
Confidence 3345556678888888888887764
No 134
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=29.38 E-value=19 Score=33.78 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=45.8
Q ss_pred CCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC--hhhHHHHHHH
Q 030547 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTIN--GDDLLWAMAT 98 (175)
Q Consensus 26 ~~~~d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~--~eDVl~AL~~ 98 (175)
|-+-...+|-... =|+++.+.--|-+|.+.||++||...=.||.......-.+++++++. -.+|.++|..
T Consensus 421 v~~~st~vp~~~~---~ke~ia~~~ei~~ei~~a~~~~~r~l~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 492 (621)
T 2q2e_B 421 IHVASINVPFTSE---SKDAIADIPVIKEEIDLAIKEVARKLKHYLSKQSNLKKRREKEIIITKVLPKLAAKVAH 492 (621)
T ss_dssp EEEECSSCCBSSS---SSSSBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHTTSSHHHHTTTTTTT
T ss_pred EEEeecCCCcCCc---chhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444554333 25555544479999999999999999999998776665555555554 3445555543
No 135
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=28.70 E-value=95 Score=19.67 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=25.1
Q ss_pred HHHHHhcCCCccChhhHHHHHHHcCCCcchHHHHHHHH
Q 030547 76 SDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 113 (175)
Q Consensus 76 ~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~ 113 (175)
....-.++.-.|+.+++..+|..+|+.-=...++..+.
T Consensus 26 F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 26 FDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 33444566778999999999999987533344444433
No 136
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=28.52 E-value=81 Score=21.24 Aligned_cols=40 Identities=18% Similarity=0.063 Sum_probs=26.8
Q ss_pred HHHHHHhcCCCccChhhHHHHHHHcCCCcchHHHHHHHHH
Q 030547 75 ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 114 (175)
Q Consensus 75 A~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~~ 114 (175)
+....-.++.-.|+.+++..+|..+|..-=...++..+..
T Consensus 81 ~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~ 120 (143)
T 3j04_B 81 AFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYRE 120 (143)
T ss_dssp HHTTSCSSSCCCCCTTTHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3344445667789999999999999875444445444443
No 137
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=28.21 E-value=42 Score=25.97 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=33.5
Q ss_pred HHHHHhhCCCCCcccHHH-HHHHHHHHHH----HHHHHHHHHHHHHHhcCCCccChhhHHHHH
Q 030547 39 SRIMKKALPANGKIAKDA-KDTVQECVSE----FISFITSEASDKCQKEKRKTINGDDLLWAM 96 (175)
Q Consensus 39 ~RImK~~LP~~~kISkDA-~~al~~~ase----FI~~LtseA~~~~~~~kRKTI~~eDVl~AL 96 (175)
.+|++..+. +..++.|+ ...|.+.+.- -|.-+..+|...|..+++.+|+.+|+.+|+
T Consensus 192 ~~il~~~~~-~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 192 EQILRIHAR-GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHc-CCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 345554432 33455444 3444443322 233444566667778888899999999886
No 138
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=28.07 E-value=2.6e+02 Score=23.16 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=14.5
Q ss_pred CccChhhHHHHHHHcCCC
Q 030547 85 KTINGDDLLWAMATLGFE 102 (175)
Q Consensus 85 KTI~~eDVl~AL~~LgF~ 102 (175)
..|+.+|+..||++.-=.
T Consensus 317 ~~v~~~df~~Al~~~~ps 334 (355)
T 2qp9_X 317 PDLTIKDFLKAIKSTRPT 334 (355)
T ss_dssp CCBCHHHHHHHHHHSCCS
T ss_pred CCccHHHHHHHHHHcCCC
Confidence 469999999999986543
No 139
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=27.75 E-value=47 Score=30.51 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHH
Q 030547 52 IAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (175)
Q Consensus 52 ISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (175)
+++.++.+|.. |.+.|.+.+...|+++|+|.||=
T Consensus 2 ~t~~a~~~l~~------------A~~~A~~~~h~~i~~eHLLlaLl 35 (758)
T 1r6b_X 2 LNQELELSLNM------------AFARAREHRHEFMTVEHLLLALL 35 (758)
T ss_dssp BCHHHHHHHHH------------HHHHHHHTTBSEECHHHHHHHHT
T ss_pred CCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHH
Confidence 45666666664 78899999999999999999984
No 140
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=27.66 E-value=1.3e+02 Score=21.82 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCccChhhHHHHHHHcCCCcchHHHHHHH
Q 030547 74 EASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 112 (175)
Q Consensus 74 eA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L 112 (175)
+|....-.++.-+|+.+++..+|..+|..-=...+...+
T Consensus 89 ~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l~ 127 (159)
T 3i5g_C 89 EAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIF 127 (159)
T ss_dssp HHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHH
T ss_pred HHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 456666677778999999999999999753334444433
No 141
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=27.57 E-value=77 Score=24.67 Aligned_cols=52 Identities=10% Similarity=0.050 Sum_probs=31.2
Q ss_pred CcccHHHHHHHHHHHHH------------HHHHHHHH----HHHHHHhcCCC-ccChhhHHHHHHHcCC
Q 030547 50 GKIAKDAKDTVQECVSE------------FISFITSE----ASDKCQKEKRK-TINGDDLLWAMATLGF 101 (175)
Q Consensus 50 ~kISkDA~~al~~~ase------------FI~~Ltse----A~~~~~~~kRK-TI~~eDVl~AL~~LgF 101 (175)
..|+.++.+.|.+.+.. ....|... +.+.+..++++ +|+.+||..|++++..
