Query 030549
Match_columns 175
No_of_seqs 184 out of 1208
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 01:13:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 2.9E-34 1E-38 236.8 10.8 161 1-167 53-247 (366)
2 3gfo_A Cobalt import ATP-bindi 100.0 2.5E-34 8.5E-39 229.8 9.9 159 1-165 33-225 (275)
3 2pcj_A ABC transporter, lipopr 100.0 9.7E-34 3.3E-38 220.1 12.3 158 1-165 29-220 (224)
4 1vpl_A ABC transporter, ATP-bi 100.0 1.4E-33 4.6E-38 223.4 12.7 158 1-164 40-226 (256)
5 3rlf_A Maltose/maltodextrin im 100.0 8.8E-34 3E-38 235.2 12.1 158 1-164 28-214 (381)
6 3tif_A Uncharacterized ABC tra 100.0 1.4E-33 4.7E-38 220.8 12.5 158 1-165 30-226 (235)
7 2olj_A Amino acid ABC transpor 100.0 1.8E-33 6E-38 223.6 12.4 158 1-164 49-239 (263)
8 1b0u_A Histidine permease; ABC 100.0 1.2E-33 4.1E-38 224.4 11.4 158 1-164 31-233 (262)
9 3fvq_A Fe(3+) IONS import ATP- 100.0 1.7E-33 6E-38 231.9 12.1 158 1-164 29-219 (359)
10 1g6h_A High-affinity branched- 100.0 2.8E-33 9.7E-38 221.6 11.6 158 1-164 32-233 (257)
11 4g1u_C Hemin import ATP-bindin 100.0 2.8E-33 9.7E-38 222.7 11.4 161 1-165 36-229 (266)
12 1ji0_A ABC transporter; ATP bi 100.0 2E-33 6.8E-38 220.5 10.3 158 1-164 31-219 (240)
13 2onk_A Molybdate/tungstate ABC 100.0 3.6E-33 1.2E-37 219.1 10.7 156 3-164 25-207 (240)
14 1z47_A CYSA, putative ABC-tran 100.0 5.3E-33 1.8E-37 228.9 11.8 157 1-163 40-225 (355)
15 2yyz_A Sugar ABC transporter, 100.0 6.4E-33 2.2E-37 228.8 12.0 157 1-163 28-213 (359)
16 2it1_A 362AA long hypothetical 100.0 8.1E-33 2.8E-37 228.4 12.4 157 1-163 28-213 (362)
17 3d31_A Sulfate/molybdate ABC t 100.0 8.4E-33 2.9E-37 227.3 11.9 158 1-164 25-208 (348)
18 1sgw_A Putative ABC transporte 100.0 8.4E-33 2.9E-37 213.6 10.3 154 1-161 34-210 (214)
19 1oxx_K GLCV, glucose, ABC tran 100.0 8E-33 2.7E-37 227.9 10.6 157 1-163 30-220 (353)
20 1g29_1 MALK, maltose transport 100.0 1.4E-32 4.8E-37 227.8 11.6 158 1-164 28-220 (372)
21 2yz2_A Putative ABC transporte 100.0 3.3E-32 1.1E-36 216.5 11.6 158 1-164 32-218 (266)
22 1v43_A Sugar-binding transport 100.0 1.1E-32 3.7E-37 228.3 8.8 155 1-163 36-221 (372)
23 2qi9_C Vitamin B12 import ATP- 100.0 3.5E-32 1.2E-36 214.5 11.1 156 1-163 25-212 (249)
24 2d2e_A SUFC protein; ABC-ATPas 100.0 6.9E-32 2.3E-36 212.9 10.8 159 1-165 28-225 (250)
25 2ihy_A ABC transporter, ATP-bi 100.0 3.4E-32 1.2E-36 217.8 8.9 161 1-165 46-244 (279)
26 2ff7_A Alpha-hemolysin translo 100.0 7.9E-32 2.7E-36 212.2 9.4 153 1-164 34-223 (247)
27 2nq2_C Hypothetical ABC transp 100.0 1.7E-31 5.9E-36 211.0 10.9 155 1-161 30-206 (253)
28 1mv5_A LMRA, multidrug resista 100.0 1.5E-31 5E-36 210.1 10.1 156 1-164 27-217 (243)
29 2zu0_C Probable ATP-dependent 100.0 5.6E-31 1.9E-35 209.5 11.6 159 1-165 45-246 (267)
30 2ixe_A Antigen peptide transpo 100.0 7.5E-31 2.6E-35 209.2 10.9 156 1-163 44-235 (271)
31 2pjz_A Hypothetical protein ST 100.0 3.8E-30 1.3E-34 204.4 11.4 154 2-165 30-207 (263)
32 3nh6_A ATP-binding cassette SU 100.0 1.3E-30 4.6E-35 210.9 7.9 155 1-166 79-270 (306)
33 2ghi_A Transport protein; mult 100.0 2E-30 6.7E-35 205.7 7.4 155 1-164 45-233 (260)
34 2pze_A Cystic fibrosis transme 100.0 3.4E-30 1.2E-34 200.7 6.0 156 1-165 33-210 (229)
35 3ozx_A RNAse L inhibitor; ATP 100.0 3.5E-29 1.2E-33 216.2 10.4 155 1-161 293-463 (538)
36 2cbz_A Multidrug resistance-as 100.0 1.2E-29 4.1E-34 198.6 5.8 155 1-164 30-208 (237)
37 3ozx_A RNAse L inhibitor; ATP 100.0 2.1E-28 7E-33 211.4 9.7 155 1-162 24-215 (538)
38 1yqt_A RNAse L inhibitor; ATP- 99.9 2.5E-28 8.6E-33 210.9 10.1 154 1-160 46-234 (538)
39 3gd7_A Fusion complex of cysti 99.9 7.8E-29 2.7E-33 206.4 6.4 156 1-165 46-234 (390)
40 3b5x_A Lipid A export ATP-bind 99.9 5E-28 1.7E-32 210.7 10.8 155 1-166 368-560 (582)
41 3b60_A Lipid A export ATP-bind 99.9 3.7E-28 1.3E-32 211.6 8.2 153 1-164 368-558 (582)
42 3bk7_A ABC transporter ATP-bin 99.9 6.6E-28 2.3E-32 210.7 9.6 155 1-161 116-305 (607)
43 3j16_B RLI1P; ribosome recycli 99.9 4.2E-28 1.4E-32 211.8 8.3 156 1-162 102-299 (608)
44 3qf4_A ABC transporter, ATP-bi 99.9 1.1E-27 3.8E-32 208.8 10.1 155 1-166 368-559 (587)
45 2bbs_A Cystic fibrosis transme 99.9 1.5E-28 5.1E-33 197.6 4.1 154 1-163 63-237 (290)
46 3qf4_B Uncharacterized ABC tra 99.9 7.8E-28 2.7E-32 210.1 8.8 156 1-167 380-572 (598)
47 3bk7_A ABC transporter ATP-bin 99.9 3.7E-27 1.3E-31 206.0 12.9 152 1-159 381-547 (607)
48 4a82_A Cystic fibrosis transme 99.9 8.2E-28 2.8E-32 209.3 8.4 159 1-167 366-558 (578)
49 2yl4_A ATP-binding cassette SU 99.9 4.5E-28 1.5E-32 211.5 6.8 157 1-165 369-562 (595)
50 1yqt_A RNAse L inhibitor; ATP- 99.9 2.6E-27 8.9E-32 204.6 10.1 152 1-159 311-477 (538)
51 3j16_B RLI1P; ribosome recycli 99.9 6.9E-27 2.4E-31 204.2 11.6 152 1-159 377-543 (608)
52 3g5u_A MCG1178, multidrug resi 99.9 2.4E-25 8.1E-30 208.1 8.2 160 1-168 415-608 (1284)
53 3g5u_A MCG1178, multidrug resi 99.9 2.4E-25 8.4E-30 208.0 7.0 159 1-167 1058-1252(1284)
54 3ux8_A Excinuclease ABC, A sub 99.9 2.6E-24 8.9E-29 190.0 12.4 150 1-157 43-276 (670)
55 2iw3_A Elongation factor 3A; a 99.9 2E-24 6.8E-29 195.9 6.5 78 80-166 903-980 (986)
56 4f4c_A Multidrug resistance pr 99.9 5.3E-24 1.8E-28 199.4 8.7 160 1-168 443-636 (1321)
57 4f4c_A Multidrug resistance pr 99.9 3E-24 1E-28 201.1 6.2 159 1-167 1104-1298(1321)
58 3b85_A Phosphate starvation-in 99.9 1.1E-24 3.7E-29 167.4 0.4 135 1-149 21-163 (208)
59 2iw3_A Elongation factor 3A; a 99.9 3.1E-23 1.1E-27 188.1 8.0 151 1-163 460-624 (986)
60 3ux8_A Excinuclease ABC, A sub 99.9 1.9E-22 6.5E-27 178.1 9.8 79 80-165 545-632 (670)
61 4gp7_A Metallophosphoesterase; 99.9 1.7E-23 5.9E-28 155.6 1.0 129 1-150 8-165 (171)
62 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.2E-22 4E-27 172.5 5.0 147 1-163 137-329 (460)
63 2ehv_A Hypothetical protein PH 99.8 4.2E-21 1.4E-25 149.0 7.7 149 1-159 29-207 (251)
64 2vf7_A UVRA2, excinuclease ABC 99.8 5.3E-21 1.8E-25 171.8 8.6 91 60-157 711-805 (842)
65 2pt7_A CAG-ALFA; ATPase, prote 99.8 1.6E-21 5.4E-26 159.2 4.0 122 1-161 170-291 (330)
66 1znw_A Guanylate kinase, GMP k 99.8 2.4E-22 8.1E-27 153.5 -1.8 150 1-158 19-202 (207)
67 3b9q_A Chloroplast SRP recepto 99.8 1E-19 3.4E-24 146.9 11.7 147 1-163 99-285 (302)
68 4aby_A DNA repair protein RECN 99.8 1.7E-20 6E-25 156.3 6.8 75 80-162 297-377 (415)
69 2r6f_A Excinuclease ABC subuni 99.8 9.4E-20 3.2E-24 164.7 10.2 90 61-157 827-920 (972)
70 4a74_A DNA repair and recombin 99.8 7.6E-20 2.6E-24 140.2 6.9 153 1-161 24-201 (231)
71 2og2_A Putative signal recogni 99.8 6.7E-19 2.3E-23 145.1 12.6 147 1-163 156-342 (359)
72 2ygr_A Uvrabc system protein A 99.8 9.8E-20 3.4E-24 165.0 8.2 90 61-157 845-938 (993)
73 3pih_A Uvrabc system protein A 99.8 1E-19 3.5E-24 164.7 7.8 99 61-166 787-895 (916)
74 1ye8_A Protein THEP1, hypothet 99.8 1.1E-20 3.6E-25 141.8 1.1 134 4-153 2-152 (178)
75 2eyu_A Twitching motility prot 99.8 1.5E-19 5.3E-24 143.1 7.1 124 1-160 24-148 (261)
76 1tq4_A IIGP1, interferon-induc 99.8 1.3E-20 4.4E-25 157.8 -1.0 146 4-155 71-248 (413)
77 1e69_A Chromosome segregation 99.8 7E-18 2.4E-22 136.9 12.9 75 81-161 222-300 (322)
78 3jvv_A Twitching mobility prot 99.7 1.4E-18 4.7E-23 143.2 5.2 125 1-161 122-247 (356)
79 1tf7_A KAIC; homohexamer, hexa 99.7 1.2E-18 4E-23 150.0 5.0 145 1-160 38-210 (525)
80 1rj9_A FTSY, signal recognitio 99.7 2E-17 7E-22 133.5 10.3 129 2-146 102-260 (304)
81 1tf7_A KAIC; homohexamer, hexa 99.7 5.9E-18 2E-22 145.6 7.2 148 1-161 280-444 (525)
82 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 1.1E-17 3.6E-22 138.2 8.2 75 82-163 283-363 (365)
83 1cr0_A DNA primase/helicase; R 99.7 3.2E-18 1.1E-22 136.9 4.3 153 1-162 34-237 (296)
84 2w0m_A SSO2452; RECA, SSPF, un 99.7 3.9E-17 1.3E-21 124.9 10.0 151 1-161 22-193 (235)
85 2i3b_A HCR-ntpase, human cance 99.7 3.7E-19 1.3E-23 134.6 -5.0 37 2-40 1-37 (189)
86 2o8b_B DNA mismatch repair pro 99.6 7.5E-17 2.6E-21 147.8 5.6 133 2-158 789-926 (1022)
87 1s96_A Guanylate kinase, GMP k 99.6 5.2E-17 1.8E-21 125.4 3.4 122 1-149 15-145 (219)
88 3thx_A DNA mismatch repair pro 99.6 1.3E-16 4.6E-21 144.8 6.6 132 1-164 661-804 (934)
89 1z6g_A Guanylate kinase; struc 99.6 1.9E-18 6.5E-23 133.1 -5.7 142 1-155 22-205 (218)
90 2ewv_A Twitching motility prot 99.6 1E-15 3.4E-20 126.7 6.3 121 1-160 135-259 (372)
91 3sop_A Neuronal-specific septi 99.6 3E-16 1E-20 124.7 2.9 37 4-40 4-40 (270)
92 2kjq_A DNAA-related protein; s 99.6 2.2E-15 7.5E-20 109.6 7.2 87 1-143 35-124 (149)
93 1ewq_A DNA mismatch repair pro 99.6 8.8E-16 3E-20 137.1 5.4 123 2-148 576-702 (765)
94 1n0w_A DNA repair protein RAD5 99.6 1.6E-14 5.6E-19 111.3 11.2 140 1-160 23-209 (243)
95 3e70_C DPA, signal recognition 99.6 5.2E-15 1.8E-19 120.6 8.7 130 1-144 128-279 (328)
96 3thx_B DNA mismatch repair pro 99.6 7.2E-16 2.5E-20 139.7 4.0 129 1-152 672-803 (918)
97 1pzn_A RAD51, DNA repair and r 99.6 1.1E-15 3.8E-20 125.5 4.7 136 1-149 130-291 (349)
98 3szr_A Interferon-induced GTP- 99.6 4E-16 1.4E-20 136.5 1.0 136 4-147 47-199 (608)
99 3qkt_A DNA double-strand break 99.6 1.9E-14 6.6E-19 117.4 10.8 69 86-161 262-330 (339)
100 3ec2_A DNA replication protein 99.6 2E-15 6.7E-20 112.2 4.1 107 2-147 38-146 (180)
101 1wb9_A DNA mismatch repair pro 99.5 3.9E-15 1.3E-19 133.6 6.4 137 1-160 606-745 (800)
102 2obl_A ESCN; ATPase, hydrolase 99.5 3.9E-16 1.3E-20 128.1 -1.3 155 1-168 70-250 (347)
103 3aez_A Pantothenate kinase; tr 99.5 1.4E-16 4.7E-21 129.1 -4.2 32 1-32 89-120 (312)
104 2cvh_A DNA repair and recombin 99.5 2.4E-14 8.4E-19 108.7 8.6 144 1-160 19-185 (220)
105 2gza_A Type IV secretion syste 99.5 1.4E-14 4.8E-19 119.4 6.3 129 1-161 174-303 (361)
106 2dpy_A FLII, flagellum-specifi 99.5 1.1E-15 3.6E-20 129.1 -1.2 153 1-167 156-338 (438)
107 1nlf_A Regulatory protein REPA 99.5 2E-14 6.8E-19 114.0 5.6 136 1-148 29-185 (279)
108 1lw7_A Transcriptional regulat 99.5 1.9E-15 6.5E-20 124.5 -2.2 147 2-157 170-341 (365)
109 1htw_A HI0065; nucleotide-bind 99.4 4E-14 1.4E-18 104.0 3.2 40 1-41 32-71 (158)
110 2bdt_A BH3686; alpha-beta prot 99.4 5.1E-14 1.7E-18 105.2 3.4 38 1-41 1-38 (189)
111 3asz_A Uridine kinase; cytidin 99.4 3E-14 1E-18 108.1 0.9 28 1-28 5-32 (211)
112 2v9p_A Replication protein E1; 99.4 1E-14 3.6E-19 117.6 -3.0 124 1-165 125-258 (305)
113 3lda_A DNA repair protein RAD5 99.4 1.6E-12 5.4E-17 108.5 10.1 140 1-160 177-363 (400)
114 2o5v_A DNA replication and rep 99.3 4.4E-12 1.5E-16 104.4 9.5 71 82-165 269-348 (359)
115 2yhs_A FTSY, cell division pro 99.3 4.7E-12 1.6E-16 107.9 9.5 40 1-40 292-331 (503)
116 2jeo_A Uridine-cytidine kinase 99.3 2E-13 6.8E-18 106.4 0.3 26 1-26 24-49 (245)
117 2bbw_A Adenylate kinase 4, AK4 99.3 7.7E-14 2.6E-18 108.6 -3.5 37 2-38 27-66 (246)
118 1nij_A Hypothetical protein YJ 99.3 9.3E-13 3.2E-17 106.6 2.6 39 3-41 5-51 (318)
119 3pih_A Uvrabc system protein A 99.2 4.4E-12 1.5E-16 115.1 5.2 145 17-168 383-555 (916)
120 1vma_A Cell division protein F 99.2 4.4E-11 1.5E-15 96.4 9.0 95 1-109 103-197 (306)
121 2px0_A Flagellar biosynthesis 99.2 1.4E-11 4.8E-16 98.9 6.1 131 1-155 104-237 (296)
122 1sxj_E Activator 1 40 kDa subu 99.2 1.2E-11 4E-16 100.4 5.7 36 5-40 39-75 (354)
123 2dr3_A UPF0273 protein PH0284; 99.2 1.7E-11 5.7E-16 94.4 6.0 59 98-160 128-197 (247)
124 2qnr_A Septin-2, protein NEDD5 99.2 3.3E-12 1.1E-16 102.8 1.7 35 5-40 21-56 (301)
125 3euj_A Chromosome partition pr 99.2 4.4E-12 1.5E-16 107.9 2.5 38 3-40 30-67 (483)
126 1f2t_B RAD50 ABC-ATPase; DNA d 99.2 6E-11 2.1E-15 86.1 7.2 72 81-159 60-137 (148)
127 1zp6_A Hypothetical protein AT 99.1 2.8E-11 9.5E-16 90.0 4.5 38 1-40 8-45 (191)
128 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 2.5E-13 8.7E-18 113.0 -7.4 149 1-165 19-205 (392)
129 1ls1_A Signal recognition part 99.1 1E-10 3.4E-15 93.8 7.3 92 1-107 97-189 (295)
130 2qag_C Septin-7; cell cycle, c 99.1 1.1E-10 3.9E-15 97.8 7.9 27 5-31 34-60 (418)
131 3c8u_A Fructokinase; YP_612366 99.1 1.3E-11 4.6E-16 93.6 2.0 40 1-40 21-63 (208)
132 1sq5_A Pantothenate kinase; P- 99.1 2.7E-11 9.3E-16 97.5 3.5 39 1-39 79-122 (308)
133 3a00_A Guanylate kinase, GMP k 99.1 3.1E-11 1.1E-15 90.0 3.3 31 2-32 1-31 (186)
134 1u0l_A Probable GTPase ENGC; p 99.1 4.3E-11 1.5E-15 96.1 3.9 40 1-40 168-210 (301)
135 2qm8_A GTPase/ATPase; G protei 99.1 5.3E-11 1.8E-15 97.1 4.0 42 1-42 54-95 (337)
136 2qag_B Septin-6, protein NEDD5 99.1 2.3E-10 7.8E-15 96.0 7.2 26 1-26 39-66 (427)
137 1pui_A ENGB, probable GTP-bind 99.1 5.9E-11 2E-15 89.2 3.2 35 1-35 25-64 (210)
138 2r6f_A Excinuclease ABC subuni 99.1 4E-10 1.4E-14 102.3 8.9 103 62-171 487-598 (972)
139 1qhl_A Protein (cell division 99.0 5.8E-12 2E-16 97.6 -3.0 38 3-40 28-65 (227)
140 1lvg_A Guanylate kinase, GMP k 99.0 5.5E-11 1.9E-15 89.8 2.5 27 1-27 3-29 (198)
141 3tr0_A Guanylate kinase, GMP k 99.0 1.4E-10 4.7E-15 87.1 4.2 34 1-38 6-39 (205)
142 1p9r_A General secretion pathw 99.0 1.4E-10 4.6E-15 97.3 4.6 40 1-40 166-205 (418)
143 2ygr_A Uvrabc system protein A 99.0 4E-10 1.4E-14 102.5 7.4 83 80-169 523-613 (993)
144 2yv5_A YJEQ protein; hydrolase 99.0 2.2E-10 7.4E-15 92.1 4.4 39 1-40 164-205 (302)
145 3lnc_A Guanylate kinase, GMP k 99.0 1.2E-10 4.2E-15 89.5 2.7 28 1-28 26-54 (231)
146 2vf7_A UVRA2, excinuclease ABC 99.0 1.1E-09 3.8E-14 98.7 9.0 103 62-171 362-473 (842)
147 2rcn_A Probable GTPase ENGC; Y 99.0 2.8E-10 9.5E-15 93.6 4.3 39 1-39 214-254 (358)
148 1kgd_A CASK, peripheral plasma 99.0 2.9E-10 9.9E-15 84.4 3.8 40 1-40 4-44 (180)
149 2oap_1 GSPE-2, type II secreti 99.0 4E-10 1.4E-14 96.7 4.6 39 1-39 259-297 (511)
150 1t9h_A YLOQ, probable GTPase E 98.9 1.1E-10 3.7E-15 94.2 0.3 40 1-40 172-214 (307)
151 4eun_A Thermoresistant glucoki 98.9 6.2E-10 2.1E-14 83.8 3.7 36 1-40 28-63 (200)
152 4e22_A Cytidylate kinase; P-lo 98.9 2.3E-10 7.8E-15 89.5 0.8 40 1-40 26-76 (252)
153 2f1r_A Molybdopterin-guanine d 98.9 2.1E-10 7.2E-15 85.1 0.1 37 3-39 3-42 (171)
154 3uie_A Adenylyl-sulfate kinase 98.9 6.8E-10 2.3E-14 83.6 2.9 40 1-41 24-65 (200)
155 1udx_A The GTP-binding protein 98.9 6.3E-09 2.1E-13 87.1 8.5 36 2-37 157-203 (416)
156 2vp4_A Deoxynucleoside kinase; 98.9 1.4E-09 4.9E-14 83.7 4.2 36 1-40 19-54 (230)
157 1rz3_A Hypothetical protein rb 98.9 9.8E-10 3.4E-14 82.9 3.2 40 1-40 21-60 (201)
158 2zr9_A Protein RECA, recombina 98.9 5.3E-09 1.8E-13 85.7 7.7 37 1-37 60-96 (349)
159 2r6a_A DNAB helicase, replicat 98.8 2.5E-09 8.6E-14 90.3 5.6 39 1-39 202-241 (454)
160 2j41_A Guanylate kinase; GMP, 98.8 1.6E-09 5.5E-14 81.2 3.9 31 1-31 5-35 (207)
161 3tau_A Guanylate kinase, GMP k 98.8 4E-09 1.4E-13 80.0 4.4 39 1-39 7-46 (208)
162 1knq_A Gluconate kinase; ALFA/ 98.7 4.7E-09 1.6E-13 76.9 3.7 36 1-40 7-42 (175)
163 1jjv_A Dephospho-COA kinase; P 98.7 8.2E-09 2.8E-13 77.6 5.0 30 3-37 3-32 (206)
164 3kl4_A SRP54, signal recogniti 98.7 1.6E-08 5.4E-13 85.1 7.1 39 2-40 97-135 (433)
165 3kta_A Chromosome segregation 98.7 7.6E-09 2.6E-13 76.3 3.4 29 4-32 28-56 (182)
166 3ney_A 55 kDa erythrocyte memb 98.7 7.6E-09 2.6E-13 78.3 3.4 27 1-27 18-44 (197)
167 3hr8_A Protein RECA; alpha and 98.7 6.2E-08 2.1E-12 79.5 9.1 35 1-35 60-94 (356)
168 4ad8_A DNA repair protein RECN 98.7 2.4E-08 8.3E-13 85.5 6.5 71 82-160 401-473 (517)
169 1kag_A SKI, shikimate kinase I 98.7 9.9E-09 3.4E-13 74.9 3.2 33 1-37 3-35 (173)
170 1oix_A RAS-related protein RAB 98.7 1.1E-08 3.7E-13 76.2 3.2 36 4-39 31-77 (191)
171 3cr8_A Sulfate adenylyltranfer 98.6 6.6E-09 2.3E-13 89.8 2.1 40 1-40 368-409 (552)
172 3tqc_A Pantothenate kinase; bi 98.6 1.4E-08 4.9E-13 82.3 3.9 36 4-39 94-131 (321)
173 1fnn_A CDC6P, cell division co 98.6 1.1E-07 3.8E-12 77.4 9.2 26 4-29 46-71 (389)
174 2www_A Methylmalonic aciduria 98.6 2.1E-08 7.3E-13 82.0 4.0 41 2-42 74-114 (349)
175 2x8a_A Nuclear valosin-contain 98.6 2.8E-08 9.4E-13 78.7 4.1 34 5-40 47-80 (274)
176 2qby_A CDC6 homolog 1, cell di 98.6 4.6E-08 1.6E-12 79.3 5.5 29 2-30 45-73 (386)
177 2ius_A DNA translocase FTSK; n 98.5 1.7E-07 6E-12 80.2 8.0 41 2-42 167-209 (512)
178 1zu4_A FTSY; GTPase, signal re 98.5 4.4E-08 1.5E-12 79.3 4.1 41 1-41 104-144 (320)
179 1cke_A CK, MSSA, protein (cyti 98.5 1.8E-08 6.2E-13 76.6 1.6 34 2-35 5-41 (227)
180 3m6a_A ATP-dependent protease 98.5 2.1E-08 7.3E-13 86.5 1.9 37 1-37 107-143 (543)
181 2f9l_A RAB11B, member RAS onco 98.5 4.8E-08 1.6E-12 72.8 3.5 36 4-39 7-53 (199)
182 2z4s_A Chromosomal replication 98.5 2.6E-07 8.9E-12 77.7 8.2 25 3-27 131-155 (440)
183 2pez_A Bifunctional 3'-phospho 98.5 5.3E-08 1.8E-12 71.6 3.3 39 1-40 4-44 (179)
184 2ce7_A Cell division protein F 98.5 5E-07 1.7E-11 76.8 9.0 22 5-26 52-73 (476)
185 3kta_B Chromosome segregation 98.5 3.9E-07 1.3E-11 67.5 7.3 73 80-158 66-140 (173)
186 1w1w_A Structural maintenance 98.5 7E-08 2.4E-12 80.8 3.5 72 83-159 338-411 (430)
187 2p67_A LAO/AO transport system 98.4 1.1E-07 3.9E-12 77.3 3.6 42 1-42 55-96 (341)
188 1in4_A RUVB, holliday junction 98.4 4E-08 1.4E-12 79.7 0.4 37 3-39 52-92 (334)
189 1m7g_A Adenylylsulfate kinase; 98.4 1.1E-07 3.9E-12 71.8 2.5 39 1-39 24-64 (211)
190 1w1w_A Structural maintenance 98.4 5.3E-07 1.8E-11 75.4 6.8 29 2-30 26-54 (430)
191 1ixz_A ATP-dependent metallopr 98.4 2.3E-07 8E-12 71.9 3.8 33 5-39 52-84 (254)
192 2qt1_A Nicotinamide riboside k 98.3 2.5E-07 8.5E-12 69.5 3.7 27 1-27 20-46 (207)
193 2xau_A PRE-mRNA-splicing facto 98.3 2.5E-07 8.6E-12 82.9 3.9 29 2-30 109-137 (773)
194 1iy2_A ATP-dependent metallopr 98.3 3E-07 1E-11 72.3 3.9 33 5-39 76-108 (278)
195 2yvu_A Probable adenylyl-sulfa 98.3 3.5E-07 1.2E-11 67.6 3.4 35 1-35 12-46 (186)
196 3auy_A DNA double-strand break 98.3 1.6E-06 5.4E-11 71.2 6.9 68 83-158 285-359 (371)
197 3bos_A Putative DNA replicatio 98.3 1.5E-06 5.3E-11 65.7 6.4 28 2-29 52-79 (242)
198 1ypw_A Transitional endoplasmi 98.3 2.1E-06 7.2E-11 77.3 8.3 27 2-28 238-264 (806)
199 2w58_A DNAI, primosome compone 98.2 3.6E-06 1.2E-10 62.7 8.0 29 3-31 55-83 (202)
200 2ffh_A Protein (FFH); SRP54, s 98.2 7.3E-07 2.5E-11 74.8 4.5 41 1-41 97-137 (425)
201 1svm_A Large T antigen; AAA+ f 98.2 5.6E-07 1.9E-11 74.4 3.7 32 1-35 168-199 (377)
202 3vaa_A Shikimate kinase, SK; s 98.2 7.9E-07 2.7E-11 66.5 3.5 26 1-26 24-49 (199)
203 1j8m_F SRP54, signal recogniti 98.2 7E-07 2.4E-11 71.5 3.1 40 2-41 98-137 (297)
204 1f2t_A RAD50 ABC-ATPase; DNA d 98.2 9.9E-07 3.4E-11 63.5 3.6 22 3-24 24-45 (149)
205 2if2_A Dephospho-COA kinase; a 98.2 7.6E-07 2.6E-11 66.5 2.9 22 4-25 3-24 (204)
206 3b9p_A CG5977-PA, isoform A; A 98.2 1.6E-05 5.6E-10 62.6 10.8 26 2-27 54-79 (297)
207 3k1j_A LON protease, ATP-depen 98.2 1.4E-06 4.8E-11 75.9 4.9 40 1-40 59-99 (604)
208 1odf_A YGR205W, hypothetical 3 98.2 6.1E-07 2.1E-11 71.6 2.4 28 2-29 31-58 (290)
209 3t61_A Gluconokinase; PSI-biol 98.2 8.8E-07 3E-11 66.2 2.9 33 2-38 18-50 (202)
210 3nwj_A ATSK2; P loop, shikimat 98.1 9.2E-07 3.1E-11 69.2 3.0 27 1-27 47-73 (250)
211 2qor_A Guanylate kinase; phosp 98.1 9.8E-07 3.3E-11 66.3 3.1 27 1-27 11-37 (204)
212 4eaq_A DTMP kinase, thymidylat 98.1 1.7E-06 5.9E-11 66.5 4.3 35 1-36 25-59 (229)
213 3cm0_A Adenylate kinase; ATP-b 98.1 8.3E-07 2.8E-11 65.2 2.2 24 1-24 3-26 (186)
214 1v5w_A DMC1, meiotic recombina 98.1 9.2E-06 3.1E-10 66.1 8.5 25 1-25 121-145 (343)
215 4a1f_A DNAB helicase, replicat 98.1 6.7E-06 2.3E-10 67.0 7.1 37 1-37 45-81 (338)
216 1u94_A RECA protein, recombina 98.1 9.8E-06 3.4E-10 66.4 8.1 37 1-37 62-99 (356)
217 1l8q_A Chromosomal replication 98.1 8.4E-06 2.9E-10 65.2 7.3 27 3-29 38-64 (324)
218 1mky_A Probable GTP-binding pr 98.1 2.2E-06 7.5E-11 71.9 4.1 36 4-39 182-229 (439)
219 2qtf_A Protein HFLX, GTP-bindi 98.1 2.4E-06 8E-11 70.3 3.9 36 4-39 181-227 (364)
220 2ohf_A Protein OLA1, GTP-bindi 98.0 2.4E-06 8.3E-11 71.0 3.6 36 2-37 22-68 (396)
221 2b8t_A Thymidine kinase; deoxy 98.0 1.1E-05 3.6E-10 62.1 6.8 36 1-36 11-46 (223)
222 1q3t_A Cytidylate kinase; nucl 98.0 1.6E-06 5.6E-11 66.5 2.2 33 1-33 15-50 (236)
223 2gj8_A MNME, tRNA modification 98.0 2.7E-06 9.2E-11 61.9 3.2 26 1-26 3-28 (172)
224 3dm5_A SRP54, signal recogniti 98.0 3.2E-05 1.1E-09 65.1 9.9 38 2-39 100-137 (443)
225 2wjg_A FEOB, ferrous iron tran 98.0 4.3E-06 1.5E-10 61.0 3.7 22 4-25 9-30 (188)
226 3qks_A DNA double-strand break 98.0 3.9E-06 1.3E-10 63.4 3.4 21 3-23 24-44 (203)
227 1qhx_A CPT, protein (chloramph 98.0 4.4E-06 1.5E-10 60.8 3.6 27 1-27 2-28 (178)
228 2wji_A Ferrous iron transport 98.0 5.7E-06 2E-10 59.6 4.0 24 4-27 5-28 (165)
229 2z43_A DNA repair and recombin 98.0 3.7E-05 1.3E-09 61.9 9.2 26 1-26 106-131 (324)
230 2p5t_B PEZT; postsegregational 97.9 4.1E-06 1.4E-10 65.1 3.1 37 2-40 32-68 (253)
231 2zej_A Dardarin, leucine-rich 97.9 4.3E-06 1.5E-10 61.3 3.1 25 4-28 4-28 (184)
232 1np6_A Molybdopterin-guanine d 97.9 3.7E-06 1.3E-10 62.2 2.5 27 3-29 7-33 (174)
233 2v1u_A Cell division control p 97.9 1.5E-05 5.3E-10 64.4 5.7 27 2-28 44-70 (387)
234 3kb2_A SPBC2 prophage-derived 97.9 7.6E-06 2.6E-10 59.0 3.3 24 4-27 3-26 (173)
235 1ega_A Protein (GTP-binding pr 97.9 5.9E-06 2E-10 66.0 2.9 25 2-26 8-32 (301)
236 3h4m_A Proteasome-activating n 97.9 0.00016 5.4E-09 56.5 11.1 25 3-27 52-76 (285)
237 1yrb_A ATP(GTP)binding protein 97.9 5E-05 1.7E-09 58.5 8.1 46 3-49 15-60 (262)
238 3r20_A Cytidylate kinase; stru 97.9 4.4E-06 1.5E-10 64.7 1.9 30 4-33 11-43 (233)
239 1sxj_C Activator 1 40 kDa subu 97.8 3.7E-06 1.3E-10 67.9 1.4 35 2-36 44-80 (340)
240 1kht_A Adenylate kinase; phosp 97.8 9.6E-06 3.3E-10 59.4 3.5 26 2-27 3-28 (192)
241 1xp8_A RECA protein, recombina 97.8 6.9E-05 2.4E-09 61.6 8.7 37 1-37 73-109 (366)
242 1y63_A LMAJ004144AAA protein; 97.8 1.2E-05 3.9E-10 59.4 3.6 24 2-25 10-33 (184)
243 1jal_A YCHF protein; nucleotid 97.8 1.4E-05 4.9E-10 65.6 4.4 37 1-37 1-48 (363)
244 1ly1_A Polynucleotide kinase; 97.8 1.3E-05 4.5E-10 58.1 3.8 24 1-24 1-24 (181)
245 4ad8_A DNA repair protein RECN 97.8 3.2E-06 1.1E-10 72.4 0.5 22 4-25 62-83 (517)
246 3lxx_A GTPase IMAP family memb 97.8 1.3E-05 4.3E-10 61.5 3.8 29 4-32 31-59 (239)
247 1vht_A Dephospho-COA kinase; s 97.8 1.2E-05 4.2E-10 60.6 3.6 23 2-24 4-26 (218)
248 3lw7_A Adenylate kinase relate 97.8 1.2E-05 4.2E-10 57.7 3.2 19 4-22 3-21 (179)
249 2jaq_A Deoxyguanosine kinase; 97.8 1.4E-05 4.9E-10 59.1 3.7 23 4-26 2-24 (205)
250 2dhr_A FTSH; AAA+ protein, hex 97.8 1.3E-05 4.4E-10 68.5 3.8 33 5-39 67-99 (499)
251 2rhm_A Putative kinase; P-loop 97.8 1.3E-05 4.4E-10 59.0 3.3 26 1-26 4-29 (193)
252 3bh0_A DNAB-like replicative h 97.8 0.00013 4.5E-09 58.5 9.4 25 1-25 67-91 (315)
253 2ze6_A Isopentenyl transferase 97.8 1.3E-05 4.6E-10 62.3 3.4 24 3-26 2-25 (253)
254 2qz4_A Paraplegin; AAA+, SPG7, 97.8 0.00031 1.1E-08 53.9 11.2 23 4-26 41-63 (262)
255 1gtv_A TMK, thymidylate kinase 97.8 3.9E-06 1.3E-10 62.8 0.3 31 4-34 2-32 (214)
256 3t34_A Dynamin-related protein 97.8 1.5E-05 5.1E-10 65.0 3.7 31 4-34 36-68 (360)
257 1gvn_B Zeta; postsegregational 97.8 1.7E-05 5.9E-10 62.9 4.0 34 2-37 33-66 (287)
258 1uf9_A TT1252 protein; P-loop, 97.8 1.9E-05 6.7E-10 58.4 4.0 30 3-37 9-38 (203)
259 1tev_A UMP-CMP kinase; ploop, 97.7 1.8E-05 6.1E-10 58.1 3.6 26 1-26 2-27 (196)
260 3trf_A Shikimate kinase, SK; a 97.7 1.7E-05 5.8E-10 58.1 3.5 25 2-26 5-29 (185)
261 4ag6_A VIRB4 ATPase, type IV s 97.7 1.7E-05 5.8E-10 65.3 3.7 35 3-37 36-70 (392)
262 1via_A Shikimate kinase; struc 97.7 1.4E-05 4.8E-10 58.2 2.8 23 4-26 6-28 (175)
263 2v54_A DTMP kinase, thymidylat 97.7 2.1E-05 7.2E-10 58.3 3.8 26 1-26 3-28 (204)
264 2plr_A DTMP kinase, probable t 97.7 2.1E-05 7.3E-10 58.5 3.8 27 2-28 4-30 (213)
265 3iij_A Coilin-interacting nucl 97.7 1.8E-05 6.2E-10 57.8 3.2 25 2-26 11-35 (180)
266 2c95_A Adenylate kinase 1; tra 97.7 2.1E-05 7.2E-10 57.9 3.3 25 2-26 9-33 (196)
267 4b4t_J 26S protease regulatory 97.7 0.00033 1.1E-08 58.2 10.5 115 5-158 185-317 (405)
268 2wwf_A Thymidilate kinase, put 97.7 2.4E-05 8.4E-10 58.3 3.3 25 2-26 10-34 (212)
269 1ex7_A Guanylate kinase; subst 97.7 2.3E-05 7.8E-10 58.6 3.0 23 5-27 4-26 (186)
270 2iyv_A Shikimate kinase, SK; t 97.7 2.2E-05 7.5E-10 57.5 2.9 26 1-26 1-26 (184)
271 1xjc_A MOBB protein homolog; s 97.6 3.3E-05 1.1E-09 56.8 3.6 26 4-29 6-31 (169)
272 3ake_A Cytidylate kinase; CMP 97.6 3.3E-05 1.1E-09 57.4 3.5 24 3-26 3-26 (208)
273 2bwj_A Adenylate kinase 5; pho 97.6 2.4E-05 8.2E-10 57.7 2.6 25 2-26 12-36 (199)
274 3k53_A Ferrous iron transport 97.6 2.8E-05 9.6E-10 60.8 3.0 24 4-27 5-28 (271)
275 1qf9_A UMP/CMP kinase, protein 97.6 3.6E-05 1.2E-09 56.3 3.3 25 2-26 6-30 (194)
276 2qag_A Septin-2, protein NEDD5 97.6 2.6E-05 9E-10 63.8 2.8 29 5-33 40-68 (361)
277 1nn5_A Similar to deoxythymidy 97.6 3.5E-05 1.2E-09 57.5 3.2 25 2-26 9-33 (215)
278 2dy1_A Elongation factor G; tr 97.6 2.8E-05 9.5E-10 68.6 3.0 35 2-37 9-45 (665)
279 2vli_A Antibiotic resistance p 97.6 2.5E-05 8.6E-10 56.9 2.3 26 2-27 5-30 (183)
280 1m2o_B GTP-binding protein SAR 97.6 3.9E-05 1.3E-09 56.5 3.3 21 4-24 25-45 (190)
281 1e6c_A Shikimate kinase; phosp 97.6 3.9E-05 1.3E-09 55.4 3.3 25 2-26 2-26 (173)
282 1nks_A Adenylate kinase; therm 97.6 3.5E-05 1.2E-09 56.4 3.0 24 4-27 3-26 (194)
283 1f6b_A SAR1; gtpases, N-termin 97.6 3.5E-05 1.2E-09 57.2 3.0 21 4-24 27-47 (198)
284 1lv7_A FTSH; alpha/beta domain 97.6 3.4E-05 1.2E-09 59.6 3.0 23 5-27 48-70 (257)
285 4fcw_A Chaperone protein CLPB; 97.6 4.5E-05 1.6E-09 60.2 3.8 34 3-36 48-81 (311)
286 3auy_A DNA double-strand break 97.6 3.4E-05 1.2E-09 63.2 3.0 21 3-23 26-46 (371)
287 2z0h_A DTMP kinase, thymidylat 97.5 4.7E-05 1.6E-09 56.0 3.3 24 4-27 2-25 (197)
288 2ga8_A Hypothetical 39.9 kDa p 97.5 3.8E-05 1.3E-09 62.9 3.1 26 2-27 22-49 (359)
289 1xwi_A SKD1 protein; VPS4B, AA 97.5 0.00045 1.5E-08 55.5 9.1 23 4-26 47-69 (322)
290 2cdn_A Adenylate kinase; phosp 97.5 5.7E-05 2E-09 56.1 3.6 25 2-26 20-44 (201)
291 4b4t_H 26S protease regulatory 97.5 0.00049 1.7E-08 58.2 9.6 23 5-27 246-268 (467)
292 4b4t_L 26S protease subunit RP 97.5 0.00043 1.5E-08 58.1 9.1 23 5-27 218-240 (437)
293 1aky_A Adenylate kinase; ATP:A 97.5 6.2E-05 2.1E-09 56.8 3.7 25 2-26 4-28 (220)
294 3d8b_A Fidgetin-like protein 1 97.5 0.00057 1.9E-08 55.6 9.6 24 3-26 118-141 (357)
295 1zd8_A GTP:AMP phosphotransfer 97.5 5.5E-05 1.9E-09 57.4 3.1 25 2-26 7-31 (227)
296 3fb4_A Adenylate kinase; psych 97.5 6.1E-05 2.1E-09 56.5 3.3 23 4-26 2-24 (216)
297 2pbr_A DTMP kinase, thymidylat 97.5 6.2E-05 2.1E-09 55.1 3.3 24 4-27 2-25 (195)
298 4b4t_K 26S protease regulatory 97.5 0.00075 2.6E-08 56.5 10.2 23 5-27 209-231 (428)
299 1zuh_A Shikimate kinase; alpha 97.5 6.8E-05 2.3E-09 54.1 3.4 24 3-26 8-31 (168)
300 3cf0_A Transitional endoplasmi 97.5 8.2E-05 2.8E-09 59.1 4.0 26 2-27 49-74 (301)
301 1ukz_A Uridylate kinase; trans 97.5 7.8E-05 2.7E-09 55.4 3.7 25 2-26 15-39 (203)
302 1zak_A Adenylate kinase; ATP:A 97.5 5.7E-05 1.9E-09 57.1 2.8 25 2-26 5-29 (222)
303 3dl0_A Adenylate kinase; phosp 97.4 7.2E-05 2.5E-09 56.2 3.3 23 4-26 2-24 (216)
304 3a4m_A L-seryl-tRNA(SEC) kinas 97.4 8.6E-05 2.9E-09 57.8 3.8 25 2-26 4-28 (260)
305 2pt5_A Shikimate kinase, SK; a 97.4 8.2E-05 2.8E-09 53.4 3.4 23 4-26 2-24 (168)
306 2ged_A SR-beta, signal recogni 97.4 7E-05 2.4E-09 54.7 3.0 24 4-27 50-73 (193)
307 2q6t_A DNAB replication FORK h 97.4 0.0013 4.4E-08 55.1 11.1 28 1-28 199-226 (444)
308 3b1v_A Ferrous iron uptake tra 97.4 7.9E-05 2.7E-09 58.7 3.4 23 4-26 5-27 (272)
309 3pvs_A Replication-associated 97.4 0.0006 2.1E-08 57.4 8.9 25 4-28 52-76 (447)
310 3umf_A Adenylate kinase; rossm 97.4 9.8E-05 3.4E-09 56.4 3.8 25 2-26 29-53 (217)
311 4b4t_I 26S protease regulatory 97.4 0.00077 2.6E-08 56.5 9.3 23 5-27 219-241 (437)
312 1ypw_A Transitional endoplasmi 97.4 5.1E-05 1.7E-09 68.3 2.3 26 2-27 511-536 (806)
313 1z2a_A RAS-related protein RAB 97.4 8.3E-05 2.9E-09 52.7 3.0 23 4-26 7-29 (168)
314 3ihw_A Centg3; RAS, centaurin, 97.4 0.00013 4.6E-09 53.3 4.0 22 4-25 22-43 (184)
315 1uj2_A Uridine-cytidine kinase 97.4 9.4E-05 3.2E-09 57.2 3.3 24 4-27 24-47 (252)
316 2nzj_A GTP-binding protein REM 97.4 9.9E-05 3.4E-09 52.7 3.2 23 4-26 6-28 (175)
317 2erx_A GTP-binding protein DI- 97.4 0.0001 3.5E-09 52.4 3.2 22 4-25 5-26 (172)
318 2grj_A Dephospho-COA kinase; T 97.4 0.0001 3.6E-09 55.1 3.3 23 3-25 13-35 (192)
319 2dyk_A GTP-binding protein; GT 97.4 9.8E-05 3.3E-09 52.0 3.0 23 4-26 3-25 (161)
320 3tlx_A Adenylate kinase 2; str 97.4 0.00012 4.2E-09 56.4 3.8 25 2-26 29-53 (243)
321 1kao_A RAP2A; GTP-binding prot 97.4 0.0001 3.4E-09 52.1 3.0 22 4-25 5-26 (167)
322 3q72_A GTP-binding protein RAD 97.4 7.5E-05 2.6E-09 53.0 2.4 24 4-27 4-27 (166)
323 3llm_A ATP-dependent RNA helic 97.4 0.00011 3.9E-09 56.1 3.5 23 2-24 76-98 (235)
324 1fzq_A ADP-ribosylation factor 97.4 7.5E-05 2.6E-09 54.4 2.4 22 4-25 18-39 (181)
