BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030548
(175 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q17QQ4|TAF9_BOVIN Transcription initiation factor TFIID subunit 9 OS=Bos taurus
GN=TAF9 PE=2 SV=1
Length = 264
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/133 (47%), Positives = 94/133 (70%), Gaps = 1/133 (0%)
Query: 6 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCD 65
+ +P+DA+++ +LK MG+ +YEPRVI+Q LE +RYV +L DA++YS HA K T+D D
Sbjct: 10 KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69
Query: 66 DVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 125
DV+LA+Q + + SF+ PP R+ LL++A+ RN+ PLP G LPP++ L +PNY+L
Sbjct: 70 DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129
Query: 126 -SIEKKESAQAAE 137
S++KK SA A
Sbjct: 130 KSLQKKASASAGR 142
>sp|Q16594|TAF9_HUMAN Transcription initiation factor TFIID subunit 9 OS=Homo sapiens
GN=TAF9 PE=1 SV=1
Length = 264
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 93/133 (69%), Gaps = 1/133 (0%)
Query: 6 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCD 65
+ +P+DA+++ +LK MG+ +YEPRVI+Q LE +RYV +L DA++YS HA K T+D D
Sbjct: 10 KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69
Query: 66 DVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 125
DV+LA+Q + + SF+ PP R+ LL++A+ RN+ PLP G LPP++ L +PNY+L
Sbjct: 70 DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129
Query: 126 -SIEKKESAQAAE 137
S++KK S A
Sbjct: 130 KSLQKKASTSAGR 142
>sp|Q8VI33|TAF9_MOUSE Transcription initiation factor TFIID subunit 9 OS=Mus musculus
GN=Taf9 PE=2 SV=1
Length = 264
Score = 136 bits (342), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 93/133 (69%), Gaps = 1/133 (0%)
Query: 6 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCD 65
+ +P+DA+++ +LK MG+ +YEPRVI+Q LE +RYV +L DA++YS HA K T+D D
Sbjct: 10 KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69
Query: 66 DVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 125
DV+LA+Q + + SF+ PP R+ LL++A+ RN+ PLP G LPP++ L +PNY+L
Sbjct: 70 DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129
Query: 126 -SIEKKESAQAAE 137
S++KK A A
Sbjct: 130 KSLQKKAPAPAGR 142
>sp|Q5BKE0|TAF9_RAT Transcription initiation factor TFIID subunit 9 OS=Rattus
norvegicus GN=Taf9 PE=2 SV=1
Length = 264
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 101/162 (62%)
Query: 6 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCD 65
+ +P+DA+++ +LK MG+ +YEPRVI+Q LE +RYV +L DA++YS HA K T+D D
Sbjct: 10 KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDAD 69
Query: 66 DVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 125
DV+LA+Q + + SF+ PP R+ LL++A+ RN+ PLP G LPP++ L +PNY+L
Sbjct: 70 DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129
Query: 126 SIEKKESAQAAEEMEEDEQSTEPNASEEQRTDMLQQTPQKVS 167
+K++ A + S +S + TPQ +S
Sbjct: 130 KSLQKKAPTPAGRITVPRLSVGSVSSRPSTPTLGTPTPQAMS 171
>sp|Q62880|TAF9B_RAT Transcription initiation factor TFIID subunit 9B OS=Rattus
norvegicus GN=Taf9b PE=2 SV=2
Length = 258
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
Query: 6 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCD 65
++ PRDA ++ +LK MG+ DYEPRVI+Q LE +RYV +L DA++YS HA K T+D D
Sbjct: 10 KNAPRDALVMAQILKDMGITDYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDAD 69
Query: 66 DVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 125
DV+LA+Q + + SF+ PP R+ LL++A+ +N+ PLP G LPP++ L +PNY+L
Sbjct: 70 DVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRL 129
Query: 126 -SIEKKESAQA 135
S+ KK Q
Sbjct: 130 KSLVKKGPNQG 140
>sp|Q6NZA9|TAF9B_MOUSE Transcription initiation factor TFIID subunit 9B OS=Mus musculus