T Consensus 233 ~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~ 301 (310)
T 1ofh_A 233 IAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVE 301 (310)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSSS
T ss_pred eccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhhh
Confidence 46899999998887632 22222221 11222233332 5999999999986643
No 142
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=27.48 E-value=1.3e+02 Score=20.81 Aligned_cols=37 Identities=16% Similarity=-0.004 Sum_probs=24.9
Q ss_pred HHHHHHhcCCCccChhhHHHHHHHcCCCcchHHHHHH
Q 030547 75 ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAY 111 (175)
Q Consensus 75 A~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~ 111 (175)
+....-.++.-.|+.+++..+|..+|..--...+...
T Consensus 100 ~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~ 136 (166)
T 2mys_B 100 AFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNM 136 (166)
T ss_pred HHHHhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4455556777789999999999998864333334333
No 143
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=27.15 E-value=1.7e+02 Score=20.88 Aligned_cols=54 Identities=24% Similarity=0.257 Sum_probs=35.8
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCCCcchHHHHHHH
Q 030547 47 PANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 112 (175)
Q Consensus 47 P~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L 112 (175)
|...++|++-..-|.+ |....-.++--+|+.+++..+|+.||+.--...+...+
T Consensus 5 ~~~~~Lt~~qi~elk~------------~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~ 58 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKE------------AFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAML 58 (153)
T ss_dssp --CTTCCHHHHHHHHH------------HHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred ccccCCCHHHHHHHHH------------HHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHH
Confidence 4456788766665554 33444556667899999999999999876555555443
No 144
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=27.11 E-value=1.1e+02 Score=19.39 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=11.7
Q ss_pred hcCCCccChhhHHHHHHHcCC
Q 030547 81 KEKRKTINGDDLLWAMATLGF 101 (175)
Q Consensus 81 ~~kRKTI~~eDVl~AL~~LgF 101 (175)
.++.-.|+.+++..+|..+|+
T Consensus 20 ~d~~G~i~~~el~~~l~~~g~ 40 (92)
T 2kn2_A 20 KDQNGYISASELRHVMINLGE 40 (92)
T ss_dssp TTCSSEECHHHHHHHHHHTTC
T ss_pred CCCCCeEcHHHHHHHHHHhCC
Confidence 344445666666666666554
No 145
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=26.87 E-value=1.2e+02 Score=18.81 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=30.1
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 030547 38 ISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASD 77 (175)
Q Consensus 38 V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~ 77 (175)
|..+|-.-. +...-..|...+|-+.+.+||.-++.+|.+
T Consensus 6 i~~mMy~fG-D~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 6 LRCMMYGFG-DDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHTT-SCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555443 345678899999999999999999988864
No 146
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=26.67 E-value=1.3e+02 Score=24.87 Aligned_cols=62 Identities=13% Similarity=0.109 Sum_probs=37.5
Q ss_pred HHHHHhhCCC-CCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHh------------cCCCccChhhHHHHHHHcC
Q 030547 39 SRIMKKALPA-NGKIAKDAKDTVQECVS----EFISFITSEASDKCQK------------EKRKTINGDDLLWAMATLG 100 (175)
Q Consensus 39 ~RImK~~LP~-~~kISkDA~~al~~~as----eFI~~LtseA~~~~~~------------~kRKTI~~eDVl~AL~~Lg 100 (175)
..|++..+.. +..++.++...|.+.+. .-|..|..+|...+.+ ...+.|+.+|+..||++..
T Consensus 257 ~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 335 (357)
T 3d8b_A 257 KQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVR 335 (357)
T ss_dssp HHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHG
T ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcC
Confidence 3444443321 34577877777776543 2455565666555544 2346899999999998764
No 147
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=26.64 E-value=76 Score=19.81 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=26.6
Q ss_pred HHHHhcCCCccChhhHHHHHHHcCCCcchHHHHHHHHH
Q 030547 77 DKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 114 (175)
Q Consensus 77 ~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~~ 114 (175)
...-.++.-.|+.+++..+|..+|+.-=...++..+..