325 2xb4_A Adenylate kinase; ATP-b 97.4 0.00011 3.8E-09 55.8 3.4 23 4-26 2-24 (223)
326 1u8z_A RAS-related protein RAL 97.4 0.0001 3.5E-09 52.0 3.0 23 4-26 6-28 (168)
327 3ice_A Transcription terminati 97.4 7E-05 2.4E-09 62.2 2.3 27 1-27 173-199 (422)
328 3q85_A GTP-binding protein REM 97.3 0.00011 3.8E-09 52.3 3.1 23 4-26 4-26 (169)
329 2ce2_X GTPase HRAS; signaling 97.3 9E-05 3.1E-09 52.1 2.6 23 4-26 5-27 (166)
330 1z0j_A RAB-22, RAS-related pro 97.3 0.00011 3.7E-09 52.2 3.0 23 4-26 8-30 (170)
331 1ltq_A Polynucleotide kinase; 97.3 0.00013 4.5E-09 57.5 3.8 23 2-24 2-24 (301)
332 3tw8_B RAS-related protein RAB 97.3 9.8E-05 3.3E-09 53.0 2.8 23 4-26 11-33 (181)
333 3cmw_A Protein RECA, recombina 97.3 0.00042 1.4E-08 66.6 7.7 35 1-35 731-765 (1706)
334 2e87_A Hypothetical protein PH 97.3 9.6E-05 3.3E-09 60.2 3.0 24 3-26 168-191 (357)
335 1ek0_A Protein (GTP-binding pr 97.3 0.00011 3.9E-09 52.0 3.0 23 4-26 5-27 (170)
336 1z08_A RAS-related protein RAB 97.3 0.00012 4E-09 52.1 3.0 22 4-25 8-29 (170)
337 4b4t_M 26S protease regulatory 97.3 0.0007 2.4E-08 56.8 8.2 23 5-27 218-240 (434)
338 1c1y_A RAS-related protein RAP 97.3 0.00012 4E-09 51.9 3.0 22 4-25 5-26 (167)
339 1wms_A RAB-9, RAB9, RAS-relate 97.3 0.00012 4.1E-09 52.5 3.0 23 4-26 9-31 (177)
340 1ky3_A GTP-binding protein YPT 97.3 0.00012 4.1E-09 52.5 3.0 23 4-26 10-32 (182)
341 3lxw_A GTPase IMAP family memb 97.3 0.00012 4.1E-09 56.6 3.2 24 4-27 23-46 (247)
342 2lkc_A Translation initiation 97.3 0.00015 5.1E-09 52.0 3.4 23 3-25 9-31 (178)
343 1g16_A RAS-related protein SEC 97.3 0.00011 3.7E-09 52.2 2.6 23 4-26 5-27 (170)
344 3t1o_A Gliding protein MGLA; G 97.3 0.00015 5.2E-09 52.7 3.4 25 4-28 16-40 (198)
345 1svi_A GTP-binding protein YSX 97.3 0.00011 3.7E-09 53.7 2.5 23 4-26 25-47 (195)
346 1moz_A ARL1, ADP-ribosylation 97.3 7.5E-05 2.6E-09 53.9 1.6 21 4-24 20-40 (183)
347 3sr0_A Adenylate kinase; phosp 97.3 0.00016 5.3E-09 54.7 3.3 23 4-26 2-24 (206)
348 2f6r_A COA synthase, bifunctio 97.3 0.00013 4.4E-09 57.6 3.0 22 3-24 76-97 (281)
349 2fn4_A P23, RAS-related protei 97.3 0.00012 4.2E-09 52.4 2.7 22 4-25 11-32 (181)
350 3pqc_A Probable GTP-binding pr 97.3 0.00012 4E-09 53.3 2.5 23 4-26 25-47 (195)
351 4dsu_A GTPase KRAS, isoform 2B 97.3 0.00014 4.9E-09 52.5 3.0 23 4-26 6-28 (189)
352 3clv_A RAB5 protein, putative; 97.3 0.00014 4.9E-09 52.9 3.0 23 4-26 9-31 (208)
353 1a7j_A Phosphoribulokinase; tr 97.3 7.5E-05 2.6E-09 59.3 1.6 26 2-27 5-30 (290)
354 1r2q_A RAS-related protein RAB 97.3 0.00015 5E-09 51.4 3.0 22 4-25 8-29 (170)
355 3be4_A Adenylate kinase; malar 97.3 0.00014 4.7E-09 54.9 3.0 25 2-26 5-29 (217)
356 1wf3_A GTP-binding protein; GT 97.3 0.00015 5.3E-09 57.8 3.4 22 4-25 9-30 (301)
357 2cxx_A Probable GTP-binding pr 97.3 0.00012 4.2E-09 53.1 2.5 23 4-26 3-25 (190)
358 2hxs_A RAB-26, RAS-related pro 97.3 0.00017 5.7E-09 51.8 3.2 23 4-26 8-30 (178)
359 2oil_A CATX-8, RAS-related pro 97.3 0.00015 5.2E-09 53.0 3.0 23 4-26 27-49 (193)
360 1e4v_A Adenylate kinase; trans 97.2 0.00015 5.1E-09 54.5 3.0 23 4-26 2-24 (214)
361 1upt_A ARL1, ADP-ribosylation 97.2 0.00016 5.5E-09 51.4 3.0 22 4-25 9-30 (171)
362 3bc1_A RAS-related protein RAB 97.2 0.00016 5.4E-09 52.4 3.0 22 4-25 13-34 (195)
363 3iev_A GTP-binding protein ERA 97.2 0.00017 6E-09 57.5 3.4 23 4-26 12-34 (308)
364 2dby_A GTP-binding protein; GD 97.2 0.00015 5E-09 59.7 3.0 22 4-25 3-24 (368)
365 1r8s_A ADP-ribosylation factor 97.2 0.00017 5.9E-09 51.0 3.0 21 5-25 3-23 (164)
366 2h92_A Cytidylate kinase; ross 97.2 0.00015 5.3E-09 54.4 2.9 25 2-26 3-27 (219)
367 3iby_A Ferrous iron transport 97.2 0.00016 5.5E-09 56.3 3.0 23 4-26 3-25 (256)
368 3con_A GTPase NRAS; structural 97.2 0.00017 5.9E-09 52.5 3.0 23 4-26 23-45 (190)
369 1ak2_A Adenylate kinase isoenz 97.2 0.00022 7.5E-09 54.4 3.7 25 2-26 16-40 (233)
370 1z0f_A RAB14, member RAS oncog 97.2 0.00018 6.1E-09 51.5 3.0 23 4-26 17-39 (179)
371 2a9k_A RAS-related protein RAL 97.2 0.00018 6.2E-09 51.8 3.0 23 4-26 20-42 (187)
372 2g6b_A RAS-related protein RAB 97.2 0.00019 6.4E-09 51.6 3.0 23 4-26 12-34 (180)
373 2y8e_A RAB-protein 6, GH09086P 97.2 0.00016 5.6E-09 51.7 2.6 22 4-25 16-37 (179)
374 3crm_A TRNA delta(2)-isopenten 97.2 0.00023 7.8E-09 57.6 3.6 26 2-27 5-30 (323)
375 4hlc_A DTMP kinase, thymidylat 97.2 0.00024 8.4E-09 53.6 3.6 27 1-27 1-27 (205)
376 3cmu_A Protein RECA, recombina 97.2 0.0025 8.6E-08 62.2 11.3 36 1-36 1426-1461(2050)
377 1sky_E F1-ATPase, F1-ATP synth 97.2 0.00015 5.1E-09 61.4 2.6 35 1-35 150-184 (473)
378 1nrj_B SR-beta, signal recogni 97.2 0.0002 6.8E-09 53.4 3.0 23 4-26 14-36 (218)
379 2efe_B Small GTP-binding prote 97.2 0.00021 7.3E-09 51.3 3.0 23 4-26 14-36 (181)
380 3io5_A Recombination and repai 97.2 0.0013 4.5E-08 53.1 7.8 25 2-27 29-54 (333)
381 3cbq_A GTP-binding protein REM 97.2 0.00016 5.6E-09 53.4 2.4 22 4-25 25-46 (195)
382 1vg8_A RAS-related protein RAB 97.2 0.00022 7.6E-09 52.5 3.0 23 4-26 10-32 (207)
383 3a1s_A Iron(II) transport prot 97.2 0.00022 7.7E-09 55.5 3.2 23 4-26 7-29 (258)
384 2bov_A RAla, RAS-related prote 97.1 0.00022 7.5E-09 52.4 3.0 22 4-25 16-37 (206)
385 2wsm_A Hydrogenase expression/ 97.1 0.00021 7.1E-09 53.5 2.9 23 4-26 32-54 (221)
386 2bme_A RAB4A, RAS-related prot 97.1 0.00019 6.6E-09 51.9 2.6 23 4-26 12-34 (186)
387 3d3q_A TRNA delta(2)-isopenten 97.1 0.00022 7.5E-09 58.0 3.2 25 3-27 8-32 (340)
388 2v3c_C SRP54, signal recogniti 97.1 0.00013 4.4E-09 61.3 1.8 39 3-41 100-138 (432)
389 2gf9_A RAS-related protein RAB 97.1 0.00023 7.7E-09 51.9 3.0 23 4-26 24-46 (189)
390 1ksh_A ARF-like protein 2; sma 97.1 0.00022 7.6E-09 51.7 2.9 23 4-26 20-42 (186)
391 3kkq_A RAS-related protein M-R 97.1 0.00023 8E-09 51.3 3.0 22 4-25 20-41 (183)
392 4edh_A DTMP kinase, thymidylat 97.1 0.00037 1.3E-08 52.9 4.2 28 1-28 5-32 (213)
393 3tkl_A RAS-related protein RAB 97.1 0.00023 8E-09 51.9 3.0 23 4-26 18-40 (196)
394 3a8t_A Adenylate isopentenyltr 97.1 0.00033 1.1E-08 57.0 4.1 26 2-27 40-65 (339)
395 2xtp_A GTPase IMAP family memb 97.1 0.00023 7.9E-09 54.9 3.0 23 4-26 24-46 (260)
396 1m7b_A RND3/RHOE small GTP-bin 97.1 0.00021 7.1E-09 52.0 2.6 22 4-25 9-30 (184)
397 3t5d_A Septin-7; GTP-binding p 97.1 0.00018 6.2E-09 56.3 2.4 23 4-26 10-32 (274)
398 2gf0_A GTP-binding protein DI- 97.1 0.00021 7.2E-09 52.2 2.7 22 4-25 10-31 (199)
399 3i8s_A Ferrous iron transport 97.1 0.00021 7.3E-09 56.0 2.8 23 4-26 5-27 (274)
400 3p32_A Probable GTPase RV1496/ 97.1 0.0003 1E-08 57.3 3.8 39 3-41 80-118 (355)
401 3v9p_A DTMP kinase, thymidylat 97.1 0.00023 7.7E-09 54.7 2.8 28 1-28 24-51 (227)
402 3lv8_A DTMP kinase, thymidylat 97.1 0.00026 9.1E-09 54.7 3.2 28 1-28 26-53 (236)
403 1mh1_A RAC1; GTP-binding, GTPa 97.1 0.00025 8.6E-09 51.1 3.0 22 4-25 7-28 (186)
404 3zvl_A Bifunctional polynucleo 97.1 0.00027 9.1E-09 58.9 3.4 25 2-26 258-282 (416)
405 2fg5_A RAB-22B, RAS-related pr 97.1 0.00022 7.6E-09 52.2 2.7 23 4-26 25-47 (192)
406 1zbd_A Rabphilin-3A; G protein 97.1 0.00028 9.7E-09 51.9 3.1 23 4-26 10-32 (203)
407 3exa_A TRNA delta(2)-isopenten 97.1 0.00034 1.2E-08 56.4 3.8 27 1-27 2-28 (322)
408 1z06_A RAS-related protein RAB 97.1 0.00028 9.6E-09 51.4 3.0 22 4-25 22-43 (189)
409 1jbk_A CLPB protein; beta barr 97.1 0.00037 1.3E-08 50.1 3.6 25 3-27 44-68 (195)
410 2cjw_A GTP-binding protein GEM 97.1 0.00028 9.7E-09 52.0 3.0 22 4-25 8-29 (192)
411 3oes_A GTPase rhebl1; small GT 97.1 0.00025 8.4E-09 52.4 2.6 23 4-26 26-48 (201)
412 2il1_A RAB12; G-protein, GDP, 97.1 0.00026 9E-09 51.9 2.7 23 4-26 28-50 (192)
413 2a5j_A RAS-related protein RAB 97.1 0.0003 1E-08 51.5 3.0 23 4-26 23-45 (191)
414 4tmk_A Protein (thymidylate ki 97.1 0.00033 1.1E-08 53.2 3.3 28 1-28 2-29 (213)
415 3t5g_A GTP-binding protein RHE 97.1 0.00026 8.8E-09 51.0 2.6 21 4-24 8-28 (181)
416 3cnl_A YLQF, putative uncharac 97.1 0.00032 1.1E-08 54.9 3.3 28 4-31 101-128 (262)
417 3bwd_D RAC-like GTP-binding pr 97.1 0.00031 1.1E-08 50.5 3.0 23 4-26 10-32 (182)
418 3reg_A RHO-like small GTPase; 97.1 0.00031 1E-08 51.4 3.0 23 4-26 25-47 (194)
419 1zd9_A ADP-ribosylation factor 97.1 0.00031 1.1E-08 51.3 3.0 22 4-25 24-45 (188)
420 3cf2_A TER ATPase, transitiona 97.1 0.0026 9E-08 57.2 9.5 23 5-27 241-263 (806)
421 2h57_A ADP-ribosylation factor 97.1 0.00022 7.4E-09 52.1 2.1 23 4-26 23-45 (190)
422 1jwy_B Dynamin A GTPase domain 97.1 0.00029 9.8E-09 55.8 3.0 23 4-26 26-48 (315)
423 3dz8_A RAS-related protein RAB 97.1 0.00027 9.1E-09 51.7 2.6 23 4-26 25-47 (191)
424 1x3s_A RAS-related protein RAB 97.1 0.00031 1.1E-08 51.0 3.0 23 4-26 17-39 (195)
425 2o52_A RAS-related protein RAB 97.0 0.00029 9.8E-09 52.1 2.8 22 4-25 27-48 (200)
426 2atv_A RERG, RAS-like estrogen 97.0 0.00032 1.1E-08 51.5 3.0 22 4-25 30-51 (196)
427 1zj6_A ADP-ribosylation factor 97.0 0.00029 9.9E-09 51.2 2.8 22 4-25 18-39 (187)
428 2ocp_A DGK, deoxyguanosine kin 97.0 0.00036 1.2E-08 53.4 3.4 27 1-27 1-27 (241)
429 2ew1_A RAS-related protein RAB 97.0 0.00027 9.3E-09 52.6 2.6 22 4-25 28-49 (201)
430 2p5s_A RAS and EF-hand domain 97.0 0.00033 1.1E-08 51.6 3.0 23 4-26 30-52 (199)
431 3cph_A RAS-related protein SEC 97.0 0.00033 1.1E-08 51.8 3.0 23 4-26 22-44 (213)
432 4bas_A ADP-ribosylation factor 97.0 0.00031 1.1E-08 51.3 2.8 23 4-26 19-41 (199)
433 3tmk_A Thymidylate kinase; pho 97.0 0.00037 1.3E-08 53.1 3.3 28 1-28 4-31 (216)
434 2qu8_A Putative nucleolar GTP- 97.0 0.00032 1.1E-08 53.0 2.9 23 4-26 31-53 (228)
435 2bcg_Y Protein YP2, GTP-bindin 97.0 0.00029 1E-08 52.0 2.6 23 4-26 10-32 (206)
436 2r8r_A Sensor protein; KDPD, P 97.0 0.00036 1.2E-08 53.6 3.1 38 2-40 5-44 (228)
437 4dhe_A Probable GTP-binding pr 97.0 0.00014 4.8E-09 54.4 0.8 23 4-26 31-53 (223)
438 2f7s_A C25KG, RAS-related prot 97.0 0.00038 1.3E-08 51.8 3.2 23 4-26 27-49 (217)
439 3llu_A RAS-related GTP-binding 97.0 0.00039 1.3E-08 51.1 3.1 24 4-27 22-45 (196)
440 2h17_A ADP-ribosylation factor 97.0 0.00028 9.6E-09 51.1 2.3 22 4-25 23-44 (181)
441 3hu3_A Transitional endoplasmi 97.0 0.0025 8.7E-08 54.1 8.5 23 4-26 240-262 (489)
442 2q3h_A RAS homolog gene family 97.0 0.0004 1.4E-08 51.0 3.1 22 4-25 22-43 (201)
443 2iwr_A Centaurin gamma 1; ANK 97.0 0.00027 9.2E-09 50.8 2.1 22 4-25 9-30 (178)
444 2qmh_A HPR kinase/phosphorylas 97.0 0.00047 1.6E-08 52.1 3.4 24 2-25 34-57 (205)
445 1njg_A DNA polymerase III subu 97.0 0.00042 1.4E-08 51.6 3.2 25 4-28 47-71 (250)
446 3c5c_A RAS-like protein 12; GD 97.0 0.00041 1.4E-08 50.7 3.0 22 4-25 23-44 (187)
447 2fv8_A H6, RHO-related GTP-bin 97.0 0.00036 1.2E-08 51.8 2.7 23 4-26 27-49 (207)
448 2j1l_A RHO-related GTP-binding 97.0 0.00038 1.3E-08 52.1 2.8 22 4-25 36-57 (214)
449 1gwn_A RHO-related GTP-binding 97.0 0.00036 1.2E-08 52.1 2.6 23 4-26 30-52 (205)
450 3cmw_A Protein RECA, recombina 97.0 0.0022 7.5E-08 61.8 8.4 35 1-35 382-416 (1706)
451 3foz_A TRNA delta(2)-isopenten 96.9 0.00055 1.9E-08 55.0 3.8 26 2-27 10-35 (316)
452 2fh5_B SR-beta, signal recogni 96.9 0.00043 1.5E-08 51.4 3.0 23 4-26 9-31 (214)
453 2fu5_C RAS-related protein RAB 96.9 0.00026 8.8E-09 51.1 1.7 22 4-25 10-31 (183)
454 1p5z_B DCK, deoxycytidine kina 96.9 0.00041 1.4E-08 53.8 2.8 26 2-27 24-49 (263)
455 2aka_B Dynamin-1; fusion prote 96.9 0.00036 1.2E-08 54.7 2.5 23 4-26 28-50 (299)
456 3ld9_A DTMP kinase, thymidylat 96.9 0.00061 2.1E-08 52.2 3.7 28 1-28 20-47 (223)
457 2gco_A H9, RHO-related GTP-bin 96.9 0.00041 1.4E-08 51.2 2.6 23 4-26 27-49 (201)
458 3n70_A Transport activator; si 96.9 0.00089 3E-08 47.2 4.2 27 4-30 26-52 (145)
459 2b6h_A ADP-ribosylation factor 96.9 0.00038 1.3E-08 51.2 2.4 22 4-25 31-52 (192)
460 2hf9_A Probable hydrogenase ni 96.9 0.00047 1.6E-08 51.7 2.8 23 4-26 40-62 (226)
461 4dcu_A GTP-binding protein ENG 96.9 0.00043 1.5E-08 58.1 2.8 22 4-25 25-46 (456)
462 3def_A T7I23.11 protein; chlor 96.9 0.00051 1.7E-08 53.3 3.0 23 4-26 38-60 (262)
463 4djt_A GTP-binding nuclear pro 96.9 0.00024 8.4E-09 52.9 1.1 22 4-25 13-34 (218)
464 2orw_A Thymidine kinase; TMTK, 96.9 0.00053 1.8E-08 50.7 2.9 25 1-25 2-27 (184)
465 2atx_A Small GTP binding prote 96.9 0.00048 1.6E-08 50.3 2.7 22 4-25 20-41 (194)
466 2orv_A Thymidine kinase; TP4A 96.9 0.0092 3.2E-07 45.9 9.9 36 98-143 90-125 (234)
467 3te6_A Regulatory protein SIR3 96.9 0.003 1E-07 50.8 7.5 26 2-27 45-70 (318)
468 2p65_A Hypothetical protein PF 96.9 0.0005 1.7E-08 49.4 2.6 26 3-28 44-69 (187)
469 2j9r_A Thymidine kinase; TK1, 96.9 0.0015 5.1E-08 49.7 5.4 35 1-35 27-61 (214)
470 1h65_A Chloroplast outer envel 96.9 0.00053 1.8E-08 53.4 3.0 23 4-26 41-63 (270)
471 3cmu_A Protein RECA, recombina 96.9 0.0033 1.1E-07 61.4 8.9 35 1-35 382-416 (2050)
472 3gmt_A Adenylate kinase; ssgci 96.9 0.0006 2E-08 52.5 3.1 23 4-26 10-32 (230)
473 2g3y_A GTP-binding protein GEM 96.8 0.00063 2.2E-08 51.3 3.2 22 4-25 39-60 (211)
474 1sxj_D Activator 1 41 kDa subu 96.8 0.00056 1.9E-08 54.6 3.0 23 5-27 61-83 (353)
475 1ko7_A HPR kinase/phosphatase; 96.8 0.00071 2.4E-08 54.4 3.5 34 2-35 144-181 (314)
476 2hup_A RAS-related protein RAB 96.8 0.00058 2E-08 50.5 2.7 23 4-26 31-53 (201)
477 3cpj_B GTP-binding protein YPT 96.8 0.00069 2.4E-08 50.9 3.1 23 4-26 15-37 (223)
478 2x77_A ADP-ribosylation factor 96.8 0.0004 1.4E-08 50.5 1.6 21 4-24 24-44 (189)
479 2yc2_C IFT27, small RAB-relate 96.8 0.00026 9E-09 52.0 0.5 22 4-25 22-43 (208)
480 4gzl_A RAS-related C3 botulinu 96.8 0.00063 2.1E-08 50.5 2.6 21 4-24 32-52 (204)
481 3q3j_B RHO-related GTP-binding 96.7 0.00077 2.6E-08 50.4 3.0 22 4-25 29-50 (214)
482 2j0v_A RAC-like GTP-binding pr 96.7 0.00076 2.6E-08 50.0 2.6 22 4-25 11-32 (212)
483 3tqf_A HPR(Ser) kinase; transf 96.7 0.001 3.5E-08 49.2 3.1 23 2-24 16-38 (181)
484 1q57_A DNA primase/helicase; d 96.7 0.01 3.4E-07 50.3 9.7 26 1-26 241-266 (503)
485 2r62_A Cell division protease 96.7 0.00042 1.4E-08 53.6 0.9 22 5-26 47-68 (268)
486 2chg_A Replication factor C sm 96.6 0.0011 3.7E-08 48.8 3.1 23 4-26 40-62 (226)
487 2i1q_A DNA repair and recombin 96.6 0.0011 3.8E-08 52.9 3.3 24 1-24 97-120 (322)
488 3uk6_A RUVB-like 2; hexameric 96.6 0.0013 4.4E-08 53.0 3.6 36 2-37 70-105 (368)
489 1wxq_A GTP-binding protein; st 96.6 0.00094 3.2E-08 55.3 2.8 23 4-26 2-24 (397)
490 3bgw_A DNAB-like replicative h 96.6 0.0054 1.9E-07 51.4 7.2 26 1-26 196-221 (444)
491 2hjg_A GTP-binding protein ENG 96.6 0.0011 3.7E-08 55.4 2.9 22 4-25 5-26 (436)
492 1puj_A YLQF, conserved hypothe 96.5 0.0017 5.7E-08 51.3 3.8 24 4-27 122-145 (282)
493 3pxi_A Negative regulator of g 96.5 0.0056 1.9E-07 54.5 7.6 24 4-27 523-546 (758)
494 1x6v_B Bifunctional 3'-phospho 96.5 0.0015 5.1E-08 57.2 3.7 25 2-26 52-76 (630)
495 2zts_A Putative uncharacterize 96.5 0.0018 6E-08 49.0 3.6 23 1-23 29-51 (251)
496 3eph_A TRNA isopentenyltransfe 96.5 0.0013 4.5E-08 54.7 3.0 24 3-26 3-26 (409)
497 3r7w_A Gtpase1, GTP-binding pr 96.5 0.0019 6.5E-08 51.4 3.8 23 3-25 4-26 (307)
498 3t15_A Ribulose bisphosphate c 96.5 0.0014 4.8E-08 51.8 2.9 23 4-26 38-60 (293)
499 3gj0_A GTP-binding nuclear pro 96.5 0.00096 3.3E-08 49.9 1.8 22 4-25 17-39 (221)
500 1d2n_A N-ethylmaleimide-sensit 96.5 0.0016 5.4E-08 50.5 3.1 23 4-26 66-88 (272)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.9e-34 Score=236.82 Aligned_cols=161 Identities=12% Similarity=0.132 Sum_probs=125.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCC-------CCccCCcchhcc-----
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFD-------YPVAMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~-------~~~~~~~~~~~~----- 58 (175)
+||++||+||||||||||+|+|+|+++|++|+|.++|.++.. +.++ +.+.+++.+++.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~ 132 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 132 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh
Confidence 599999999999999999999999999999999999976421 1222 333345555442
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030549 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..|+||..+||+++. +|++|+||||+...+......+.++|++++
T Consensus 133 ~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~--~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~ 210 (366)
T 3tui_C 133 DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS--NPKVLLCDQATSALDPATTRSILELLKDIN 210 (366)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTT--CCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 2356677777543322222234459999999999999 999999999966666667778888999986
Q ss_pred h-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030549 128 S-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+ .|.|| +++||+++++..+||++++|..|..+.+++
T Consensus 211 ~~~g~Ti----i~vTHdl~~~~~~aDrv~vl~~G~iv~~g~ 247 (366)
T 3tui_C 211 RRLGLTI----LLITHEMDVVKRICDCVAVISNGELIEQDT 247 (366)
T ss_dssp HHSCCEE----EEEESCHHHHHHHCSEEEEEETTEEEECCB
T ss_pred HhCCCEE----EEEecCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 4 59999 999999999999999999999988765543
No 2
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.5e-34 Score=229.75 Aligned_cols=159 Identities=11% Similarity=0.083 Sum_probs=122.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc---------cccCCCCc--------cCCcchhcc-----
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDYPV--------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~---------~~~~~~~~--------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+.+++.+ ..++.+++.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~ 112 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVN 112 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHH
Confidence 59999999999999999999999999999999999998652 11233332 223333321
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030549 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..|+||..+|++++. +|++||||||+...+......+.+++++++
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~--~P~lLlLDEPts~LD~~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 113 MKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM--EPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190 (275)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTT--CCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 2345666666543322222234459999999999999 999999999977666777778888999986
Q ss_pred -hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030549 128 -SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 128 -~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
++|.|| +++||+++++..+||++++|..|..+.+
T Consensus 191 ~~~g~tv----i~vtHdl~~~~~~~drv~~l~~G~i~~~ 225 (275)
T 3gfo_A 191 KELGITI----IIATHDIDIVPLYCDNVFVMKEGRVILQ 225 (275)
T ss_dssp HHHCCEE----EEEESCCSSGGGGCSEEEEEETTEEEEE
T ss_pred hhCCCEE----EEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 569999 9999999999999999999998876543
No 3
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=9.7e-34 Score=220.14 Aligned_cols=158 Identities=16% Similarity=0.061 Sum_probs=121.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCCCC-------ccCCcchhcc----
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYP-------VAMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~-------~~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++. +.+++.+++.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~ 108 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPML 108 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHH
Confidence 599999999999999999999999999999999999876421 122222 2234444332
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030549 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..|+||..+++++.. +|++++||||+...+......+.++++++
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~~~~~l~~l 186 (224)
T 2pcj_A 109 KMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALAN--EPILLFADEPTGNLDSANTKRVMDIFLKI 186 (224)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTT--CCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 1345666776544333332234459999999999999 99999999996666677777888899999
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030549 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+++|.|| +++||+++++ .+||+++++..|..+.+
T Consensus 187 ~~~g~tv----i~vtHd~~~~-~~~d~v~~l~~G~i~~~ 220 (224)
T 2pcj_A 187 NEGGTSI----VMVTHERELA-ELTHRTLEMKDGKVVGE 220 (224)
T ss_dssp HHTTCEE----EEECSCHHHH-TTSSEEEEEETTEEEEE
T ss_pred HHCCCEE----EEEcCCHHHH-HhCCEEEEEECCEEEEE
Confidence 7779999 9999999987 89999999998876543
No 4
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-33 Score=223.41 Aligned_cols=158 Identities=16% Similarity=0.095 Sum_probs=121.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------ccCC-------CCccCCcchhcc---------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFD-------YPVAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~-------~~~~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.++ +.+.+++.+++.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~ 119 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS 119 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 599999999999999999999999999999999999876421 1122 223334444432
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCC
Q 030549 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
..++++.+++..........-+..|+||..++++++. +|++++||||+...+...+..+.++|++++++|.
T Consensus 120 ~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~ 197 (256)
T 1vpl_A 120 SSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMV--NPRLAILDEPTSGLDVLNAREVRKILKQASQEGL 197 (256)
T ss_dssp HHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCC
Confidence 1234556666533222222233459999999999999 9999999999766667777788889999977799
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030549 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
|| +++||+++++..+||+++++..|..+.
T Consensus 198 ti----iivtHd~~~~~~~~d~v~~l~~G~i~~ 226 (256)
T 1vpl_A 198 TI----LVSSHNMLEVEFLCDRIALIHNGTIVE 226 (256)
T ss_dssp EE----EEEECCHHHHTTTCSEEEEEETTEEEE
T ss_pred EE----EEEcCCHHHHHHHCCEEEEEECCEEEE
Confidence 99 999999999999999999998887653
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=8.8e-34 Score=235.16 Aligned_cols=158 Identities=16% Similarity=0.084 Sum_probs=123.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-----c-------ccCCCCccCCcchhcc----------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----A-------ENFDYPVAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----~-------~~~~~~~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|+++. . ++..+.+.+++.+++.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~ 107 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK 107 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCH
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCH
Confidence 59999999999999999999999999999999999997642 1 2233444556665553
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CC
Q 030549 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
..++++.+++..........-+..|+||.+|+|++.. +|++|+||||....+...+..+.+.|++++++ |.
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~--~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~ 185 (381)
T 3rlf_A 108 EVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA--EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185 (381)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHH--CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCC
Confidence 2345666666543322222234459999999999999 99999999996666666677788899998654 99
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030549 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
|+ +++||+++++..+||++++|..|..+-
T Consensus 186 ti----i~vTHd~~ea~~~aDri~vl~~G~i~~ 214 (381)
T 3rlf_A 186 TM----IYVTHDQVEAMTLADKIVVLDAGRVAQ 214 (381)
T ss_dssp EE----EEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred EE----EEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99 999999999999999999999887653
No 6
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.4e-33 Score=220.78 Aligned_cols=158 Identities=13% Similarity=0.047 Sum_probs=118.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCC-------CCccCCcchhcc----
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFD-------YPVAMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~-------~~~~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.++ +.+.+++.+++.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~ 109 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLI 109 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHH
Confidence 599999999999999999999999999999999999975421 1122 223334444331
Q ss_pred ---------------HHHHHHHhCCCCCC-chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030549 59 ---------------LEDVMEELGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..++++.+++.... ......-+..|+||..++++++. +|+++|||||+...+......+.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~--~p~llllDEPts~LD~~~~~~i~~~ 187 (235)
T 3tif_A 110 FKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALAN--NPPIILADQPTWALDSKTGEKIMQL 187 (235)
T ss_dssp TCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred hhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHH
Confidence 12455556664321 11222223459999999999999 9999999999666667777788889
Q ss_pred HHHHHhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030549 123 VDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 123 l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+++++++ |.|| +++||+++. ..+||++++|+.|..+..
T Consensus 188 l~~l~~~~g~tv----i~vtHd~~~-~~~~d~i~~l~~G~i~~~ 226 (235)
T 3tif_A 188 LKKLNEEDGKTV----VVVTHDINV-ARFGERIIYLKDGEVERE 226 (235)
T ss_dssp HHHHHHHHCCEE----EEECSCHHH-HTTSSEEEEEETTEEEEE
T ss_pred HHHHHHHcCCEE----EEEcCCHHH-HHhCCEEEEEECCEEEEE
Confidence 9998654 9999 999999985 589999999999876543
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.8e-33 Score=223.56 Aligned_cols=158 Identities=16% Similarity=0.147 Sum_probs=120.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc---------cccCCCC-------ccCCcchhcc------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDYP-------VAMDIRELIS------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~---------~~~~~~~-------~~~~~~~~~~------ 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+.++|. +.+++.+++.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~ 128 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKV 128 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999997642 0112222 2234433321
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030549 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..|+||..++++++. +|++++||||+...+...+..+.+++++++
T Consensus 129 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~--~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 206 (263)
T 2olj_A 129 RKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAM--EPKIMLFDEPTSALDPEMVGEVLSVMKQLA 206 (263)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 1234555665433222222233449999999999999 999999999977666777778888999997
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030549 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
++|.|| +++||+++++..+||+++++..|..+.
T Consensus 207 ~~g~tv----i~vtHd~~~~~~~~d~v~~l~~G~i~~ 239 (263)
T 2olj_A 207 NEGMTM----VVVTHEMGFAREVGDRVLFMDGGYIIE 239 (263)
T ss_dssp HTTCEE----EEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred hCCCEE----EEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 779999 999999999999999999999887654
No 8
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-33 Score=224.35 Aligned_cols=158 Identities=15% Similarity=0.123 Sum_probs=120.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc--------------------cccCCCC-------ccCCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------------------AENFDYP-------VAMDI 53 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~--------------------~~~~~~~-------~~~~~ 53 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+.+++. +.+++
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv 110 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 110 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcH
Confidence 59999999999999999999999999999999999987643 0112222 22344
Q ss_pred chhcc-----------------HHHHHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCccccccc
Q 030549 54 RELIS-----------------LEDVMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTH 115 (175)
Q Consensus 54 ~~~~~-----------------~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~ 115 (175)
.+++. ..++++.+++... .......-+..|+||..++++++. +|++++||||+...+...