GN=Taf9b PE=1 SV=2
Length = 249
Score = 130 bits (327), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
Query: 6 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCD 65
++ PRDA ++ +LK MG+ +YEPRVI+Q LE +RYV +L DA++YS HA K T+D D
Sbjct: 10 KNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDAD 69
Query: 66 DVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 125
DV+LA+Q + + SF+ PP R+ LL++A+ +N+ PLP G LPP++ L +PNY+L
Sbjct: 70 DVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRL 129
Query: 126 -SIEKKESAQA 135
S+ KK Q
Sbjct: 130 KSLVKKGPNQG 140
>sp|Q5R7P7|TAF9B_PONAB Transcription initiation factor TFIID subunit 9B OS=Pongo abelii
GN=TAF9B PE=2 SV=1
Length = 251
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 101/167 (60%), Gaps = 10/167 (5%)
Query: 6 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCD 65
++ PRDA ++ +LK MG+ +YEPRVI+Q LE +RYV +L DA++YS HA K +D D
Sbjct: 10 KNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDAD 69
Query: 66 DVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 125
DV+LA+Q + + SF+ PP R+ LL++A+ +N+ PLP G LPP++ L +PNY+L
Sbjct: 70 DVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRL 129
Query: 126 -SIEKKESAQA--AEEMEEDEQSTEPNASEEQRTDMLQQTPQKVSFP 169
S+ KK Q + S++P T TPQ VS P
Sbjct: 130 KSLIKKGPNQGRLVPRLSVGAVSSKP-------TTPTIATPQTVSVP 169
>sp|Q9HBM6|TAF9B_HUMAN Transcription initiation factor TFIID subunit 9B OS=Homo sapiens
GN=TAF9B PE=1 SV=1
Length = 251
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 101/167 (60%), Gaps = 10/167 (5%)
Query: 6 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCD 65
++ PRDA ++ +LK MG+ +YEPRVI+Q LE +RYV +L DA++YS HA K +D D
Sbjct: 10 KNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDAD 69
Query: 66 DVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 125
DV+LA+Q + + SF+ PP R+ LL++A+ +N+ PLP G LPP++ L +PNY+L
Sbjct: 70 DVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRL 129
Query: 126 -SIEKKESAQA--AEEMEEDEQSTEPNASEEQRTDMLQQTPQKVSFP 169
S+ KK Q + S++P T TPQ VS P
Sbjct: 130 KSLIKKGPNQGRLVPRLSVGAVSSKP-------TTPTIATPQTVSVP 169
>sp|Q27272|TAF9_DROME Transcription initiation factor TFIID subunit 9 OS=Drosophila
melanogaster GN=e(y)1 PE=1 SV=1
Length = 278
Score = 116 bits (291), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 81/118 (68%)
Query: 8 LPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDV 67
+P+DA+++ S+LK + V++YEPRV++Q LE +RYV +L DA+VY+ HA K TID DDV
Sbjct: 18 VPKDAQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTCILDDAKVYANHARKKTIDLDDV 77
Query: 68 KLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 125
+LA + ++ SF+ P R VL ++A RN +PLP G+ LPP++ L NY+L
Sbjct: 78 RLATEVTLDKSFTGPLERHVLAKVADVRNSMPLPPIKPHCGLRLPPDRYCLTGVNYKL 135
>sp|Q8SSI9|TAF9_ENCCU Transcription initiation factor TFIID subunit 9 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=TAF9 PE=1 SV=1
Length = 137
Score = 106 bits (265), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 77/125 (61%)
Query: 1 MAEGDEDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKN 60
MA G+ PRDAK++ +L+S+G+E+ EP+VI Q LE YRY DVL DA ++++H G+
Sbjct: 1 MASGENLAPRDAKVISVILRSLGIEECEPKVIIQLLEFAYRYTTDVLEDALLFAKHTGRT 60
Query: 61 TIDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLIS 120
I DVKLA+Q+KV F PP R+ L E++ N PL I +PP L++
Sbjct: 61 HITTSDVKLALQTKVGRHFVPPPPRQYLSEISTMVNSKPLTIPDGENLIRVPPSSSALLN 120
Query: 121 PNYQL 125
+Y++
Sbjct: 121 LDYEV 125
>sp|Q09869|TAF9_SCHPO Transcription initiation factor TFIID subunit 9
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf9 PE=1 SV=1
Length = 163