T Consensus 30 ~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~ 67 (87)
T 1s6j_A 30 KMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDA 67 (87)
T ss_dssp HHHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 34456677789999999999999876444455444443
No 148
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=26.59 E-value=1.4e+02 Score=22.51 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=42.1
Q ss_pred CcccHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhc-CCCccChhhHHHHHHHcCC--CcchHHHHHHHHH
Q 030547 50 GKIAKDAKDTVQEC-------VSEFISFITSEASDKCQKE-KRKTINGDDLLWAMATLGF--EDYIDPLKAYLMR 114 (175)
Q Consensus 50 ~kISkDA~~al~~~-------aseFI~~LtseA~~~~~~~-kRKTI~~eDVl~AL~~LgF--~~yv~~Lk~~L~~ 114 (175)
..++.|-+.-|.+- +.+-|-.|-..|++..++. +-+.|+-||+-.+-+++.= +.|+..+...|..
T Consensus 31 ~plTEERRKeLVK~akk~aEeaKVAIRNIRRDAnd~lKKl~KdkeISEDe~kr~e~eIQKLTDkyIkkID~ll~~ 105 (121)
T 3lf9_A 31 GGGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLTDVAVKKIDEVLAA 105 (121)
T ss_dssp SBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555444433 3334666677788766654 4567999999888876654 5788877777664
No 149
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=26.39 E-value=2.2e+02 Score=25.34 Aligned_cols=42 Identities=19% Similarity=0.157 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCCccChhhHHHHHHHcCCCcchHHHHHHHHHH
Q 030547 74 EASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (175)
Q Consensus 74 eA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (175)
.+....-.++.-+|+.+++..+|+.+|+.-=.+.++..+..|
T Consensus 389 ~aFk~fD~D~dG~Is~eELr~~L~~lG~~ls~eei~~Lf~~~ 430 (450)
T 3sg6_A 389 EAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 430 (450)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 355666677788999999999999999765445555555444
No 150
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=26.20 E-value=61 Score=26.39 Aligned_cols=65 Identities=9% Similarity=-0.010 Sum_probs=35.3
Q ss_pred cCchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHH
Q 030547 32 YLPIANISRIMKKALP-ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAM 96 (175)
Q Consensus 32 ~LP~A~V~RImK~~LP-~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL 96 (175)
.++...+.+.+++.+. .+..|+.||...|.+.+.-=+..+..+-...+.-.+.++|+.+||...+
T Consensus 141 ~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~ 206 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAV 206 (343)
T ss_dssp CCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 3555556655555543 3568999999988876543222222222222222233467777765443
No 151
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=26.06 E-value=1.4e+02 Score=27.12 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=35.6
Q ss_pred cccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030547 30 DRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQ 80 (175)
Q Consensus 30 d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~ 80 (175)
++++|...|---|... +++|..+....+.+....-+.-|..++.+.+.
T Consensus 205 ~iE~Pl~~vLa~ME~~---Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~~g 252 (605)
T 2kfn_A 205 NIEMPLVPVLSRIERN---GVKIDPKVLHNHSEELTLRLAELEKKAHEIAG 252 (605)
T ss_dssp HTHHHHHHHHHHHHHH---CBCBCHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHhHHHHHHHHHHHc---CeEeCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445655555555444 57899999999999888888888888887763
No 152
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.92 E-value=31 Score=24.38 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=12.1
Q ss_pred cChhhHHHHHHHcCCCc
Q 030547 87 INGDDLLWAMATLGFED 103 (175)
Q Consensus 87 I~~eDVl~AL~~LgF~~ 103 (175)
=+.+||..-|+.+||++
T Consensus 30 Ws~~~V~~WL~~lgl~~ 46 (103)
T 2e8o_A 30 WGPEQVCSFLRRGGFEE 46 (103)
T ss_dssp CHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHcCCCh
Confidence 45577777777777776
No 153
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=25.71 E-value=81 Score=23.25 Aligned_cols=37 Identities=14% Similarity=0.005 Sum_probs=30.0
Q ss_pred HHHhcCCCccChhhHHHHHHHcCCCcchHHHHHHHHHH
Q 030547 78 KCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (175)
Q Consensus 78 ~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (175)
...++++ .-+.+.++.||..++..+.++.|+..|++-
T Consensus 56 W~~r~G~-~ATv~~L~~AL~~i~~~diAe~Ie~~l~~~ 92 (122)
T 3ezq_B 56 WKNTEKE-NATVAHLVGALRSCQMNLVADLVQEVQQAR 92 (122)
T ss_dssp HHHHCTT-TCCHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhCC-CchHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4445554 357899999999999999999999988764
No 154
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=25.56 E-value=93 Score=25.23 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=14.3
Q ss_pred CccChhhHHHHHHHcCC