T Consensus 111 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~ 188 (262)
T 1b0u_A 111 LENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAM--EPDVLLFDEPTSALDPEL 188 (262)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTSCHHH
T ss_pred HHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHH
Confidence 33332 1234555555432 111222223448999999999999 999999999976666777
Q ss_pred chHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030549 116 VPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 116 ~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
+..+.+++++++++|.|| +++||+++++..+||+++++..|..+.
T Consensus 189 ~~~~~~~l~~l~~~g~tv----i~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (262)
T 1b0u_A 189 VGEVLRIMQQLAEEGKTM----VVVTHEMGFARHVSSHVIFLHQGKIEE 233 (262)
T ss_dssp HHHHHHHHHHHHHTTCCE----EEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHhCCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 778888999997779999 999999999999999999999887654
No 9
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.7e-33 Score=231.88 Aligned_cols=158 Identities=15% Similarity=0.092 Sum_probs=118.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc---------cccCCCC-------ccCCcchhcc------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDYP-------VAMDIRELIS------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~---------~~~~~~~-------~~~~~~~~~~------ 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|+++. .+.+++. +.+++.+++.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~ 108 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG 108 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc
Confidence 59999999999999999999999999999999999987641 1223333 3334443331
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH-H
Q 030549 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL-K 127 (175)
Q Consensus 59 ----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l-~ 127 (175)
..++++.+++..........-+..|+||.+|+|+++. +|++|+||||....+...+..+++.++++ +
T Consensus 109 ~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~--~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~ 186 (359)
T 3fvq_A 109 KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAP--DPELILLDEPFSALDEQLRRQIREDMIAALR 186 (359)
T ss_dssp SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 2345566666543322222223449999999999999 99999999996665566666777666665 5
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030549 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
+.|.|+ +++||+++++..+||++++|..|..+-
T Consensus 187 ~~g~tv----i~vTHd~~ea~~~aDri~vl~~G~i~~ 219 (359)
T 3fvq_A 187 ANGKSA----VFVSHDREEALQYADRIAVMKQGRILQ 219 (359)
T ss_dssp HTTCEE----EEECCCHHHHHHHCSEEEEEETTEEEE
T ss_pred hCCCEE----EEEeCCHHHHHHHCCEEEEEECCEEEE
Confidence 679999 999999999999999999999887654
No 10
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.8e-33 Score=221.60 Aligned_cols=158 Identities=17% Similarity=0.060 Sum_probs=117.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCcc-------CCcchhc--------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPVA-------MDIRELI-------- 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~~-------~~~~~~~-------- 57 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+. +++.+++
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~ 111 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPG 111 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhc
Confidence 599999999999999999999999999999999999876421 12333321 1111110
Q ss_pred ---------------------cHHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccc
Q 030549 58 ---------------------SLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHV 116 (175)
Q Consensus 58 ---------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~ 116 (175)
...++++.+++..........-+..|+||..++++++. +|++++||||+...+....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~--~p~lllLDEPts~LD~~~~ 189 (257)
T 1g6h_A 112 ESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMT--NPKMIVMDEPIAGVAPGLA 189 (257)
T ss_dssp SCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTCCHHHH
T ss_pred cCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHH
Confidence 01234444554332222222223348999999999999 9999999999777667777
Q ss_pred hHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030549 117 PVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 117 ~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
..+.+++++++++|.|| +++||+++++..+||+++++..|..+.
T Consensus 190 ~~l~~~l~~l~~~g~tv----i~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 190 HDIFNHVLELKAKGITF----LIIEHRLDIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp HHHHHHHHHHHHTTCEE----EEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHCCCEE----EEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 88888999987779999 999999999999999999998876553
No 11
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.8e-33 Score=222.70 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=122.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------------ccCCCCccCCcchhcc--------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------------~~~~~~~~~~~~~~~~-------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +...+.+.+++.+++.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 115 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGG 115 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCc
Confidence 599999999999999999999999999999999999976432 1112223334444331
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccC----CCCEEEEeCCCcccccccchHHHHHHHHHHh
Q 030549 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYL----DDDYLVFDCPGQIELFTHVPVLRNFVDHLKS 128 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~ 128 (175)
..++++.+++..........-+..|+||..++++++... +|++||||||+...+......+.++++++++
T Consensus 116 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~ 195 (266)
T 4g1u_C 116 SQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR 195 (266)
T ss_dssp TTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHH
Confidence 345677777765433333223445999999999988522 8999999999666666677788889999865
Q ss_pred C-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030549 129 R-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 129 ~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+ +.|| +++||+++++..+||++++|..|..+.+
T Consensus 196 ~~~~tv----i~vtHdl~~~~~~~d~v~vl~~G~i~~~ 229 (266)
T 4g1u_C 196 QEPLAV----CCVLHDLNLAALYADRIMLLAQGKLVAC 229 (266)
T ss_dssp HSSEEE----EEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred cCCCEE----EEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence 5 5799 9999999999999999999998876644
No 12
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2e-33 Score=220.46 Aligned_cols=158 Identities=14% Similarity=0.074 Sum_probs=116.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCc-------cCCcchhcc-------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++|.+ .+++.+++.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~ 110 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK 110 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCC
Confidence 599999999999999999999999999999999999976421 1133332 222222211
Q ss_pred --------HHHHHHHh-CCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC
Q 030549 59 --------LEDVMEEL-GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 --------~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
..++++.+ ++..........-+..|+||..+++++.. +|++++||||+...+......+.+++++++++
T Consensus 111 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~ 188 (240)
T 1ji0_A 111 DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS--RPKLLMMDEPSLGLAPILVSEVFEVIQKINQE 188 (240)
T ss_dssp CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTT--CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC
Confidence 12233333 23222111111123348999999999999 99999999997776677778888899998777
Q ss_pred CCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030549 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
|.|| +++||+++++..+||+++++..|..+.
T Consensus 189 g~tv----i~vtHd~~~~~~~~d~v~~l~~G~i~~ 219 (240)
T 1ji0_A 189 GTTI----LLVEQNALGALKVAHYGYVLETGQIVL 219 (240)
T ss_dssp TCCE----EEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCEE----EEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999 999999999999999999998876653
No 13
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=3.6e-33 Score=219.08 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=119.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-----cccCCCCc-------cCCcchhcc------------
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDYPV-------AMDIRELIS------------ 58 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----~~~~~~~~-------~~~~~~~~~------------ 58 (175)
|+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+.++|.+ .+++.+++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~ 104 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERD 104 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHH
Confidence 799999999999999999999999999999999997642 12233333 223333221
Q ss_pred --HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCCcEEE
Q 030549 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCA 135 (175)
Q Consensus 59 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvli 135 (175)
..++++.+++..........-+..|+||..++++++. +|++++||||+...+...+..+.++++++++ +|.||
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~--~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tv-- 180 (240)
T 2onk_A 105 RRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI--QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPI-- 180 (240)
T ss_dssp HHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTT--CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCE--
T ss_pred HHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE--
Confidence 1345555666543322222234459999999999999 9999999999776667777788889999865 48999
Q ss_pred EEeeeccchhhhhcCCCceeEeccchhhH
Q 030549 136 VYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 136 ~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
+++||+++++..+||+++++..|..+.
T Consensus 181 --i~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 181 --LHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp --EEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred --EEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999887654
No 14
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=5.3e-33 Score=228.88 Aligned_cols=157 Identities=15% Similarity=0.105 Sum_probs=121.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-----cccC-------CCCccCCcchhcc----------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENF-------DYPVAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----~~~~-------~~~~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+.+ .+.+.+++.+++.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~ 119 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPK 119 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence 59999999999999999999999999999999999987642 1222 2333445555442
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CC
Q 030549 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
..++++.+++..........-+..|+||.+|+|++.. +|++++||||....+...+..+++.|++++++ |.
T Consensus 120 ~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 197 (355)
T 1z47_A 120 DEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAP--RPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV 197 (355)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 1345566666543322222233449999999999999 99999999996666666777888889988654 89
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030549 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|+ +++||+++++..++|++++|..|..+
T Consensus 198 tv----i~vTHd~~~a~~~adri~vl~~G~i~ 225 (355)
T 1z47_A 198 TS----VFVTHDQEEALEVADRVLVLHEGNVE 225 (355)
T ss_dssp EE----EEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred EE----EEECCCHHHHHHhCCEEEEEECCEEE
Confidence 99 99999999999999999999987654
No 15
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=6.4e-33 Score=228.77 Aligned_cols=157 Identities=17% Similarity=0.082 Sum_probs=120.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-----cccCC-------CCccCCcchhcc----------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFD-------YPVAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----~~~~~-------~~~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+.++ +.+.+++.+++.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~ 107 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISK 107 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 59999999999999999999999999999999999987642 12222 233344444331
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCC
Q 030549 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~ 131 (175)
..++++.+++..........-+..|+||.+++|++.. +|++++||||....+...+..+++.++++++ .|.
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 185 (359)
T 2yyz_A 108 DEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK--QPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGI 185 (359)
T ss_dssp HHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 2345666666543322222234459999999999999 9999999999666666677788889998865 489
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030549 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|+ +++||+++++..++|++++|..|..+
T Consensus 186 tv----i~vTHd~~~~~~~adri~vl~~G~i~ 213 (359)
T 2yyz_A 186 TS----VYVTHDQAEAMTMASRIAVFNQGKLV 213 (359)
T ss_dssp EE----EEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred EE----EEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 99 99999999999999999999987654
No 16
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.1e-33 Score=228.37 Aligned_cols=157 Identities=15% Similarity=0.066 Sum_probs=122.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-----cccC-------CCCccCCcchhcc----------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENF-------DYPVAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----~~~~-------~~~~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+.+ .+.+.+++.+++.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~ 107 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPR 107 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCH
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 49999999999999999999999999999999999987642 1222 2334445555442
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCC
Q 030549 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~ 131 (175)
..++++.+++..........-+..|+||.+++|++.. +|++++||||....+...+..+.+.|+++++ .|.
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 185 (362)
T 2it1_A 108 EEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK--EPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI 185 (362)
T ss_dssp HHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCC
Confidence 2345667777654333332234459999999999999 9999999999666666667778888998865 489
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030549 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|+ +++||+++++..++|++++|..|..+
T Consensus 186 tv----i~vTHd~~~a~~~adri~vl~~G~i~ 213 (362)
T 2it1_A 186 TT----VYVTHDQAEALAMADRIAVIREGEIL 213 (362)
T ss_dssp EE----EEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred EE----EEECCCHHHHHHhCCEEEEEECCEEE
Confidence 99 99999999999999999999988654
No 17
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=8.4e-33 Score=227.29 Aligned_cols=158 Identities=14% Similarity=0.099 Sum_probs=123.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-----cccC-------CCCccCCcchhcc----------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENF-------DYPVAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----~~~~-------~~~~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+.+ .+.+.+++.+++.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~ 104 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD 104 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence 59999999999999999999999999999999999997642 1122 3334445555543
Q ss_pred ---HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCCcEE
Q 030549 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVC 134 (175)
Q Consensus 59 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvl 134 (175)
..++++.+++..........-+..|+||.+|+|++.. +|++++||||....+...+..+++.|+++++ .|.|+
T Consensus 105 ~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~--~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~ti- 181 (348)
T 3d31_A 105 PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVT--NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTV- 181 (348)
T ss_dssp HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTS--CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEE-
T ss_pred HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEE-
Confidence 2345667777654333332234459999999999999 9999999999666666677788889999864 58999
Q ss_pred EEEeeeccchhhhhcCCCceeEeccchhhH
Q 030549 135 AVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 135 i~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
+++||+++++..++|++++|..|..+.
T Consensus 182 ---i~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 182 ---LHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp ---EEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred ---EEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999887653
No 18
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.98 E-value=8.4e-33 Score=213.58 Aligned_cols=154 Identities=12% Similarity=0.074 Sum_probs=118.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc--c-------ccCCCCccCCcchhcc-------------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--A-------ENFDYPVAMDIRELIS------------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~--~-------~~~~~~~~~~~~~~~~------------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++. . ++..+.+.+++.+++.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~ 113 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKN 113 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHH
Confidence 59999999999999999999999999999999999987641 1 1222222334443322
Q ss_pred -HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEE
Q 030549 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (175)
Q Consensus 59 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~ 137 (175)
..++++.+++... ......-+..|+||..+++++.. +|++++||||+...+......+.+++++++++|.||
T Consensus 114 ~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~--~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~ti---- 186 (214)
T 1sgw_A 114 EIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLV--NAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV---- 186 (214)
T ss_dssp HHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTS--CCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEE----
T ss_pred HHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEE----
Confidence 2345666776544 22222234459999999999999 999999999977777777888888999987668999
Q ss_pred eeeccchhhhhcCCCceeEeccch
Q 030549 138 LLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 138 l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
+++||+++++..+++++++++...
T Consensus 187 iivtHd~~~~~~~~d~v~~~~~~~ 210 (214)
T 1sgw_A 187 IISSREELSYCDVNENLHKYSTKI 210 (214)
T ss_dssp EEEESSCCTTSSEEEEGGGGBC--
T ss_pred EEEeCCHHHHHHhCCEEEEeCCcc
Confidence 999999999999999998887653
No 19
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.98 E-value=8e-33 Score=227.91 Aligned_cols=157 Identities=17% Similarity=0.076 Sum_probs=120.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCC-------CCccCCcchhcc-----
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFD-------YPVAMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~-------~~~~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.++ +.+.+++.+++.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~ 109 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN 109 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHH
Confidence 499999999999999999999999999999999999865421 1222 223334444321
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030549 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..|+||.+++|++.. +|++++||||....+...+..+++.|++++
T Consensus 110 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~--~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 187 (353)
T 1oxx_K 110 MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK--DPSLLLLDEPFSNLDARMRDSARALVKEVQ 187 (353)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCGGGHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 2345566666543322222233449999999999999 999999999977766777888888999986
Q ss_pred h-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030549 128 S-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 128 ~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+ .|.|+ +++||+++++..+||++++|..|..+
T Consensus 188 ~~~g~tv----i~vTHd~~~~~~~adri~vl~~G~i~ 220 (353)
T 1oxx_K 188 SRLGVTL----LVVSHDPADIFAIADRVGVLVKGKLV 220 (353)
T ss_dssp HHHCCEE----EEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 5 48999 99999999999999999999887654
No 20
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.98 E-value=1.4e-32 Score=227.79 Aligned_cols=158 Identities=16% Similarity=0.061 Sum_probs=121.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCC-------CCccCCcchhcc----
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFD-------YPVAMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~-------~~~~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.++ +.+.+++.+++.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 107 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK 107 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 599999999999999999999999999999999999865421 1222 233445554432
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030549 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..|+||.+|+|++.. +|++++||||....+...+..+++.|+++
T Consensus 108 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 185 (372)
T 1g29_1 108 LRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR--KPQVFLMDEPLSNLDAKLRVRMRAELKKL 185 (372)
T ss_dssp HTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT--CCSEEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEECCCCccCCHHHHHHHHHHHHHH
Confidence 1345666666543322222234459999999999999 99999999996666666777888889988
Q ss_pred Hh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030549 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
++ .|.|+ +++||+++++..++|++++|..|..+.
T Consensus 186 ~~~~g~tv----i~vTHd~~~a~~~adri~vl~~G~i~~ 220 (372)
T 1g29_1 186 QRQLGVTT----IYVTHDQVEAMTMGDRIAVMNRGVLQQ 220 (372)
T ss_dssp HHHHTCEE----EEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHhcCCEE----EEECCCHHHHHHhCCEEEEEeCCEEEE
Confidence 65 48999 999999999999999999999876543
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.97 E-value=3.3e-32 Score=216.50 Aligned_cols=158 Identities=19% Similarity=0.100 Sum_probs=120.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc----cccCCCCc--------cCCcchhcc----------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFDYPV--------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~----~~~~~~~~--------~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+.+++.+ ..++.+++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~ 111 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR 111 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHH
Confidence 59999999999999999999999999999999999987642 11222222 123222211
Q ss_pred -----HHHHHHHhCCC--CCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCC
Q 030549 59 -----LEDVMEELGLG--PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 59 -----~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
..++++.+++. .........-+..|+||..++++++. +|++++||||+...+......+.+++++++++|.
T Consensus 112 ~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~ 189 (266)
T 2yz2_A 112 DPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVH--EPDILILDEPLVGLDREGKTDLLRIVEKWKTLGK 189 (266)
T ss_dssp CSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHc--CCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCC
Confidence 23456666665 32222222234458999999999999 9999999999777677778888889999876799
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030549 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
|| +++||+++++..+||+++++..|..+.
T Consensus 190 ti----i~vtHd~~~~~~~~d~v~~l~~G~i~~ 218 (266)
T 2yz2_A 190 TV----ILISHDIETVINHVDRVVVLEKGKKVF 218 (266)
T ss_dssp EE----EEECSCCTTTGGGCSEEEEEETTEEEE
T ss_pred EE----EEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99 999999999999999999998876653
No 22
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.97 E-value=1.1e-32 Score=228.34 Aligned_cols=155 Identities=16% Similarity=0.117 Sum_probs=117.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-----cccCCCC-------ccCCcchhcc----------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDYP-------VAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----~~~~~~~-------~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+.+++. +.+++.+++.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~ 115 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK 115 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCH
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 59999999999999999999999999999999999987642 1223332 2333333321
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-
Q 030549 59 ------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR- 129 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~- 129 (175)
..++++.+++....... ..++| |+||.+|+|++.. +|++++||||....+...+..+++.|++++++
T Consensus 116 ~~~~~~v~~~l~~~~L~~~~~r~--~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 191 (372)
T 1v43_A 116 DEIDKRVRWAAELLQIEELLNRY--PAQLSGGQRQRVAVARAIVV--EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL 191 (372)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSC--TTTCCSSCHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhC
Confidence 12345555554322111 23344 8899999999999 99999999996666666777888899998654
Q ss_pred CCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030549 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|.|+ +++||+++++..++|++++|..|..+
T Consensus 192 g~tv----i~vTHd~~~a~~~adri~vl~~G~i~ 221 (372)
T 1v43_A 192 KVTT----IYVTHDQVEAMTMGDRIAVMNRGQLL 221 (372)
T ss_dssp TCEE----EEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred CCEE----EEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 8999 99999999999999999999987654
No 23
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.97 E-value=3.5e-32 Score=214.52 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=119.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCC-------CccCCcchhcc--------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~-------~~~~~~~~~~~-------- 58 (175)
+||+++|+||||||||||+|+|+|+++|+ |+|.++|.++.. +.++| .+.+++.+++.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 103 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTR 103 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCCc
Confidence 59999999999999999999999999999 999999876421 11222 22233333221
Q ss_pred ---HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCC-------EEEEeCCCcccccccchHHHHHHHHHHh
Q 030549 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDD-------YLVFDCPGQIELFTHVPVLRNFVDHLKS 128 (175)
Q Consensus 59 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~-------lliLDEP~~~~~~~~~~~~~~~l~~l~~ 128 (175)
..++++.+++..........-+..|+||..++++++. +|+ +++||||+...+....+.+.++++++++
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~--~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~ 181 (249)
T 2qi9_C 104 TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ--ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ 181 (249)
T ss_dssp HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHH--HCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHc--CCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence 2345666666433222222233459999999999999 999 9999999777677777888889999876
Q ss_pred CCCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030549 129 RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 129 ~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+|.|| +++||+++++..+||+++++..|..+
T Consensus 182 ~g~tv----iivtHd~~~~~~~~d~v~~l~~G~i~ 212 (249)
T 2qi9_C 182 QGLAI----VMSSHDLNHTLRHAHRAWLLKGGKML 212 (249)
T ss_dssp TTCEE----EEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCEE----EEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 79999 99999999999999999999887654
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.97 E-value=6.9e-32 Score=212.86 Aligned_cols=159 Identities=15% Similarity=0.145 Sum_probs=116.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcc--CccccceeEEeecCccc--------ccCCCCc-------cCCcchhcc-----
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl--~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+ ++|++|+|.++|.++.. ..+++.+ .+++.+++.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 107 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQA 107 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHh
Confidence 5999999999999999999999998 78999999999976421 1233332 123323221
Q ss_pred --------------HHHHHHHhCCC-CCCchhhhH-HHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030549 59 --------------LEDVMEELGLG-PNGGLIYCM-EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 --------------~~~~~~~~~l~-~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..++++.+++. ......... -+..|+||..+++++.. +|++++||||+...+......+.++
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~--~p~lllLDEPts~LD~~~~~~l~~~ 185 (250)
T 2d2e_A 108 KLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL--EPTYAVLDETDSGLDIDALKVVARG 185 (250)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH--CCSEEEEECGGGTTCHHHHHHHHHH
T ss_pred hccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 12344555663 211111111 23349999999999999 9999999999666666777788889
Q ss_pred HHHHHhCCCcEEEEEeeeccchhhhhcC-CCceeEeccchhhHH
Q 030549 123 VDHLKSRNFNVCAVYLLDSQVCIRFRTL-PPCIVCFCCTHTVVQ 165 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~~~~~~~-~~~~~~~~~~~~~~~ 165 (175)
+++++++|.|| +++||+++++..+ ||+++++..|..+..
T Consensus 186 l~~l~~~g~tv----i~vtHd~~~~~~~~~d~v~~l~~G~i~~~ 225 (250)
T 2d2e_A 186 VNAMRGPNFGA----LVITHYQRILNYIQPDKVHVMMDGRVVAT 225 (250)
T ss_dssp HHHHCSTTCEE----EEECSSSGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHhcCCEE----EEEecCHHHHHHhcCCEEEEEECCEEEEE
Confidence 99987678999 9999999999998 599999988876543
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.97 E-value=3.4e-32 Score=217.78 Aligned_cols=161 Identities=13% Similarity=0.155 Sum_probs=118.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc--c-------ccCCCCc---------cCCcchhcc----
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--A-------ENFDYPV---------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~--~-------~~~~~~~---------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++. . +.+++.+ .+++.+++.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~ 125 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAF 125 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC-
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhh
Confidence 59999999999999999999999999999999999997653 1 1222222 112222211
Q ss_pred ----------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030549 59 ----------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 ----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..++++.+++..........-+..|+||..+++++.. +|++++||||+...+...+..+.++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lLlLDEPts~LD~~~~~~l~~~ 203 (279)
T 2ihy_A 126 KSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMG--QPQVLILDEPAAGLDFIARESLLSI 203 (279)
T ss_dssp --------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred hccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCccccCHHHHHHHHHH
Confidence 1234455555432222222223448999999999999 9999999999776667777788889
Q ss_pred HHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030549 123 VDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
|++++++|.||. .+++||+++++..+||+++++..|..+.+
T Consensus 204 l~~l~~~g~tv~--~iivtHd~~~~~~~~d~v~~l~~G~i~~~ 244 (279)
T 2ihy_A 204 LDSLSDSYPTLA--MIYVTHFIEEITANFSKILLLKDGQSIQQ 244 (279)
T ss_dssp HHHHHHHCTTCE--EEEEESCGGGCCTTCCEEEEEETTEEEEE
T ss_pred HHHHHHCCCEEE--EEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 999876677762 15689999999999999999998876543
No 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.97 E-value=7.9e-32 Score=212.24 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=112.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCCCCC-
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNG- 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 72 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ +....+. .++.+++.+....
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~--Q~~~l~~-~tv~enl~~~~~~~ 110 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVL--QDNVLLN-RSIIDNISLANPGM 110 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEEC--SSCCCTT-SBHHHHHTTTCTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEe--CCCcccc-ccHHHHHhccCCCC
Confidence 599999999999999999999999999999999999976532 1233333 1111222 1333333332100
Q ss_pred c-----------------------------hhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030549 73 G-----------------------------LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 73 ~-----------------------------~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
. .....-+..|+||..++++++. +|++++||||+...+......+.+++
T Consensus 111 ~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~--~p~lllLDEPts~LD~~~~~~i~~~l 188 (247)
T 2ff7_A 111 SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN--NPKILIFDEATSALDYESEHVIMRNM 188 (247)
T ss_dssp CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT--CCSEEEECCCCSCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 0 0001123348999999999999 99999999997776677777888899
Q ss_pred HHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030549 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
++++ +|.|| +++||+++.+. .||++++|..|..+.
T Consensus 189 ~~~~-~g~tv----iivtH~~~~~~-~~d~v~~l~~G~i~~ 223 (247)
T 2ff7_A 189 HKIC-KGRTV----IIIAHRLSTVK-NADRIIVMEKGKIVE 223 (247)
T ss_dssp HHHH-TTSEE----EEECSSGGGGT-TSSEEEEEETTEEEE
T ss_pred HHHc-CCCEE----EEEeCCHHHHH-hCCEEEEEECCEEEE
Confidence 9885 58999 99999999886 499999999887653
No 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.97 E-value=1.7e-31 Score=210.99 Aligned_cols=155 Identities=13% Similarity=0.158 Sum_probs=115.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeec-CcccccCCCCccCCcchhc--------------------cH
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPAAENFDYPVAMDIRELI--------------------SL 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~-~~~~~~~~~~~~~~~~~~~--------------------~~ 59 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.+... ..-.++..+.+.+++.+++ ..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~ 109 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHH
Confidence 59999999999999999999999999999999974210 0001111222222222211 12
Q ss_pred HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CCcEEEEEe
Q 030549 60 EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAVYL 138 (175)
Q Consensus 60 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~tvli~~l 138 (175)
.++++.+++..........-+..|+||..++++++. +|++++||||+...+...+..+.+++++++++ |.|| +
T Consensus 110 ~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tv----i 183 (253)
T 2nq2_C 110 MQALDYLNLTHLAKREFTSLSGGQRQLILIARAIAS--ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTV----V 183 (253)
T ss_dssp HHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT--TCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEE----E
T ss_pred HHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE----E
Confidence 446666776543322222234459999999999999 99999999997776777778888899998766 8999 9
Q ss_pred eeccchhhhhcCCCceeEeccch
Q 030549 139 LDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
++||+++++..+||+++++..|.
T Consensus 184 ~vtHd~~~~~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 184 FTTHQPNQVVAIANKTLLLNKQN 206 (253)
T ss_dssp EEESCHHHHHHHCSEEEEEETTE
T ss_pred EEecCHHHHHHhCCEEEEEeCCe
Confidence 99999999999999999998876
No 28
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.97 E-value=1.5e-31 Score=210.11 Aligned_cols=156 Identities=15% Similarity=0.026 Sum_probs=113.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCcc------CCcchhcc---------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA------MDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~------~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+. .++.+++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~ 106 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTD 106 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccCCCCH
Confidence 599999999999999999999999999999999999976421 22333331 12222111
Q ss_pred --HHHHHHHhCCCCCCchh-----------hhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHH
Q 030549 59 --LEDVMEELGLGPNGGLI-----------YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 59 --~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
...+++.+++....... ...-+..|+||..+++++.. +|++++||||+...+......+.+++++
T Consensus 107 ~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~--~p~lllLDEPts~LD~~~~~~i~~~l~~ 184 (243)
T 1mv5_A 107 EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR--NPKILMLDEATASLDSESESMVQKALDS 184 (243)
T ss_dssp HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCSCSSCSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 12233333332211100 01123348999999999999 9999999999777777778888889999
Q ss_pred HHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030549 126 LKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 126 l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
++ +|.|| +++||+++.+. .||+++++..|..+.
T Consensus 185 ~~-~~~tv----i~vtH~~~~~~-~~d~v~~l~~G~i~~ 217 (243)
T 1mv5_A 185 LM-KGRTT----LVIAHRLSTIV-DADKIYFIEKGQITG 217 (243)
T ss_dssp HH-TTSEE----EEECCSHHHHH-HCSEEEEEETTEECC
T ss_pred hc-CCCEE----EEEeCChHHHH-hCCEEEEEECCEEEE
Confidence 87 68999 99999999886 599999998877653
No 29
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.97 E-value=5.6e-31 Score=209.54 Aligned_cols=159 Identities=14% Similarity=0.119 Sum_probs=117.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcc--CccccceeEEeecCccc--------ccCCCCc-------cCCcchhc------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELI------ 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl--~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~------ 57 (175)
+||+++|+||||||||||+|+|+|+ ++|++|+|.++|.++.. ..+++.+ .+++.+++
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~ 124 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNA 124 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHh
Confidence 5999999999999999999999999 47999999999876421 1122222 11221111
Q ss_pred -----------------cHHHHHHHhCCCCC-Cchhhh-HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchH
Q 030549 58 -----------------SLEDVMEELGLGPN-GGLIYC-MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 58 -----------------~~~~~~~~~~l~~~-~~~~~~-~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
...++++.+++... ...... .-+..|+||..++++++. +|+++|||||+...+...+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~--~p~lLlLDEPts~LD~~~~~~ 202 (267)
T 2zu0_C 125 VRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL--EPELCILDESDSGLDIDALKV 202 (267)
T ss_dssp HHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHH--CCSEEEEESTTTTCCHHHHHH
T ss_pred hhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHH
Confidence 02345566676422 212211 134459999999999999 999999999966666777778
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeccchhhhhcC-CCceeEeccchhhHH
Q 030549 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTL-PPCIVCFCCTHTVVQ 165 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~-~~~~~~~~~~~~~~~ 165 (175)
+.+++++++++|.|| +++||+++++..+ ||+++++..|..+.+
T Consensus 203 l~~~l~~l~~~g~tv----iivtHd~~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 203 VADGVNSLRDGKRSF----IIVTHYQRILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHHTTCCSSCEE----EEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHhcCCEE----EEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence 888888887678999 9999999999887 899999988766543
No 30
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.97 E-value=7.5e-31 Score=209.23 Aligned_cols=156 Identities=17% Similarity=0.080 Sum_probs=111.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCcc------CCcchhccH--------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA------MDIRELISL-------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~------~~~~~~~~~-------- 59 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.++|.+. .++.+++..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~ 123 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTM 123 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcccCChH
Confidence 599999999999999999999999999999999999976522 12333331 122222110
Q ss_pred ------------HHHHHHh--CCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHH
Q 030549 60 ------------EDVMEEL--GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 60 ------------~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
.++++.+ ++..........-+..|+||..++++++. +|+++|||||+...+......+.++|++
T Consensus 124 ~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~~~l~~ 201 (271)
T 2ixe_A 124 EEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR--KPRLLILDNATSALDAGNQLRVQRLLYE 201 (271)
T ss_dssp HHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 0111222 11111111111123348999999999999 9999999999666667777788888988
Q ss_pred HHh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030549 126 LKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 126 l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+++ +|.|| +++||+++++.. ||++++|..|..+
T Consensus 202 ~~~~~g~tv----iivtHd~~~~~~-~d~v~~l~~G~i~ 235 (271)
T 2ixe_A 202 SPEWASRTV----LLITQQLSLAER-AHHILFLKEGSVC 235 (271)
T ss_dssp CTTTTTSEE----EEECSCHHHHTT-CSEEEEEETTEEE
T ss_pred HHhhcCCEE----EEEeCCHHHHHh-CCEEEEEECCEEE
Confidence 754 58999 999999999875 9999999887654
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=3.8e-30 Score=204.35 Aligned_cols=154 Identities=11% Similarity=0.112 Sum_probs=114.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----ccCC-CCc-----cCCcchhcc------------H
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFD-YPV-----AMDIRELIS------------L 59 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----~~~~-~~~-----~~~~~~~~~------------~ 59 (175)
||+++|+||||||||||+|+|+|++ |++|+|.++|.++.. +.++ |.+ ..++.+++. .
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~ 108 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLF 108 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHH
Confidence 8999999999999999999999999 999999999865421 2233 433 223333332 2
Q ss_pred HHHHHHhCCC-CCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEe
Q 030549 60 EDVMEELGLG-PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (175)
Q Consensus 60 ~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l 138 (175)
.++++.+++. .........-+..|+||..+++++.. +|++++||||+...+...+..+.++++++++ || +
T Consensus 109 ~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tv----i 179 (263)
T 2pjz_A 109 LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALAS--QPEIVGLDEPFENVDAARRHVISRYIKEYGK---EG----I 179 (263)
T ss_dssp HHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHT--CCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EE----E
T ss_pred HHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEECCccccCHHHHHHHHHHHHHhcC---cE----E
Confidence 3456666665 32222222223449999999999999 9999999999666666666677777777633 88 9
Q ss_pred eeccchhhhhcCCC-ceeEeccchhhHH
Q 030549 139 LDSQVCIRFRTLPP-CIVCFCCTHTVVQ 165 (175)
Q Consensus 139 ~~sH~~~~~~~~~~-~~~~~~~~~~~~~ 165 (175)
++||+++++..+|| +++++..+..+.+
T Consensus 180 ivtHd~~~~~~~~d~~i~~l~~G~i~~~ 207 (263)
T 2pjz_A 180 LVTHELDMLNLYKEYKAYFLVGNRLQGP 207 (263)
T ss_dssp EEESCGGGGGGCTTSEEEEEETTEEEEE
T ss_pred EEEcCHHHHHHhcCceEEEEECCEEEEe
Confidence 99999999999999 9999998876543
No 32
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.96 E-value=1.3e-30 Score=210.91 Aligned_cols=155 Identities=12% Similarity=0.093 Sum_probs=112.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCCCCCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNGG 73 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ +....|. .++.+++.++....
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~--Q~~~lf~-~Tv~eNi~~~~~~~ 155 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVP--QDTVLFN-DTIADNIRYGRVTA 155 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEEC--SSCCCCS-EEHHHHHHTTSTTC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEe--cCCccCc-ccHHHHHHhhcccC
Confidence 499999999999999999999999999999999999987532 2234433 2112221 13333333221100
Q ss_pred h------------------------------hhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030549 74 L------------------------------IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 74 ~------------------------------~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
. ....-+..|+||..|||++.. +|++||||||+...+......+.+.|
T Consensus 156 ~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~--~p~iLlLDEPts~LD~~~~~~i~~~l 233 (306)
T 3nh6_A 156 GNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK--APGIILLDEATSALDTSNERAIQASL 233 (306)
T ss_dssp CHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCSSCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHHHHH
Confidence 0 000113348999999999999 99999999996655566666777788
Q ss_pred HHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030549 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++.+ +.|+ +++||+++.+.. ||++++|+.|..+-++
T Consensus 234 ~~l~~-~~Tv----i~itH~l~~~~~-aD~i~vl~~G~iv~~G 270 (306)
T 3nh6_A 234 AKVCA-NRTT----IVVAHRLSTVVN-ADQILVIKDGCIVERG 270 (306)
T ss_dssp HHHHT-TSEE----EEECCSHHHHHT-CSEEEEEETTEEEEEE
T ss_pred HHHcC-CCEE----EEEEcChHHHHc-CCEEEEEECCEEEEEC
Confidence 88754 6899 999999999987 9999999988776543
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.96 E-value=2e-30 Score=205.66 Aligned_cols=155 Identities=17% Similarity=0.101 Sum_probs=109.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCcc------CCcchhcc---------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA------MDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~------~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+|+|+|+++| +|+|.++|.++.. +.++|.+. .++.+++.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~ 123 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDE 123 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCCCCHH
Confidence 5999999999999999999999999987 8999999976532 12333331 12222211
Q ss_pred -HHHHHHHhCCCCC-----C------chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030549 59 -LEDVMEELGLGPN-----G------GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l~~~-----~------~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
...+++.+++... . ......-+..|+||..++++++. +|++++||||+...+......+.++++++
T Consensus 124 ~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~~~l~~l 201 (260)
T 2ghi_A 124 EVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK--DPKIVIFDEATSSLDSKTEYLFQKAVEDL 201 (260)
T ss_dssp HHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 0112222222100 0 00001123348999999999999 99999999996666666777888889888
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030549 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
++ +.|| +++||+++.+. .||+++++..|..+.
T Consensus 202 ~~-~~tv----iivtH~~~~~~-~~d~i~~l~~G~i~~ 233 (260)
T 2ghi_A 202 RK-NRTL----IIIAHRLSTIS-SAESIILLNKGKIVE 233 (260)
T ss_dssp TT-TSEE----EEECSSGGGST-TCSEEEEEETTEEEE
T ss_pred cC-CCEE----EEEcCCHHHHH-hCCEEEEEECCEEEE
Confidence 54 7899 99999999886 599999998886653
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.96 E-value=3.4e-30 Score=200.74 Aligned_cols=156 Identities=15% Similarity=0.010 Sum_probs=104.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC-cccccCCCCccCCcchhcc---------HHHHHHHhCCCC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLGP 70 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~ 70 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.- ...+...+.+ .++.+++. ....++..++..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~ 111 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP-GTIKENIIFGVSYDEYRYRSVIKACQLEE 111 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCS-BCHHHHHHTTSCCCHHHHHHHHHHTTCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccC-CCHHHHhhccCCcChHHHHHHHHHhCcHH
Confidence 599999999999999999999999999999999998731 1112222222 24443321 112222222211
Q ss_pred ------CCc-----hhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH-HHHHHhCCCcEEEEEe
Q 030549 71 ------NGG-----LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF-VDHLKSRNFNVCAVYL 138 (175)
Q Consensus 71 ------~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~-l~~l~~~g~tvli~~l 138 (175)
... .....-+..|+||..+++++.. +|++++||||+...+......+.+. +++++ ++.|| +
T Consensus 112 ~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~--~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tv----i 184 (229)
T 2pze_A 112 DISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTR----I 184 (229)
T ss_dssp HHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHS--CCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEE----E
T ss_pred HHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEE----E
Confidence 000 0001123449999999999999 9999999999555555545555554 33433 47899 9
Q ss_pred eeccchhhhhcCCCceeEeccchhhHH
Q 030549 139 LDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
++||+++++. .||+++++..+..+.+
T Consensus 185 ~vtH~~~~~~-~~d~v~~l~~G~i~~~ 210 (229)
T 2pze_A 185 LVTSKMEHLK-KADKILILHEGSSYFY 210 (229)
T ss_dssp EECCCHHHHH-HCSEEEEEETTEEEEE
T ss_pred EEcCChHHHH-hCCEEEEEECCEEEEE
Confidence 9999999886 5999999998876543
No 35
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=3.5e-29 Score=216.20 Aligned_cols=155 Identities=14% Similarity=0.098 Sum_probs=114.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--ccCCCCccCCcchhcc-------------HHHHHHH
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELIS-------------LEDVMEE 65 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--~~~~~~~~~~~~~~~~-------------~~~~~~~ 65 (175)
+||++||+||||||||||+|+|+|+.+|++|+|.+++..+.. +.....+..++.+++. ..++++.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~ 372 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKR 372 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHH
Confidence 599999999999999999999999999999999987655321 1111111223333221 1223333
Q ss_pred hCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCCcEEEEEeeeccch
Q 030549 66 LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQVC 144 (175)
Q Consensus 66 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~ 144 (175)
+++..........-+..++||.++|++++. +|++||||||+...+...+..+.++|+++++ .|.|| +++||++
T Consensus 373 ~~l~~~~~~~~~~LSGGq~QRv~iAraL~~--~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tv----i~vsHdl 446 (538)
T 3ozx_A 373 LNLHRLLESNVNDLSGGELQKLYIAATLAK--EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT----FIIDHDL 446 (538)
T ss_dssp TTGGGCTTSBGGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEE----EEECSCH
T ss_pred cCCHHHhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE----EEEeCCH
Confidence 343322222222223349999999999999 9999999999777777777788889999864 68999 9999999
Q ss_pred hhhhcCCCceeEeccch
Q 030549 145 IRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 145 ~~~~~~~~~~~~~~~~~ 161 (175)
+++..+||++++|+.+.