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 85/142 (59%), Gaps = 7/142 (4%)
Query: 9 PRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHA-GKNT-IDCDD 66
P+D +++ +L S+GV Y V Q L +RY ++ D+QVY+EH+ G+N I +D
Sbjct: 14 PKDVRLIHLILSSLGVPSYSQTVPLQLLTFAHRYTQQLIQDSQVYAEHSRGQNAPISVED 73
Query: 67 VKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQLS 126
V+LAV S++N SF+ PP +E LLELA RN+ PLP+ G LPPE+ L PN+ +S
Sbjct: 74 VRLAVASQINHSFTGPPPKEFLLELAMERNRKPLPQIQPSYGFRLPPEKYCLTQPNWIVS 133
Query: 127 IEK-----KESAQAAEEMEEDE 143
E KE + MEED+
Sbjct: 134 NETQQNQPKEENSSDSRMEEDK 155
>sp|Q05027|TAF9_YEAST Transcription initiation factor TFIID subunit 9 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF9 PE=1
SV=1
Length = 157
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 6 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNT---- 61
E+ PRD +++ LL S + YE +V Q ++ +RY VL DA VY+++AG
Sbjct: 27 EETPRDVRLLHLLLASQSIHQYEDQVPLQLMDFAHRYTQGVLKDALVYNDYAGSGNSAGS 86
Query: 62 -IDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLIS 120
+ +D++LA+ ++ F +E++L+LA RNK LP+ + G+ LPPE+ L +
Sbjct: 87 GLGVEDIRLAIAARTQYQFKPTAPKELMLQLAAERNKKALPQVMGTWGVRLPPEKYCLTA 146
Query: 121 PNYQL 125
+ L
Sbjct: 147 KEWDL 151
>sp|P61882|HARA_PYRFU Archaeal histone A OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=PF1831 PE=3 SV=1
Length = 67
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 15 VKSLLKSMGVE---DYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAV 71
V L++ G E + +V+ ++LE Y ++V A ++ HAG+ T+ +D+KLA+
Sbjct: 9 VDRLIRKAGAERVSEQAAKVLAEYLE---EYAIEVAKKAVEFARHAGRKTVKVEDIKLAI 65
Query: 72 QS 73
+S
Sbjct: 66 KS 67
>sp|P61881|HARA_PYRAB Archaeal histone A OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=PYRAB03470 PE=3 SV=1
Length = 67
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 15 VKSLLKSMGVE---DYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAV 71
V L++ G E + +V+ ++LE Y ++V A ++ HAG+ T+ +D+KLA+
Sbjct: 9 VDRLIRKAGAERVSEQAAKVLAEYLE---EYAIEVAKKAVEFARHAGRKTVKVEDIKLAI 65
Query: 72 QS 73
+S
Sbjct: 66 KS 67
>sp|Q3E835|YO086_YEAST Uncharacterized protein YOL086W-A OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YOL086W-A PE=1 SV=1
Length = 90
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 27 YEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 74
Y PR I+ LEL Y + ++ +D Q ++ HAG+ ++ D+ L ++ +
Sbjct: 33 YTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQ 80
>sp|O74098|HARA_PYRHO Archaeal histone A OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1782.1
PE=1 SV=2
Length = 67
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 15 VKSLLKSMGVE---DYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAV 71
V L++ G E + +V+ ++LE Y +++ A ++ HAG+ T+ +D+KLA+
Sbjct: 9 VDRLIRKAGAERVSEQAAKVLAEYLE---EYAIEIAKKAVEFARHAGRKTVKVEDIKLAI 65
Query: 72 QS 73
+S
Sbjct: 66 KS 67
>sp|P50485|HARA_PYRSG Archaeal histone A OS=Pyrococcus sp. (strain GB-3a) GN=hpyA1 PE=3
SV=1
Length = 67
Score = 37.0 bits (84), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 15 VKSLLKSMGVE---DYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAV 71
V L++ G E + +++ ++LE Y ++V A ++ HAG+ T+ +D+KLA+
Sbjct: 9 VDRLIRKAGAERVSEEAAKILAEYLE---EYAIEVSKKAVEFARHAGRKTVKAEDIKLAI 65
Query: 72 QS 73
+S
Sbjct: 66 KS 67
>sp|P95669|HANA_THEZI Archaeal histone HAN1 subunit A OS=Thermococcus zilligii GN=han1A
PE=1 SV=3
Length = 67
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 15 VKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73
+ L++ G E E Y ++V A ++ HAG+ T+ +DV+LAV++
Sbjct: 9 IDRLIRKAGAERVSEDAAKALAEYLEEYAIEVGKKATEFARHAGRKTVKAEDVRLAVKA 67