Q 030547 85 KTINGDDLLWAMATLGF 101 (175)
Q Consensus 85 KTI~~eDVl~AL~~LgF 101 (175)
..|+.+|+..||+...=
T Consensus 284 ~~it~~df~~al~~~~p 300 (322)
T 3eie_A 284 PDLTIKDFLKAIKSTRP 300 (322)
T ss_dssp CCCCHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHhcCC
Confidence 45999999999997764
No 155
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=25.49 E-value=50 Score=26.09 Aligned_cols=58 Identities=19% Similarity=0.156 Sum_probs=33.9
Q ss_pred HHHHHHhhCCCCCcccHHH-HHHHHHHHHH----HHHHHHHHHHHHHHhcCCCccChhhHHHHH
Q 030547 38 ISRIMKKALPANGKIAKDA-KDTVQECVSE----FISFITSEASDKCQKEKRKTINGDDLLWAM 96 (175)
Q Consensus 38 V~RImK~~LP~~~kISkDA-~~al~~~ase----FI~~LtseA~~~~~~~kRKTI~~eDVl~AL 96 (175)
..+|++..+. +..++.|+ ...|.+.+.- -|.-+...|...|..+++.+|+.+||.+|+
T Consensus 215 r~~il~~~~~-~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 215 REQILRIHAR-GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHc-cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 3445554442 33455544 3344433322 233444566667778888899999999886
No 156
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=25.27 E-value=1.2e+02 Score=20.70 Aligned_cols=35 Identities=26% Similarity=0.224 Sum_probs=23.5
Q ss_pred HHhcCCCccChhhHHHHHHHcCCCcchHHHHHHHH
Q 030547 79 CQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 113 (175)
Q Consensus 79 ~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~ 113 (175)
.-.++.-+|+.+++..+|..+|+.--...+...+.
T Consensus 25 ~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 59 (153)
T 2ovk_B 25 IDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLK 59 (153)
T ss_dssp HCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHH
T ss_pred hCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34455667888888888888887654455555443
No 157
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=25.25 E-value=1.3e+02 Score=21.27 Aligned_cols=29 Identities=17% Similarity=0.105 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCCccChhhHHHHHHHcCCC
Q 030547 74 EASDKCQKEKRKTINGDDLLWAMATLGFE 102 (175)
Q Consensus 74 eA~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (175)
.+....-.++.-.|+.+++..+|..+|..
T Consensus 113 ~~F~~~D~d~~G~Is~~El~~~l~~~g~~ 141 (191)
T 1uhk_A 113 ALFDIVDKDQNGAITLDEWKAYTKAAGII 141 (191)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHHTSC
T ss_pred HHHHHhcCCCCCcCcHHHHHHHHHHhCCC
Confidence 56666667777889999999999998864
No 158
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=24.89 E-value=33 Score=31.30 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=33.1
Q ss_pred cccHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhcCCCccChhhHHHHHHH
Q 030547 51 KIAKDAKDTVQECVSE------------------FISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (175)
Q Consensus 51 kISkDA~~al~~~ase------------------FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (175)
.+++++.+.|.+.... -+..|...|...|.-.+|.+|+.+||..|++-
T Consensus 521 ~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l 586 (595)
T 3f9v_A 521 KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINI 586 (595)
T ss_dssp CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 5667777777665322 12334455677788889999999999999853
No 159
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=24.80 E-value=2.4e+02 Score=25.95 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=13.1
Q ss_pred HHHHHHHhcCCCccChhhHHHHHH
Q 030547 74 EASDKCQKEKRKTINGDDLLWAMA 97 (175)
Q Consensus 74 eA~~~~~~~kRKTI~~eDVl~AL~ 97 (175)
.|...|.-.+|..|+++||..|++
T Consensus 458 lA~A~A~L~gR~~V~~eDV~~Ai~ 481 (506)
T 3f8t_A 458 LAKAHARMRLSDDVEPEDVDIAAE 481 (506)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHcCcCCCCHHHHHHHHH
Confidence 344445555556666666655553
No 160
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=24.65 E-value=86 Score=19.63 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=19.3
Q ss_pred HHHhcCCCccChhhHHHHHHHcCCC
Q 030547 78 KCQKEKRKTINGDDLLWAMATLGFE 102 (175)
Q Consensus 78 ~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (175)
..-.++.-+|+.+++..+|..+|+.
T Consensus 22 ~~D~d~~G~I~~~el~~~l~~~g~~ 46 (86)
T 1j7q_A 22 IFDRNAENIAPVSDTMDMLTKLGQT 46 (86)
T ss_dssp HHSTTTTSCBCHHHHHHHHHHTSCC
T ss_pred HhCCCCCCcCcHHHHHHHHHHHcCC
Confidence 3345666689999999999999875
No 161
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=24.35 E-value=76 Score=24.75 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=37.7
Q ss_pred CchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHH
Q 030547 33 LPIANISRIMKKALP-ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (175)
Q Consensus 33 LP~A~V~RImK~~LP-~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (175)
++...+.++++..+. .+..|+.++...|.+.+.--+..+-......+.. ...|+.+||..++..