T Consensus 447 ~~~~~~aDri~vl~~~~ 463 (538)
T 3ozx_A 447 SIHDYIADRIIVFKGEP 463 (538)
T ss_dssp HHHHHHCSEEEEEEEET
T ss_pred HHHHHhCCEEEEEeCCc
Confidence 99999999999998754
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=198.61 Aligned_cols=155 Identities=18% Similarity=0.079 Sum_probs=104.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC-cccccCCCCccCCcchhcc---------HHHHHHHhCC--
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGL-- 68 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l-- 68 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.- .-.++.. .+..++.+++. ...+.+.+++
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~ 108 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAW-IQNDSLRENILFGCQLEEPYYRSVIQACALLP 108 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCC-CCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCc-CCCcCHHHHhhCccccCHHHHHHHHHHHhhHH
Confidence 599999999999999999999999999999999998731 0111111 12223333321 1222222221
Q ss_pred ----CCC-----CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHH---HHHhCCCcEEEE
Q 030549 69 ----GPN-----GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD---HLKSRNFNVCAV 136 (175)
Q Consensus 69 ----~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~---~l~~~g~tvli~ 136 (175)
.+. .......-+..|+||..+++++.. +|++++||||+...+......+.+.+. ++ .+|.||
T Consensus 109 ~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~~~~tv--- 182 (237)
T 2cbz_A 109 DLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS--NADIYLFDDPLSAVDAHVGKHIFENVIGPKGM-LKNKTR--- 182 (237)
T ss_dssp HHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEESTTTTSCHHHHHHHHHHTTSTTST-TTTSEE---
T ss_pred HHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHHHHHHHHHhh-cCCCEE---
Confidence 110 001111123459999999999999 999999999955555555555555553 33 248899
Q ss_pred EeeeccchhhhhcCCCceeEeccchhhH
Q 030549 137 YLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 137 ~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
+++||+++.+. .||+++++..|..+.
T Consensus 183 -iivtH~~~~~~-~~d~v~~l~~G~i~~ 208 (237)
T 2cbz_A 183 -ILVTHSMSYLP-QVDVIIVMSGGKISE 208 (237)
T ss_dssp -EEECSCSTTGG-GSSEEEEEETTEEEE
T ss_pred -EEEecChHHHH-hCCEEEEEeCCEEEE
Confidence 99999999875 699999998876653
No 37
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.95 E-value=2.1e-28 Score=211.36 Aligned_cols=155 Identities=15% Similarity=0.054 Sum_probs=114.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcccccee-----------EEeecCccc-------c------cCCCCcc------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTM-----------HIVNLDPAA-------E------NFDYPVA------ 50 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I-----------~i~g~~~~~-------~------~~~~~~~------ 50 (175)
+||++||+||||||||||+|+|+|+++|++|+| .+.|.++.. . ...+...
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLK 103 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhcc
Confidence 599999999999999999999999999999998 455554311 0 0111110
Q ss_pred CCcchhc-------cHHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030549 51 MDIRELI-------SLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 51 ~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
.++.+.+ ...++++.+++..........-+..++|+..|++++.. +|++|+||||+...+......+.++|
T Consensus 104 ~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~--~p~illlDEPts~LD~~~~~~l~~~l 181 (538)
T 3ozx_A 104 GTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLR--EADVYIFDQPSSYLDVRERMNMAKAI 181 (538)
T ss_dssp SBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred CcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHHHHH
Confidence 0111111 24567777777543322222234459999999999999 99999999996666666677788899
Q ss_pred HHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchh
Q 030549 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHT 162 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~ 162 (175)
+++++ |.|| +++||+++++..+||++.++..+..
T Consensus 182 ~~l~~-g~ti----i~vsHdl~~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 182 RELLK-NKYV----IVVDHDLIVLDYLTDLIHIIYGESS 215 (538)
T ss_dssp HHHCT-TSEE----EEECSCHHHHHHHCSEEEEEEEETT
T ss_pred HHHhC-CCEE----EEEEeChHHHHhhCCEEEEecCCcc
Confidence 99865 8999 9999999999999999999986543
No 38
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.95 E-value=2.5e-28 Score=210.91 Aligned_cols=154 Identities=17% Similarity=0.059 Sum_probs=115.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcccccee---------EEeecCccc---------ccCCCCcc----------CC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTM---------HIVNLDPAA---------ENFDYPVA----------MD 52 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I---------~i~g~~~~~---------~~~~~~~~----------~~ 52 (175)
+||+++|+||||||||||+|+|+|+++|++|++ .++|.++.. ..+++.+. .+
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ 125 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGK 125 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhcc
Confidence 599999999999999999999999999999996 345544321 01111110 01
Q ss_pred cchhc-------cHHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHH
Q 030549 53 IRELI-------SLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 53 ~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
..+++ ...++++.+++..........-+..|+||..|++++.. +|++||||||+...+......+.++|++
T Consensus 126 v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~--~P~lLlLDEPTs~LD~~~~~~l~~~L~~ 203 (538)
T 1yqt_A 126 VIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLR--NATFYFFDEPSSYLDIRQRLNAARAIRR 203 (538)
T ss_dssp HHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 21211 24567888887654333322234459999999999999 9999999999766667777788889999
Q ss_pred HHhCCCcEEEEEeeeccchhhhhcCCCceeEeccc
Q 030549 126 LKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 126 l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
++++|.|| +++||+++++..+||+++++..+
T Consensus 204 l~~~g~tv----i~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 204 LSEEGKSV----LVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHTTCEE----EEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHhcCCEE----EEEeCCHHHHHHhCCEEEEEcCc
Confidence 97789999 99999999999999999999764
No 39
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.95 E-value=7.8e-29 Score=206.36 Aligned_cols=156 Identities=16% Similarity=0.089 Sum_probs=108.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+|+|+|+++ ++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~ 124 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQE 124 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhccccCHHH
Confidence 599999999999999999999999998 89999999987532 2333333 123333321
Q ss_pred HHHHHHHhCCCCCCchhhhH-----------HHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030549 59 LEDVMEELGLGPNGGLIYCM-----------EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++.......... -+..|+||.+|+|++.. +|++++||||....+...+..+++.|+++.
T Consensus 125 v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~--~P~lLLLDEPts~LD~~~~~~l~~~l~~~~ 202 (390)
T 3gd7_A 125 IWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS--KAKILLLDEPSAHLDPVTYQIIRRTLKQAF 202 (390)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT--TCCEEEEESHHHHSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHh
Confidence 22344444443211111111 23449999999999999 999999999944444455556666776653
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030549 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
++.|+ +++||+++.+ ..||++++|..|..+-+
T Consensus 203 -~~~tv----i~vtHd~e~~-~~aDri~vl~~G~i~~~ 234 (390)
T 3gd7_A 203 -ADCTV----ILCEARIEAM-LECDQFLVIEENKVRQY 234 (390)
T ss_dssp -TTSCE----EEECSSSGGG-TTCSEEEEEETTEEEEE
T ss_pred -CCCEE----EEEEcCHHHH-HhCCEEEEEECCEEEEE
Confidence 47899 9999998655 56999999998876543
No 40
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.95 E-value=5e-28 Score=210.74 Aligned_cols=155 Identities=15% Similarity=0.114 Sum_probs=114.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCCC-CC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGP-NG 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 72 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ +....+. .++.+++.++. ..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~--Q~~~l~~-~tv~eni~~~~~~~ 444 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVS--QNVHLFN-DTIANNIAYAAEGE 444 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEc--CCCcccc-ccHHHHHhccCCCC
Confidence 599999999999999999999999999999999999987532 2344444 2222332 24555544432 00
Q ss_pred -chh-----------------------------hhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030549 73 -GLI-----------------------------YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 73 -~~~-----------------------------~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
... ...-+.+|+||..++|++.. +|++++||||+...+......+.+.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~--~p~illlDEpts~LD~~~~~~i~~~ 522 (582)
T 3b5x_A 445 YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR--DAPVLILDEATSALDTESERAIQAA 522 (582)
T ss_pred CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHHHH
Confidence 000 00112338999999999999 9999999999666666666677778
Q ss_pred HHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030549 123 VDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++++++ |+|+ +++||+++.+. .||++++++.|..+-++
T Consensus 523 l~~~~~-~~tv----i~itH~~~~~~-~~d~i~~l~~G~i~~~g 560 (582)
T 3b5x_A 523 LDELQK-NKTV----LVIAHRLSTIE-QADEILVVDEGEIIERG 560 (582)
T ss_pred HHHHcC-CCEE----EEEecCHHHHH-hCCEEEEEECCEEEEEC
Confidence 888754 8999 99999999886 69999999988766443
No 41
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.95 E-value=3.7e-28 Score=211.57 Aligned_cols=153 Identities=16% Similarity=0.100 Sum_probs=111.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCCC-CC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGP-NG 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 72 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ +....+. .++.+++.++. ..
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~--Q~~~l~~-~tv~eni~~~~~~~ 444 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVS--QNVHLFN-DTVANNIAYARTEE 444 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEEC--SSCCCCS-SBHHHHHHTTTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEc--cCCcCCC-CCHHHHHhccCCCC
Confidence 599999999999999999999999999999999999977532 1233333 2112222 13333332221 00
Q ss_pred -ch-----------------------------hhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030549 73 -GL-----------------------------IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 73 -~~-----------------------------~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
.. ....-+.+|+||..++|++.. +|++++||||+...+......+.+.
T Consensus 445 ~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~--~p~illlDEpts~LD~~~~~~i~~~ 522 (582)
T 3b60_A 445 YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR--DSPILILDEATSALDTESERAIQAA 522 (582)
T ss_dssp CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH--CCSEEEEETTTSSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECccccCCHHHHHHHHHH
Confidence 00 000123348999999999999 9999999999666666667777888
Q ss_pred HHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030549 123 VDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
++++++ |+|+ +++||+++.+. .||++++++.|..+-
T Consensus 523 l~~~~~-~~tv----i~itH~~~~~~-~~d~i~~l~~G~i~~ 558 (582)
T 3b60_A 523 LDELQK-NRTS----LVIAHRLSTIE-QADEIVVVEDGIIVE 558 (582)
T ss_dssp HHHHHT-TSEE----EEECSCGGGTT-TCSEEEEEETTEEEE
T ss_pred HHHHhC-CCEE----EEEeccHHHHH-hCCEEEEEECCEEEE
Confidence 888864 8999 99999999885 699999999887654
No 42
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.95 E-value=6.6e-28 Score=210.72 Aligned_cols=155 Identities=17% Similarity=0.090 Sum_probs=115.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcccccee---------EEeecCccc---------ccCCCCcc----------CC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTM---------HIVNLDPAA---------ENFDYPVA----------MD 52 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I---------~i~g~~~~~---------~~~~~~~~----------~~ 52 (175)
+||+++|+||||||||||+|+|+|+++|++|++ .++|.+... ..+.+.+. .+
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t 195 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGK 195 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSB
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhcccc
Confidence 599999999999999999999999999999996 345544311 01111110 02
Q ss_pred cchhc-------cHHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHH
Q 030549 53 IRELI-------SLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 53 ~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
+.+++ ...++++.+++..........-+..|+||..|+++++. +|++|+||||+...+...+..+.++|++
T Consensus 196 v~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~--~P~lLlLDEPTs~LD~~~~~~l~~~L~~ 273 (607)
T 3bk7_A 196 VRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLR--KAHFYFFDEPSSYLDIRQRLKVARVIRR 273 (607)
T ss_dssp HHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHS--CCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 22221 24567788887643322222224459999999999999 9999999999777667777788889999
Q ss_pred HHhCCCcEEEEEeeeccchhhhhcCCCceeEeccch
Q 030549 126 LKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 126 l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
++++|.|| +++||+++++..++|+++++..+.
T Consensus 274 l~~~g~tv----IivsHdl~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 274 LANEGKAV----LVVEHDLAVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp HHHTTCEE----EEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHhcCCEE----EEEecChHHHHhhCCEEEEECCCc
Confidence 97779999 999999999999999999998653
No 43
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.2e-28 Score=211.83 Aligned_cols=156 Identities=13% Similarity=0.027 Sum_probs=113.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeE-----------EeecCccc-------ccC------CCCcc------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA-------ENF------DYPVA------ 50 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~-----------i~g~~~~~-------~~~------~~~~~------ 50 (175)
+||++||+||||||||||+|+|+|+++|++|+|. +.|.+... ... .+...
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIK 181 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhc
Confidence 4999999999999999999999999999999983 23322110 011 01000
Q ss_pred ---CCcchh---------ccHHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchH
Q 030549 51 ---MDIREL---------ISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 51 ---~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
.+..+. -...++++.+++..........-+..++|+..+++++.. +|++|+||||+...+......
T Consensus 182 ~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~--~p~llllDEPts~LD~~~~~~ 259 (608)
T 3j16_B 182 GPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQ--EADVYMFDEPSSYLDVKQRLN 259 (608)
T ss_dssp SSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHS--CCSEEEEECTTTTCCHHHHHH
T ss_pred chhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHh--CCCEEEEECcccCCCHHHHHH
Confidence 000011 013456777777543322222234459999999999999 999999999966666666777
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchh
Q 030549 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHT 162 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~ 162 (175)
+.+++++++++|.|| +++||+++++..++|+++++..+..
T Consensus 260 l~~~l~~l~~~g~tv----i~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 260 AAQIIRSLLAPTKYV----ICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHGGGTTTCEE----EEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHhCCCEE----EEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 888999998889999 9999999999999999999986554
No 44
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=1.1e-27 Score=208.78 Aligned_cols=155 Identities=16% Similarity=0.051 Sum_probs=112.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCCCCCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNGG 73 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ +....+. .++.+++.++....
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~--Q~~~lf~-~tv~eni~~~~~~~ 444 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVP--QETVLFS-GTIKENLKWGREDA 444 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEEC--SSCCCCS-EEHHHHHTTTCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEEC--CCCcCcC-ccHHHHHhccCCCC
Confidence 599999999999999999999999999999999999988643 1233333 1111221 12333332221100
Q ss_pred ------------------------------hhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030549 74 ------------------------------LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 74 ------------------------------~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
.....-+..|+||..++|++.. +|++++||||+...+......+.+.+
T Consensus 445 ~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~--~p~illlDEpts~LD~~~~~~i~~~l 522 (587)
T 3qf4_A 445 TDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK--KPKVLILDDCTSSVDPITEKRILDGL 522 (587)
T ss_dssp CHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT--CCSEEEEESCCTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHHHHH
Confidence 0000113348999999999999 99999999996665566666777778
Q ss_pred HHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030549 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++. +|+|+ +++||+++.+. .||++++++.|..+-++
T Consensus 523 ~~~~-~~~tv----i~itH~l~~~~-~~d~i~vl~~G~i~~~g 559 (587)
T 3qf4_A 523 KRYT-KGCTT----FIITQKIPTAL-LADKILVLHEGKVAGFG 559 (587)
T ss_dssp HHHS-TTCEE----EEEESCHHHHT-TSSEEEEEETTEEEEEE
T ss_pred HHhC-CCCEE----EEEecChHHHH-hCCEEEEEECCEEEEEC
Confidence 7774 58999 99999999885 89999999988766443
No 45
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.94 E-value=1.5e-28 Score=197.63 Aligned_cols=154 Identities=16% Similarity=0.017 Sum_probs=102.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC-cccccCCCCccCCcchhcc--------HHHHHHHhCCCCC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS--------LEDVMEELGLGPN 71 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~ 71 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.- .-.+...+.+ .++.+++. ....++..++...
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~l~~~ 141 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP-GTIKENIIGVSYDEYRYRSVIKACQLEED 141 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCS-SBHHHHHHTTCCCHHHHHHHHHHTTCHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCc-ccHHHHhhCcccchHHHHHHHHHhChHHH
Confidence 599999999999999999999999999999999998731 1112222222 24444331 1112222222100
Q ss_pred ---C--ch------hhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH-HHHHHhCCCcEEEEEee
Q 030549 72 ---G--GL------IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF-VDHLKSRNFNVCAVYLL 139 (175)
Q Consensus 72 ---~--~~------~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~-l~~l~~~g~tvli~~l~ 139 (175)
. .. ....-+..|+||..++++++. +|++++||||....+......+.+. +++++ +|.|| ++
T Consensus 142 l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tv----ii 214 (290)
T 2bbs_A 142 ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTR----IL 214 (290)
T ss_dssp HHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEE----EE
T ss_pred HHhccccccchhcCccCcCCHHHHHHHHHHHHHHC--CCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEE----EE
Confidence 0 00 001123448999999999999 9999999999555445545555554 23333 47899 99
Q ss_pred eccchhhhhcCCCceeEeccchhh
Q 030549 140 DSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 140 ~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+||+++.+. .||+++++..|..+
T Consensus 215 vtHd~~~~~-~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 215 VTSKMEHLK-KADKILILHEGSSY 237 (290)
T ss_dssp ECCCHHHHH-HSSEEEEEETTEEE
T ss_pred EecCHHHHH-cCCEEEEEECCeEE
Confidence 999999886 59999999887654
No 46
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=7.8e-28 Score=210.14 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=112.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCCCCC-
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNG- 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 72 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ +....+. .++.+++.++...
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~--Q~~~lf~-~tv~eni~~~~~~~ 456 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVL--QDTILFS-TTVKENLKYGNPGA 456 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEEC--TTCCCCS-SBHHHHHHSSSTTC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEe--CCCcccc-ccHHHHHhcCCCCC
Confidence 599999999999999999999999999999999999987542 1233332 1111111 1222222221100
Q ss_pred -----------------------ch----hhh--HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030549 73 -----------------------GL----IYC--MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 73 -----------------------~~----~~~--~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
.. ... .-+.+|+||..+||++.. +|++++||||+...+......+.+.+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~--~p~illlDEpts~LD~~~~~~i~~~l 534 (598)
T 3qf4_B 457 TDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA--NPKILILDEATSNVDTKTEKSIQAAM 534 (598)
T ss_dssp CTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHT--CCSEEEECCCCTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHHHHH
Confidence 00 000 113348999999999999 99999999996665566666777788
Q ss_pred HHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030549 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++. +|+|+ +++||+++.+.. ||++++++.|..+-+++
T Consensus 535 ~~~~-~~~t~----i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 572 (598)
T 3qf4_B 535 WKLM-EGKTS----IIIAHRLNTIKN-ADLIIVLRDGEIVEMGK 572 (598)
T ss_dssp HHHH-TTSEE----EEESCCTTHHHH-CSEEEEECSSSEEECSC
T ss_pred HHHc-CCCEE----EEEecCHHHHHc-CCEEEEEECCEEEEECC
Confidence 8875 58999 999999999866 99999999988765543
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.94 E-value=3.7e-27 Score=205.97 Aligned_cols=152 Identities=16% Similarity=0.130 Sum_probs=114.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc--ccccCCCCccCCcchhcc------------HHHHHHHh
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS------------LEDVMEEL 66 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~--~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 66 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.+. ..+ ..+.....+..++.+++. ..++++.+
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~ 459 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL 459 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-eEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc
Confidence 499999999999999999999999999999999762 111 112222223334433321 23456667
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH-hCCCcEEEEEeeeccchh
Q 030549 67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQVCI 145 (175)
Q Consensus 67 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-~~g~tvli~~l~~sH~~~ 145 (175)
++..........-+..++||.++++++.. +|++||||||+...+...+..+.++|++++ ++|.|| +++||+++
T Consensus 460 ~l~~~~~~~~~~LSGGe~QRv~iAraL~~--~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv----i~vsHd~~ 533 (607)
T 3bk7_A 460 GIIDLYDRNVEDLSGGELQRVAIAATLLR--DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA----LVVEHDVL 533 (607)
T ss_dssp TCTTTTTSBGGGCCHHHHHHHHHHHHHTS--CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEE----EEECSCHH
T ss_pred CCchHhcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE----EEEeCCHH
Confidence 77543322222234459999999999999 999999999977777777788888999985 568999 99999999
Q ss_pred hhhcCCCceeEecc
Q 030549 146 RFRTLPPCIVCFCC 159 (175)
Q Consensus 146 ~~~~~~~~~~~~~~ 159 (175)
++..+||+++++..
T Consensus 534 ~~~~~adrv~vl~~ 547 (607)
T 3bk7_A 534 MIDYVSDRLIVFEG 547 (607)
T ss_dssp HHHHHCSEEEEEEE
T ss_pred HHHHhCCEEEEEcC
Confidence 99999999999985
No 48
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.94 E-value=8.2e-28 Score=209.26 Aligned_cols=159 Identities=14% Similarity=0.096 Sum_probs=111.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ ..++++++.
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~ 445 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDE 445 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHH
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHH
Confidence 599999999999999999999999999999999999987532 1233332 123333332
Q ss_pred -HHHHHHHhCCCC-----------CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030549 59 -LEDVMEELGLGP-----------NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..+.++..++.. ........-+.+|+||..+||++.. +|++++||||+...+......+.+.++++
T Consensus 446 ~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~--~p~illlDEpts~LD~~~~~~i~~~l~~~ 523 (578)
T 4a82_A 446 EVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN--NPPILILDEATSALDLESESIIQEALDVL 523 (578)
T ss_dssp HHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH--CCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 112222221110 0000001123349999999999999 99999999995555555566777788777
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030549 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
. +++|+ +++||+++.+.. ||++++++.|..+-+++
T Consensus 524 ~-~~~t~----i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 558 (578)
T 4a82_A 524 S-KDRTT----LIVAHRLSTITH-ADKIVVIENGHIVETGT 558 (578)
T ss_dssp T-TTSEE----EEECSSGGGTTT-CSEEEEEETTEEEEEEC
T ss_pred c-CCCEE----EEEecCHHHHHc-CCEEEEEECCEEEEECC
Confidence 4 47899 999999999865 99999999887665443
No 49
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.94 E-value=4.5e-28 Score=211.51 Aligned_cols=157 Identities=18% Similarity=0.133 Sum_probs=111.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ ..++++++.
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~ 448 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSV 448 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCcccc
Confidence 599999999999999999999999999999999999976532 1233332 112222220
Q ss_pred ----HHHHHHHhCCCCC-----Cchh------hhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030549 59 ----LEDVMEELGLGPN-----GGLI------YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 59 ----~~~~~~~~~l~~~-----~~~~------~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
..++++..++... .... ...-+.+|+||..++|++.. +|++++||||+...+....+.+.+.+
T Consensus 449 ~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~--~p~illlDEpts~LD~~~~~~i~~~l 526 (595)
T 2yl4_A 449 TAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK--NPKILLLDEATSALDAENEYLVQEAL 526 (595)
T ss_dssp CHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHH--CCSEEEEECCCSSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECcccCCCHHHHHHHHHHH
Confidence 1122222222100 0000 01123348999999999999 99999999996666666677788888
Q ss_pred HHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030549 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+++++ ++|+ +++||+++.+. .||++++++.|..+-+
T Consensus 527 ~~~~~-~~tv----i~itH~~~~~~-~~d~i~~l~~G~i~~~ 562 (595)
T 2yl4_A 527 DRLMD-GRTV----LVIAHRLSTIK-NANMVAVLDQGKITEY 562 (595)
T ss_dssp HHHHT-TSEE----EEECCCHHHHH-HSSEEEEEETTEEEEE
T ss_pred HHHhc-CCEE----EEEecCHHHHH-cCCEEEEEECCEEEEE
Confidence 88865 7899 99999999886 5999999998876543
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.94 E-value=2.6e-27 Score=204.58 Aligned_cols=152 Identities=16% Similarity=0.133 Sum_probs=109.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc--ccccCCCCccCCcchhccH------------HHHHHHh
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELISL------------EDVMEEL 66 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~--~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 66 (175)
+||++||+||||||||||+|+|+|+.+|++|+|.+. ..+ -.++....+..++.+++.. .++++.+
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-LTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPL 389 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-ceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc
Confidence 499999999999999999999999999999999762 111 1111222233344333221 1122233
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH-hCCCcEEEEEeeeccchh
Q 030549 67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQVCI 145 (175)
Q Consensus 67 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-~~g~tvli~~l~~sH~~~ 145 (175)
++..........-+..++||.++++++.. +|++||||||+...+...+..+.++|++++ ++|.|| +++||+++
T Consensus 390 ~l~~~~~~~~~~LSGGe~qrv~lAraL~~--~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tv----i~vsHd~~ 463 (538)
T 1yqt_A 390 GIIDLYDREVNELSGGELQRVAIAATLLR--DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA----LVVEHDVL 463 (538)
T ss_dssp TCGGGTTSBGGGCCHHHHHHHHHHHHHTS--CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEE----EEECSCHH
T ss_pred CChhhhcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEE----EEEeCCHH
Confidence 33221111111223349999999999999 999999999977777777888888999986 468999 99999999
Q ss_pred hhhcCCCceeEecc
Q 030549 146 RFRTLPPCIVCFCC 159 (175)
Q Consensus 146 ~~~~~~~~~~~~~~ 159 (175)
++..+||++++|..
T Consensus 464 ~~~~~~drv~vl~~ 477 (538)
T 1yqt_A 464 MIDYVSDRLMVFEG 477 (538)
T ss_dssp HHHHHCSEEEEEEE
T ss_pred HHHHhCCEEEEEeC
Confidence 99999999999985
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.9e-27 Score=204.19 Aligned_cols=152 Identities=13% Similarity=0.044 Sum_probs=110.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc--ccccCCCCccCCcchhc------------cHHHHHHHh
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELI------------SLEDVMEEL 66 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~--~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 66 (175)
+||+++|+||||||||||+|+|+|+.+|++|+.. .+..+ ..+.....+..++.+++ ...++++.+
T Consensus 377 ~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~-~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l 455 (608)
T 3j16_B 377 DSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI-PKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPL 455 (608)
T ss_dssp TTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC-CSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHH
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc-cCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHc
Confidence 3799999999999999999999999999999731 11110 01111111111222211 123566677
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH-hCCCcEEEEEeeeccchh
Q 030549 67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQVCI 145 (175)
Q Consensus 67 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-~~g~tvli~~l~~sH~~~ 145 (175)
++..........-+..++||.++|++++. +|++|+||||+...+...+..+.++|++++ ++|.|| +++||+++
T Consensus 456 ~l~~~~~~~~~~LSGGqkQRv~iAraL~~--~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tv----iivtHdl~ 529 (608)
T 3j16_B 456 RIDDIIDQEVQHLSGGELQRVAIVLALGI--PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTA----FIVEHDFI 529 (608)
T ss_dssp TSTTTSSSBSSSCCHHHHHHHHHHHHTTS--CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEE----EEECSCHH
T ss_pred CChhhhcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEE----EEEeCCHH
Confidence 76654333332234459999999999999 999999999977766777778888999885 569999 99999999
Q ss_pred hhhcCCCceeEecc
Q 030549 146 RFRTLPPCIVCFCC 159 (175)
Q Consensus 146 ~~~~~~~~~~~~~~ 159 (175)
++..+||++++++.
T Consensus 530 ~~~~~aDrvivl~~ 543 (608)
T 3j16_B 530 MATYLADKVIVFEG 543 (608)
T ss_dssp HHHHHCSEEEECEE
T ss_pred HHHHhCCEEEEEeC
Confidence 99999999999986
No 52
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.91 E-value=2.4e-25 Score=208.07 Aligned_cols=160 Identities=18% Similarity=0.109 Sum_probs=112.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhccH--------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELISL-------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~~-------- 59 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.+++.+ .-++++++..
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~ 494 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMD 494 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHH
Confidence 599999999999999999999999999999999999987532 1122222 2244444321
Q ss_pred --HHHHHHhCC---------CCC--CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030549 60 --EDVMEELGL---------GPN--GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 60 --~~~~~~~~l---------~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
.+.++.... +.. .......-+..|+||..+||++.. +|++++||||+...+......+.+.++++
T Consensus 495 ~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~--~p~iliLDEpts~LD~~~~~~i~~~l~~~ 572 (1284)
T 3g5u_A 495 EIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR--NPKILLLDEATSALDTESEAVVQAALDKA 572 (1284)
T ss_dssp HHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH--CCSEEEEESTTCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 111111111 000 000000123459999999999999 99999999995554555555666777765
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030549 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
. +|+|+ +++||+++.+.. +|++++|+.|..+.++++
T Consensus 573 ~-~~~t~----i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~ 608 (1284)
T 3g5u_A 573 R-EGRTT----IVIAHRLSTVRN-ADVIAGFDGGVIVEQGNH 608 (1284)
T ss_dssp H-TTSEE----EEECSCHHHHTT-CSEEEECSSSCCCCEECH
T ss_pred c-CCCEE----EEEecCHHHHHc-CCEEEEEECCEEEEECCH
Confidence 4 58999 999999999976 999999999988765544
No 53
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.91 E-value=2.4e-25 Score=207.98 Aligned_cols=159 Identities=13% Similarity=0.087 Sum_probs=112.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||++||+||||||||||+++|+|+++|++|+|.++|.++.. +.+++.+ ..++++++.
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~ 1137 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVS 1137 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCC
Confidence 599999999999999999999999999999999999988642 2233333 112222221
Q ss_pred ---HHHHHHHhCCCC-----CCchh------hhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHH
Q 030549 59 ---LEDVMEELGLGP-----NGGLI------YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 ---~~~~~~~~~l~~-----~~~~~------~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..+.++..++.. ..... -..-+.+|+||..++|++.. +|++|+||||+...+......+.+.++
T Consensus 1138 ~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~--~p~iLiLDEpTs~lD~~~~~~i~~~l~ 1215 (1284)
T 3g5u_A 1138 YEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVR--QPHILLLDEATSALDTESEKVVQEALD 1215 (1284)
T ss_dssp HHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHH--CCSSEEEESCSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 111122211110 00000 00123348999999999999 999999999966666666667777887
Q ss_pred HHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030549 125 HLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 125 ~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++ .+|+|+ +++||+++.+.. ||++++|+.|..+-+++
T Consensus 1216 ~~-~~~~tv----i~isH~l~~i~~-~dri~vl~~G~i~~~g~ 1252 (1284)
T 3g5u_A 1216 KA-REGRTC----IVIAHRLSTIQN-ADLIVVIQNGKVKEHGT 1252 (1284)
T ss_dssp HH-SSSSCE----EEECSCTTGGGS-CSEEEEEETBEEEEEEC
T ss_pred Hh-CCCCEE----EEEecCHHHHHc-CCEEEEEECCEEEEECC
Confidence 75 458999 999999999865 99999999987765443
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.91 E-value=2.6e-24 Score=189.99 Aligned_cols=150 Identities=13% Similarity=0.070 Sum_probs=95.4
Q ss_pred CCeEEEEECCCCCcHHHHH---------------------HHHHccCcccc-------ceeEEeecCcccc---cCCC--
Q 030549 1 MGYAQLVIGPAGSGKSTYC---------------------SSLYRHCETVR-------RTMHIVNLDPAAE---NFDY-- 47 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLl---------------------k~i~gl~~~~~-------G~I~i~g~~~~~~---~~~~-- 47 (175)
+||++||+||||||||||+ +++.|+.+|+. |.|.+++.+.... .+++
T Consensus 43 ~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~~~~~ig~v~ 122 (670)
T 3ux8_A 43 RGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVT 122 (670)
T ss_dssp TTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-----CCBHHHHT
T ss_pred CCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhccchhceeeee
Confidence 5999999999999999998 89999999984 4555555432110 0000
Q ss_pred ------------------------CccCCcchhccH------------------------HHHHHHhCCCCCC-chhhhH
Q 030549 48 ------------------------PVAMDIRELISL------------------------EDVMEELGLGPNG-GLIYCM 78 (175)
Q Consensus 48 ------------------------~~~~~~~~~~~~------------------------~~~~~~~~l~~~~-~~~~~~ 78 (175)
.+.+++.+++.. ...++.+++.... ......
T Consensus 123 q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 202 (670)
T 3ux8_A 123 EIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGT 202 (670)
T ss_dssp TCC-------------------------CC--------------------------CHHHHHHHHHTTCTTCCTTCBGGG
T ss_pred chhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCchhhhcCCccc
Confidence 011122222211 1124555554321 112222
Q ss_pred HHHHHHHHHHHHHHhhccCCCC--EEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeE
Q 030549 79 EHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVC 156 (175)
Q Consensus 79 ~~~~~~~~~~l~~~l~~~~~p~--lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~ 156 (175)
-+..|+||..|++++.. +|+ +||||||+...+......+.+++++++++|.|| +++||+++.+. .||++++
T Consensus 203 LSGGe~QRv~iArAL~~--~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tv----i~vtHd~~~~~-~~d~ii~ 275 (670)
T 3ux8_A 203 LSGGEAQRIRLATQIGS--RLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTL----IVVEHDEDTML-AADYLID 275 (670)
T ss_dssp SCHHHHHHHHHHHHHHT--CCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEE----EEECCCHHHHH-HCSEEEE
T ss_pred CCHHHHHHHHHHHHHhh--CCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEE----EEEeCCHHHHh-hCCEEEE
Confidence 23449999999999999 988 999999977777777888999999998889999 99999999765 5999999
Q ss_pred e
Q 030549 157 F 157 (175)
Q Consensus 157 ~ 157 (175)
+
T Consensus 276 l 276 (670)
T 3ux8_A 276 I 276 (670)
T ss_dssp E
T ss_pred e
Confidence 9
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.90 E-value=2e-24 Score=195.90 Aligned_cols=78 Identities=12% Similarity=-0.026 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEecc
Q 030549 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
+.+|+||..|++++.. +|++||||||+...+...... +++.+++.+.|| +++||+++++..+||+++++..
T Consensus 903 SGGQkQRVaLArAL~~--~P~LLLLDEPT~gLD~~s~~~---L~~~L~~~g~tV----IiISHD~e~v~~l~DrVivL~~ 973 (986)
T 2iw3_A 903 SGGQKVKLVLAAGTWQ--RPHLIVLDEPTNYLDRDSLGA---LSKALKEFEGGV----IIITHSAEFTKNLTEEVWAVKD 973 (986)
T ss_dssp CHHHHHHHHHHHHHTT--CCSEEEEECGGGTCCHHHHHH---HHHHHHSCSSEE----EEECSCHHHHTTTCCEEECCBT
T ss_pred CHHHHHHHHHHHHHHh--CCCEEEEECCccCCCHHHHHH---HHHHHHHhCCEE----EEEECCHHHHHHhCCEEEEEEC
Confidence 3449999999999999 999999999944444433333 334444456799 9999999999999999999998
Q ss_pred chhhHHh
Q 030549 160 THTVVQR 166 (175)
Q Consensus 160 ~~~~~~~ 166 (175)
|..+..+
T Consensus 974 G~Iv~~G 980 (986)
T 2iw3_A 974 GRMTPSG 980 (986)
T ss_dssp TBCCC--
T ss_pred CEEEEeC
Confidence 8766543
No 56
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.89 E-value=5.3e-24 Score=199.44 Aligned_cols=160 Identities=17% Similarity=0.112 Sum_probs=113.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCC------ccCCcchhcc---------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYP------VAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~------~~~~~~~~~~--------- 58 (175)
+|+.++|+||+|||||||+++|.|+++|++|+|.++|.+++. +.++|+ +.-++++++.
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~ 522 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITRE 522 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHH
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHH
Confidence 599999999999999999999999999999999999987543 122222 2223444432
Q ss_pred -HHHHHH---------HhCCCCCCchhh--hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030549 59 -LEDVME---------ELGLGPNGGLIY--CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~---------~~~l~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++ .+.-+..-.... ..-+.+||||.+|||++.+ +|+++|||||+...+......+.+.++++
T Consensus 523 ~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~--~~~IliLDE~tSaLD~~te~~i~~~l~~~ 600 (1321)
T 4f4c_A 523 EMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR--NPKILLLDEATSALDAESEGIVQQALDKA 600 (1321)
T ss_dssp HHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc--CCCEEEEecccccCCHHHHHHHHHHHHHH
Confidence 112222 221111100000 0123459999999999999 99999999995444455555667777776
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030549 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
. +|+|+ +++||++..+ ..+|++++|+.|..+-++++
T Consensus 601 ~-~~~T~----iiiaHrls~i-~~aD~Iivl~~G~ive~Gth 636 (1321)
T 4f4c_A 601 A-KGRTT----IIIAHRLSTI-RNADLIISCKNGQVVEVGDH 636 (1321)
T ss_dssp H-TTSEE----EEECSCTTTT-TTCSEEEEEETTEEEEEECH
T ss_pred h-CCCEE----EEEcccHHHH-HhCCEEEEeeCCeeeccCCH
Confidence 4 58999 9999999966 67999999999998876654
No 57
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.89 E-value=3e-24 Score=201.06 Aligned_cols=159 Identities=15% Similarity=0.120 Sum_probs=108.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhc---------c
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELI---------S 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~---------~ 58 (175)
+||.+||+||||||||||+++|.|+++|++|+|.+||.|+.. +.+++++ .-+.++++ .
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~s 1183 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVT 1183 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCC
Confidence 499999999999999999999999999999999999988643 1222222 12334432 1
Q ss_pred ---HHHHHHHhCCCC------C-Cchhh----hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHH
Q 030549 59 ---LEDVMEELGLGP------N-GGLIY----CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 ---~~~~~~~~~l~~------~-~~~~~----~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..++++..++.. . ..... ..-+.+|+|+..|||++.+ +|++||||||+...+...-..+.+.|+
T Consensus 1184 d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr--~~~ILiLDEaTSaLD~~tE~~Iq~~l~ 1261 (1321)
T 4f4c_A 1184 MAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVR--NPKILLLDEATSALDTESEKVVQEALD 1261 (1321)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHS--CCSEEEEESCCCSTTSHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHh--CCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 122333222210 0 00000 0123459999999999999 999999999954444443444445555
Q ss_pred HHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030549 125 HLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 125 ~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++ .+++|+ ++++|++..+. .+|++++|+.|.++=+++
T Consensus 1262 ~~-~~~~Tv----I~IAHRLsTi~-~aD~I~Vld~G~IvE~Gt 1298 (1321)
T 4f4c_A 1262 RA-REGRTC----IVIAHRLNTVM-NADCIAVVSNGTIIEKGT 1298 (1321)
T ss_dssp TT-SSSSEE----EEECSSSSTTT-TCSEEEEESSSSEEEEEC
T ss_pred HH-cCCCEE----EEeccCHHHHH-hCCEEEEEECCEEEEECC
Confidence 43 358999 99999999875 579999999998775544
No 58
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.89 E-value=1.1e-24 Score=167.42 Aligned_cols=135 Identities=14% Similarity=0.142 Sum_probs=81.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEee--cCc--ccccCCCCccCCcchhc-cH-HHHHHHhCCCCCCch
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN--LDP--AAENFDYPVAMDIRELI-SL-EDVMEELGLGPNGGL 74 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g--~~~--~~~~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~ 74 (175)
+||+++|+||||||||||+|+|+|+ +|++|+|.... .+. ....+++.+. +..+++ .. ....+.+.-......
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q-~~~enl~~~~~~~~~~~~~~~~~~~ 98 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPG-TLNEKIDPYLRPLHDALRDMVEPEV 98 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC-------CTTTHHHHHHHTTTSCTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecC-CHHHHHHHHHHHHHHHHHHhccHHH
Confidence 4899999999999999999999999 99999995421 111 1234556553 223333 11 111222211001000
Q ss_pred hh-hHH-HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhc
Q 030549 75 IY-CME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRT 149 (175)
Q Consensus 75 ~~-~~~-~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~ 149 (175)
.. ..+ .+.|+||..+++++.. +|++++||||+.. ....+.++++++ ++|.|| + +||+++++..