>sp|P11461|FATA_VIBA7 Ferric anguibactin receptor OS=Vibrio anguillarum (strain ATCC
68554 / 775) GN=fatA PE=3 SV=1
Length = 726
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 103 SIA-GRGIPLPPEQDTLISPNYQLSIEKKESAQAAEEMEEDEQSTEPNASEEQRTDMLQQ 161
SIA G +P PP DTL+SP++ + + + E++ T A RTD
Sbjct: 282 SIASGVDVPSPPSSDTLLSPSWAYNDSEDKGMMIRAELDLSNSVTAYGAVGASRTDFDSN 341
Query: 162 TPQKV 166
PQ+V
Sbjct: 342 VPQRV 346
>sp|O28779|HAF2_ARCFU Probable archaeal histone A1-2 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=hpyA1-2 PE=3 SV=1
Length = 67
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 15 VKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAV 71
V L++ G E + + +E+ Y + V A ++H+G+ T+ DD+KLA+
Sbjct: 9 VDRLIRKAGAERVSADAVEKMVEVLEDYAITVAKKAVEIAKHSGRKTVTADDIKLAL 65
>sp|Q6NRI8|CENPS_XENLA Centromere protein S OS=Xenopus laevis GN=apitd1 PE=2 SV=1
Length = 135
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 1 MAEG-DEDLPRDAK-------IVKSLLKSMGVE---DYEPRVIHQFLELWYRYVVDVLTD 49
MAEG +E R + +V SL + + + D+ + I E+ +R D
Sbjct: 1 MAEGQEEHFSRTQRLKAAVHYVVGSLCQEVADDKEIDFSKQAIAAISEITFRQCESFAKD 60
Query: 50 AQVYSEHAGKNTIDCDDVKL 69
++++ HA + TI+ DDVKL
Sbjct: 61 LEIFARHAKRTTINMDDVKL 80
>sp|Q9Y8I1|HARA_PYRKO Archaeal histone A OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=hpkA PE=3 SV=1
Length = 67
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 15 VKSLLKSMGVEDYE---PRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAV 71
V L++ G E +V+ ++LE Y +++ A ++ HAG+ T+ +D+KLA+
Sbjct: 9 VDRLIRKAGAERVSEDAAKVLAEYLE---EYAIELSKKAVDFARHAGRKTVKAEDIKLAI 65
Query: 72 QS 73
++
Sbjct: 66 KA 67
>sp|F1NPG5|CENPT_CHICK Centromere protein T OS=Gallus gallus GN=CENPT PE=1 SV=2
Length = 639
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 10 RDAKIVKSLLK---SMGVEDYEPRVIHQFLE-LWYRYVVDVLTDAQVYSEHAGKNTIDCD 65
R+ +I SL+K S V+ R ++ +E RY + +D + YS+HAG+ T++
Sbjct: 532 REPEIASSLIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMA 591
Query: 66 DVKL 69
DV+L
Sbjct: 592 DVEL 595
>sp|Q76NW2|H4_DICDI Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1 SV=1
Length = 108
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 42 YVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQ 72
++ +V+ D+ Y+EHAG+ T+ DV A++
Sbjct: 67 FLTNVIRDSVAYTEHAGRRTVTAMDVVYALK 97
>sp|Q8NI35|INADL_HUMAN InaD-like protein OS=Homo sapiens GN=INADL PE=1 SV=3
Length = 1801
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 83 PAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQLSIEKKES-AQAAEEMEE 141
P +E+++E++K R+ + L + G+ PL +I Y+ ++ A +++ E
Sbjct: 1432 PGQEMIIEISKGRSGLGL-SIVGGKDTPL---NAIVIHEVYEEGAAARDGRLWAGDQILE 1487
Query: 142 DEQSTEPNASEEQRTDMLQQTPQKVSFPLAR 172
N+S E+ L+QTPQKV + R
Sbjct: 1488 VNGVDLRNSSHEEAITALRQTPQKVRLVVYR 1518
>sp|Q9EQH4|TAF8_MOUSE Transcription initiation factor TFIID subunit 8 OS=Mus musculus
GN=Taf8 PE=2 SV=1
Length = 308
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 14 IVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAV 71
+V SLL G E E + E+ Y+ ++ A+ Y EH + D+ + +
Sbjct: 38 VVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTL 95
>sp|A7MAZ4|TAF8_BOVIN Transcription initiation factor TFIID subunit 8 OS=Bos taurus
GN=TAF8 PE=2 SV=1
Length = 310
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 14 IVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAV 71
+V SLL G E E + E+ Y+ ++ A+ Y EH + D+ + +
Sbjct: 40 VVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTL 97
>sp|Q7Z7C8|TAF8_HUMAN Transcription initiation factor TFIID subunit 8 OS=Homo sapiens
GN=TAF8 PE=1 SV=1