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~~~ 225 (319)
T 2chq_A 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITAT 225 (319)
T ss_dssp CCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHCC
Confidence 455666666665543 3567999998888876543333332222222222 346898888877653
No 162
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=24.14 E-value=2.1e+02 Score=20.75 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCCccChhhHHHHHHHcCCC
Q 030547 74 EASDKCQKEKRKTINGDDLLWAMATLGFE 102 (175)
Q Consensus 74 eA~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (175)
.+....-.++.-+|+.+++..+|..+|+.
T Consensus 97 ~~F~~~D~d~~G~i~~~e~~~~l~~~g~~ 125 (191)
T 1y1x_A 97 EGFRKRDSSGDGRLDSNEVRAALLSSGYQ 125 (191)
T ss_dssp HHHHHHCTTSSSCBCHHHHHHHHHTTSCC
T ss_pred HHHHHhCCCCCCeEcHHHHHHHHHHhCCC
Confidence 45555666777789999999999988864
No 163
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=23.94 E-value=1.1e+02 Score=21.72 Aligned_cols=29 Identities=21% Similarity=0.073 Sum_probs=20.5
Q ss_pred HHHHHHHhcCCCccChhhHHHHHHHcCCC
Q 030547 74 EASDKCQKEKRKTINGDDLLWAMATLGFE 102 (175)
Q Consensus 74 eA~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (175)
.+....-.++.-.|+.+++..+|..+|..
T Consensus 117 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~ 145 (195)
T 1qv0_A 117 AVFDIFDKDGSGTITLDEWKAYGKISGIS 145 (195)
T ss_dssp HHHHHTC----CEECHHHHHHHHHHHSSC
T ss_pred HHHHHhcCCCCCcCcHHHHHHHHHHhCCC
Confidence 55666667777899999999999998864
No 164
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=23.54 E-value=40 Score=20.32 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=15.6
Q ss_pred CccChhhHHHHHHHcCCC
Q 030547 85 KTINGDDLLWAMATLGFE 102 (175)
Q Consensus 85 KTI~~eDVl~AL~~LgF~ 102 (175)
..++.++|+.+++++||.
T Consensus 48 ~~~~~~~i~~~i~~~Gy~ 65 (69)
T 4a4j_A 48 GETTPQILTDAVERAGYH 65 (69)
T ss_dssp TTCCHHHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHcCCc
Confidence 467889999999999985
No 165
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=23.08 E-value=1.1e+02 Score=19.82 Aligned_cols=27 Identities=7% Similarity=0.209 Sum_probs=20.4
Q ss_pred HHHHHhcCCCccChhhHHHHHHHcCCC
Q 030547 76 SDKCQKEKRKTINGDDLLWAMATLGFE 102 (175)
Q Consensus 76 ~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (175)
....-.++.-+|+.+++..+|..+|+.
T Consensus 33 F~~~D~d~~G~I~~~El~~~l~~~g~~ 59 (91)
T 2pmy_A 33 FAACDANRSGRLEREEFRALCTELRVR 59 (91)
T ss_dssp HHHHCTTCSSSEEHHHHHHHHHHTTCC
T ss_pred HHHHCCCCCCCCcHHHHHHHHHHcCcC
Confidence 344556667789999999999998853
No 166
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=23.07 E-value=1.4e+02 Score=21.20 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=26.6
Q ss_pred hcCCCccChhhHHHHHHHcCCCcchHHHHHHHHH
Q 030547 81 KEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 114 (175)
Q Consensus 81 ~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~~ 114 (175)
+.--|||.+.||-.||..-+|-.+.++++...-.
T Consensus 19 R~~~kTicPSEvARal~~~~Wr~lM~~vR~~A~~ 52 (85)
T 2ns0_A 19 RADSASICPSDVARAVAPDDWRPLMEPVREAAGR 52 (85)
T ss_dssp SCTTCCBCHHHHHHHHCTTSCGGGHHHHHHHHHH
T ss_pred hCCCCCcCHHHHHHHhCchhHHHHhHHHHHHHHH
Confidence 3445999999999999877788888888775443
No 167
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=23.07 E-value=1.2e+02 Score=20.82 Aligned_cols=15 Identities=33% Similarity=0.264 Sum_probs=7.2
Q ss_pred CCCccChhhHHHHHH
Q 030547 83 KRKTINGDDLLWAMA 97 (175)
Q Consensus 83 kRKTI~~eDVl~AL~ 97 (175)
+.-+|+.++.+..+.
T Consensus 59 ~~g~i~~~eF~~~~~ 73 (148)
T 1exr_A 59 GNGTIDFPEFLSLMA 73 (148)
T ss_dssp CSSSEEHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHH
Confidence 334455555554443
No 168
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=22.93 E-value=2.2e+02 Score=20.71 Aligned_cols=27 Identities=15% Similarity=-0.087 Sum_probs=19.3
Q ss_pred HHHHHHhcCCCccChhhHHHHHHHcCCC
Q 030547 75 ASDKCQKEKRKTINGDDLLWAMATLGFE 102 (175)
Q Consensus 75 A~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (175)
+....-.++.-+|+.+++..+| .+|..