T Consensus 99 ~~~~l~~glGq~qrv~lAraL~~--~p~lllLDEPts~----~~~~l~~~l~~l-~~g~ti----i-vtHd~~~~~~ 163 (208)
T 3b85_A 99 IPKLMEAGIVEVAPLAYMRGRTL--NDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKM----V-VTGDITQVDL 163 (208)
T ss_dssp HHHHHHTTSEEEEEGGGGTTCCB--CSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEE----E-EEEC------
T ss_pred HHHHHHhCCchHHHHHHHHHHhc--CCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEE----E-EECCHHHHhC
Confidence 00 000 1246788899999999 9999999999444 455666677777 568888 8 9999988765
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.88 E-value=3.1e-23 Score=188.12 Aligned_cols=151 Identities=14% Similarity=0.150 Sum_probs=101.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc-cCc--cccceeEEeecCcccccC-CCCccCCcchhc---------cHHHHHHHhC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYR-HCE--TVRRTMHIVNLDPAAENF-DYPVAMDIRELI---------SLEDVMEELG 67 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~g-l~~--~~~G~I~i~g~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~ 67 (175)
+|++++|+||||||||||+|+|+| .+. +..+.+.+ ++- .++. ...+.+++.+++ ...++++.++
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~-~~v--~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lg 536 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT-VYV--EHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFG 536 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCE-EET--TCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeE-EEE--cccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcC
Confidence 599999999999999999999995 220 00011100 000 0111 112222333322 1345667777
Q ss_pred CCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhh
Q 030549 68 LGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIR 146 (175)
Q Consensus 68 l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~ 146 (175)
+... .......-+.+|+||..|++++.. +|++||||||+...+..++..+.++|++ +|.|| +++||++++
T Consensus 537 L~~~~~~~~~~~LSGGqkQRvaLArAL~~--~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tv----IivSHdl~~ 607 (986)
T 2iw3_A 537 FTDEMIAMPISALSGGWKMKLALARAVLR--NADILLLDEPTNHLDTVNVAWLVNYLNT---CGITS----ITISHDSVF 607 (986)
T ss_dssp CCHHHHHSBGGGCCHHHHHHHHHHHHHHT--TCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEE----EEECSCHHH
T ss_pred CChhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEE----EEEECCHHH
Confidence 6421 111112223459999999999999 9999999999666666666677777766 58899 999999999
Q ss_pred hhcCCCceeEeccchhh
Q 030549 147 FRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 147 ~~~~~~~~~~~~~~~~~ 163 (175)
+.++||+++++..+..+
T Consensus 608 l~~~adrii~L~~G~iv 624 (986)
T 2iw3_A 608 LDNVCEYIINYEGLKLR 624 (986)
T ss_dssp HHHHCSEEEEEETTEEE
T ss_pred HHHhCCEEEEEECCeee
Confidence 99999999999988764
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.87 E-value=1.9e-22 Score=178.09 Aligned_cols=79 Identities=15% Similarity=0.067 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhhccCCC---CEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeE
Q 030549 80 HLEDNLDDWLAEELDNYLDD---DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVC 156 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p---~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~ 156 (175)
+..|+||..|+++++. +| ++|+||||+...+......+.+++++++++|.|| +++||+++.+ ..||++++
T Consensus 545 SgG~~qrv~iAraL~~--~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tv----i~vtHd~~~~-~~~d~i~~ 617 (670)
T 3ux8_A 545 SGGEAQRVKLAAELHR--RSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTV----LVIEHNLDVI-KTADYIID 617 (670)
T ss_dssp CHHHHHHHHHHHHHHS--CCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE----EEECCCHHHH-TTCSEEEE
T ss_pred CHHHHHHHHHHHHHhh--CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEE----EEEeCCHHHH-HhCCEEEE
Confidence 3449999999999987 76 5999999966666667778888999998889999 9999999987 56999999
Q ss_pred e------ccchhhHH
Q 030549 157 F------CCTHTVVQ 165 (175)
Q Consensus 157 ~------~~~~~~~~ 165 (175)
| ..|..+.+
T Consensus 618 l~~~~g~~~G~i~~~ 632 (670)
T 3ux8_A 618 LGPEGGDRGGQIVAV 632 (670)
T ss_dssp EESSSGGGCCEEEEE
T ss_pred ecCCcCCCCCEEEEe
Confidence 9 66665543
No 61
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.86 E-value=1.7e-23 Score=155.63 Aligned_cols=129 Identities=13% Similarity=0.094 Sum_probs=77.8
Q ss_pred CCeEEEEECCCCCcHHHHHHH------------HHccCccccceeEEeecCcccccCCCCccCCcchhcc-HHHHHHHhC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSS------------LYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS-LEDVMEELG 67 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~------------i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 67 (175)
+||+++|+||||||||||+|+ +.|+..++.|.+.+.+. ..+... ........+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~g 73 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGA--------------AFDVLHYIVSKRLQLG 73 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHH--------------HHHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHH--------------HHHHHHHHHHHHHhCC
Confidence 599999999999999999995 44444333332221110 000000 001111112
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccc----------------cchHHHHHHHHHHhCCC
Q 030549 68 LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFT----------------HVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 68 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~----------------~~~~~~~~l~~l~~~g~ 131 (175)
...... .....+-.++|+..+++++.. +|++++||||....+.. ....+.+++++++++|.
T Consensus 74 ~~~~~~-~~~~~s~g~~qrv~iAral~~--~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~ 150 (171)
T 4gp7_A 74 KLTVVD-ATNVQESARKPLIEMAKDYHC--FPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGF 150 (171)
T ss_dssp CCEEEE-SCCCSHHHHHHHHHHHHHTTC--EEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTC
T ss_pred CeEEEE-CCCCCHHHHHHHHHHHHHcCC--cEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCC
Confidence 111100 001123347888999999999 99999999993332222 22445667777776799
Q ss_pred cEEEEEeeeccchhhhhcC
Q 030549 132 NVCAVYLLDSQVCIRFRTL 150 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~ 150 (175)
|+ +++||+++++...
T Consensus 151 tv----i~vtH~~~~~~~~ 165 (171)
T 4gp7_A 151 RY----VYILNSPEEVEEV 165 (171)
T ss_dssp SE----EEEECSHHHHHHE
T ss_pred cE----EEEeCCHHHhhhh
Confidence 99 9999999998754
No 62
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.2e-22 Score=172.49 Aligned_cols=147 Identities=14% Similarity=0.058 Sum_probs=96.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccc-e-eEEeecCcccccCCCCcc----------CCcchhcc----------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRR-T-MHIVNLDPAAENFDYPVA----------MDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G-~-I~i~g~~~~~~~~~~~~~----------~~~~~~~~---------- 58 (175)
+|++++|+||||||||||+|+|+|+.+|++| + |.++|. + .+.+++.+. +++.+++.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~-~-~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~ 214 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD-P-QQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATL 214 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC-T-TSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC-c-cCCeeeeccchhhcccccccchhhhhcccccccCcch
Confidence 4999999999999999999999999999999 9 999883 2 223333331 11111110
Q ss_pred ---HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHH--hhccCCCCE----EEEeC-CCcccccccchHHHHHHHHH
Q 030549 59 ---LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEE--LDNYLDDDY----LVFDC-PGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ---~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~--l~~~~~p~l----liLDE-P~~~~~~~~~~~~~~~l~~l 126 (175)
...+++.+++.... . ...++ ++||.+++++ +.. +|++ +|||| |....+.. .+.+.+++
T Consensus 215 ~~~~~~ll~~~gl~~~~--~--~~~LSgGq~qrlalAra~rL~~--~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~--- 284 (460)
T 2npi_A 215 LHNKQPMVKNFGLERIN--E--NKDLYLECISQLGQVVGQRLHL--DPQVRRSGCIVDTPSISQLDEN-LAELHHII--- 284 (460)
T ss_dssp SCCBCCEECCCCSSSGG--G--CHHHHHHHHHHHHHHHHHHHHH--CHHHHHSCEEEECCCGGGSCSS-CHHHHHHH---
T ss_pred HHHHHHHHHHhCCCccc--c--hhhhhHHHHHHHHHHHHHHhcc--CcccCcceEEEeCCcccccChh-HHHHHHHH---
Confidence 00011111221111 1 23344 8899999999 999 9999 99999 83332222 33333333
Q ss_pred HhCCCcEEEEEeeeccchh------hhhcCCCc-----eeEec-cchhh
Q 030549 127 KSRNFNVCAVYLLDSQVCI------RFRTLPPC-----IVCFC-CTHTV 163 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~------~~~~~~~~-----~~~~~-~~~~~ 163 (175)
++.+.|+ ++++|+.+ ++.+++|+ +++|. .|..+
T Consensus 285 ~~~~~tv----iiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 285 EKLNVNI----MLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp HHTTCCE----EEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred HHhCCCE----EEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence 3347888 88999877 78899999 99998 66544
No 63
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.83 E-value=4.2e-21 Score=149.03 Aligned_cols=149 Identities=15% Similarity=0.113 Sum_probs=84.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH--ccCccccceeEEeecCccc------ccCCCCcc-------CCcchhccHHHHHHH
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLY--RHCETVRRTMHIVNLDPAA------ENFDYPVA-------MDIRELISLEDVMEE 65 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~--gl~~~~~G~I~i~g~~~~~------~~~~~~~~-------~~~~~~~~~~~~~~~ 65 (175)
+|++++|+||||||||||+++|+ |+.++.+|.+.+.+..... +..++.+. ++..+.+.. ...
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~ 105 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSS---VVG 105 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----------
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccc---ccc
Confidence 59999999999999999999999 7656777778877655321 12232220 011111110 000
Q ss_pred hCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccc-----cccchHHHHHHHHHHhCCCcEEEEEeee
Q 030549 66 LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIEL-----FTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (175)
Q Consensus 66 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~-----~~~~~~~~~~l~~l~~~g~tvli~~l~~ 140 (175)
.... ..........+.+..+......-.. +|+++++|||+.... ......+.++++.++++|.|| +++
T Consensus 106 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~--~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~ti----i~v 178 (251)
T 2ehv_A 106 LPSE-EKFVLEDRFNVDNFLRYIYRVVKAI--NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTT----ILT 178 (251)
T ss_dssp -------------CCHHHHHHHHHHHHHHT--TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEE----EEE
T ss_pred cccc-cceeccCcccHHHHHHHHHHHHHhh--CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeE----EEE
Confidence 0000 0000000001122222222222234 999999999933322 333445777888888889999 999
Q ss_pred ccchhhh---------hcCC-CceeEecc
Q 030549 141 SQVCIRF---------RTLP-PCIVCFCC 159 (175)
Q Consensus 141 sH~~~~~---------~~~~-~~~~~~~~ 159 (175)
||+++++ +.+| |+++++..
T Consensus 179 tH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 179 TEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp ECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred ECCCCCCcccccccChhhEeeeEEEEEee
Confidence 9999998 7888 99999964
No 64
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.83 E-value=5.3e-21 Score=171.80 Aligned_cols=91 Identities=19% Similarity=0.075 Sum_probs=71.8
Q ss_pred HHHHHHhCCCCCC-chhhhHHHHHHHHHHHHHHHhhccCC---CCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEE
Q 030549 60 EDVMEELGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLD---DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCA 135 (175)
Q Consensus 60 ~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~---p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli 135 (175)
.++++.+++.... ......-+..++||..|++++.. + |+++|||||+...+....+.+.+++++++++|.||
T Consensus 711 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tV-- 786 (842)
T 2vf7_A 711 LDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRR--SGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTV-- 786 (842)
T ss_dssp HHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSS--CCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE--
T ss_pred HHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHh--CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE--
Confidence 3456666765421 12222223449999999999998 7 69999999977777777788888999998889999
Q ss_pred EEeeeccchhhhhcCCCceeEe
Q 030549 136 VYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 136 ~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
+++||+++++ ..||+++.|
T Consensus 787 --IvisHdl~~i-~~aDrii~L 805 (842)
T 2vf7_A 787 --IAVEHKMQVV-AASDWVLDI 805 (842)
T ss_dssp --EEECCCHHHH-TTCSEEEEE
T ss_pred --EEEcCCHHHH-HhCCEEEEE
Confidence 9999999999 789999999
No 65
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.83 E-value=1.6e-21 Score=159.24 Aligned_cols=122 Identities=19% Similarity=0.185 Sum_probs=91.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHH
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (175)
+|++++|+||||||||||+++|+|+++|++|.|.++|.+.. ......+....+. +
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~----~~~~~~~~i~~~~----------g----------- 224 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI----VFKHHKNYTQLFF----------G----------- 224 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCC----CCSSCSSEEEEEC----------B-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecc----ccccchhEEEEEe----------C-----------
Confidence 38999999999999999999999999999999999986421 1100001000110 0
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccc
Q 030549 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
-.++++..+++++.. +|+++++|||...++ .+.++.+...+.|+ ++++|..+ +.+.+++++.++.+
T Consensus 225 gg~~~r~~la~aL~~--~p~ilildE~~~~e~-------~~~l~~~~~g~~tv----i~t~H~~~-~~~~~dri~~l~~g 290 (330)
T 2pt7_A 225 GNITSADCLKSCLRM--RPDRIILGELRSSEA-------YDFYNVLCSGHKGT----LTTLHAGS-SEEAFIRLANMSSS 290 (330)
T ss_dssp TTBCHHHHHHHHTTS--CCSEEEECCCCSTHH-------HHHHHHHHTTCCCE----EEEEECSS-HHHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHhhh--CCCEEEEcCCChHHH-------HHHHHHHhcCCCEE----EEEEcccH-HHHHhhhheehhcC
Confidence 235778899999999 999999999944333 34788876545579 99999988 88899999999877
Q ss_pred h
Q 030549 161 H 161 (175)
Q Consensus 161 ~ 161 (175)
.
T Consensus 291 ~ 291 (330)
T 2pt7_A 291 N 291 (330)
T ss_dssp S
T ss_pred C
Confidence 6
No 66
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.82 E-value=2.4e-22 Score=153.46 Aligned_cols=150 Identities=11% Similarity=-0.010 Sum_probs=83.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc---cccCCCCccCCcchhccHHHHHHHhCCC----CC-C
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---AENFDYPVAMDIRELISLEDVMEELGLG----PN-G 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~-~ 72 (175)
+||+++|+||||||||||+|+|+|+++...+.+.+.+.++. .+.+++.+ +....+...++.+++... .. .
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~--q~~~~~~~~~~~~~l~~~~~~~~n~~ 96 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHF--IDPTRFQQLIDQGELLEWAEIHGGLH 96 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEE--CCHHHHHHHHHTTCEEEEEEEGGGTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEe--cCHHHHHHHHhcCCceeehhhcCchh
Confidence 59999999999999999999999999643333333332221 12334443 222223222222222100 00 0
Q ss_pred chhhhHHHHHHH------------------HHHHHHH---HhhccCCCCEEEEeCCCccc----ccccchHHHHHHHHHH
Q 030549 73 GLIYCMEHLEDN------------------LDDWLAE---ELDNYLDDDYLVFDCPGQIE----LFTHVPVLRNFVDHLK 127 (175)
Q Consensus 73 ~~~~~~~~~~~~------------------~~~~l~~---~l~~~~~p~lliLDEP~~~~----~~~~~~~~~~~l~~l~ 127 (175)
..........++ ++..... ++. .+|++++||||.... +...+..+++++++++
T Consensus 97 ~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~--~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~ 174 (207)
T 1znw_A 97 RSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFL--APPSWQDLQARLIGRGTETADVIQRRLDTARIELA 174 (207)
T ss_dssp EEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEE--ECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEE--ECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 000000011111 1111111 233 389999999992221 2223456677888886
Q ss_pred -hCCCcEEEEEeeeccchhhhhcCCCceeEec
Q 030549 128 -SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFC 158 (175)
Q Consensus 128 -~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~ 158 (175)
++|.|+ +++||+++++..+|++++++.
T Consensus 175 ~~~g~tv----i~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 175 AQGDFDK----VVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp GGGGSSE----EEECSSHHHHHHHHHHHHC--
T ss_pred hhccCcE----EEECCCHHHHHHHHHHHHHhc
Confidence 458999 999999999999999999884
No 67
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.81 E-value=1e-19 Score=146.93 Aligned_cols=147 Identities=14% Similarity=0.093 Sum_probs=97.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------------ccCCCCccCCcch-hccHHHHHHHh
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRE-LISLEDVMEEL 66 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------------~~~~~~~~~~~~~-~~~~~~~~~~~ 66 (175)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.+.+ +... .++..++.+++
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~--q~~~~~~~~~~v~e~l 176 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVV--AEGDKAKAATVLSKAV 176 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEEC--CC--CCCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEE--ecCCccCHHHHHHHHH
Confidence 489999999999999999999999999999999999987532 1233333 2112 22222222221
Q ss_pred CC--------------CCCCchhhhHHHHHHHHHHHHHHHhhccCCCC--EEEEeCCCcccccccchHHHHHHHHHH-hC
Q 030549 67 GL--------------GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQIELFTHVPVLRNFVDHLK-SR 129 (175)
Q Consensus 67 ~l--------------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~--lliLDEP~~~~~~~~~~~~~~~l~~l~-~~ 129 (175)
.+ +..........+++ +|+..+++++.. +|+ +++|| | ..+.+... .+++++ +.
T Consensus 177 ~~~~~~~~d~~lldt~gl~~~~~~~~~eLS-kqr~~iaral~~--~P~e~lLvLD-p-----tsglD~~~-~~~~~~~~~ 246 (302)
T 3b9q_A 177 KRGKEEGYDVVLCDTSGRLHTNYSLMEELI-ACKKAVGKIVSG--APNEILLVLD-G-----NTGLNMLP-QAREFNEVV 246 (302)
T ss_dssp HHHHHTTCSEEEECCCCCSSCCHHHHHHHH-HHHHHHHTTSTT--CCSEEEEEEE-G-----GGGGGGHH-HHHHHHHHT
T ss_pred HHHHHcCCcchHHhcCCCCcchhHHHHHHH-HHHHHHHHhhcc--CCCeeEEEEe-C-----CCCcCHHH-HHHHHHHhc
Confidence 10 00111122345566 788899999999 999 99999 9 44444443 346665 45
Q ss_pred CCcEEEEEeeecc---------chhhhhcCCCceeEeccchhh
Q 030549 130 NFNVCAVYLLDSQ---------VCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 130 g~tvli~~l~~sH---------~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|.|+ +++|| .+..+......+.++..|..+
T Consensus 247 g~t~----iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 247 GITG----LILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp CCCE----EEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCCE----EEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 8999 99999 444455555677888877664
No 68
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.81 E-value=1.7e-20 Score=156.34 Aligned_cols=75 Identities=12% Similarity=-0.131 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhhccCCC--CEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEe
Q 030549 80 HLEDNLDDWLAEELDNYLDD--DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p--~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
+..++++..|++++.. +| ++||||||+..........+.++|++++ +|.|| +++||+++.+ ..||+++++
T Consensus 297 SgGe~qrl~lA~~l~~--~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~v----i~itH~~~~~-~~~d~i~~l 368 (415)
T 4aby_A 297 SGGELSRVMLAVSTVL--GADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQV----LVVTHLAQIA-ARAHHHYKV 368 (415)
T ss_dssp CHHHHHHHHHHHHHHH--CCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEE----EEECSCHHHH-TTCSEEEEE
T ss_pred CHhHHHHHHHHHHHHh--CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEE----EEEeCcHHHH-hhcCeEEEE
Confidence 4458999999999999 99 9999999977666777778888999987 58999 9999999665 689999999
Q ss_pred ----ccchh
Q 030549 158 ----CCTHT 162 (175)
Q Consensus 158 ----~~~~~ 162 (175)
..|.+
T Consensus 369 ~k~~~~G~~ 377 (415)
T 4aby_A 369 EKQVEDGRT 377 (415)
T ss_dssp EEEEETTEE
T ss_pred EEeccCCce
Confidence 66543
No 69
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.80 E-value=9.4e-20 Score=164.71 Aligned_cols=90 Identities=17% Similarity=0.121 Sum_probs=70.5
Q ss_pred HHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCC---CEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEE
Q 030549 61 DVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDD---DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (175)
Q Consensus 61 ~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p---~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~ 136 (175)
++++.+++.. ........-+..++||..|++++.. +| +++|||||+...+......+.++|++++++|.||
T Consensus 827 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TV--- 901 (972)
T 2r6f_A 827 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHR--RSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTV--- 901 (972)
T ss_dssp HHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSS--CCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE---
T ss_pred HHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhc--CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE---
Confidence 4566677654 2222222233459999999999997 65 9999999977777777778888999998889999
Q ss_pred EeeeccchhhhhcCCCceeEe
Q 030549 137 YLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 137 ~l~~sH~~~~~~~~~~~~~~~ 157 (175)
+++||+++++ ..||++++|
T Consensus 902 -IvisHdl~~i-~~aDrIivL 920 (972)
T 2r6f_A 902 -LVIEHNLDVI-KTADYIIDL 920 (972)
T ss_dssp -EEECCCHHHH-TTCSEEEEE
T ss_pred -EEEcCCHHHH-HhCCEEEEE
Confidence 9999999987 579999999
No 70
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.79 E-value=7.6e-20 Score=140.25 Aligned_cols=153 Identities=14% Similarity=0.055 Sum_probs=83.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-------ccceeEEeecCccc-ccCCCCccCCcchhccHHHHHHHhCCCCCC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-------VRRTMHIVNLDPAA-ENFDYPVAMDIRELISLEDVMEELGLGPNG 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-------~~G~I~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 72 (175)
+|++++|+||||||||||+++|+|...+ ..|.+++++.+... ..+.+.+ +.. .+...++.+++.+....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~--~~~-~~~~~~~~~~~~~~~~~ 100 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIA--QNR-GLDPDEVLKHIYVARAF 100 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHH--HHT-TSCHHHHHHTEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHH--HHc-CCCHHHHhhcEEEEecC
Confidence 5999999999999999999999996554 34467777654211 1111111 000 01123566665443322
Q ss_pred chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCccccc--------cc----chHHHHHHHHHH-hCCCcEEEEEee
Q 030549 73 GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELF--------TH----VPVLRNFVDHLK-SRNFNVCAVYLL 139 (175)
Q Consensus 73 ~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~--------~~----~~~~~~~l~~l~-~~g~tvli~~l~ 139 (175)
... ......+.....+.+.+....+|+++++|||+..... .. ...+...+.+++ +.|.|| ++
T Consensus 101 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tv----i~ 175 (231)
T 4a74_A 101 NSN-HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAV----FV 175 (231)
T ss_dssp SHH-HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEE----EE
T ss_pred ChH-HHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeE----EE
Confidence 111 1111112233333333311239999999999333111 00 113344555553 459999 99
Q ss_pred eccchhh----hhcCCCceeEeccch
Q 030549 140 DSQVCIR----FRTLPPCIVCFCCTH 161 (175)
Q Consensus 140 ~sH~~~~----~~~~~~~~~~~~~~~ 161 (175)
+||...+ +...+|+++.+..+.
T Consensus 176 vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 176 TNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp EEECC---------CCSEEEEEEECT
T ss_pred EeecccCcchhhHhhceEEEEEEecC
Confidence 9996665 889999999988753
No 71
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.79 E-value=6.7e-19 Score=145.09 Aligned_cols=147 Identities=14% Similarity=0.093 Sum_probs=97.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------------ccCCCCccCCcch-hccHHHHHHHh
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRE-LISLEDVMEEL 66 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------------~~~~~~~~~~~~~-~~~~~~~~~~~ 66 (175)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.+.+ +... ..+..++.+++
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~--q~~~~~~p~~tv~e~l 233 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVV--AEGDKAKAATVLSKAV 233 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEEC--CSSSSCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEE--ecccccChhhhHHHHH
Confidence 489999999999999999999999999999999999987532 1233333 2112 22222222222
Q ss_pred CC--------------CCCCchhhhHHHHHHHHHHHHHHHhhccCCCC--EEEEeCCCcccccccchHHHHHHHHHH-hC
Q 030549 67 GL--------------GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQIELFTHVPVLRNFVDHLK-SR 129 (175)
Q Consensus 67 ~l--------------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~--lliLDEP~~~~~~~~~~~~~~~l~~l~-~~ 129 (175)
.+ +..........+++ +++..+++++.. +|+ +++|| | ..+.+... .+++++ +.
T Consensus 234 ~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS-kqr~~iaral~~--~P~e~lLvLD-p-----ttglD~~~-~~~~~~~~~ 303 (359)
T 2og2_A 234 KRGKEEGYDVVLCDTSGRLHTNYSLMEELI-ACKKAVGKIVSG--APNEILLVLD-G-----NTGLNMLP-QAREFNEVV 303 (359)
T ss_dssp HHHHHTTCSEEEEECCCCSSCCHHHHHHHH-HHHHHHHHHSTT--CCSEEEEEEE-G-----GGGGGGHH-HHHHHHHHT
T ss_pred HHHHhCCCHHHHHHhcCCChhhhhHHHHHH-HHHHHHHHHHhc--CCCceEEEEc-C-----CCCCCHHH-HHHHHHHhc
Confidence 10 01111122335566 788999999999 999 99999 9 44444443 345665 45
Q ss_pred CCcEEEEEeeecc---------chhhhhcCCCceeEeccchhh
Q 030549 130 NFNVCAVYLLDSQ---------VCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 130 g~tvli~~l~~sH---------~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|.|+ +++|| .+..+......+.++..|..+
T Consensus 304 g~t~----iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 304 GITG----LILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp CCCE----EEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCeE----EEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 8999 99999 344444555677777777653
No 72
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.79 E-value=9.8e-20 Score=165.02 Aligned_cols=90 Identities=18% Similarity=0.142 Sum_probs=69.2
Q ss_pred HHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCC---CEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEE
Q 030549 61 DVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDD---DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (175)
Q Consensus 61 ~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p---~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~ 136 (175)
++++.+++.. ........-+..++||..|++++.. +| +++|||||+...+......+.++|++++++|.||
T Consensus 845 ~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TV--- 919 (993)
T 2ygr_A 845 RTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQK--RSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTV--- 919 (993)
T ss_dssp HHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSS--CCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE---
T ss_pred HHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHh--CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE---
Confidence 3455566543 1112222223449999999999997 65 9999999977777777778888999998889999
Q ss_pred EeeeccchhhhhcCCCceeEe
Q 030549 137 YLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 137 ~l~~sH~~~~~~~~~~~~~~~ 157 (175)
+++||+++++ ..||+++.|
T Consensus 920 -IvisHdl~~i-~~aDrIivL 938 (993)
T 2ygr_A 920 -IVIEHNLDVI-KTSDWIIDL 938 (993)
T ss_dssp -EEECCCHHHH-TTCSEEEEE
T ss_pred -EEEcCCHHHH-HhCCEEEEE
Confidence 9999999987 579999999
No 73
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.79 E-value=1e-19 Score=164.67 Aligned_cols=99 Identities=20% Similarity=0.157 Sum_probs=73.2
Q ss_pred HHHHHhCCCCCC-chhhhHHHHHHHHHHHHHHHhhccCCC---CEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEE
Q 030549 61 DVMEELGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDD---DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (175)
Q Consensus 61 ~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~p---~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~ 136 (175)
++++.++++... ......-+..|+||..||+++.. +| +++|||||+..........+.++|++++++|.||
T Consensus 787 ~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~--~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TV--- 861 (916)
T 3pih_A 787 QVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRK--RDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTV--- 861 (916)
T ss_dssp HHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTS--CCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE---
T ss_pred HHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhh--CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEE---
Confidence 455556664321 11111223459999999999987 65 7999999977766777778888999998889999
Q ss_pred EeeeccchhhhhcCCCceeEe------ccchhhHHh
Q 030549 137 YLLDSQVCIRFRTLPPCIVCF------CCTHTVVQR 166 (175)
Q Consensus 137 ~l~~sH~~~~~~~~~~~~~~~------~~~~~~~~~ 166 (175)
+++||+++.+.. ||+++.| ..|..+-++
T Consensus 862 -IvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~G 895 (916)
T 3pih_A 862 -IVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATG 895 (916)
T ss_dssp -EEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEE
T ss_pred -EEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEc
Confidence 999999998755 9999999 566555443
No 74
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.79 E-value=1.1e-20 Score=141.77 Aligned_cols=134 Identities=12% Similarity=0.121 Sum_probs=74.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccC-CcchhccHHHHHHHhCCCCC--Cc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAM-DIRELISLEDVMEELGLGPN--GG 73 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~--~~ 73 (175)
.++|+||||||||||+|+|+|+++ |.++|.+... ..+++.+.- +..+.+ +..+.+... ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~-----~~~~~~~~~~~~~ 71 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI-----FSSKFFTSKKLVG 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETTCCEEE-----EEETTCCCSSEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCcHHHHH-----HHhhcCCcccccc
Confidence 589999999999999999999985 4445543211 112222100 110111 011111110 01
Q ss_pred hhhhHHHHHHHHHHHHHHH-----hhccCCCCEEEEeC--CCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhh
Q 030549 74 LIYCMEHLEDNLDDWLAEE-----LDNYLDDDYLVFDC--PGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIR 146 (175)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~-----l~~~~~p~lliLDE--P~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~ 146 (175)
.....-+..++++..++++ +.. +|++++||| |.........+.+.++ +.+.+.|++++ .|.+|+...
T Consensus 72 ~~~~~lSgG~~qr~~la~aa~~~~l~~--~p~llilDEigp~~~ld~~~~~~l~~~---l~~~~~~~i~~-~H~~h~~~~ 145 (178)
T 1ye8_A 72 SYGVNVQYFEELAIPILERAYREAKKD--RRKVIIIDEIGKMELFSKKFRDLVRQI---MHDPNVNVVAT-IPIRDVHPL 145 (178)
T ss_dssp TEEECHHHHHHHHHHHHHHHHHHHHHC--TTCEEEECCCSTTGGGCHHHHHHHHHH---HTCTTSEEEEE-CCSSCCSHH
T ss_pred ccccCcCHHHHHHHHHHhhcccccccc--CCCEEEEeCCCCcccCCHHHHHHHHHH---HhcCCCeEEEE-EccCCCchH
Confidence 1111123348899999996 888 999999999 9443333322222222 33345556222 334578889
Q ss_pred hhcCCCc
Q 030549 147 FRTLPPC 153 (175)
Q Consensus 147 ~~~~~~~ 153 (175)
+..++++
T Consensus 146 ~~~i~~r 152 (178)
T 1ye8_A 146 VKEIRRL 152 (178)
T ss_dssp HHHHHTC
T ss_pred HHHHHhc
Confidence 8888876
No 75
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.78 E-value=1.5e-19 Score=143.05 Aligned_cols=124 Identities=18% Similarity=0.135 Sum_probs=86.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccc-cceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHH
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~-~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+|++++|+||||||||||+++|+|+++|+ +|+|.++|.++. +.+. .....+.. ..+++..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~-----~~~~-~~~~~v~q----~~~gl~~--------- 84 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-----YVFK-HKKSIVNQ----REVGEDT--------- 84 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC-----SCCC-CSSSEEEE----EEBTTTB---------
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce-----eecC-CcceeeeH----HHhCCCH---------
Confidence 48999999999999999999999999998 999999987642 1110 00000000 0111111
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEecc
Q 030549 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
..++..+++++.. +|+++++|||. + .+.....++.. +.|.+| ++++|+.+ +...+++++.+..
T Consensus 85 ---~~l~~~la~aL~~--~p~illlDEp~-----D-~~~~~~~l~~~-~~g~~v----l~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 85 ---KSFADALRAALRE--DPDVIFVGEMR-----D-LETVETALRAA-ETGHLV----FGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp ---SCHHHHHHHHHHH--CCSEEEESCCC-----S-HHHHHHHHHHH-HTTCEE----EEEECCSS-HHHHHHHHHHTSC
T ss_pred ---HHHHHHHHHHHhh--CCCEEEeCCCC-----C-HHHHHHHHHHH-ccCCEE----EEEeCcch-HHHHHHHHhhhcC
Confidence 1125788999999 99999999994 1 12233345543 568999 99999976 6788898888876
Q ss_pred c
Q 030549 160 T 160 (175)
Q Consensus 160 ~ 160 (175)
.
T Consensus 148 ~ 148 (261)
T 2eyu_A 148 L 148 (261)
T ss_dssp G
T ss_pred c
Confidence 4
No 76
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.77 E-value=1.3e-20 Score=157.84 Aligned_cols=146 Identities=13% Similarity=0.039 Sum_probs=97.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccccc----CCCCccCCcchh-------ccHHHHHHHhCCCCCC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAEN----FDYPVAMDIREL-------ISLEDVMEELGLGPNG 72 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~----~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~ 72 (175)
+++|+||||||||||+|+|+|+.+|++|+|.++|.+..... ....+.++..++ ....++++.+++....
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~ 150 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYD 150 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCccC
Confidence 99999999999999999999999999999999886532110 011112222222 2256677777665432
Q ss_pred chhhhHHHHH--HHHHHHHHHHhhc--------cCCCCEEEEeCCCcccccccchHHHHHHHHHH-----hCC----CcE
Q 030549 73 GLIYCMEHLE--DNLDDWLAEELDN--------YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-----SRN----FNV 133 (175)
Q Consensus 73 ~~~~~~~~~~--~~~~~~l~~~l~~--------~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-----~~g----~tv 133 (175)
... . -+.+ ++++..+++++.. ..+|+++++|||....+...++.+.+.++++. +.| .++
T Consensus 151 ~~~-~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~ii 228 (413)
T 1tq4_A 151 FFI-I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIF 228 (413)
T ss_dssp EEE-E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEE
T ss_pred CeE-E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 111 1 1223 6788888887776 24889999999955555555666777777763 332 446
Q ss_pred EEEEeeeccchhh--hhcCCCcee
Q 030549 134 CAVYLLDSQVCIR--FRTLPPCIV 155 (175)
Q Consensus 134 li~~l~~sH~~~~--~~~~~~~~~ 155 (175)
+++||.+++ ++++++++.
T Consensus 229 ----liSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 229 ----LLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp ----ECCTTCTTSTTHHHHHHHHH
T ss_pred ----EEecCcCCccCHHHHHHHHH
Confidence 889999987 888888663
No 77
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.76 E-value=7e-18 Score=136.93 Aligned_cols=75 Identities=7% Similarity=-0.092 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhhc--cCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCce--eE
Q 030549 81 LEDNLDDWLAEELDN--YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCI--VC 156 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~--~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~--~~ 156 (175)
..++++..++++++. +.+|++++||||+...+....+.+.+++++++ ++.+| +++||+. ++.+.+|++ ++
T Consensus 222 ~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~v----i~~tH~~-~~~~~~d~~~~v~ 295 (322)
T 1e69_A 222 GGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQF----IVITHNK-IVMEAADLLHGVT 295 (322)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEE----EEECCCT-TGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeE----EEEECCH-HHHhhCceEEEEE
Confidence 348888999998762 12899999999966666666777888888874 57889 9999995 567788875 55
Q ss_pred eccch
Q 030549 157 FCCTH 161 (175)
Q Consensus 157 ~~~~~ 161 (175)
+..+.
T Consensus 296 ~~~g~ 300 (322)
T 1e69_A 296 MVNGV 300 (322)
T ss_dssp ESSSC
T ss_pred EeCCE
Confidence 65543
No 78
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.73 E-value=1.4e-18 Score=143.20 Aligned_cols=125 Identities=14% Similarity=0.054 Sum_probs=82.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccc-cceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHH
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~-~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+|++++|+||||||||||+++|+|+++|+ +|.|...+.++.. ...... ....+. ......
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~-~~~~~~--~~v~q~---------~~~~~~------- 182 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEF-VHESKK--CLVNQR---------EVHRDT------- 182 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCS-CCCCSS--SEEEEE---------EBTTTB-------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHh-hhhccc--cceeee---------eecccc-------
Confidence 47799999999999999999999999987 4555544433211 100000 000000 000000
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEecc
Q 030549 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
......+++++.+ +|+++++|||...+.. +.+.+.++.|.+| +.++|..+.+ ..++|++.+..
T Consensus 183 ---~~~~~~La~aL~~--~PdvillDEp~d~e~~-------~~~~~~~~~G~~v----l~t~H~~~~~-~~~dRli~l~~ 245 (356)
T 3jvv_A 183 ---LGFSEALRSALRE--DPDIILVGEMRDLETI-------RLALTAAETGHLV----FGTLHTTSAA-KTIDRVVDVFP 245 (356)
T ss_dssp ---SCHHHHHHHHTTS--CCSEEEESCCCSHHHH-------HHHHHHHHTTCEE----EEEESCSSHH-HHHHHHHHTSC
T ss_pred ---CCHHHHHHHHhhh--CcCEEecCCCCCHHHH-------HHHHHHHhcCCEE----EEEEccChHH-HHHHHHhhhcC
Confidence 0111278899999 9999999999432222 2555666779999 9999999877 78899998876
Q ss_pred ch
Q 030549 160 TH 161 (175)
Q Consensus 160 ~~ 161 (175)
+.
T Consensus 246 ~~ 247 (356)
T 3jvv_A 246 AE 247 (356)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 79
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.73 E-value=1.2e-18 Score=150.00 Aligned_cols=145 Identities=13% Similarity=0.138 Sum_probs=93.7
Q ss_pred CCeEEEEECCCCCcHHHHHHH--HHccCccccceeEEeecCccc------ccCCCCccCCcchh---ccHHHHHHHhCCC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSS--LYRHCETVRRTMHIVNLDPAA------ENFDYPVAMDIREL---ISLEDVMEELGLG 69 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~--i~gl~~~~~G~I~i~g~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~~~l~ 69 (175)
+|++++|+||||||||||+++ ++|+.+|++|.|+++|.+... +.+++.+ +.... +. .+...
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~--q~~~~~~~l~------~~~~~ 109 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDL--AKLVDEGKLF------ILDAS 109 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCH--HHHHHTTSEE------EEECC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCh--HHhhccCcEE------EEecC
Confidence 599999999999999999999 789999999999999987421 2334433 11100 00 00000
Q ss_pred C--CCchhhhHHHHHHHHHHHHHHHhh-ccCCCCEEEEeCCCccc-----ccccchHHHHHHHHHHhCCCcEEEEEeeec
Q 030549 70 P--NGGLIYCMEHLEDNLDDWLAEELD-NYLDDDYLVFDCPGQIE-----LFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (175)
Q Consensus 70 ~--~~~~~~~~~~~~~~~~~~l~~~l~-~~~~p~lliLDEP~~~~-----~~~~~~~~~~~l~~l~~~g~tvli~~l~~s 141 (175)
. ........-.+.... ..+...+. . +|+++++|||+... +...+..+.++++.++++|.|| +++|
T Consensus 110 ~~~~~~~~l~~~~l~~~~-~~~~~~LS~g--~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tv----l~it 182 (525)
T 1tf7_A 110 PDPEGQEVVGGFDLSALI-ERINYAIQKY--RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATT----VMTT 182 (525)
T ss_dssp CCSSCCSCCSSHHHHHHH-HHHHHHHHHH--TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEE----EEEE
T ss_pred cccchhhhhcccCHHHHH-HHHHHHHHHc--CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEE----EEEe
Confidence 0 000000011122222 22233443 4 89999999994321 2344567778899988789999 9999
Q ss_pred cchhhh---------hcCCCceeEeccc
Q 030549 142 QVCIRF---------RTLPPCIVCFCCT 160 (175)
Q Consensus 142 H~~~~~---------~~~~~~~~~~~~~ 160 (175)
|+++++ +.+||++++|..+
T Consensus 183 H~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 183 ERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp ECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred cCCCCccccccccceeeeeeEEEEEEEE
Confidence 999985 4559999999873
No 80
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.72 E-value=2e-17 Score=133.53 Aligned_cols=129 Identities=15% Similarity=0.108 Sum_probs=84.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------------ccCCCCccCCcchhccHHHHHHHh--
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRELISLEDVMEEL-- 66 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~-- 66 (175)
|++++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.+.+ +.....+...+.+++
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~--q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQ--GPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEEC--CCTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEE--eCCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999987532 1233333 211111211121111
Q ss_pred -----------CCCCCC-chhhhHHHHHHHHHHHHHHHhhccCCCC--EEEEeCCCcccccccchHHHHHHHHHHh-CCC
Q 030549 67 -----------GLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQIELFTHVPVLRNFVDHLKS-RNF 131 (175)
Q Consensus 67 -----------~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~p~--lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~ 131 (175)
+..... .......+++ +++..++|++.. +|+ ++.||..+...+.+ .++++++ .+.
T Consensus 180 ~~~~~~d~~llDt~G~~~~~~~~~~eLs-~~r~~iaRal~~--~P~~~lLvLDa~t~~~~~~-------~~~~~~~~~~~ 249 (304)
T 1rj9_A 180 MKARGYDLLFVDTAGRLHTKHNLMEELK-KVKRAIAKADPE--EPKEVWLVLDAVTGQNGLE-------QAKKFHEAVGL 249 (304)
T ss_dssp HHHHTCSEEEECCCCCCTTCHHHHHHHH-HHHHHHHHHCTT--CCSEEEEEEETTBCTHHHH-------HHHHHHHHHCC
T ss_pred HHhCCCCEEEecCCCCCCchHHHHHHHH-HHHHHHHHhhcC--CCCeEEEEEcHHHHHHHHH-------HHHHHHHHcCC
Confidence 111111 1111223444 677889999999 999 78899554444444 6777754 489
Q ss_pred cEEEEEeeeccchhh
Q 030549 132 NVCAVYLLDSQVCIR 146 (175)
Q Consensus 132 tvli~~l~~sH~~~~ 146 (175)
|+ +++||+.+.