Length = 310
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 14 IVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAV 71
+V SLL G E E + E+ Y+ ++ A+ Y EH + D+ + +
Sbjct: 40 VVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTL 97
>sp|Q9Y8I2|HARB_PYRKO Archaeal histone B OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=hpkB PE=3 SV=1
Length = 67
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 15 VKSLLKSMG---VEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAV 71
V L++ G V + +V+ + LE +++ A ++HAG+ T+ +D+KLA+
Sbjct: 9 VDRLIRKAGAARVSEEAAKVLAEHLE---EKALEIAKKAVALAQHAGRKTVKAEDIKLAI 65
Query: 72 QS 73
+S
Sbjct: 66 KS 67
>sp|Q4WZ44|NRPS7_ASPFU Nonribosomal peptide synthetase 7 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=NRPS7
PE=3 SV=1
Length = 2353
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 40/88 (45%)
Query: 24 VEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQPP 83
++ ++P + +F + + V +Q+ E+ + CD + A Q +V
Sbjct: 1040 LQQHDPVAMQEFWQGYLEGAVPSHLGSQIAPENTVAAEVHCDLKRTASQRRVTPGVLLYA 1099
Query: 84 AREVLLELAKNRNKIPLPKSIAGRGIPL 111
A ++L LA + + + + +GR +PL
Sbjct: 1100 AWAIVLGLANSTEDVVMGVTFSGRDVPL 1127
>sp|O29910|HAF1_ARCFU Probable archaeal histone A1-1 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=hpyA1-1 PE=3 SV=1
Length = 72
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 42 YVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQ 72
Y + + A ++HAG+ T+ DD+KLA++
Sbjct: 40 YAMQIGKKAAELAKHAGRKTVKVDDIKLALR 70
>sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5
Length = 783
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 39 WYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQPP----------AREVL 88
W + + +VYS H G+ I C+ K A + NS+ Q RE+
Sbjct: 420 WTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREIT 479
Query: 89 LELAKNRN-KIPLPKSIAGRGIPLPPEQDTLI 119
L+ +N + + + ++A RG+ + PE D +I
Sbjct: 480 LKGFRNGSFGVLVATNVAARGLDI-PEVDLVI 510
>sp|Q9V1F5|HARB_PYRAB Archaeal histone B OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=PYRAB04720 PE=3 SV=1
Length = 67
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 15 VKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73
V L++ G + + E +++ A ++HAG+ T+ +D+KLA++S
Sbjct: 9 VDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVEDIKLAIRS 67
>sp|O59627|HARB_PYRFU Archaeal histone B OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=PF1722 PE=3 SV=2
Length = 67
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 15 VKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73
V L++ G + + E +++ A ++HAG+ T+ +D+KLA++S
Sbjct: 9 VDRLIRKAGAQRVSEQAAKVLAEHLEEKAIEIAKKAVDLAKHAGRKTVKVEDIKLAIKS 67
>sp|O74092|HARB_PYRHO Archaeal histone B OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1701.1
PE=3 SV=2
Length = 67
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 15 VKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 73
V L++ G + + E +++ A ++HAG+ T+ +D+KLA++S
Sbjct: 9 VDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIARKAVDLAKHAGRKTVKVEDIKLAIRS 67
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,427,518
Number of Sequences: 539616
Number of extensions: 2501908
Number of successful extensions: 11798
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 11475
Number of HSP's gapped (non-prelim): 282
length of query: 175
length of database: 191,569,459
effective HSP length: 110
effective length of query: 65
effective length of database: 132,211,699
effective search space: 8593760435
effective search space used: 8593760435
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)