T Consensus 131 ~F~~~D~d~~G~Is~~El~~~l-~~g~~ 157 (196)
T 3dtp_E 131 AFNLFDEGDGKCKEETLKRSLT-TWGEK 157 (196)
T ss_dssp HHHTTCSSSSCCBHHHHHHHHH-HSSSC
T ss_pred HHHHHCCCCCCcCcHHHHHHHH-HcCCC
Confidence 3344445666788999999999 88854
No 169
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=22.55 E-value=1.7e+02 Score=20.20 Aligned_cols=54 Identities=9% Similarity=0.095 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcCC--------------C-cchHHHHHHHHHHHHHh
Q 030547 66 EFISFITSEASDKCQKEKRKTINGDDLLWAMATLGF--------------E-DYIDPLKAYLMRYREME 119 (175)
Q Consensus 66 eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF--------------~-~yv~~Lk~~L~~yre~~ 119 (175)
.|+.+|.-.+.+.-.++.++..+..--+.+|+.+-+ + -....|.+.|..|.+..
T Consensus 17 lf~~wL~e~~~~a~~r~~k~~~~Y~KA~~sLk~~P~~i~s~~e~~~L~giG~ki~~~L~e~L~~~c~en 85 (87)
T 2kp7_A 17 LFVRWLTEWRDEAASRGRHTRFVFQKALRSLQRYPLPLRSGKEAKILQHFGDRLCRMLDEKLKQHLASG 85 (87)
T ss_dssp HHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHCCSCCCSHHHHHTCTTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhCCCCCCCHHHHHHhhcccHHHHHHHHHHHHHHHHHc
Confidence 345555544444444455556666666666665444 2 35567788888887643
No 170
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=22.22 E-value=1.2e+02 Score=18.86 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=15.1
Q ss_pred HHHhcCCCccChhhHHHHHHHcC
Q 030547 78 KCQKEKRKTINGDDLLWAMATLG 100 (175)
Q Consensus 78 ~~~~~kRKTI~~eDVl~AL~~Lg 100 (175)
..-.++.-.|+.+++..+|..+|
T Consensus 19 ~~D~d~~G~i~~~el~~~l~~~g 41 (86)
T 2opo_A 19 RFDTNGDGKISSSELGDALKTLG 41 (86)
T ss_dssp HHCTTCSSEEEHHHHHHHHHTTT
T ss_pred HHCCCCCCCcCHHHHHHHHHHcC
Confidence 33455556677777777777776
No 171
>1ng6_A Hypothetical protein YQEY; structural genomics, domain GATB/YQEY, PFAM02637, DUF186, PSI, protein structure initiative; 1.40A {Bacillus subtilis} SCOP: a.182.1.1
Probab=21.89 E-value=2.5e+02 Score=20.96 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=15.0
Q ss_pred CccChhhHHHHHHHcCCCcchHHHHHHHHHHH
Q 030547 85 KTINGDDLLWAMATLGFEDYIDPLKAYLMRYR 116 (175)
Q Consensus 85 KTI~~eDVl~AL~~LgF~~yv~~Lk~~L~~yr 116 (175)
..|++++|...+..+. ..-++.++.|.
T Consensus 43 ~~lt~~~l~~li~~~~-----K~~ke~~~~~~ 69 (148)
T 1ng6_A 43 DSLTEDEELTVLSREL-----KQRKDSLQEFS 69 (148)
T ss_dssp SCCCHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 5667777666665443 44444444444
No 172
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=21.80 E-value=1.8e+02 Score=25.19 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=39.3
Q ss_pred chhHHHHHHHhhCCC------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHcC
Q 030547 34 PIANISRIMKKALPA------NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (175)
Q Consensus 34 P~A~V~RImK~~LP~------~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (175)
-...|.+.+.+.+.. ...+|..++.+|.. |...|..-+...|..+|||.||-+-+
T Consensus 56 d~~~l~~~l~~~l~~~~~~~~~~~~S~~~~~vL~~------------A~~~A~~~g~~~I~teHLLlaLl~~~ 116 (468)
T 3pxg_A 56 GSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIREG 116 (468)
T ss_dssp CHHHHHHHHHTTSCCCCTTCSSCEECHHHHHHHHH------------HHHHHHTTTCSSBCHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHhcc
Confidence 344555555555532 24578888888775 67778888999999999999986543
No 173
>3nzz_A Cell invasion protein SIPD; needle TIP protein, PRGI, SIPB, SIPC; 1.65A {Salmonella enterica} PDB: 3o02_A* 3o00_A 3o01_A* 2ym0_A
Probab=21.68 E-value=43 Score=29.12 Aligned_cols=67 Identities=12% Similarity=0.186 Sum_probs=30.9
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHH
Q 030547 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (175)
Q Consensus 29 ~d~~LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (175)
+++.|-+-.+.--+|..-..++.+|.|-+++|+.+-+.=-.++.+.|-. ...|.||+..|+...++.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~is~aElw~~I~~ 105 (308)
T 3nzz_A 39 DERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSASPM---AQPRTTISDAEIWDMVSQ 105 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCC------------------------HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHhhCCCchhhcccCcc---cCCCCcccHHHHHHHHHH
Confidence 3455665554444444444466799999999998766555566555443 377999999998877764
No 174
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=21.45 E-value=45 Score=29.83 Aligned_cols=35 Identities=14% Similarity=0.380 Sum_probs=27.1
Q ss_pred HhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 030547 43 KKALPANGKIAKDAKDTVQECVSEFISFITSEASD 77 (175)
Q Consensus 43 K~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~ 77 (175)
|+++.+.--|-+|.+.||++||...=.||......