T Consensus 250 t~----iivTh~d~~ 260 (304)
T 1rj9_A 250 TG----VIVTKLDGT 260 (304)
T ss_dssp SE----EEEECTTSS
T ss_pred cE----EEEECCccc
Confidence 99 999998543
No 81
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.72 E-value=5.9e-18 Score=145.62 Aligned_cols=148 Identities=14% Similarity=0.062 Sum_probs=99.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccce--eEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhH
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRT--MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCM 78 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~--I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (175)
+|++++|+|+||||||||+++++|..++. |+ +.+.+++...+-......+ .+...++. ..++..........
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~~~l~~~~~~~----g~~~~~~~-~~g~~~~~~~~p~~ 353 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESRAQLLRNAYSW----GMDFEEME-RQNLLKIVCAYPES 353 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCHHHHHHHHHTT----SCCHHHHH-HTTSEEECCCCGGG
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCHHHHHHHHHHc----CCCHHHHH-hCCCEEEEEecccc
Confidence 59999999999999999999999999885 65 4555554321000000000 00111211 12111111111111
Q ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccc-----cchHHHHHHHHHHhCCCcEEEEEeeeccch---------
Q 030549 79 EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFT-----HVPVLRNFVDHLKSRNFNVCAVYLLDSQVC--------- 144 (175)
Q Consensus 79 ~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~-----~~~~~~~~l~~l~~~g~tvli~~l~~sH~~--------- 144 (175)
-+..++++..+++++.. +|+++++| |....+.. .+..+.++++.++++|.|| +++||+.
T Consensus 354 LS~g~~q~~~~a~~l~~--~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tv----ilvsh~~~~~~~~~~~ 426 (525)
T 1tf7_A 354 AGLEDHLQIIKSEINDF--KPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITG----LFTNTSDQFMGAHSIT 426 (525)
T ss_dssp SCHHHHHHHHHHHHHTT--CCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEE----EEEEECSSSSCCCSSC
T ss_pred CCHHHHHHHHHHHHHhh--CCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEE----EEEECcccccCccccc
Confidence 23458899999999988 99999999 94444444 5666777888888889999 9999999
Q ss_pred -hhhhcCCCceeEeccch
Q 030549 145 -IRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 145 -~~~~~~~~~~~~~~~~~ 161 (175)
..+..+||++++|..+.
T Consensus 427 ~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 427 DSHISTITDTIILLQYVE 444 (525)
T ss_dssp SSCCTTTCSEEEEEEEEE
T ss_pred CcccceeeeEEEEEEEEE
Confidence 78889999999998765
No 82
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.72 E-value=1.1e-17 Score=138.23 Aligned_cols=75 Identities=7% Similarity=-0.142 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhh------ccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCcee
Q 030549 82 EDNLDDWLAEELD------NYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIV 155 (175)
Q Consensus 82 ~~~~~~~l~~~l~------~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~ 155 (175)
.++|+..+++++. . +|++++||||+...+....+.+.+++++++++|.|| +++||+++. ...+|+++
T Consensus 283 Ge~qr~~la~al~~~~~~~~--~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tv----i~itH~~~~-~~~~d~~~ 355 (365)
T 3qf7_A 283 GERALISISLAMSLAEVASG--RLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVI----VFITHDREF-SEAFDRKL 355 (365)
T ss_dssp HHHHHHHHHHHHHHHHHTTT--TCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEE----EEEESCHHH-HTTCSCEE
T ss_pred HHHHHHHHHHHHHhhhcccC--CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEE----EEEecchHH-HHhCCEEE
Confidence 3888899888877 6 999999999966666667777888899988789999 999999988 67899999
Q ss_pred Eeccchhh
Q 030549 156 CFCCTHTV 163 (175)
Q Consensus 156 ~~~~~~~~ 163 (175)
++..|..+
T Consensus 356 ~l~~G~i~ 363 (365)
T 3qf7_A 356 RITGGVVV 363 (365)
T ss_dssp EEETTEEC
T ss_pred EEECCEEE
Confidence 99988654
No 83
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.71 E-value=3.2e-18 Score=136.90 Aligned_cols=153 Identities=13% Similarity=0.104 Sum_probs=87.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccc-eeEEeecCcccc----cC-CC--CccCCcchhcc--------HHHHHH
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAE----NF-DY--PVAMDIRELIS--------LEDVME 64 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G-~I~i~g~~~~~~----~~-~~--~~~~~~~~~~~--------~~~~~~ 64 (175)
+|++++|+||||||||||+++|+|...|++| .|.+.+.+.... .. .. ...++..+.+. .....+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 113 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFD 113 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHH
Confidence 5999999999999999999999999999878 786655432111 00 00 00001100110 111112
Q ss_pred Hh----CCCCCCc-hhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCccc------cc-ccchHHHHHHHHHHh-CCC
Q 030549 65 EL----GLGPNGG-LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIE------LF-THVPVLRNFVDHLKS-RNF 131 (175)
Q Consensus 65 ~~----~l~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~------~~-~~~~~~~~~l~~l~~-~g~ 131 (175)
.+ .+..... .......+ +++.. ++++.. +|+++++|||.... .. .....+.+.|+++++ .|.
T Consensus 114 ~~l~~~~l~i~~~~~~~~~~~l--~~~~~-a~~~~~--~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~ 188 (296)
T 1cr0_A 114 ELFGNDTFHLYDSFAEAETDRL--LAKLA-YMRSGL--GCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGV 188 (296)
T ss_dssp HHHSSSCEEEECCCCSCCHHHH--HHHHH-HHHHTT--CCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCC
T ss_pred HHhccCCEEEECCCCCCCHHHH--HHHHH-HHHHhc--CCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 11 1110000 01111222 22222 556777 99999999994411 11 223446667777754 489
Q ss_pred cEEEEEeeeccch--h--------------------hhhcCCCceeEeccchh
Q 030549 132 NVCAVYLLDSQVC--I--------------------RFRTLPPCIVCFCCTHT 162 (175)
Q Consensus 132 tvli~~l~~sH~~--~--------------------~~~~~~~~~~~~~~~~~ 162 (175)
|| +++||+. + .++..||+++++..+..
T Consensus 189 ~v----i~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 189 VL----VVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp EE----EEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred eE----EEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 99 9999995 5 78889999999987764
No 84
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.71 E-value=3.9e-17 Score=124.89 Aligned_cols=151 Identities=13% Similarity=0.166 Sum_probs=86.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccc-------cCCCCccCCcchhcc-HHHHHHHhCCCCCC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDYPVAMDIRELIS-LEDVMEELGLGPNG 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~ 72 (175)
+|++++|+||||||||||++.+++...+.+|.+.+.+.+.... ..++.+.......+. ......... ....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 100 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKE-DQWS 100 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC-----CTTB
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccC-ceee
Confidence 5899999999999999999999998888889998877543211 112111000000000 000000000 0000
Q ss_pred chhhhHHHHHHHHHHHHHHHhhccCCCC--EEEEeCCCccc--ccccchHHHHHHHHHH-hCCCcEEEEEeeeccch---
Q 030549 73 GLIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQIE--LFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQVC--- 144 (175)
Q Consensus 73 ~~~~~~~~~~~~~~~~l~~~l~~~~~p~--lliLDEP~~~~--~~~~~~~~~~~l~~l~-~~g~tvli~~l~~sH~~--- 144 (175)
... .+..+.++...+..... +|+ ++++|||+... .......+...+++++ +.|.|| ++++|+.
T Consensus 101 ~~~---~~~~~~~~~~~~~~~~~--~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~v----i~~~h~~~~~ 171 (235)
T 2w0m_A 101 LVN---LTPEELVNKVIEAKQKL--GYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTI----YATSQYAITT 171 (235)
T ss_dssp CSS---CCHHHHHHHHHHHHHHH--CSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEE----EEEEC-----
T ss_pred ecC---CCHHHHHHHHHHHHHhh--CCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeE----EEEeccCccc
Confidence 000 02223333333334445 899 99999994332 2333455666777764 568899 9999999
Q ss_pred -----hhhhcCCCceeEeccch
Q 030549 145 -----IRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 145 -----~~~~~~~~~~~~~~~~~ 161 (175)
..++.+||+++++....
T Consensus 172 ~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 172 SQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp ------CHHHHCSEEEEEEEEE
T ss_pred ccccccchheeeeEEEEEEEEe
Confidence 55889999999998653
No 85
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.68 E-value=3.7e-19 Score=134.59 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=34.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
|++++|+||||||||||+++|+|+++ ++| |.++|++.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYT 37 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEEC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEec
Confidence 78999999999999999999999999 999 99988765
No 86
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.65 E-value=7.5e-17 Score=147.78 Aligned_cols=133 Identities=14% Similarity=0.099 Sum_probs=82.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCcccc--ceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHH
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVR--RTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~--G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
|++++|+||||||||||+|++ |++.+.. |. .-++.. ..+++.+.+. ..++....... ...
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~-----~Vpq~~-----~~l~v~d~I~-----~rig~~d~~~~--~~s 850 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGC-----YVPAEV-----CRLTPIDRVF-----TRLGASDRIMS--GES 850 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTC-----CEESSE-----EEECCCSBEE-----EECC-----------C
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHHHHhheeE-----EeccCc-----CCCCHHHHHH-----HHcCCHHHHhh--chh
Confidence 899999999999999999999 9987521 20 001110 0011111111 01121111100 111
Q ss_pred HHH-HHHHHHHHHHhhccCCCCEEEEeCCCcccc-cccchHHHHHHHHHHhC-CCcEEEEEeeeccchhhhhcCCCceeE
Q 030549 80 HLE-DNLDDWLAEELDNYLDDDYLVFDCPGQIEL-FTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVC 156 (175)
Q Consensus 80 ~~~-~~~~~~l~~~l~~~~~p~lliLDEP~~~~~-~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~ 156 (175)
.++ +..+..++++++. +|+++|||||++... .++...++.+++.++++ |.++ +++||+.+.+..+++++.+
T Consensus 851 tf~~em~~~a~al~la~--~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~v----l~~TH~~el~~~~~d~~~v 924 (1022)
T 2o8b_B 851 TFFVELSETASILMHAT--AHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRT----LFSTHYHSLVEDYSQNVAV 924 (1022)
T ss_dssp HHHHHHHHHHHHHHHCC--TTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEE----EEECCCHHHHHHTSSCSSE
T ss_pred hhHHHHHHHHHHHHhCC--CCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEE----EEEeCCHHHHHHhCCccee
Confidence 122 3334666777888 999999999944433 33345567788888766 8999 9999999999999998777
Q ss_pred ec
Q 030549 157 FC 158 (175)
Q Consensus 157 ~~ 158 (175)
+.
T Consensus 925 ~~ 926 (1022)
T 2o8b_B 925 RL 926 (1022)
T ss_dssp EE
T ss_pred ec
Confidence 64
No 87
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.64 E-value=5.2e-17 Score=125.43 Aligned_cols=122 Identities=13% Similarity=0.107 Sum_probs=76.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc--ccceeEEeecCccc---ccCCCCccCCcchhccHHHH----HHHhCCCCC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA---ENFDYPVAMDIRELISLEDV----MEELGLGPN 71 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~--~~G~I~i~g~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~ 71 (175)
+|++++|+||||||||||+|+|+|+.+| ..|.|.+.+.+++. ..++|.+ +..+.|....+ .++..+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~f--q~~~~f~~~~~~~~f~E~~~~~~~ 92 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFF--VNHDEFKEMISRDAFLEHAEVFGN 92 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEE--CCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEE--CCHHHHHHHHhcCHHHHHHHHHhc
Confidence 4999999999999999999999999986 78999998877643 2345554 33344433333 232222111
Q ss_pred CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhc
Q 030549 72 GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRT 149 (175)
Q Consensus 72 ~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~ 149 (175)
. ...+ .+. ...+.. .++++||| .+..+...+++.+ .++.|| +++||+++++..
T Consensus 93 ~-yg~~----~~~-----v~~~l~--~G~illLD-----LD~~~~~~i~~~l----~~~~tI----~i~th~~~~l~~ 145 (219)
T 1s96_A 93 Y-YGTS----REA-----IEQVLA--TGVDVFLD-----IDWQGAQQIRQKM----PHARSI----FILPPSKIELDR 145 (219)
T ss_dssp E-EEEE----HHH-----HHHHHT--TTCEEEEE-----CCHHHHHHHHHHC----TTCEEE----EEECSSHHHHHH
T ss_pred c-CCCC----HHH-----HHHHHh--cCCeEEEE-----ECHHHHHHHHHHc----cCCEEE----EEECCCHHHHHH
Confidence 1 0111 011 122334 68999999 2233233333232 257788 999999998876
No 88
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.64 E-value=1.3e-16 Score=144.78 Aligned_cols=132 Identities=14% Similarity=0.070 Sum_probs=77.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHH--------HccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSL--------YRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNG 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i--------~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 72 (175)
+|++++|+||||||||||+|++ .|.+.|.++.. +. ... ..... ++.....
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-~~----------~~d--~i~~~---------ig~~d~l 718 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-VS----------IVD--CILAR---------VGAGDSQ 718 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-EE----------CCS--EEEEE---------CC-----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-ch----------HHH--HHHHh---------cCchhhH
Confidence 4899999999999999999999 66555544321 00 000 01001 1111111
Q ss_pred chhhhHHHHHHHHHHHHHHHh--hccCCCCEEEEeCCCccccc-ccchHHHHHHHHHHh-CCCcEEEEEeeeccchhhhh
Q 030549 73 GLIYCMEHLEDNLDDWLAEEL--DNYLDDDYLVFDCPGQIELF-THVPVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFR 148 (175)
Q Consensus 73 ~~~~~~~~~~~~~~~~l~~~l--~~~~~p~lliLDEP~~~~~~-~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~ 148 (175)
.. ....++ ..+..+++.+ +. +|+++|||||++.... .+....+.+++.+++ .|.++ +++||+.+ +.
T Consensus 719 ~~--~lStf~-~e~~~~a~il~~a~--~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~v----l~aTH~~e-l~ 788 (934)
T 3thx_A 719 LK--GVSTFM-AEMLETASILRSAT--KDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFC----MFATHFHE-LT 788 (934)
T ss_dssp ------CHHH-HHHHHHHHHHHHCC--TTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEE----EEEESCGG-GG
T ss_pred HH--hHhhhH-HHHHHHHHHHHhcc--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEE----EEEcCcHH-HH
Confidence 00 111122 1122234434 55 9999999999444433 333334677888875 48999 99999955 55
Q ss_pred cCCCceeEeccchhhH
Q 030549 149 TLPPCIVCFCCTHTVV 164 (175)
Q Consensus 149 ~~~~~~~~~~~~~~~~ 164 (175)
.+++++..+.+++...
T Consensus 789 ~lad~~~~v~ng~v~~ 804 (934)
T 3thx_A 789 ALANQIPTVNNLHVTA 804 (934)
T ss_dssp GGGGTCTTEEEEEEEE
T ss_pred HHhcccceeEeeEEEE
Confidence 7888887777766543
No 89
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.63 E-value=1.9e-18 Score=133.06 Aligned_cols=142 Identities=13% Similarity=0.035 Sum_probs=82.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCccCCcchhcc--------------
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPVAMDIRELIS-------------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~~~~~~~~~~-------------- 58 (175)
+|++++|+||||||||||+|+|+|++ | |+|.+ |.+... ..+++.+ +....+.
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~l~~~~~ 95 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYF--IDKTIFEDKLKNEDFLEYDNY 95 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEE--CCHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEE--CCHHHHHHhhhccchhhhhhc
Confidence 59999999999999999999999999 5 99998 665321 1233332 1111111
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHH-----HHHhhccCCCCEEEEeCCCcccccccchHHHHHHHH
Q 030549 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWL-----AEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 59 --------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l-----~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
..++.+.+.-.... .....-+..++|+..+ ++++.. +|++++||||...........+.+.+.+
T Consensus 96 ~~~~~g~~~~~i~~~l~~~~~~-il~~~lsggq~qR~~i~~~~~~~~ll~--~~~~~~Lde~~~~~d~~~~~~i~~~l~~ 172 (218)
T 1z6g_A 96 ANNFYGTLKSEYDKAKEQNKIC-LFEMNINGVKQLKKSTHIKNALYIFIK--PPSTDVLLSRLLTRNTENQEQIQKRMEQ 172 (218)
T ss_dssp TTEEEEEEHHHHHHHHHTTCEE-EEEECHHHHHHHTTCSSCCSCEEEEEE--CSCHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred ccccCCCcHHHHHHHHhCCCcE-EEEecHHHHHHHHHHhcCCCcEEEEEe--CcCHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 01111111110000 0000112346777766 445666 8999999999333333333344444544
Q ss_pred HHh-------CCCcEEEEEeeeccchhhhhcCCCcee
Q 030549 126 LKS-------RNFNVCAVYLLDSQVCIRFRTLPPCIV 155 (175)
Q Consensus 126 l~~-------~g~tvli~~l~~sH~~~~~~~~~~~~~ 155 (175)
..+ .+.+. ++++|+++++...+++++
T Consensus 173 ~~~~~~~~h~~~~d~----iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 173 LNIELHEANLLNFNL----SIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp HHHHHHHHTTSCCSE----EEECSSHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCCE----EEECCCHHHHHHHHHHHH
Confidence 322 45677 788899998888777554
No 90
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.59 E-value=1e-15 Score=126.73 Aligned_cols=121 Identities=17% Similarity=0.074 Sum_probs=81.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccc-cceeEEeecCccc---ccCCCCccCCcchhccHHHHHHHhCCCCCCchhh
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAA---ENFDYPVAMDIRELISLEDVMEELGLGPNGGLIY 76 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~-~G~I~i~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 76 (175)
+|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++.. ...++.+ +. .++....
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~--Q~-----------~~g~~~~----- 196 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVN--QR-----------EVGEDTK----- 196 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEE--EE-----------EBTTTBS-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEE--ee-----------ecCCCHH-----
Confidence 48999999999999999999999999998 8999887765421 0111111 00 0111110
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeE
Q 030549 77 CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVC 156 (175)
Q Consensus 77 ~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~ 156 (175)
. ++..++.++.. +|+++++|||. + .+.+...++.. ..|.+| +.++|..+ +.+.+++++.
T Consensus 197 ---~----~~~~l~~~L~~--~pd~illdE~~-----d-~e~~~~~l~~~-~~g~~v----i~t~H~~~-~~~~~~rl~~ 255 (372)
T 2ewv_A 197 ---S----FADALRAALRE--DPDVIFVGEMR-----D-LETVETALRAA-ETGHLV----FGTLHTNT-AIDTIHRIVD 255 (372)
T ss_dssp ---C----SHHHHHHHTTS--CCSEEEESCCC-----S-HHHHHHHHHHH-TTTCEE----EECCCCCS-HHHHHHHHHH
T ss_pred ---H----HHHHHHHHhhh--CcCEEEECCCC-----C-HHHHHHHHHHH-hcCCEE----EEEECcch-HHHHHHHHHH
Confidence 1 13467788888 99999999993 1 11223345543 568888 88999844 8888888877
Q ss_pred eccc
Q 030549 157 FCCT 160 (175)
Q Consensus 157 ~~~~ 160 (175)
+...
T Consensus 256 l~~~ 259 (372)
T 2ewv_A 256 IFPL 259 (372)
T ss_dssp TSCT
T ss_pred hcCc
Confidence 6543
No 91
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.59 E-value=3e-16 Score=124.70 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=23.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
.++|+||||||||||+|+|+|+.+|++|+|.++|.++
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i 40 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKI 40 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCccc
Confidence 5899999999999999999999999999999998764
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.59 E-value=2.2e-15 Score=109.61 Aligned_cols=87 Identities=17% Similarity=0.188 Sum_probs=64.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccc--eeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhH
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCM 78 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G--~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (175)
+|+.++|+||||||||||++++++...+ +| .+++++.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~----------------------------------- 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT----------------------------------- 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-----------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-----------------------------------
Confidence 4889999999999999999999999877 57 555554432111
Q ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCc-EEEEEeeeccc
Q 030549 79 EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFN-VCAVYLLDSQV 143 (175)
Q Consensus 79 ~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~t-vli~~l~~sH~ 143 (175)
++.. +|+++++|||....... .+.+..++.++.++|.+ + +++||.
T Consensus 79 -------------~~~~--~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~i----iits~~ 124 (149)
T 2kjq_A 79 -------------DAAF--EAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFL----LLGSEY 124 (149)
T ss_dssp -------------GGGG--GCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEE----EEEESS
T ss_pred -------------HHHh--CCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEE----EEECCC
Confidence 1245 89999999995433322 55666788887777888 7 778884
No 93
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.58 E-value=8.8e-16 Score=137.12 Aligned_cols=123 Identities=15% Similarity=0.103 Sum_probs=69.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc-cccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHH
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~-~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (175)
|++++|+||||||||||+|+|+|+.. ++.|.+. +.....+++.+ +....+ ++.+++..+..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----pa~~~~i~~v~--~i~~~~---~~~d~l~~g~S--------- 637 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----PAEEAHLPLFD--GIYTRI---GASDDLAGGKS--------- 637 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----SSSEEEECCCS--EEEEEC---CC------CCS---------
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----ehhccceeeHH--HhhccC---CHHHHHHhccc---------
Confidence 78999999999999999999999875 6778653 11122233332 111111 11122222111
Q ss_pred HHHHHHHHHHHHh--hccCCCCEEEEeCCCcc-cccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhh
Q 030549 81 LEDNLDDWLAEEL--DNYLDDDYLVFDCPGQI-ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFR 148 (175)
Q Consensus 81 ~~~~~~~~l~~~l--~~~~~p~lliLDEP~~~-~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~ 148 (175)
..+.++..+++++ +. +|+++|||||++. .-.+.....+.+++.+++.|.|+ +++||+.+...
T Consensus 638 ~~~~e~~~la~il~~a~--~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~v----l~~TH~~~l~~ 702 (765)
T 1ewq_A 638 TFMVEMEEVALILKEAT--ENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYT----LFATHYFELTA 702 (765)
T ss_dssp HHHHHHHHHHHHHHHCC--TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEE----EEECCCHHHHT
T ss_pred HHHHHHHHHHHHHHhcc--CCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEE----EEEeCCHHHHH
Confidence 1123334455555 56 9999999999322 00111111123455555568899 99999987653
No 94
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.57 E-value=1.6e-14 Score=111.27 Aligned_cols=140 Identities=15% Similarity=0.152 Sum_probs=74.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc--cCcc-----ccceeEEeecCccc--------ccCCCCccCCcchhccHHHHHHH
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYR--HCET-----VRRTMHIVNLDPAA--------ENFDYPVAMDIRELISLEDVMEE 65 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~g--l~~~-----~~G~I~i~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 65 (175)
+|++++|+||||||||||++.+++ +.+| ..|.+++++.+... +..++ ...+++++
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~ 92 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL----------SGSDVLDN 92 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTC----------CHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCC----------CHHHHhhC
Confidence 489999999999999999999999 5655 56778888765210 01111 11223444
Q ss_pred hCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccc-------c-----chHHHHHHHHHH-hCCCc
Q 030549 66 LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFT-------H-----VPVLRNFVDHLK-SRNFN 132 (175)
Q Consensus 66 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~-------~-----~~~~~~~l~~l~-~~g~t 132 (175)
+.+..... .....+......+..-.. +|+++++|||+...... . ...+...+++++ +.|.|
T Consensus 93 ~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~t 166 (243)
T 1n0w_A 93 VAYARAFN----TDHQTQLLYQASAMMVES--RYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVA 166 (243)
T ss_dssp EEEEECCS----HHHHHHHHHHHHHHHHHS--CEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_pred eEEEecCC----HHHHHHHHHHHHHHHhcC--CceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 32211110 111111111111111124 89999999994332221 1 122333344443 45899
Q ss_pred EEEEEeeeccchhhhhc-------------------CCCceeEeccc
Q 030549 133 VCAVYLLDSQVCIRFRT-------------------LPPCIVCFCCT 160 (175)
Q Consensus 133 vli~~l~~sH~~~~~~~-------------------~~~~~~~~~~~ 160 (175)
| ++++|...+... .||+++++..+
T Consensus 167 v----i~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 167 V----VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp E----EEEC-------------------------CCTTCEEEEEEEC
T ss_pred E----EEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 9 999997766544 78888888764
No 95
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.57 E-value=5.2e-15 Score=120.59 Aligned_cols=130 Identities=13% Similarity=0.096 Sum_probs=79.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCCCCccCCcchhccHHHHHHHhCCC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPVAMDIRELISLEDVMEELGLG 69 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (175)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.+... +..+.....+.....+...+.+++.++
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999987532 122211111222222233333332111
Q ss_pred C----C------CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH-hCCCcEEEEEe
Q 030549 70 P----N------GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYL 138 (175)
Q Consensus 70 ~----~------~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-~~g~tvli~~l 138 (175)
. . .........+.... ..+++++.. ++++++||.++..+..+ .++.++ ..+.|+ +
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL-~~i~ral~~--de~llvLDa~t~~~~~~-------~~~~~~~~~~it~----i 273 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEM-KKIARVTKP--NLVIFVGDALAGNAIVE-------QARQFNEAVKIDG----I 273 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHH-HHHHHHHCC--SEEEEEEEGGGTTHHHH-------HHHHHHHHSCCCE----E
T ss_pred HhccchhhHHhhccchhHHHHHHHHH-HHHHHHhcC--CCCEEEEecHHHHHHHH-------HHHHHHHhcCCCE----E
Confidence 0 0 00000001111111 125667777 99999999885555554 677775 458999 9
Q ss_pred eeccch
Q 030549 139 LDSQVC 144 (175)
Q Consensus 139 ~~sH~~ 144 (175)
++||.-
T Consensus 274 ilTKlD 279 (328)
T 3e70_C 274 ILTKLD 279 (328)
T ss_dssp EEECGG
T ss_pred EEeCcC
Confidence 999954
No 96
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.57 E-value=7.2e-16 Score=139.74 Aligned_cols=129 Identities=9% Similarity=0.030 Sum_probs=68.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-ccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHH
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+|++++|+||||||||||+|+++++... ..|.. + +.......... ..+....+.+.+..+ ....
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~-v---pa~~~~i~~~d-----~i~~~ig~~d~l~~~------~stf 736 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALITIMAQIGSY-V---PAEEATIGIVD-----GIFTRMGAADNIYKG------RSTF 736 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC-B---SSSEEEEECCS-----EEEEEC----------------CCH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc-c---cchhhhhhHHH-----HHHHhCChHHHHHHh------HHHh
Confidence 4899999999999999999999865321 11110 0 00000011110 011100111111111 1111
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccc-cchHHHHHHHHHHh-CCCcEEEEEeeeccchhhhhcCCC
Q 030549 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFT-HVPVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPP 152 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~-~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~ 152 (175)
...+++...+.++ +. +|+++|||||+...... .....+.+++.+++ .|.|+ +++||+++.+ ++++
T Consensus 737 s~em~~~~~il~~-a~--~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tv----l~vTH~~el~-~l~~ 803 (918)
T 3thx_B 737 MEELTDTAEIIRK-AT--SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLT----LFVTHYPPVC-ELEK 803 (918)
T ss_dssp HHHHHHHHHHHHH-CC--TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEE----EEECSCGGGG-GHHH
T ss_pred hHHHHHHHHHHHh-cc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeE----EEEeCcHHHH-HHHh
Confidence 1224444444444 55 99999999994443333 33334477888754 68999 9999997655 4443
No 97
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.57 E-value=1.1e-15 Score=125.47 Aligned_cols=136 Identities=15% Similarity=0.056 Sum_probs=74.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC--cccc----ce-eEEeecCcc-cccCCCCccCCcchhccHHHHHHHhCCCCCC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHC--ETVR----RT-MHIVNLDPA-AENFDYPVAMDIRELISLEDVMEELGLGPNG 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~--~~~~----G~-I~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 72 (175)
+|++++|+||||||||||++.+++.. +|++ |+ |++++.+.. .+.+.+.+ +.. .+...++.+++.+....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~--q~~-~~~~~~v~~ni~~~~~~ 206 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIA--QNR-GLDPDEVLKHIYVARAF 206 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHH--HTT-TCCHHHHGGGEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHH--HHc-CCCHHHHhhCEEEEecC
Confidence 48999999999999999999999998 6776 67 888886541 11111111 000 11123455554432211
Q ss_pred chhhhHHHHHHHHHHHHHHHhhc-c----CCCCEEEEeCCCccccccc------------chHHHHHHHHHH-hCCCcEE
Q 030549 73 GLIYCMEHLEDNLDDWLAEELDN-Y----LDDDYLVFDCPGQIELFTH------------VPVLRNFVDHLK-SRNFNVC 134 (175)
Q Consensus 73 ~~~~~~~~~~~~~~~~l~~~l~~-~----~~p~lliLDEP~~~~~~~~------------~~~~~~~l~~l~-~~g~tvl 134 (175)
. .. .+.+....++.+.. + .+|+++++|||+....... ...+...|+++. +.+.||
T Consensus 207 ~----~~--~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tv- 279 (349)
T 1pzn_A 207 N----SN--HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAV- 279 (349)
T ss_dssp S----HH--HHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEE-
T ss_pred C----hH--HHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEE-
Confidence 0 11 12222223333331 1 3899999999943322210 122333445553 458999
Q ss_pred EEEeeeccchhhhhc
Q 030549 135 AVYLLDSQVCIRFRT 149 (175)
Q Consensus 135 i~~l~~sH~~~~~~~ 149 (175)
++++|.......
T Consensus 280 ---ii~~h~~~~~~~ 291 (349)
T 1pzn_A 280 ---FVTNQVQARPDA 291 (349)
T ss_dssp ---EEEEECC-----
T ss_pred ---EEEccccccccc
Confidence 889998776543
No 98
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.56 E-value=4e-16 Score=136.48 Aligned_cols=136 Identities=15% Similarity=-0.011 Sum_probs=68.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccCcc-ccceeEEeecCccc----------ccCCCCccCCcchhccHHHHHHHhCCCCCC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAA----------ENFDYPVAMDIRELISLEDVMEELGLGPNG 72 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~-~~G~I~i~g~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 72 (175)
.+||+||||||||||+++|+|+..| ++|.|+++|.++.. ..+++.+ +....+...++.+++......
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~--Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQD--YEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC-----CCCCCHHHHHTTHHHHHHH
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeec--ccccCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999999988 79999998876421 1223333 222222333333322110000
Q ss_pred chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCC------CcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhh
Q 030549 73 GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCP------GQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIR 146 (175)
Q Consensus 73 ~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP------~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~ 146 (175)
..... ...+. ....++.... ..|+++++||| ...........+.++++++.+++.++++ ++++|+++.
T Consensus 125 ~~~~~-~~~s~-~~i~l~i~~~--~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil--~vvt~~~d~ 198 (608)
T 3szr_A 125 IAGEG-MGISH-ELITLEISSR--DVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISL--VVVPSNVDI 198 (608)
T ss_dssp HHCSS-SCCCS-CCEEEEEEES--SSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEE--EEEESSSCT
T ss_pred hcCCc-cccch-HHHHHHhcCC--CCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCce--EEEeccchh
Confidence 00000 00000 0000001112 37999999999 4443444455677788886544434422 778888764
Q ss_pred h
Q 030549 147 F 147 (175)
Q Consensus 147 ~ 147 (175)
+
T Consensus 199 a 199 (608)
T 3szr_A 199 A 199 (608)
T ss_dssp T
T ss_pred c
Confidence 4
No 99
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.56 E-value=1.9e-14 Score=117.43 Aligned_cols=69 Identities=12% Similarity=0.053 Sum_probs=54.7
Q ss_pred HHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccch
Q 030549 86 DDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 86 ~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
+.++++++.. +|++++||||+...+......+.++++++.++|.|| +++||+ .++.+.||+++.+....
T Consensus 262 ~l~~a~~l~~--~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~v----i~~sH~-~~~~~~~d~~~~l~~~~ 330 (339)
T 3qkt_A 262 RLAMSLYLAG--EISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV----ILVSHD-EELKDAADHVIRISLEN 330 (339)
T ss_dssp HHHHHHHTTT--TTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEE----EEEESC-GGGGGGCSEEEEEEEET
T ss_pred HHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEE----EEEECh-HHHHHhCCEEEEEEecC
Confidence 4566667777 999999999966666666667777888887778899 999999 45788999999887543
No 100
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.55 E-value=2e-15 Score=112.20 Aligned_cols=107 Identities=12% Similarity=0.111 Sum_probs=65.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccce-eEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHH
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRT-MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~-I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (175)
|+.++|.||||||||||++++++.+.|.+|. +.+ ++ ..+..+.+. ..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~---------------~~------~~~~~~~~~-----------~~ 85 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF---------------FD------TKDLIFRLK-----------HL 85 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE---------------EE------HHHHHHHHH-----------HH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE---------------EE------HHHHHHHHH-----------HH
Confidence 7899999999999999999999999877763 211 01 111111110 00
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCCc-ccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhh
Q 030549 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRF 147 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~~~~p~lliLDEP~~-~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~ 147 (175)
........ ...... +|++++||||.. .......+.+.+++....++|.++ +++||...+.
T Consensus 86 ~~~~~~~~-~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~i----i~tsn~~~~~ 146 (180)
T 3ec2_A 86 MDEGKDTK-FLKTVL--NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKST----IITTNYSLQR 146 (180)
T ss_dssp HHHTCCSH-HHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEE----EEECCCCSCC
T ss_pred hcCchHHH-HHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCE----EEEcCCChhH
Confidence 00000000 011123 899999999942 222223445666777776778999 8999987654
No 101
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.55 E-value=3.9e-15 Score=133.57 Aligned_cols=137 Identities=12% Similarity=0.083 Sum_probs=73.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-ccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHH
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+|++++|+||||||||||+|+|+|+... ..|.. .+.....+++.. +....+. +.+++..+... .
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~----vpa~~~~i~~~~--~i~~~~~---~~d~l~~~~st---f--- 670 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY----VPAQKVEIGPID--RIFTRVG---AADDLASGRST---F--- 670 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC----BSSSEEEECCCC--EEEEEEC-----------------C---
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc----cchhcccceeHH--HHHhhCC---HHHHHHhhhhh---h---
Confidence 4899999999999999999999998532 23311 011111222222 1111111 11222111100 0
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCcc-cccccchHHHHHHHHHHh-CCCcEEEEEeeeccchhhhhcCCCceeEe
Q 030549 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQI-ELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~-~~~~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
. .+..+.......+. +|+++|||||+.. +..+.....+.+++.+++ .|.++ +++||+.+.. .+++++..+
T Consensus 671 ~-~e~~~~~~il~~a~--~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~v----l~~TH~~el~-~l~d~~~~v 742 (800)
T 1wb9_A 671 M-VEMTETANILHNAT--EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALT----LFATHYFELT-QLPEKMEGV 742 (800)
T ss_dssp H-HHHHHHHHHHHHCC--TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEE----EEECSCGGGG-GHHHHSTTE
T ss_pred h-HHHHHHHHHHHhcc--CCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeE----EEEeCCHHHH-HHhhhhhce
Confidence 0 11222222223355 9999999999333 223333334678888877 48999 9999998654 577755444
Q ss_pred ccc
Q 030549 158 CCT 160 (175)
Q Consensus 158 ~~~ 160 (175)
.++
T Consensus 743 ~n~ 745 (800)
T 1wb9_A 743 ANV 745 (800)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 102
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.53 E-value=3.9e-16 Score=128.11 Aligned_cols=155 Identities=14% Similarity=0.094 Sum_probs=89.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--ccCCC------------Ccc--CCcchhcc----HH
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDY------------PVA--MDIRELIS----LE 60 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--~~~~~------------~~~--~~~~~~~~----~~ 60 (175)
+|++++|+||||||||||+++|+|+.+|+.|.+.+.|++... ..+.+ ... ......+. ..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~ 149 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTAT 149 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHH
Confidence 599999999999999999999999999999999998876321 00111 000 00011110 11
Q ss_pred HHHHHh-CCCCCCc-hhhhHHHHHHH-HHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh--CCC-cEE
Q 030549 61 DVMEEL-GLGPNGG-LIYCMEHLEDN-LDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS--RNF-NVC 134 (175)
Q Consensus 61 ~~~~~~-~l~~~~~-~~~~~~~~~~~-~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~--~g~-tvl 134 (175)
.+.+.+ ..+.... .......+++. ++..++ .. +|++ +..........+.++++++.+ +|. |.+
T Consensus 150 ~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~la---l~--~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~ 218 (347)
T 2obl_A 150 TIAEYFRDQGKNVLLMMDSVTRYARAARDVGLA---SG--EPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAI 218 (347)
T ss_dssp HHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHH---TT--CCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEE
T ss_pred HHHHHHHhccccHHHHHhhHHHHHHHHHHHHHH---cC--CCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeE
Confidence 122221 1111000 00123344433 334433 34 6665 233333344455667877753 464 333
Q ss_pred EEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030549 135 AVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 135 i~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
.+++++||+++ +.+||++..+..++.+..++.
T Consensus 219 ~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l 250 (347)
T 2obl_A 219 YTVLLESDNVN--DPIGDEVRSILDGHIVLTREL 250 (347)
T ss_dssp EEEECCSSCCC--CHHHHHHHHHCSEEEEBCHHH
T ss_pred EEEEEeCCCCC--ChhhhheEEeeCcEEEEeCCH
Confidence 34499999998 678999999988888776653
No 103
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.53 E-value=1.4e-16 Score=129.09 Aligned_cols=32 Identities=22% Similarity=0.154 Sum_probs=29.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccce
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRT 32 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~ 32 (175)
+|+++||+||||||||||+++|+|+++|+.|.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 48999999999999999999999999998773
No 104
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.53 E-value=2.4e-14 Score=108.70 Aligned_cols=144 Identities=13% Similarity=-0.010 Sum_probs=78.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc-ccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHH
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+|++++|+||||||||||++.+++ ++..+.++++.... ....+.... ....+...++.+++.+.... ...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~ 89 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQMA---ETRGLNPEEALSRFILFTPS----DFK 89 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHHHH---HTTTCCHHHHHHHEEEECCT----TTS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHHHH---HhcCCChHHHhhcEEEEecC----CHH
Confidence 489999999999999999999999 44334445444320 000000000 00001112233333221111 001
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccc-----cchH---HHHHHHHHHh-CCCcEEEEEeeeccchh-----
Q 030549 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFT-----HVPV---LRNFVDHLKS-RNFNVCAVYLLDSQVCI----- 145 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~-----~~~~---~~~~l~~l~~-~g~tvli~~l~~sH~~~----- 145 (175)
. +++....++++..- +|+++++|||+...... .... +...|+++.+ .+.|| ++++|...
T Consensus 90 ~--~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~v----i~~~h~~~~~~~~ 162 (220)
T 2cvh_A 90 E--QRRVIGSLKKTVDS-NFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPV----IVINQVHFDSRTE 162 (220)
T ss_dssp H--HHHHHHHHHHHCCT-TEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCE----EEEECSSSSCTTS
T ss_pred H--HHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEE----EEEeeEEEcCCCC
Confidence 1 12223334455551 49999999994332111 1122 2334666643 48899 88999876
Q ss_pred --------hhhcCCCceeEeccc
Q 030549 146 --------RFRTLPPCIVCFCCT 160 (175)
Q Consensus 146 --------~~~~~~~~~~~~~~~ 160 (175)
.++..+|+++.+...
T Consensus 163 ~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 163 MTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp SCCSCCCHHHHHTSSEEEEEEEC
T ss_pred ccccCCCcceeecCcEEEEEEEe
Confidence 456789999988765
No 105
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.51 E-value=1.4e-14 Score=119.38 Aligned_cols=129 Identities=13% Similarity=0.069 Sum_probs=84.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhcc-HHHHHHHhCCCCCCchhhhHH
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS-LEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+|++++|+||||||||||+++|+|+++|++|.|.++|.... ...... +....+. .... .+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~--~~~~~~--~~v~~v~~q~~~---~~~----------- 235 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPEL--FLPDHP--NHVHLFYPSEAK---EEE----------- 235 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCC--CCTTCS--SEEEEECC---------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcccc--CccccC--CEEEEeecCccc---ccc-----------
Confidence 48999999999999999999999999999999999874211 110000 1001111 0000 000
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEecc
Q 030549 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
.....++..++.++.. +|+.+++|||......+ +++.+.....|+ +.++|.. .+...++|+..+..