T Consensus 428 k~~i~~~~ei~~ei~~a~~~~~r~l~~~~~~~~~~ 462 (471)
T 1mu5_A 428 KESIAEVEDIEKEIKNALMEVARKLKQYLSEKRKE 462 (471)
T ss_dssp CCCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444788999999999999999999875443
No 175
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=21.36 E-value=45 Score=21.65 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=14.9
Q ss_pred ccChhhHHHHHHHcCCC
Q 030547 86 TINGDDLLWAMATLGFE 102 (175)
Q Consensus 86 TI~~eDVl~AL~~LgF~ 102 (175)
.++..||+++|+.+||.
T Consensus 4 p~~~~elik~L~~~G~~ 20 (70)
T 1whz_A 4 PPRPEEVARKLRRLGFV 20 (70)
T ss_dssp CCCHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHCCCE
Confidence 36789999999999996
No 176
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=21.31 E-value=1.7e+02 Score=20.20 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=11.3
Q ss_pred cCCCccChhhHHHHHHHcCC
Q 030547 82 EKRKTINGDDLLWAMATLGF 101 (175)
Q Consensus 82 ~kRKTI~~eDVl~AL~~LgF 101 (175)
++--+|+.+++..+|..+|+
T Consensus 37 d~~G~i~~~el~~~l~~~g~ 56 (166)
T 2mys_B 37 NADGIIDKDDLRETFAAMGR 56 (166)
T ss_pred CCCCcCCHHHHHHHHHHhCC
Confidence 34445666666666665555
No 177
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=21.04 E-value=1.4e+02 Score=20.44 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=24.4
Q ss_pred HHHHHHhcCCCccChhhHHHHHHHcCCCcchHHHHHH
Q 030547 75 ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAY 111 (175)
Q Consensus 75 A~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~ 111 (175)
+....-.++.-+|+.+++..+|..+|..-=...+...
T Consensus 92 ~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~ 128 (156)
T 1wdc_B 92 AFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMT 128 (156)
T ss_dssp HHHTTCTTCCSCEEHHHHHHHHHHSSSCCCHHHHHHH
T ss_pred HHHHHCcCCCCccCHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3444455667789999999999998864323334333
No 178
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=20.98 E-value=1.8e+02 Score=18.81 Aligned_cols=80 Identities=15% Similarity=0.057 Sum_probs=45.9
Q ss_pred CchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHHc---CCCcchHHHH
Q 030547 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPLK 109 (175)
Q Consensus 33 LP~A~V~RImK~~LP~~~kISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L---gF~~yv~~Lk 109 (175)
+....|.+|++..= .+..|+-+--..+......-... ...+....-.++.-+|+.+++..+|..+ |..--...++
T Consensus 6 ~~~~e~~~l~~~~d-~~g~i~~~eF~~~~~~~~~~~~~-l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~ 83 (108)
T 2pvb_A 6 LKDADVAAALAACS-AADSFKHKEFFAKVGLASKSLDD-VKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETK 83 (108)
T ss_dssp SCHHHHHHHHHHTC-STTCCCHHHHHHHHTGGGSCHHH-HHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHH
T ss_pred CCHHHHHHHHHHhC-CCCcCcHHHHHHHHhCChhHHHH-HHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHH
Confidence 55677888888754 45567754322221100000111 1245566667778899999999999999 5543334444
Q ss_pred HHHHH
Q 030547 110 AYLMR 114 (175)
Q Consensus 110 ~~L~~ 114 (175)
..+..
T Consensus 84 ~~~~~ 88 (108)
T 2pvb_A 84 AFLAD 88 (108)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 179
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=20.84 E-value=1.1e+02 Score=22.49 Aligned_cols=28 Identities=11% Similarity=0.105 Sum_probs=22.1
Q ss_pred HHHHHHhcCCCccChhhHHHHHHHcCCC
Q 030547 75 ASDKCQKEKRKTINGDDLLWAMATLGFE 102 (175)
Q Consensus 75 A~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (175)
+....-.++.-+|+.+++..+|+.+|+.