T Consensus 236 ~~~~t~~~~i~~~l~~--~pd~~l~~e~r~~~~~~-------~l~~l~~g~~~~----l~t~H~~-~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 236 NAPVTAATLLRSCLRM--KPTRILLAELRGGEAYD-------FINVAASGHGGS----ITSCHAG-SCELTFERLALMVL 301 (361)
T ss_dssp ---CCHHHHHHHHTTS--CCSEEEESCCCSTHHHH-------HHHHHHTTCCSC----EEEEECS-SHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHhc--CCCEEEEcCchHHHHHH-------HHHHHhcCCCeE----EEEECCC-CHHHHHHHHHHHHh
Confidence 0112344566777888 99999999994433343 787776555677 7778874 58888888888876
Q ss_pred ch
Q 030549 160 TH 161 (175)
Q Consensus 160 ~~ 161 (175)
+.
T Consensus 302 ~~ 303 (361)
T 2gza_A 302 QN 303 (361)
T ss_dssp TS
T ss_pred cc
Confidence 54
No 106
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.50 E-value=1.1e-15 Score=129.06 Aligned_cols=153 Identities=10% Similarity=-0.012 Sum_probs=89.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC---ccc------------ccCCCCccCCcchhccHHH----
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD---PAA------------ENFDYPVAMDIRELISLED---- 61 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~---~~~------------~~~~~~~~~~~~~~~~~~~---- 61 (175)
+|++++|+||||||||||+++|+|+.+|++|.|.+.|.. ... +.+.+.+.. ....+...+
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~-~~~~~~~~~v~~~ 234 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA-DVSPLLRMQGAAY 234 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT-TSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC-CCCHHHHHHHHHH
Confidence 599999999999999999999999999999999999983 211 112233211 111111111
Q ss_pred ---HHHHhCCCCCC--chhhhHHHHHHH-HHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh---C-CC
Q 030549 62 ---VMEELGLGPNG--GLIYCMEHLEDN-LDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS---R-NF 131 (175)
Q Consensus 62 ---~~~~~~l~~~~--~~~~~~~~~~~~-~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~---~-g~ 131 (175)
..+.+...... ........++.. |+..++ .. +|++ ...........+.++++++.+ + |.
T Consensus 235 ~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA---l~--~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~Gs 303 (438)
T 2dpy_A 235 ATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA---IG--EPPA------TKGYPPSVFAKLPALVERAGNGIHGGGS 303 (438)
T ss_dssp HHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH---TT--CCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCE
T ss_pred HHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH---hC--CCcc------cccCCHHHHHHHHHHHHHHHhccCCCCc
Confidence 12222111110 001112334422 555554 44 7776 333334444456667777654 2 53
Q ss_pred -cEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030549 132 -NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 132 -tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|.+.+++++||+++ ...+|+++.+..++.+..++
T Consensus 304 iT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~ 338 (438)
T 2dpy_A 304 ITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSRR 338 (438)
T ss_dssp EEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECHH
T ss_pred ccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeCC
Confidence 23333399999998 67788888888777766554
No 107
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.49 E-value=2e-14 Score=114.02 Aligned_cols=136 Identities=14% Similarity=0.109 Sum_probs=70.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-ccCCCCccCCcchh--------------ccHHHHHHH
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-ENFDYPVAMDIREL--------------ISLEDVMEE 65 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-~~~~~~~~~~~~~~--------------~~~~~~~~~ 65 (175)
+|++++|+||||||||||++.+++... .|++. .|.++.. ..+.|...-...+. .....+++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~ 105 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADG 105 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCc
Confidence 589999999999999999999998664 34332 1222110 00111000000000 001233455
Q ss_pred hCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCc--ccccccc---hHHHHHHHHHH-hCCCcEEEEEee
Q 030549 66 LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHV---PVLRNFVDHLK-SRNFNVCAVYLL 139 (175)
Q Consensus 66 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~--~~~~~~~---~~~~~~l~~l~-~~g~tvli~~l~ 139 (175)
+.+....... ...++..+.. ..+++.. +|+++++|||+. ..+.+.. ..+...|+++. +.|.|| ++
T Consensus 106 l~l~~~~~~~--~~~ls~g~~~-~i~~l~~--~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tv----i~ 176 (279)
T 1nlf_A 106 LLIQPLIGSL--PNIMAPEWFD-GLKRAAE--GRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSI----VF 176 (279)
T ss_dssp EEECCCTTSC--CCTTSHHHHH-HHHHHHT--TCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEE----EE
T ss_pred eEEeecCCCC--cccCCHHHHH-HHHHhcC--CCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEE----EE
Confidence 5443321111 1112222211 2346667 999999999944 2222222 44556677774 569999 99
Q ss_pred eccchhhhh
Q 030549 140 DSQVCIRFR 148 (175)
Q Consensus 140 ~sH~~~~~~ 148 (175)
++|......
T Consensus 177 i~H~~~~~~ 185 (279)
T 1nlf_A 177 LHHASKGAA 185 (279)
T ss_dssp EEEC-----
T ss_pred EecCCCccc
Confidence 999887653
No 108
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.46 E-value=1.9e-15 Score=124.46 Aligned_cols=147 Identities=7% Similarity=-0.005 Sum_probs=77.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCcccc----ceeEEeecCcccccCCCCccCCcchhc--------cHHHHHHHhCCC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVR----RTMHIVNLDPAAENFDYPVAMDIRELI--------SLEDVMEELGLG 69 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~----G~I~i~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~ 69 (175)
|+.++|+||||||||||+|+|+|+++|++ |++.+++..... ...+.. .+..... ...++.+++.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~-~~~~~~-~~~~~I~~~~q~~~~~~~t~~~nl~~~ 247 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGD-EQAMQY-SDYPQMALGHQRYIDYAVRHSHKIAFI 247 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSC-TTSSCT-TTHHHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCC-cccCCh-hHHHHHHHHHHHHHHHHHhccCCEEEE
Confidence 78999999999999999999999999999 888774321000 011000 0000000 011222333222
Q ss_pred CCCchhhhHHHHH--HHHHHHHHHHh-hccCCCCEEEEeC---CCc------ccccccchHHHHHHHHHH-hCCCcEEEE
Q 030549 70 PNGGLIYCMEHLE--DNLDDWLAEEL-DNYLDDDYLVFDC---PGQ------IELFTHVPVLRNFVDHLK-SRNFNVCAV 136 (175)
Q Consensus 70 ~~~~~~~~~~~~~--~~~~~~l~~~l-~~~~~p~lliLDE---P~~------~~~~~~~~~~~~~l~~l~-~~g~tvli~ 136 (175)
............+ .+++..+++.. .. +|++++||| |.. ......+..+.+.++++. +.+.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~i--- 322 (365)
T 1lw7_A 248 DTDFITTQAFCIQYEGKAHPFLDSMIKEY--PFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPY--- 322 (365)
T ss_dssp SSCHHHHHHHHHHHHSCCCHHHHHHHHHS--CCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCC---
T ss_pred eCCchHHHHHHHHHcCCCCHHHHHHHhhc--CCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCE---
Confidence 1111111111111 22334445543 35 899999999 621 112223445666776654 458899
Q ss_pred EeeeccchhhhhcCCCceeEe
Q 030549 137 YLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 137 ~l~~sH~~~~~~~~~~~~~~~ 157 (175)
++++|. .+.+++++++.++
T Consensus 323 -lilde~-~~~~r~~~~i~~i 341 (365)
T 1lw7_A 323 -IEIESP-SYLDRYNQVKAVI 341 (365)
T ss_dssp -EEEECS-SHHHHHHHHHHHH
T ss_pred -EEeCCC-CHHHHHHHHHHHH
Confidence 777764 4555555544443
No 109
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.43 E-value=4e-14 Score=104.02 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=37.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~ 41 (175)
+|++++|+||||||||||+|+|+|++ |++|+|.++|+++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLV 71 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeee
Confidence 49999999999999999999999999 99999999988764
No 110
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.43 E-value=5.1e-14 Score=105.18 Aligned_cols=38 Identities=32% Similarity=0.379 Sum_probs=33.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~ 41 (175)
||++++|+||||||||||+++|++ +.+|++.+++.++.
T Consensus 1 mg~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~ 38 (189)
T 2bdt_A 1 MKKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIIN 38 (189)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchh
Confidence 689999999999999999999987 67899999886643
No 111
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.40 E-value=3e-14 Score=108.07 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=26.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+|+++||+||||||||||+++|+|+++|
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~ 32 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGE 32 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999999999876
No 112
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.38 E-value=1e-14 Score=117.62 Aligned_cols=124 Identities=13% Similarity=-0.003 Sum_probs=70.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC-cc-------cccCCCCccCCcchhccHHHHHHHhCCCCCC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PA-------AENFDYPVAMDIRELISLEDVMEELGLGPNG 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 72 (175)
+|++++|+||||||||||+++|+|++ +|+|...+.. +. ..++.+.+ +..+ ...+.++.+ +.. .
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~~lf~~ti~~~ni~~~~--~~~~--~~~~~i~~~-L~~-g 195 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKSHFWLASLADTRAALVD--DATH--ACWRYFDTY-LRN-A 195 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTSGGGGGGGTTCSCEEEE--EECH--HHHHHHHHT-TTG-G
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCccccccccHHHHhhccCc--cccH--HHHHHHHHH-hHc-c
Confidence 59999999999999999999999998 8999754321 10 01111111 0000 123344442 111 1
Q ss_pred chhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcC
Q 030549 73 GLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTL 150 (175)
Q Consensus 73 ~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~ 150 (175)
.. ...+| ++|| +|++.. +|++|| +...+......+. ..||++..+ .+
T Consensus 196 -ld--g~~LSgGqkQR---ARAll~--~p~iLl----Ts~LD~~~~~~i~------------------~ltH~~~~~-~~ 244 (305)
T 2v9p_A 196 -LD--GYPVSIDRKHK---AAVQIK--APPLLV----TSNIDVQAEDRYL------------------YLHSRVQTF-RF 244 (305)
T ss_dssp -GG--TCCEECCCSSC---CCCEEC--CCCEEE----EESSCSTTCGGGG------------------GGTTTEEEE-EC
T ss_pred -CC--ccCcCHHHHHH---HHHHhC--CCCEEE----ECCCCHHHHHHHH------------------HHhCCHHHH-Hh
Confidence 11 12233 6676 888888 999999 2221122111111 128887754 68
Q ss_pred CCceeEeccchhhHH
Q 030549 151 PPCIVCFCCTHTVVQ 165 (175)
Q Consensus 151 ~~~~~~~~~~~~~~~ 165 (175)
+|++ +++.|..+.+
T Consensus 245 aD~i-vl~~G~iv~~ 258 (305)
T 2v9p_A 245 EQPC-TDESGEQPFN 258 (305)
T ss_dssp CCCC-CCC---CCCC
T ss_pred CCEE-EEeCCEEEEe
Confidence 9999 9988876643
No 113
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.38 E-value=1.6e-12 Score=108.48 Aligned_cols=140 Identities=14% Similarity=0.094 Sum_probs=77.7
Q ss_pred CCeEEEEECCCCCcHHHHHH--HHHccCccccc-----eeEEeecCccc--------ccCCCCccCCcchhccHHHHHHH
Q 030549 1 MGYAQLVIGPAGSGKSTYCS--SLYRHCETVRR-----TMHIVNLDPAA--------ENFDYPVAMDIRELISLEDVMEE 65 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk--~i~gl~~~~~G-----~I~i~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 65 (175)
+|++++|+||||||||||++ ++.++.+++.| .+++++.+... +..++ ...+++++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl----------~~~~vlen 246 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGL----------DPDDALNN 246 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTC----------CHHHHHHT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCC----------ChHhHhhc
Confidence 48999999999999999999 45677776544 77787765211 11111 12344554
Q ss_pred hCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCccccccc---------c---hHHHHHHHHHHh-CCCc
Q 030549 66 LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTH---------V---PVLRNFVDHLKS-RNFN 132 (175)
Q Consensus 66 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~---------~---~~~~~~l~~l~~-~g~t 132 (175)
+.+..... .....+............ +|+++++|||+....... . ..+...|+++++ .|.|
T Consensus 247 i~~~~~~~----~~~~~~~l~~~~~~l~~~--~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~git 320 (400)
T 3lda_A 247 VAYARAYN----ADHQLRLLDAAAQMMSES--RFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVA 320 (400)
T ss_dssp EEEEECCS----HHHHHHHHHHHHHHHHHS--CEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_pred EEEeccCC----hHHHHHHHHHHHHHHHhc--CCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 43322211 111111111111112224 899999999932221110 1 234456667654 5999
Q ss_pred EEEEEeeeccchh-------------------hhhcCCCceeEeccc
Q 030549 133 VCAVYLLDSQVCI-------------------RFRTLPPCIVCFCCT 160 (175)
Q Consensus 133 vli~~l~~sH~~~-------------------~~~~~~~~~~~~~~~ 160 (175)
| ++++|... .++..+|+++.+..+
T Consensus 321 V----Ilv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 321 V----VVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp E----EEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred E----EEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 9 88888732 235556777777654
No 114
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.33 E-value=4.4e-12 Score=104.41 Aligned_cols=71 Identities=8% Similarity=-0.092 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhh---------ccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCC
Q 030549 82 EDNLDDWLAEELD---------NYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPP 152 (175)
Q Consensus 82 ~~~~~~~l~~~l~---------~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~ 152 (175)
.|+++..++++++ . +|++++||||....+...+..+.+.+.++ +.|+ +++|| .++ .++
T Consensus 269 Gqqq~l~lA~~La~~~l~~~~~~--~p~iLLLDEp~s~LD~~~~~~l~~~l~~~---~qt~----i~~th-~~~---~~~ 335 (359)
T 2o5v_A 269 GEGRTVALALRRAELELLREKFG--EDPVLLLDDFTAELDPHRRQYLLDLAASV---PQAI----VTGTE-LAP---GAA 335 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS--SCCEEEECCGGGCCCHHHHHHHHHHHHHS---SEEE----EEESS-CCT---TCS
T ss_pred HHHHHHHHHHHHHHhhhhhhccC--CCCEEEEeCccccCCHHHHHHHHHHHHhc---CcEE----EEEEe-ccc---cCC
Confidence 3778889999888 6 99999999995555555555555566554 2466 88899 444 889
Q ss_pred ceeEeccchhhHH
Q 030549 153 CIVCFCCTHTVVQ 165 (175)
Q Consensus 153 ~~~~~~~~~~~~~ 165 (175)
+++.+..|..+..
T Consensus 336 ~i~~l~~G~i~~~ 348 (359)
T 2o5v_A 336 LTLRAQAGRFTPV 348 (359)
T ss_dssp EEEEEETTEEEEC
T ss_pred EEEEEECCEEEec
Confidence 9999988876543
No 115
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.32 E-value=4.7e-12 Score=107.87 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=37.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
+|++++|+|+||||||||+++|+|++++++|+|.+.+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 4899999999999999999999999999999999987664
No 116
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.31 E-value=2e-13 Score=106.38 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+|+++||+||||||||||+|+|+|++
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999999976
No 117
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.28 E-value=7.7e-14 Score=108.64 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=34.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHH---ccCccccceeEEeec
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLY---RHCETVRRTMHIVNL 38 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~---gl~~~~~G~I~i~g~ 38 (175)
+++++|+||||||||||+++|+ |+..++.|++.+.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~ 66 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENI 66 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHH
Confidence 6899999999999999999999 999999999988764
No 118
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.28 E-value=9.3e-13 Score=106.64 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=35.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHccC--------ccccceeEEeecCcc
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHC--------ETVRRTMHIVNLDPA 41 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~--------~~~~G~I~i~g~~~~ 41 (175)
++++|+|+||||||||+|.|+|+. .|+.|+|.++|.++.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~ 51 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG 51 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence 589999999999999999999997 789999999997653
No 119
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.24 E-value=4.4e-12 Score=115.06 Aligned_cols=145 Identities=14% Similarity=0.042 Sum_probs=98.7
Q ss_pred HHHHHHHccCccccceeEEeecCccc-------ccCCCCcc--CCcchh----------ccHHHHHHHhCCCCCC-chhh
Q 030549 17 TYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA--MDIREL----------ISLEDVMEELGLGPNG-GLIY 76 (175)
Q Consensus 17 TLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~--~~~~~~----------~~~~~~~~~~~l~~~~-~~~~ 76 (175)
|...|..+.++|..++|.++|+++.. +...+... ++..+. -...+.+..+++.... ....
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~r~~ 462 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRSA 462 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTTSBG
T ss_pred cchhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCccccccCCc
Confidence 34456667788999999999987522 11111100 111111 1123455666765321 2222
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCC--EEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCce
Q 030549 77 CMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCI 154 (175)
Q Consensus 77 ~~~~~~~~~~~~l~~~l~~~~~p~--lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~ 154 (175)
..-+..|+||..|++++.. +|+ ++|||||+........+.+.++|++++++|.|| +++||+++.+.. +|++
T Consensus 463 ~~LSGGe~QRv~LAraL~~--~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tv----ivVtHd~~~~~~-aD~i 535 (916)
T 3pih_A 463 TTLSGGESQRIRLATQIGS--GLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTV----IVVEHDEEVIRN-ADHI 535 (916)
T ss_dssp GGCCHHHHHHHHHHHHHHT--TCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEE----EEECCCHHHHHT-CSEE
T ss_pred ccCCHHHHHHHHHHHHHhh--CCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEE----EEEeCCHHHHHh-CCEE
Confidence 2234449999999999998 777 999999977777777888889999998889999 999999988754 9999
Q ss_pred eEe------ccchhhHHhhh
Q 030549 155 VCF------CCTHTVVQRAY 168 (175)
Q Consensus 155 ~~~------~~~~~~~~~~~ 168 (175)
+.| ..|..+.++++
T Consensus 536 i~lgpgag~~~G~iv~~G~~ 555 (916)
T 3pih_A 536 IDIGPGGGTNGGRVVFQGTV 555 (916)
T ss_dssp EEEESSSGGGCSEEEEEECH
T ss_pred EEEcCCcccCCCEEEEeech
Confidence 999 66666655543
No 120
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.21 E-value=4.4e-11 Score=96.44 Aligned_cols=95 Identities=20% Similarity=0.225 Sum_probs=60.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHH
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (175)
+|++++++|+|||||||+++.|++.+++..|+|.+.+.|..... ..++ ...+.+..++........ ..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~--------a~eq--L~~~~~~~gl~~~~~~s~--~~ 170 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA--------AIEQ--LKIWGERVGATVISHSEG--AD 170 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH--------HHHH--HHHHHHHHTCEEECCSTT--CC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH--------HHHH--HHHHHHHcCCcEEecCCc--cC
Confidence 37899999999999999999999999998899999887653211 0011 122334444321110000 00
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCCc
Q 030549 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ 109 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~~~~p~lliLDEP~~ 109 (175)
........+++++.. +|+++|+|||+.
T Consensus 171 ~~~v~~~al~~a~~~--~~dvvIiDtpg~ 197 (306)
T 1vma_A 171 PAAVAFDAVAHALAR--NKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHHHHHHHT--TCSEEEEEECCC
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEECCCc
Confidence 011112356677778 999999999954
No 121
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.21 E-value=1.4e-11 Score=98.90 Aligned_cols=131 Identities=11% Similarity=0.078 Sum_probs=72.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccc-eeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHH
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G-~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+|++++++|+|||||||+++.|++.+.+++| +|.+.+.++.. . ...+++ ....+..++...... ..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r------~--~a~eqL--~~~~~~~gl~~~~~~--~~- 170 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR------I--AAVEQL--KTYAELLQAPLEVCY--TK- 170 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS------T--THHHHH--HHHHTTTTCCCCBCS--SH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc------c--hHHHHH--HHHHHhcCCCeEecC--CH-
Confidence 3789999999999999999999999998888 78887766531 1 111111 112222333221111 11
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCCcEEEEEee-eccchhhhhcCCCcee
Q 030549 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLL-DSQVCIRFRTLPPCIV 155 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvli~~l~-~sH~~~~~~~~~~~~~ 155 (175)
...+..+++ .. +|+++|+|.|+..... ...+.++.+.+.. ....+++ ++ ++|...++.+.++++.
T Consensus 171 ---~~l~~al~~--~~--~~dlvIiDT~G~~~~~--~~~~~el~~~l~~~~~~~~~l--Vl~at~~~~~~~~~~~~~~ 237 (296)
T 2px0_A 171 ---EEFQQAKEL--FS--EYDHVFVDTAGRNFKD--PQYIDELKETIPFESSIQSFL--VLSATAKYEDMKHIVKRFS 237 (296)
T ss_dssp ---HHHHHHHHH--GG--GSSEEEEECCCCCTTS--HHHHHHHHHHSCCCTTEEEEE--EEETTBCHHHHHHHTTTTS
T ss_pred ---HHHHHHHHH--hc--CCCEEEEeCCCCChhh--HHHHHHHHHHHhhcCCCeEEE--EEECCCCHHHHHHHHHHHh
Confidence 122334443 36 9999999998444221 1122222222211 1111211 44 5888777777666543
No 122
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=1.2e-11 Score=100.43 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=27.0
Q ss_pred EEEECCCCCcHHHHHHHHHc-cCccccceeEEeecCc
Q 030549 5 QLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNLDP 40 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~g-l~~~~~G~I~i~g~~~ 40 (175)
+.|.||||+||||+++++++ +..|+.|++.++|.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 75 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence 78999999999999999999 8899999999987654
No 123
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.20 E-value=1.7e-11 Score=94.37 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=37.5
Q ss_pred CCCEEEEeCCCccc---ccccchHHHHHHHHHHhCCCcEEEEEeeeccchhh--------hhcCCCceeEeccc
Q 030549 98 DDDYLVFDCPGQIE---LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIR--------FRTLPPCIVCFCCT 160 (175)
Q Consensus 98 ~p~lliLDEP~~~~---~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~--------~~~~~~~~~~~~~~ 160 (175)
+|+++++|+|+... .......+..+.+.+++.|.|| ++++|...+ ++.++|.++.+...
T Consensus 128 ~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~v----i~~~h~~~~~~~~~~~~~~~~~D~vi~L~~~ 197 (247)
T 2dr3_A 128 NAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTS----IFVSQVSVGERGFGGPGVEHGVDGIIRLDLD 197 (247)
T ss_dssp TCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEE----EEEEECC----CCC-CCHHHHSSEEEEEEEE
T ss_pred CCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeE----EEEecCCCCcccccccccceeEEEEEEEEEE
Confidence 89999999993322 1111233344444456678999 888888766 45677888887654
No 124
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.19 E-value=3.3e-12 Score=102.75 Aligned_cols=35 Identities=29% Similarity=0.305 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcc-CccccceeEEeecCc
Q 030549 5 QLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLDP 40 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl-~~~~~G~I~i~g~~~ 40 (175)
++|+|+||||||||+++|+|. ..|++| +.+.|.++
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~ 56 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKI 56 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-----------------
T ss_pred EEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCccc
Confidence 589999999999999999998 888899 77766543
No 125
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.19 E-value=4.4e-12 Score=107.95 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=36.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
++++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 79999999999999999999999999999999998764
No 126
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.17 E-value=6e-11 Score=86.08 Aligned_cols=72 Identities=14% Similarity=0.056 Sum_probs=59.2
Q ss_pred HHHHHHHHHH------HHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCce
Q 030549 81 LEDNLDDWLA------EELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCI 154 (175)
Q Consensus 81 ~~~~~~~~l~------~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~ 154 (175)
.+++++..++ +++.. +|++++||||+...+....+.+.+.+++++++|.|| +++||+. ++.++++++
T Consensus 60 gGe~qrv~lA~~Lalaral~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~ti----iivsH~~-~~~~~~d~i 132 (148)
T 1f2t_B 60 GGERIALGLAFRLAMSLYLAG--EISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV----ILVSHDE-ELKDAADHV 132 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS--SCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEE----EEEESCG-GGGGGCSEE
T ss_pred HHHHHHHHHHhhhHHHHHHcC--CCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEE----EEEEChH-HHHHhCCEE
Confidence 4477777665 77888 999999999966666667777888888887678899 9999998 678999999
Q ss_pred eEecc
Q 030549 155 VCFCC 159 (175)
Q Consensus 155 ~~~~~ 159 (175)
+.+..
T Consensus 133 i~l~~ 137 (148)
T 1f2t_B 133 IRISL 137 (148)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99953
No 127
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.14 E-value=2.8e-11 Score=90.04 Aligned_cols=38 Identities=32% Similarity=0.296 Sum_probs=34.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
+|++++|+||||||||||+|+|+|. ++.|.|.+++.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDL 45 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccch
Confidence 4899999999999999999999998 6789999988654
No 128
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.14 E-value=2.5e-13 Score=112.97 Aligned_cols=149 Identities=7% Similarity=0.001 Sum_probs=82.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc------------cCccccceeEEeecCccc------------------ccCCCCcc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYR------------HCETVRRTMHIVNLDPAA------------------ENFDYPVA 50 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~g------------l~~~~~G~I~i~g~~~~~------------------~~~~~~~~ 50 (175)
+|..+||+|+||||||||+++|+| ...|+.|.+.+.|..... +..++...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 488999999999999999999999 567889999987632100 00011111
Q ss_pred CCcchhccHHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHh---hccCCC--CEEEEeCCCcccccccchHHHHHHHH
Q 030549 51 MDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEEL---DNYLDD--DYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~~p--~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
.+..+.+. ...+..+.-......... ... ...+ ..-.+| ++.++|||....+.......+..++.
T Consensus 99 ~s~~e~L~-~~fl~~ir~~d~il~Vvd--~~~-------d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~~l~~ 168 (392)
T 1ni3_A 99 ASTGVGLG-NAFLSHVRAVDAIYQVVR--AFD-------DAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRK 168 (392)
T ss_dssp CCSSSSSC-HHHHHHHTTCSEEEEEEE--CCC-------TTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHH-HHHHHHHHHHHHHHHHHh--ccc-------cceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHHHHHH
Confidence 11111110 001111100000000000 000 0000 001278 88999999444444444444556666
Q ss_pred H-HhCCCcEEEEEeeeccchhhhhcCCCcee-Eeccc-hhhHH
Q 030549 126 L-KSRNFNVCAVYLLDSQVCIRFRTLPPCIV-CFCCT-HTVVQ 165 (175)
Q Consensus 126 l-~~~g~tvli~~l~~sH~~~~~~~~~~~~~-~~~~~-~~~~~ 165 (175)
. .+.|.|+ + +|.+.++.++|+++. ++..+ ..++.
T Consensus 169 ~~~~~g~ti----~--sh~~~~~~~l~~~i~~~L~~G~~~~~~ 205 (392)
T 1ni3_A 169 ITSRGANTL----E--MKAKKEEQAIIEKVYQYLTETKQPIRK 205 (392)
T ss_dssp TTCCSSCSS----S--HHHHHHHHHHHHHHHHHHHTTCSCGGG
T ss_pred HHHhcCCcc----c--cccHHHHHHHHHHHHHHhccCCceeec
Confidence 5 5556666 4 999999999999988 77777 55543
No 129
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.12 E-value=1e-10 Score=93.85 Aligned_cols=92 Identities=18% Similarity=0.067 Sum_probs=61.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCc-hhhhHH
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGG-LIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~ 79 (175)
+|++++++|+|||||||+++.+++++.+..|+|.+.+.+++..... ++ ...+.+..++..... .....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~--------~q--l~~~~~~~~l~~~~~~~~~~p- 165 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR--------EQ--LRLLGEKVGVPVLEVMDGESP- 165 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH--------HH--HHHHHHHHTCCEEECCTTCCH-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH--------HH--HHHhcccCCeEEEEcCCCCCH-
Confidence 4899999999999999999999999999999999998876432110 11 112334444432110 00111
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCC
Q 030549 80 HLEDNLDDWLAEELDNYLDDDYLVFDCP 107 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP 107 (175)
.+.++..++.+... +++++|+|||
T Consensus 166 --~~l~~~~l~~~~~~--~~D~viiDtp 189 (295)
T 1ls1_A 166 --ESIRRRVEEKARLE--ARDLILVDTA 189 (295)
T ss_dssp --HHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred --HHHHHHHHHHHHhC--CCCEEEEeCC
Confidence 12235566666667 8999999999
No 130
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.12 E-value=1.1e-10 Score=97.78 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=23.9
Q ss_pred EEEECCCCCcHHHHHHHHHccCccccc
Q 030549 5 QLVIGPAGSGKSTYCSSLYRHCETVRR 31 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~~~~G 31 (175)
++|+|+||||||||+++|+|...+..|
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~~~~~ 60 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDLYSPE 60 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCCC
Confidence 699999999999999999999875444
No 131
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.12 E-value=1.3e-11 Score=93.63 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=35.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc---ccceeEEeecCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~---~~G~I~i~g~~~ 40 (175)
+|++++|+||||||||||+++|+|+++| +.|.|.++|...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 4899999999999999999999999986 478888877654
No 132
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.11 E-value=2.7e-11 Score=97.52 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=36.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc--cccceeEE---eecC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHI---VNLD 39 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~--~~~G~I~i---~g~~ 39 (175)
+|+++||+||||||||||+++|+|+++ |++|+|.+ +|..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 489999999999999999999999988 99999999 7654
No 133
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.10 E-value=3.1e-11 Score=90.05 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=27.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccce
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRT 32 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~ 32 (175)
|++++|+||||||||||+++|+|++++..|.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~ 31 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGF 31 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceE
Confidence 6899999999999999999999999854444
No 134
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.09 E-value=4.3e-11 Score=96.13 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=28.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE---eecCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i---~g~~~ 40 (175)
+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|.+.
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~ 210 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHT 210 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------C
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCc
Confidence 48999999999999999999999999999999999 77664
No 135
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.08 E-value=5.3e-11 Score=97.11 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=39.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~ 42 (175)
+|++++|+|+||||||||+++|+|+++|++|+|.+.+.++..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 489999999999999999999999999999999999988743
No 136
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.06 E-value=2.3e-10 Score=96.01 Aligned_cols=26 Identities=35% Similarity=0.635 Sum_probs=24.0
Q ss_pred CCeE--EEEECCCCCcHHHHHHHHHccC
Q 030549 1 MGYA--QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei--~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+|++ ++|+||||||||||+|+|+|+.
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 4899 9999999999999999999984
No 137
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.06 E-value=5.9e-11 Score=89.23 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC-----ccccceeEE
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHC-----ETVRRTMHI 35 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~-----~~~~G~I~i 35 (175)
+|+.++|+|+||||||||++.++|.. .|+.|.+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 48899999999999999999999998 788887654
No 138
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.05 E-value=4e-10 Score=102.31 Aligned_cols=103 Identities=9% Similarity=-0.049 Sum_probs=79.4
Q ss_pred HHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCC--CCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEe
Q 030549 62 VMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLD--DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (175)
Q Consensus 62 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~--p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l 138 (175)
.++.++++.. .......-+..++||..|++++.. + |+++|||||+........+.+.++|+++++.|.|| +
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~--~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TV----I 560 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGS--RLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTL----I 560 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTT--CCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEE----E
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhh--CCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEE----E
Confidence 4566777532 222222234459999999999998 7 48999999977777777888889999998889999 9
Q ss_pred eeccchhhhhcCCCceeEe------ccchhhHHhhhhcc
Q 030549 139 LDSQVCIRFRTLPPCIVCF------CCTHTVVQRAYSFL 171 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 171 (175)
+++|+++++. .+|+++.| ..|.++.++++.-+
T Consensus 561 vVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~ 598 (972)
T 2r6f_A 561 VVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEV 598 (972)
T ss_dssp EECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTT
T ss_pred EEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHH
Confidence 9999999875 79999999 56777777665443
No 139
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.04 E-value=5.8e-12 Score=97.61 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=29.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 46789999999999999999999999999999988765
No 140
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.04 E-value=5.5e-11 Score=89.81 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+|++++|+||||||||||+++|+|+++
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 489999999999999999999999875
No 141
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.03 E-value=1.4e-10 Score=87.07 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=29.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeec
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~ 38 (175)
+|++++|+||||||||||+++|+|+.+ .+.+.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~ 39 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA----EIKISIS 39 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEece
Confidence 499999999999999999999999975 4665553
No 142
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.03 E-value=1.4e-10 Score=97.31 Aligned_cols=40 Identities=30% Similarity=0.253 Sum_probs=37.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
+|++++|+||||||||||+++|+|+++|++|+|.+.+.++
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 4889999999999999999999999999999999988765
No 143
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.02 E-value=4e-10 Score=102.55 Aligned_cols=83 Identities=13% Similarity=0.018 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHhhccCC--CCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEe
Q 030549 80 HLEDNLDDWLAEELDNYLD--DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~--p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
+..++||..|++++.. + |+++|||||+........+.+.++|+++++.|.|| ++++|+++++. .+|+++.|
T Consensus 523 SGGEkQRV~LA~aL~~--~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TV----IvVeHdl~~i~-~ADrIi~L 595 (993)
T 2ygr_A 523 SGGEAQRIRLATQIGS--GLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTL----IVVEHDEDTIE-HADWIVDI 595 (993)
T ss_dssp CHHHHHHHHHHHHHTT--CCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE----EEECCCHHHHH-TCSEEEEE
T ss_pred CHHHHHHHHHHHHHhh--CCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEE----EEECCCHHHHH-hCCEEEEe
Confidence 3448999999999998 7 58999999977766777778888999999899999 99999998875 79999999
Q ss_pred ------ccchhhHHhhhh
Q 030549 158 ------CCTHTVVQRAYS 169 (175)
Q Consensus 158 ------~~~~~~~~~~~~ 169 (175)
..|..+.++++.
T Consensus 596 gp~aG~~gG~iv~~G~~~ 613 (993)
T 2ygr_A 596 GPGAGEHGGRIVHSGPYD 613 (993)
T ss_dssp CSSSGGGCCSCCEEECHH
T ss_pred cCccccCCCEEEEeeCHH
Confidence 466776666554
No 144
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.00 E-value=2.2e-10 Score=92.11 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=31.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE---eecCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i---~g~~~ 40 (175)
+|++++|+||||||||||+|+|+ +.+|++|+|.+ .|.+.
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~ 205 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHT 205 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------C
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCc
Confidence 48999999999999999999999 99999999999 77654
No 145
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.00 E-value=1.2e-10 Score=89.51 Aligned_cols=28 Identities=25% Similarity=0.513 Sum_probs=18.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH-ccCcc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLY-RHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~-gl~~~ 28 (175)
+|++++|+||||||||||+++|+ |++++
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----C
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 58999999999999999999999 99854
No 146
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.99 E-value=1.1e-09 Score=98.65 Aligned_cols=103 Identities=16% Similarity=-0.022 Sum_probs=77.4
Q ss_pred HHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCC--CEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEe
Q 030549 62 VMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDD--DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (175)
Q Consensus 62 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p--~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l 138 (175)
.+..++++.. .......-+..++|+..|++++.. +| .++|||||+........+.+.+++++++++|.|| +
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~--~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TV----I 435 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYS--NLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSL----F 435 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTT--CCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEE----E
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhh--CCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEE----E
Confidence 3455666532 222222223449999999999999 88 5999999977777777788888999998889999 9
Q ss_pred eeccchhhhhcCCCceeEe------ccchhhHHhhhhcc
Q 030549 139 LDSQVCIRFRTLPPCIVCF------CCTHTVVQRAYSFL 171 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 171 (175)
+++|+++.+ ..+|+++.| ..|..+.++++.-+
T Consensus 436 vVeHdl~~l-~~aD~ii~lgpgaG~~~G~iv~~g~~~~~ 473 (842)
T 2vf7_A 436 VVEHDLDVI-RRADWLVDVGPEAGEKGGEILYSGPPEGL 473 (842)
T ss_dssp EECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECGGGG
T ss_pred EEcCCHHHH-HhCCEEEEeCCCcccCCCEEEEecCHHHH
Confidence 999999865 579999999 56666666555433
No 147
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.98 E-value=2.8e-10 Score=93.58 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=30.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc-cccceeEEe-ecC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIV-NLD 39 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-~~~G~I~i~-g~~ 39 (175)
+|++++|+||||||||||+|+|+|+.+ |.+|+|.+. |..
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g 254 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLG 254 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCC
Confidence 489999999999999999999999999 999999986 543
No 148
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.97 E-value=2.9e-10 Score=84.40 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=33.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-ccceeEEeecCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-~~G~I~i~g~~~ 40 (175)
+|++++|+||||||||||+++|++..++ ..|.|.....++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~ 44 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPP 44 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCC
Confidence 5899999999999999999999999874 667776655444
No 149
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.95 E-value=4e-10 Score=96.67 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=36.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~ 39 (175)
+|++++|+||||||||||+++|+|+++|++|.|++.|.+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 488999999999999999999999999999999998764
No 150
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.93 E-value=1.1e-10 Score=94.24 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE---eecCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i---~g~~~ 40 (175)
+|++++|+||||||||||+|+|+|+.+|.+|+|.+ .|+..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~t 214 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHT 214 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCccc
Confidence 48999999999999999999999999999999998 66553
No 151
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.91 E-value=6.2e-10 Score=83.79 Aligned_cols=36 Identities=19% Similarity=0.116 Sum_probs=32.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
+|++++|+||||||||||+++|++.+ |.+.+++.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence 48999999999999999999999987 8899988764
No 152
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.89 E-value=2.3e-10 Score=89.52 Aligned_cols=40 Identities=25% Similarity=0.310 Sum_probs=36.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH---ccCccccceeE--------EeecCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLY---RHCETVRRTMH--------IVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~---gl~~~~~G~I~--------i~g~~~ 40 (175)
+|++++|+|||||||||++|+|+ |+..+++|.+. .+|.++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~ 76 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDI 76 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCc
Confidence 48899999999999999999999 99999999998 666654
No 153
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.88 E-value=2.1e-10 Score=85.07 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=31.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccc---cceeEEeecC
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLD 39 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~---~G~I~i~g~~ 39 (175)
++++|+|+||||||||+++|+|+++|+ .|.|.++|.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 689999999999999999999999998 8999998876
No 154
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.88 E-value=6.8e-10 Score=83.57 Aligned_cols=40 Identities=25% Similarity=0.260 Sum_probs=35.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcccccee--EEeecCcc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTM--HIVNLDPA 41 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I--~i~g~~~~ 41 (175)
+|++++|+|||||||||++++|++.++ ..|.+ +++|.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 489999999999999999999999998 78988 88876543
No 155
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.86 E-value=6.3e-09 Score=87.14 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=29.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcc-----------CccccceeEEee
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRH-----------CETVRRTMHIVN 37 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl-----------~~~~~G~I~i~g 37 (175)
|++++|+|+||||||||+++|+|. +.|+.|.+.+++
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~ 203 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE 203 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC
Confidence 788999999999999999999998 345556665543
No 156
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.86 E-value=1.4e-09 Score=83.67 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=32.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
+|++++|.|+||||||||+++|+|+ .|+|.+.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 4899999999999999999999998 78899988764
No 157
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.86 E-value=9.8e-10 Score=82.88 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=35.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
+|++++|+|+||||||||+++|++++++..|.+.+.+.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 3789999999999999999999999998899998876653
No 158
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.86 E-value=5.3e-09 Score=85.70 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=29.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
+|+++.|.||||||||||+..++.......|.+.+..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4899999999999999999888876655556655543
No 159
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.84 E-value=2.5e-09 Score=90.28 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=32.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccc-eeEEeecC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLD 39 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G-~I~i~g~~ 39 (175)
+|+++.|.|+||+|||||+..+++...+..| .|.+.+.+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 4899999999999999999999998776556 57665543
No 160
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.84 E-value=1.6e-09 Score=81.18 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=28.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G 31 (175)
+|++++|+|||||||||++++|+++..|+.|
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 4899999999999999999999999977666
No 161
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.78 E-value=4e-09 Score=79.99 Aligned_cols=39 Identities=23% Similarity=0.401 Sum_probs=31.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-ccceeEEeecC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLD 39 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-~~G~I~i~g~~ 39 (175)
+|++++|+||||||||||++.|++.+++ ..+.+.....+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~ 46 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRL 46 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEeccccc
Confidence 4899999999999999999999999986 44555544433
No 162
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.75 E-value=4.7e-09 Score=76.92 Aligned_cols=36 Identities=19% Similarity=0.149 Sum_probs=31.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
+|++++|+|+|||||||++++|++.+ |.+.+++.++
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 48999999999999999999999875 7788887654
No 163
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.74 E-value=8.2e-09 Score=77.65 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=25.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
-+++|+|+|||||||++++|+++ |...+++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l-----g~~~id~ 32 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL-----GVPLVDA 32 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence 47999999999999999999983 5556654
No 164
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.74 E-value=1.6e-08 Score=85.08 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=35.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
+.+++++|+|||||||++..|++.+.+..++|.+.+.|+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 679999999999999999999999998888998877664
No 165
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.69 E-value=7.6e-09 Score=76.27 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=26.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccce
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRT 32 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~ 32 (175)
+.+|+||||||||||+++|++++.+..|.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 89999999999999999999988776654
No 166
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.69 E-value=7.6e-09 Score=78.34 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=25.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+|++++|+||||||||||++.|++..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 489999999999999999999999876
No 167
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.69 E-value=6.2e-08 Score=79.55 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=31.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
+|+++.|.||||||||||+..+++...+..|.+.+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~Vly 94 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAF 94 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 48999999999999999999999998877787644
No 168
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.68 E-value=2.4e-08 Score=85.53 Aligned_cols=71 Identities=11% Similarity=-0.127 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhhccCCC--CEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEecc
Q 030549 82 EDNLDDWLAEELDNYLDD--DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 82 ~~~~~~~l~~~l~~~~~p--~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
+++++..|++++.. +| +++|||||....+......+.++|+++++ |.|| +++||+++.+. .||+++++..