T Consensus 57 ~F~~~D~d~~G~i~~~El~~~l~~~g~~ 84 (191)
T 3k21_A 57 TFLVLDEDGKGYITKEQLKKGLEKDGLK 84 (191)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred HHHHHCCCCCCCCcHHHHHHHHHHcCCC
Confidence 4445556677799999999999999875
No 180
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=20.65 E-value=2.1e+02 Score=19.58 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=14.8
Q ss_pred HhcCCCccChhhHHHHHHHcCCC
Q 030547 80 QKEKRKTINGDDLLWAMATLGFE 102 (175)
Q Consensus 80 ~~~kRKTI~~eDVl~AL~~LgF~ 102 (175)
-.++.-+|+.+++..+|..+|+.
T Consensus 37 D~~~~G~i~~~e~~~~l~~~~~~ 59 (166)
T 2aao_A 37 DADKSGQITFEELKAGLKRVGAN 59 (166)
T ss_dssp CTTCCSSBCHHHHHHHGGGGTCC
T ss_pred CCCCCCeEeHHHHHHHHHHhCCC
Confidence 34455567777777777776654
No 181
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=20.58 E-value=41 Score=23.21 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=18.1
Q ss_pred ccChhhHHHHHHHcCC--CcchHHH
Q 030547 86 TINGDDLLWAMATLGF--EDYIDPL 108 (175)
Q Consensus 86 TI~~eDVl~AL~~LgF--~~yv~~L 108 (175)
.=+++||..-|+.+|| ++|++..
T Consensus 19 ~Wt~~dV~~WL~~~gl~~~~Y~~~F 43 (91)
T 1v85_A 19 KWTTEEVVLWLEQLGPWASLYRDRF 43 (91)
T ss_dssp GCCHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4578999999999999 6665443
No 182
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=20.39 E-value=1.2e+02 Score=26.15 Aligned_cols=70 Identities=9% Similarity=0.117 Sum_probs=48.8
Q ss_pred hCCCCCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-ChhhHHHHHHHcCCCcchHHHHHHHHHHH
Q 030547 45 ALPANGK---IAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTI-NGDDLLWAMATLGFEDYIDPLKAYLMRYR 116 (175)
Q Consensus 45 ~LP~~~k---ISkDA~~al~~~aseFI~~LtseA~~~~~~~kRKTI-~~eDVl~AL~~LgF~~yv~~Lk~~L~~yr 116 (175)
.+|.... ++.|-.+.+...-+..-.|+.......-... + .. .-+..++-|+.+|+++|++.....+++|+
T Consensus 461 ~~p~~~~~~~~t~~e~~~~~~~~~~i~~~~~~~~~~~i~g~-~-~~~~wd~y~~~l~~~g~~~~~~~~q~~yd~~~ 534 (535)
T 3omb_A 461 YIPDYVNMDNMDPSDATKLNTNNAEIFNTTMQKTATWMSKG-G-IDEEWDAYCKQLDSIGLQESTKIWQKWYDTYT 534 (535)
T ss_dssp SCCTTCSGGGSCHHHHHHHHHHHHHHTTTHHHHHHHHHHHC-C-HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred cCCchhccCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-C-cHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhh
Confidence 3564442 7777777777666666666655444444443 2 22 25678889999999999999999999986
No 183
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=20.31 E-value=1.9e+02 Score=19.50 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=20.5
Q ss_pred hcC-CCccChhhHHHHHHHcCCCcchHHHHHH
Q 030547 81 KEK-RKTINGDDLLWAMATLGFEDYIDPLKAY 111 (175)
Q Consensus 81 ~~k-RKTI~~eDVl~AL~~LgF~~yv~~Lk~~ 111 (175)
.++ .-+|+.+++..+|..+|+.--...++..
T Consensus 25 ~d~~~G~i~~~el~~~l~~~g~~~~~~~~~~l 56 (146)
T 2qac_A 25 EKSSGGKISIDNASYNARKLGLAPSSIDEKKI 56 (146)
T ss_dssp HHCBTTBEEHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred ccCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Confidence 344 5578888888888888875443444443
No 184
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=20.31 E-value=51 Score=20.22 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=14.9
Q ss_pred ccChhhHHHHHHHcCCC
Q 030547 86 TINGDDLLWAMATLGFE 102 (175)
Q Consensus 86 TI~~eDVl~AL~~LgF~ 102 (175)
+++.++|+.+++++||.
T Consensus 45 ~~~~~~i~~~i~~~Gy~ 61 (68)
T 3iwl_A 45 EHSMDTLLATLKKTGKT 61 (68)
T ss_dssp SSCHHHHHHHHHTTCSC
T ss_pred cCCHHHHHHHHHHcCCc
Confidence 46889999999999996
Done!