T Consensus 401 G~~qrv~la~~l~~--~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~v----i~itH~~~~~~-~~d~~~~~~~ 472 (517)
T 4ad8_A 401 GELSRVMLAVSTVL--GADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQV----LVVTHLAQIAA-RAHHHYKVEK 472 (517)
T ss_dssp SHHHHHHHHHHHHH--CCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEE----EEECCCHHHHH-HSSEEEEEEC
T ss_pred HHHHHHHHHHHHHh--CCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEE----EEEecCHHHHH-hCCEEEEEec
Confidence 38999999999999 99 99999999666666667788889999876 8999 99999998775 6999999954
Q ss_pred c
Q 030549 160 T 160 (175)
Q Consensus 160 ~ 160 (175)
+
T Consensus 473 ~ 473 (517)
T 4ad8_A 473 Q 473 (517)
T ss_dssp C
T ss_pred c
Confidence 3
No 169
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.66 E-value=9.9e-09 Score=74.87 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=28.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
||++++|+|+|||||||++++|++.+.+ ..+++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998764 45553
No 170
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.65 E-value=1.1e-08 Score=76.19 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=31.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccCcc-----------ccceeEEeecC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCET-----------VRRTMHIVNLD 39 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~-----------~~G~I~i~g~~ 39 (175)
.++|+|+||||||||++.++|...+ ++|+|.++|.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 77 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEE
Confidence 5899999999999999999998765 57888887754
No 171
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.65 E-value=6.6e-09 Score=89.85 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=35.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccc-eeE-EeecCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMH-IVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G-~I~-i~g~~~ 40 (175)
+|++++|+|+||||||||+|+|+|.+.|++| ++. ++|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 4899999999999999999999999999886 785 666544
No 172
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.64 E-value=1.4e-08 Score=82.27 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=30.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc--cccceeEEeecC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLD 39 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~--~~~G~I~i~g~~ 39 (175)
++||+||||||||||+++|+++++ |++|.+.+.+.+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D 131 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD 131 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence 899999999999999999999987 567886664443
No 173
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.64 E-value=1.1e-07 Score=77.38 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=24.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCETV 29 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~ 29 (175)
.+.|.||+|+|||||++.+++...+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 79999999999999999999988765
No 174
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.61 E-value=2.1e-08 Score=82.00 Aligned_cols=41 Identities=22% Similarity=0.464 Sum_probs=36.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~ 42 (175)
+.+++|+|++|||||||++.++|..++.+|+|.+.+.++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 67999999999999999999999999999999999888754
No 175
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.59 E-value=2.8e-08 Score=78.68 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=30.3
Q ss_pred EEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030549 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
++|+||||||||||+|+|+|...+ |.+.++|.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l 80 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPEL 80 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHH
Confidence 899999999999999999999877 6888887654
No 176
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.59 E-value=4.6e-08 Score=79.28 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=25.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCcccc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVR 30 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~ 30 (175)
+..+.|.||+|+|||||++.+++..++..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 56799999999999999999999876543
No 177
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.54 E-value=1.7e-07 Score=80.22 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=34.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc--cCccccceeEEeecCccc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYR--HCETVRRTMHIVNLDPAA 42 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~g--l~~~~~G~I~i~g~~~~~ 42 (175)
|.-+.|.|++||||||++++|.. +.+++.|++.+...|+..
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 45689999999999999999876 666777889888777653
No 178
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.54 E-value=4.4e-08 Score=79.34 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=37.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~ 41 (175)
+|++++++|+|||||||++..|++.+.+..|+|.+.+.|+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 37899999999999999999999999999999999888763
No 179
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.53 E-value=1.8e-08 Score=76.59 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=29.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC---ccccceeEE
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHC---ETVRRTMHI 35 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~---~~~~G~I~i 35 (175)
+.+++|+||+||||||++++|++.+ .++.|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999876 677888765
No 180
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.52 E-value=2.1e-08 Score=86.48 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=33.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
+|++++|+||||+|||||+|+|++...+..|+|.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 4789999999999999999999999988888886655
No 181
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.52 E-value=4.8e-08 Score=72.83 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=29.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc-----c------ccceeEEeecC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCE-----T------VRRTMHIVNLD 39 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~-----~------~~G~I~i~g~~ 39 (175)
.++|+|+||||||||++.++|... | ..|++.++|.+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 53 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 53 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE
Confidence 479999999999999999999842 2 35778877653
No 182
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.51 E-value=2.6e-07 Score=77.71 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=22.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCc
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.-+.|.||+|+|||||+++|++...
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999998764
No 183
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.50 E-value=5.3e-08 Score=71.64 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=32.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccc--eeEEeecCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G--~I~i~g~~~ 40 (175)
+|++++|+|++||||||+++.+++.+++ .| .+.+++...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 4899999999999999999999998866 56 566666543
No 184
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.47 E-value=5e-07 Score=76.84 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030549 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.|.||+|+|||||+|++++..
T Consensus 52 vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999854
No 185
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.47 E-value=3.9e-07 Score=67.48 Aligned_cols=73 Identities=8% Similarity=-0.012 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhhc--cCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEe
Q 030549 80 HLEDNLDDWLAEELDN--YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~--~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
+.+++++..++++++. +.+|++++||||....+..+...+.++++++.+ +.++ +++||+.. ....+|+++.+
T Consensus 66 SgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~----ivith~~~-~~~~ad~i~~v 139 (173)
T 3kta_B 66 SGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQF----IVITLRDV-MMANADKIIGV 139 (173)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEE----EEECSCHH-HHTTCSEEEEE
T ss_pred CHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEE----EEEEecHH-HHHhCCEEEEE
Confidence 3458899999998763 126799999999666666667778888888754 4577 88899865 45789988866
Q ss_pred c
Q 030549 158 C 158 (175)
Q Consensus 158 ~ 158 (175)
.
T Consensus 140 ~ 140 (173)
T 3kta_B 140 S 140 (173)
T ss_dssp E
T ss_pred E
Confidence 4
No 186
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.46 E-value=7e-08 Score=80.75 Aligned_cols=72 Identities=13% Similarity=0.106 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhc--cCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEecc
Q 030549 83 DNLDDWLAEELDN--YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 83 ~~~~~~l~~~l~~--~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
++++..++++++. +.+||+++||||....+..+...+.++++++.+++.++ +++||+.. ....+|+++.+.-
T Consensus 338 q~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~----ii~th~~~-~~~~~d~~~~~~~ 411 (430)
T 1w1w_A 338 EKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQF----IVISLKNT-MFEKSDALVGVYR 411 (430)
T ss_dssp HHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEE----EEECSCHH-HHTTCSEEEEEEE
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEE----EEEECCHH-HHHhCCEEEEEEE
Confidence 6677777887762 12899999999966666767777888888876557889 99999955 5578998888764
No 187
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.42 E-value=1.1e-07 Score=77.34 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=37.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~ 42 (175)
+|.+++++|+||||||||++.|++.+.+..|++.+.+.++..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 378999999999999999999999999989999988777643
No 188
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.40 E-value=4e-08 Score=79.66 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=31.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHccC----ccccceeEEeecC
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHC----ETVRRTMHIVNLD 39 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~----~~~~G~I~i~g~~ 39 (175)
+.++|.||||+|||||+++|+|.+ .+.+|.+...+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~ 92 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGD 92 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHH
Confidence 679999999999999999999998 6778877665543
No 189
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.38 E-value=1.1e-07 Score=71.84 Aligned_cols=39 Identities=26% Similarity=0.274 Sum_probs=34.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccc--eeEEeecC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLD 39 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G--~I~i~g~~ 39 (175)
+|.+++|+|++||||||+++.|++.++|..| .+.+++..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 4889999999999999999999999987888 77776543
No 190
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.38 E-value=5.3e-07 Score=75.39 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=25.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCcccc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVR 30 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~ 30 (175)
|++++|+||||||||||+++|+++..+.+
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 78999999999999999999999887644
No 191
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.36 E-value=2.3e-07 Score=71.85 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=28.4
Q ss_pred EEEECCCCCcHHHHHHHHHccCccccceeEEeecC
Q 030549 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~ 39 (175)
++|+||||||||||+++|++... .|.+.+++.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~ 84 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSD 84 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHH
Confidence 78999999999999999999875 6777776643
No 192
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.35 E-value=2.5e-07 Score=69.53 Aligned_cols=27 Identities=26% Similarity=0.360 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+|.+++|+|++||||||+++.|++.++
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999999999874
No 193
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.33 E-value=2.5e-07 Score=82.91 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=24.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCcccc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVR 30 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~ 30 (175)
|+.+.++||+||||||++.++++...+..
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~~~~~~ 137 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLFDEMPH 137 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHCGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 67899999999999999999877654443
No 194
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.33 E-value=3e-07 Score=72.33 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=28.6
Q ss_pred EEEECCCCCcHHHHHHHHHccCccccceeEEeecC
Q 030549 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~ 39 (175)
++|+||||||||||+++|++..+ .|.+.+++.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~ 108 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSD 108 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHH
T ss_pred EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHH
Confidence 79999999999999999999885 6778776643
No 195
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.30 E-value=3.5e-07 Score=67.61 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=30.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
+|.+++|+|++||||||+++.|++.+.+..+.+.+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~ 46 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEV 46 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 48899999999999999999999998877777644
No 196
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.26 E-value=1.6e-06 Score=71.25 Aligned_cols=68 Identities=10% Similarity=0.094 Sum_probs=51.3
Q ss_pred HHHHH------HHHHHhhccCC-CCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCcee
Q 030549 83 DNLDD------WLAEELDNYLD-DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIV 155 (175)
Q Consensus 83 ~~~~~------~l~~~l~~~~~-p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~ 155 (175)
++++. .+++++.. + |++++||||....+......+.+.++++. ++.+| +++||+.+ +..++++++
T Consensus 285 ~~~~~~lal~la~a~~l~~--~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~v----i~~th~~~-~~~~~d~~~ 356 (371)
T 3auy_A 285 EQIAVALSLRLAIANALIG--NRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQM----IIITHHRE-LEDVADVII 356 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHS--SCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEE----EEEESCGG-GGGGCSEEE
T ss_pred HHHHHHHHHHHHHHHHHhc--CCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeE----EEEEChHH-HHhhCCEEE
Confidence 56655 34566677 8 99999999966666666667777777763 34678 89999976 788999988
Q ss_pred Eec
Q 030549 156 CFC 158 (175)
Q Consensus 156 ~~~ 158 (175)
.+.
T Consensus 357 ~l~ 359 (371)
T 3auy_A 357 NVK 359 (371)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 197
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.26 E-value=1.5e-06 Score=65.71 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=24.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCETV 29 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~ 29 (175)
+..+.|.||+|+|||||++.++......
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999999876543
No 198
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.26 E-value=2.1e-06 Score=77.26 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=24.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCcc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
|+.+.|+||||+|||||+++|++.++.
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 678999999999999999999998754
No 199
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.24 E-value=3.6e-06 Score=62.69 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=24.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccc
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G 31 (175)
..+.|.||+|+|||||+++++........
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~ 83 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNV 83 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999987754333
No 200
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.24 E-value=7.3e-07 Score=74.77 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=37.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~ 41 (175)
+|++++++|+|||||||++..|++.+.+..|+|.+.+.|+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 47899999999999999999999999999999999887753
No 201
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.24 E-value=5.6e-07 Score=74.39 Aligned_cols=32 Identities=25% Similarity=0.212 Sum_probs=27.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
+|++++|+||||||||||+++|+|. .+|++..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~ 199 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL---CGGKALN 199 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH---HCCEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEE
Confidence 4889999999999999999999985 4677654
No 202
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=7.9e-07 Score=66.53 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+|++++|+|++||||||+.+.|++.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999999865
No 203
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.19 E-value=7e-07 Score=71.50 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=36.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~ 41 (175)
|++++++|+||+||||++..+++.+.+..+++.+.+.+++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 7899999999999999999999999988899999887764
No 204
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.18 E-value=9.9e-07 Score=63.52 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~g 24 (175)
.+.+|+|||||||||++.+|.-
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999974
No 205
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.17 E-value=7.6e-07 Score=66.54 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
+++|+|+|||||||+++.|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999993
No 206
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.17 E-value=1.6e-05 Score=62.57 Aligned_cols=26 Identities=27% Similarity=0.629 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+..+.|.||+|+||||+++++++...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999998763
No 207
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.17 E-value=1.4e-06 Score=75.93 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=34.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcccc-ceeEEeecCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~-G~I~i~g~~~ 40 (175)
.|+.+.|+||||+|||||+++|+++.++.. |.+.+.+.+.
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence 378899999999999999999999999877 7777766543
No 208
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.17 E-value=6.1e-07 Score=71.60 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=26.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCETV 29 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~ 29 (175)
+.+++|.|++|||||||++.|++++++.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 6899999999999999999999999763
No 209
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.15 E-value=8.8e-07 Score=66.24 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=26.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeec
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~ 38 (175)
..+++|+|++||||||+.+.|++.+ |...+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCC
Confidence 3579999999999999999998875 44555543
No 210
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.15 E-value=9.2e-07 Score=69.16 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+|++++|+|++||||||+.++|++.+.
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 489999999999999999999998653
No 211
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.15 E-value=9.8e-07 Score=66.28 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+|.+++|+||+||||||+.+.|+..++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 378999999999999999999998774
No 212
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.14 E-value=1.7e-06 Score=66.52 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=30.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEe
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~ 36 (175)
+|.+++|.|++||||||+++.|+..+.+ .+.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 4889999999999999999999999887 6666544
No 213
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.12 E-value=8.3e-07 Score=65.22 Aligned_cols=24 Identities=42% Similarity=0.724 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~g 24 (175)
+|.+++|+|++||||||+.+.|+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999999985
No 214
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.11 E-value=9.2e-06 Score=66.07 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl 25 (175)
+|+++.|.||+|||||||+..++..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999999885
No 215
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.09 E-value=6.7e-06 Score=66.99 Aligned_cols=37 Identities=11% Similarity=0.138 Sum_probs=28.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
+|+.+.|.|++|+|||||+..++.......+.|.+..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4899999999999999999988876544445555543
No 216
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.09 E-value=9.8e-06 Score=66.41 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=27.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeE-Eee
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-IVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~-i~g 37 (175)
+|+++.|.|++|+|||||+..++.......+.+. ++.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4889999999999999999888765543334443 443
No 217
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.07 E-value=8.4e-06 Score=65.23 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=23.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccc
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHCETV 29 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~ 29 (175)
..+.|.||+|+|||||++++++.....
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 468899999999999999999977554
No 218
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.07 E-value=2.2e-06 Score=71.88 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=30.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc------------cccceeEEeecC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCE------------TVRRTMHIVNLD 39 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~------------~~~G~I~i~g~~ 39 (175)
.++|+|+||||||||++.++|... +.+|.+.++|.+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 689999999999999999999854 566888887754
No 219
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.06 E-value=2.4e-06 Score=70.28 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=29.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc-----------cccceeEEeecC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCE-----------TVRRTMHIVNLD 39 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~-----------~~~G~I~i~g~~ 39 (175)
+++|+|+||||||||++.++|... +..|.+.++|.+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~ 227 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK 227 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE
Confidence 389999999999999999999865 456788777654
No 220
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.04 E-value=2.4e-06 Score=70.98 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=29.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcc-----------CccccceeEEee
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRH-----------CETVRRTMHIVN 37 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl-----------~~~~~G~I~i~g 37 (175)
|..++|+|+||+|||||+++|+|. ..|..|.+.+.+
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 567999999999999999999998 567777776644
No 221
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.03 E-value=1.1e-05 Score=62.09 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEe
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~ 36 (175)
+|.++.+.|+.||||||++--++.-+....-.+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 388999999999999997765554443322345443
No 222
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.02 E-value=1.6e-06 Score=66.54 Aligned_cols=33 Identities=27% Similarity=0.243 Sum_probs=26.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC---cccccee
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHC---ETVRRTM 33 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~---~~~~G~I 33 (175)
+|.+++|+|++||||||+.+.|++.+ .++.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~ 50 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 50 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence 37899999999999999999998733 3444544
No 223
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.02 E-value=2.7e-06 Score=61.94 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+|..++|+|++|+|||||++.++|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47889999999999999999999864
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.00 E-value=3.2e-05 Score=65.08 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=30.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~ 39 (175)
+.++.++|++||||||++..|+..+.....++.+-.-|
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 56899999999999999999998887655566665444
No 225
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.98 E-value=4.3e-06 Score=61.03 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++++|++|||||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 226
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.97 E-value=3.9e-06 Score=63.35 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHH
Q 030549 3 YAQLVIGPAGSGKSTYCSSLY 23 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~ 23 (175)
.+.+|+|||||||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 478999999999999999985
No 227
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.97 E-value=4.4e-06 Score=60.84 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+|.++.|.|++||||||+.+.|+..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 478899999999999999999998764
No 228
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.96 E-value=5.7e-06 Score=59.56 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999653
No 229
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.96 E-value=3.7e-05 Score=61.88 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+|+++.|.||+|||||||+..++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 48999999999999999999988753
No 230
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.94 E-value=4.1e-06 Score=65.07 Aligned_cols=37 Identities=22% Similarity=0.155 Sum_probs=29.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
|.++.|+|++||||||+.+.|+..+. .+.+.+++...
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 67899999999999999999998764 24566666443
No 231
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.94 E-value=4.3e-06 Score=61.27 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccCcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
.++|+|++|+|||||++.++|..++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 4799999999999999999997433
No 232
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.93 E-value=3.7e-06 Score=62.22 Aligned_cols=27 Identities=19% Similarity=0.065 Sum_probs=23.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccc
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHCETV 29 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~ 29 (175)
.+++|+|++|||||||++.|.+.+++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 478999999999999999999987654
No 233
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.88 E-value=1.5e-05 Score=64.36 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCcc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+..+.|.||+|+|||||++.++.....
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 446899999999999999999987644
No 234
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.87 E-value=7.6e-06 Score=58.97 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987643
No 235
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.87 E-value=5.9e-06 Score=66.02 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.+++|+|+||||||||++.++|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4589999999999999999999974
No 236
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.86 E-value=0.00016 Score=56.46 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCc
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.-+.|.||+|+|||||+++++....
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4588999999999999999998753
No 237
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.86 E-value=5e-05 Score=58.52 Aligned_cols=46 Identities=30% Similarity=0.423 Sum_probs=33.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCc
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPV 49 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~ 49 (175)
-++++.|+.|+|||||+..++..+. ..-++.+-+.+++.....+.+
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~ 60 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEP 60 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCC
Confidence 4789999999999999999997766 444677766666544433333
No 238
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.86 E-value=4.4e-06 Score=64.68 Aligned_cols=30 Identities=37% Similarity=0.387 Sum_probs=23.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcc---Ccccccee
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH---CETVRRTM 33 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl---~~~~~G~I 33 (175)
+++|.||+||||||+.+.|+.. ...+.|.+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 8999999999999999999844 33444444
No 239
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.85 E-value=3.7e-06 Score=67.88 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=28.5
Q ss_pred CeE--EEEECCCCCcHHHHHHHHHccCccccceeEEe
Q 030549 2 GYA--QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (175)
Q Consensus 2 Gei--~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~ 36 (175)
|++ +.+.||+|+||||+++++++.+.+..+.+.+.
T Consensus 44 g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 80 (340)
T 1sxj_C 44 GKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80 (340)
T ss_dssp TCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEE
Confidence 566 89999999999999999999887665554333
No 240
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.84 E-value=9.6e-06 Score=59.42 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987543
No 241
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.82 E-value=6.9e-05 Score=61.59 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=27.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
+|+++.|.|++|+|||||+..++.......+.+.+..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 4889999999999999999877654433344555443
No 242
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.82 E-value=1.2e-05 Score=59.41 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl 25 (175)
|.+++|+|++||||||+.+.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 678999999999999999999876
No 243
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.82 E-value=1.4e-05 Score=65.59 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=29.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc-----------cCccccceeEEee
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYR-----------HCETVRRTMHIVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~g-----------l~~~~~G~I~i~g 37 (175)
||-.++|+|.+|+|||||++.+++ -+.|..|.+.+.+
T Consensus 1 m~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 577899999999999999999998 2346667666544
No 244
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.81 E-value=1.3e-05 Score=58.12 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~g 24 (175)
|..++.|.|++||||||+.+.|+.
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHh
Confidence 345789999999999999999987
No 245
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.81 E-value=3.2e-06 Score=72.38 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
+.+|+|+||||||||+.+|..+
T Consensus 62 ~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 62 FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp EEEEEESHHHHHHHHTHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 8999999999999999999666
No 246
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.81 E-value=1.3e-05 Score=61.46 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=24.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccce
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRT 32 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~ 32 (175)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 48999999999999999999987765553
No 247
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.81 E-value=1.2e-05 Score=60.60 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~g 24 (175)
+-+++|.|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 248
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.79 E-value=1.2e-05 Score=57.65 Aligned_cols=19 Identities=42% Similarity=0.658 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 030549 4 AQLVIGPAGSGKSTYCSSL 22 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i 22 (175)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 249
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.79 E-value=1.4e-05 Score=59.06 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999854
No 250
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.79 E-value=1.3e-05 Score=68.51 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=28.6
Q ss_pred EEEECCCCCcHHHHHHHHHccCccccceeEEeecC
Q 030549 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~ 39 (175)
+.|+||||+|||||+|+|++... .+.+.+++.+
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~ 99 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSD 99 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhH
Confidence 78999999999999999999875 5778777654
No 251
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.78 E-value=1.3e-05 Score=58.95 Aligned_cols=26 Identities=23% Similarity=0.255 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+|.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998644
No 252
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.77 E-value=0.00013 Score=58.49 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl 25 (175)
+|+++.|.|++|+|||||+..++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4899999999999999999888754
No 253
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.77 E-value=1.3e-05 Score=62.34 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHccC
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.+++|+||||||||||.+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998754
No 254
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.77 E-value=0.00031 Score=53.87 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-+.|.||+|+||||++++++...
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999998854
No 255
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.76 E-value=3.9e-06 Score=62.83 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=25.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccceeE
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMH 34 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~ 34 (175)
+++|.|++||||||+++.|+..+.+....+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~ 32 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA 32 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 6899999999999999999988765433443
No 256
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.76 E-value=1.5e-05 Score=64.99 Aligned_cols=31 Identities=26% Similarity=0.229 Sum_probs=26.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc--cCccccceeE
Q 030549 4 AQLVIGPAGSGKSTYCSSLYR--HCETVRRTMH 34 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~g--l~~~~~G~I~ 34 (175)
.++|+|++|||||||++.++| ++++.+|.++
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 589999999999999999999 5677667654
No 257
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.76 E-value=1.7e-05 Score=62.92 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=27.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
|.++.|.||+||||||+.+.++.-.+ .|.+.++.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 67899999999999999999987553 35566654
No 258
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.76 E-value=1.9e-05 Score=58.41 Aligned_cols=30 Identities=27% Similarity=0.136 Sum_probs=25.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
.+++|+|++||||||+.+.|+.. |...++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 57999999999999999999985 5555553
No 259
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.75 E-value=1.8e-05 Score=58.05 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
++.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999997643
No 260
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.75 E-value=1.7e-05 Score=58.09 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.++.|+|++||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998654
No 261
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.74 E-value=1.7e-05 Score=65.29 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=30.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
.-++|+|++||||||+++.+++...+..+.|.+.+
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 45789999999999999999998877788887754
No 262
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.73 E-value=1.4e-05 Score=58.24 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998764
No 263
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.73 E-value=2.1e-05 Score=58.33 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 37799999999999999999999876
No 264
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.72 E-value=2.1e-05 Score=58.48 Aligned_cols=27 Identities=33% Similarity=0.308 Sum_probs=24.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCcc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
|.+++|.|+.||||||+.+.|+..+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 779999999999999999999986654
No 265
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.71 E-value=1.8e-05 Score=57.81 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.++.|.|++||||||+.+.++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999998543
No 266
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.69 E-value=2.1e-05 Score=57.88 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
|.+++|.|++||||||+.+.|+..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999998644
No 267
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00033 Score=58.21 Aligned_cols=115 Identities=10% Similarity=0.133 Sum_probs=63.2
Q ss_pred EEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHHHHHH
Q 030549 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDN 84 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 84 (175)
+-|.||+|+|||+|.|++++..... -+.+.+-+. + .... .+..+.
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~~~~--f~~v~~s~l----------------~-----------sk~v------Gese~~ 229 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHTDCK--FIRVSGAEL----------------V-----------QKYI------GEGSRM 229 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHTCE--EEEEEGGGG----------------S-----------CSST------THHHHH
T ss_pred eEEeCCCCCCHHHHHHHHHHhhCCC--ceEEEhHHh----------------h-----------cccc------chHHHH
Confidence 6789999999999999999975431 122222111 0 0000 122344
Q ss_pred HHHHHHHHhhccCCCCEEEEeCC-----Ccccccc-----cchHHHHHHHHHHh--CCCcEEEEEeeeccchhhhhc---
Q 030549 85 LDDWLAEELDNYLDDDYLVFDCP-----GQIELFT-----HVPVLRNFVDHLKS--RNFNVCAVYLLDSQVCIRFRT--- 149 (175)
Q Consensus 85 ~~~~l~~~l~~~~~p~lliLDEP-----~~~~~~~-----~~~~~~~~l~~l~~--~g~tvli~~l~~sH~~~~~~~--- 149 (175)
.+..+..+-.. .|-++++||- .+..-.. ....+.++|.++.. ....| +++.+|++.+.+..
T Consensus 230 vr~lF~~Ar~~--aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V--~vIaATNrpd~LDpAll 305 (405)
T 4b4t_J 230 VRELFVMAREH--APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNI--KIIMATNRLDILDPALL 305 (405)
T ss_dssp HHHHHHHHHHT--CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCE--EEEEEESCSSSSCHHHH
T ss_pred HHHHHHHHHHh--CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCe--EEEeccCChhhCCHhHc
Confidence 55566666667 8999999998 1111111 11234556666632 22223 22778887766432
Q ss_pred ---CCCceeEec
Q 030549 150 ---LPPCIVCFC 158 (175)
Q Consensus 150 ---~~~~~~~~~ 158 (175)
..|+.+.+.
T Consensus 306 RpGRfD~~I~i~ 317 (405)
T 4b4t_J 306 RPGRIDRKIEFP 317 (405)
T ss_dssp STTSSCCEEECC
T ss_pred CCCcCceEEEcC
Confidence 455555554
No 268
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.66 E-value=2.4e-05 Score=58.34 Aligned_cols=25 Identities=32% Similarity=0.204 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
|-+++|.|+.||||||+.+.|+..+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 7799999999999999999998654
No 269
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.66 E-value=2.3e-05 Score=58.58 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030549 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
++|+||+|||||||++.|....+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999976543
No 270
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.66 E-value=2.2e-05 Score=57.50 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
|+-+++|+|++||||||+.+.|+..+
T Consensus 1 M~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 1 MAPKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp -CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46689999999999999999997643
No 271
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.64 E-value=3.3e-05 Score=56.85 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=23.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCETV 29 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~ 29 (175)
+++|+|++|||||||+..|+..++..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 78999999999999999999887653
No 272
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.62 E-value=3.3e-05 Score=57.40 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHccC
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.+++|.|++||||||+.+.|++.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999999998854
No 273
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.61 E-value=2.4e-05 Score=57.74 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+-+++|.|+.||||||+.+.|+..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998754
No 274
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.60 E-value=2.8e-05 Score=60.82 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.++|+|++|||||||++.++|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999754
No 275
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.60 E-value=3.6e-05 Score=56.29 Aligned_cols=25 Identities=36% Similarity=0.646 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.+++|.|+.||||||+.+.++..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999997643
No 276
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.60 E-value=2.6e-05 Score=63.84 Aligned_cols=29 Identities=34% Similarity=0.465 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHccCcccccee
Q 030549 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTM 33 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~~~~G~I 33 (175)
++|+|++|+|||||++.|.|...+..+.+
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~~~~~~~~ 68 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTDLYPERVI 68 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCCC------
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 78999999999999999988765544443
No 277
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.59 E-value=3.5e-05 Score=57.51 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
|-+++|.|+.||||||+.+.|+..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 7789999999999999999998654
No 278
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.59 E-value=2.8e-05 Score=68.60 Aligned_cols=35 Identities=26% Similarity=0.276 Sum_probs=29.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCcc--ccceeEEee
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVN 37 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~--~~G~I~i~g 37 (175)
|..++|+|+||||||||++.+++...+ ..|+| .+|
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g 45 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEG 45 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGT
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCC
Confidence 678999999999999999999987664 67877 344
No 279
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.58 E-value=2.5e-05 Score=56.93 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=18.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+.++.|.|++||||||+.+.|+..+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999986543
No 280
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.58 E-value=3.9e-05 Score=56.47 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~g 24 (175)
.++++|++|+|||||++.+++
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999999997
No 281
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.58 E-value=3.9e-05 Score=55.36 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
..+++|.|+.||||||+.+.|+..+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998754
No 282
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.58 E-value=3.5e-05 Score=56.39 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988654
No 283
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.57 E-value=3.5e-05 Score=57.16 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~g 24 (175)
.++++|++|||||||++.+++
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999987
No 284
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.57 E-value=3.4e-05 Score=59.56 Aligned_cols=23 Identities=26% Similarity=0.627 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030549 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+.|.||+|+|||||++++++...
T Consensus 48 vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999764
No 285
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.57 E-value=4.5e-05 Score=60.18 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=28.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEe
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~ 36 (175)
..+.|.||+|+||||+++++++...+.++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence 4789999999999999999999988777765443
No 286
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.56 E-value=3.4e-05 Score=63.24 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHH
Q 030549 3 YAQLVIGPAGSGKSTYCSSLY 23 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~ 23 (175)
.+.+|+|+|||||||++.+|.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999986
No 287
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.54 E-value=4.7e-05 Score=56.05 Aligned_cols=24 Identities=38% Similarity=0.243 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+++|.|+.||||||+++.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988763
No 288
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.54 E-value=3.8e-05 Score=62.89 Aligned_cols=26 Identities=35% Similarity=0.606 Sum_probs=23.2
Q ss_pred CeE--EEEECCCCCcHHHHHHHHHccCc
Q 030549 2 GYA--QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei--~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
|++ ++|+|++||||||+.++|++.+.
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 666 99999999999999999998754
No 289
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.53 E-value=0.00045 Score=55.48 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-+.|.||.|+|||||+++++...
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHT
T ss_pred eEEEECCCCccHHHHHHHHHHHc
Confidence 47899999999999999999876
No 290
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.52 E-value=5.7e-05 Score=56.15 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+-+++|.|+.||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998644
No 291
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00049 Score=58.16 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030549 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+.|.||+|+|||+|.+++++...
T Consensus 246 ILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 246 ILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp EEECSCTTSSHHHHHHHHHHHHT
T ss_pred eEeeCCCCCcHHHHHHHHHhccC
Confidence 67899999999999999998754
No 292
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00043 Score=58.15 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030549 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+.|.||+|+|||+|.+++++...
T Consensus 218 vLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 67899999999999999998754
No 293
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.51 E-value=6.2e-05 Score=56.81 Aligned_cols=25 Identities=32% Similarity=0.576 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
|-+++|+|+.||||||+.+.|+..+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 6689999999999999999998754
No 294
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.50 E-value=0.00057 Score=55.57 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHccC
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.-+.|.||+|+|||||+++++...
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999865
No 295
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.49 E-value=5.5e-05 Score=57.43 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.+++|.|+.||||||+.+.|+..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998644
No 296
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.49 E-value=6.1e-05 Score=56.52 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999996543
No 297
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.48 E-value=6.2e-05 Score=55.12 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+++|.|+.||||||+.+.++..++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987653
No 298
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00075 Score=56.53 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030549 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+.|.||+|+|||+|.+++++...
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998754
No 299
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.48 E-value=6.8e-05 Score=54.08 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHccC
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
++++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999997643
No 300
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.47 E-value=8.2e-05 Score=59.11 Aligned_cols=26 Identities=27% Similarity=0.617 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+..+.|.||+|+|||||++++++...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhC
Confidence 45689999999999999999999764
No 301
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.47 E-value=7.8e-05 Score=55.36 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
..+++|.|+.||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998654
No 302
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.46 E-value=5.7e-05 Score=57.11 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.++.|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998654
No 303
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.45 E-value=7.2e-05 Score=56.16 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997654
No 304
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.44 E-value=8.6e-05 Score=57.81 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998764
No 305
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.44 E-value=8.2e-05 Score=53.43 Aligned_cols=23 Identities=43% Similarity=0.323 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+++|.|+.||||||+.+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998743
No 306
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.43 E-value=7e-05 Score=54.74 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.++++|+.|||||||++.+++-..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998653
No 307
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.43 E-value=0.0013 Score=55.08 Aligned_cols=28 Identities=11% Similarity=0.303 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+|+++.|.|++|+|||||+..++.....
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999988876543
No 308
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.43 E-value=7.9e-05 Score=58.67 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 309
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.42 E-value=0.0006 Score=57.35 Aligned_cols=25 Identities=28% Similarity=0.589 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccCcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
.+.|.||+|+|||||.++|+.....
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3789999999999999999998754
No 310
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.42 E-value=9.8e-05 Score=56.39 Aligned_cols=25 Identities=36% Similarity=0.612 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
..++.|+||+||||||..+.|+..+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998654
No 311
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.00077 Score=56.49 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=21.0
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030549 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+-|.||+|+|||+|.+++++...
T Consensus 219 vLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp EEEESSTTTTHHHHHHHHHHHHT
T ss_pred CceECCCCchHHHHHHHHHHHhC
Confidence 77999999999999999998754
No 312
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.40 E-value=5.1e-05 Score=68.29 Aligned_cols=26 Identities=27% Similarity=0.617 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
|..+.|.||||+|||||.+++++...
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred CceeEEECCCCCCHHHHHHHHHHHhC
Confidence 55688999999999999999999874
No 313
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.40 E-value=8.3e-05 Score=52.69 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|||||||++.+++-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
No 314
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.38 E-value=0.00013 Score=53.33 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++|+|++|+|||||++.+++-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999766553
No 315
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.38 E-value=9.4e-05 Score=57.17 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+++|.|+.||||||+.+.|+..+.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 799999999999999999988543
No 316
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.38 E-value=9.9e-05 Score=52.73 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37999999999999999998864
No 317
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.37 E-value=0.0001 Score=52.35 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|||||||++.+++-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 318
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.37 E-value=0.0001 Score=55.10 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcc
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl 25 (175)
.+++|+|+.||||||+.+.++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999875
No 319
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.37 E-value=9.8e-05 Score=52.04 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+++-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
No 320
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.36 E-value=0.00012 Score=56.39 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+-+++|.|+.||||||+.+.|+..+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999997543
No 321
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.36 E-value=0.0001 Score=52.05 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|||||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 322
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.36 E-value=7.5e-05 Score=53.02 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
-++++|+.|+|||||++.++|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 378999999999999999987543
No 323
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.36 E-value=0.00011 Score=56.06 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~g 24 (175)
|+.+++.||+||||||++..+..
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHh
Confidence 78999999999999998887754
No 324
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.35 E-value=7.5e-05 Score=54.43 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++++|++|+|||||++.+++-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999886
No 325
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.35 E-value=0.00011 Score=55.75 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997644
No 326
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.35 E-value=0.0001 Score=52.05 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|||||||++.+++-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
No 327
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.35 E-value=7e-05 Score=62.17 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+|+.++|+||+|+|||||++.|++.+.
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 599999999999999999999998764
No 328
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.35 E-value=0.00011 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998754
No 329
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.34 E-value=9e-05 Score=52.14 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|||||||++.+++-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998753
No 330
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.34 E-value=0.00011 Score=52.21 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998864
No 331
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.34 E-value=0.00013 Score=57.48 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~g 24 (175)
..++.|.|++||||||+.+.|+.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999986
No 332
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.34 E-value=9.8e-05 Score=52.99 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|||||||++.+++-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998753
No 333
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.34 E-value=0.00042 Score=66.64 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=28.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
+|+++.|.||+|+|||||+..++.......+.+.+
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~Vly 765 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAF 765 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEE
Confidence 48999999999999999999998876655555544
No 334
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.33 E-value=9.6e-05 Score=60.18 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHccC
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-.++++|+||+|||||++.++|..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999875
No 335
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.33 E-value=0.00011 Score=52.01 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 336
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.33 E-value=0.00012 Score=52.13 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
No 337
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.0007 Score=56.79 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030549 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+-|.||+|+|||+|.+++++...
T Consensus 218 vLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 218 ALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEECcCCCCHHHHHHHHHHHhC
Confidence 67899999999999999999754
No 338
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.32 E-value=0.00012 Score=51.86 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 339
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.32 E-value=0.00012 Score=52.49 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|||||||++.+++-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998653
No 340
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.31 E-value=0.00012 Score=52.54 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|||||||++.+++-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998754
No 341
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.31 E-value=0.00012 Score=56.57 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.++|+|++|+|||||++.|+|--.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 489999999999999999998654
No 342
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.31 E-value=0.00015 Score=52.03 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcc
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl 25 (175)
-.++++|+.|||||||++.+++-
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
No 343
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.30 E-value=0.00011 Score=52.17 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
No 344
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.29 E-value=0.00015 Score=52.74 Aligned_cols=25 Identities=28% Similarity=0.378 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccCcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
-++++|+.|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 3799999999999999999987653
No 345
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.28 E-value=0.00011 Score=53.69 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+++-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
No 346
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.28 E-value=7.5e-05 Score=53.95 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~g 24 (175)
.++++|++|||||||++.+++
T Consensus 20 ~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999974
No 347
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.27 E-value=0.00016 Score=54.75 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
++.|+||+||||+|..+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998754
No 348
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.27 E-value=0.00013 Score=57.58 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~g 24 (175)
-+++|.|+.||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 349
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.27 E-value=0.00012 Score=52.44 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++++|+.|+|||||++.+++-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999876
No 350
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.27 E-value=0.00012 Score=53.31 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 48999999999999999998864
No 351
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.27 E-value=0.00014 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
No 352
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.27 E-value=0.00014 Score=52.92 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999863
No 353
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.26 E-value=7.5e-05 Score=59.34 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=19.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+-++||.|++||||||+.+.++..+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45899999999999999999987554
No 354
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.26 E-value=0.00015 Score=51.41 Aligned_cols=22 Identities=18% Similarity=0.372 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 355
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.26 E-value=0.00014 Score=54.90 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
|-.++|+|+.||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999998754
No 356
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.26 E-value=0.00015 Score=57.80 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++|+|++|+|||||++.++|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 357
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.26 E-value=0.00012 Score=53.05 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999998854
No 358
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.26 E-value=0.00017 Score=51.75 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
No 359
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.25 E-value=0.00015 Score=53.00 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++|+|+.|+|||||++.+++-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998843
No 360
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.24 E-value=0.00015 Score=54.50 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997643
No 361
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.24 E-value=0.00016 Score=51.42 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++++|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999763
No 362
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.24 E-value=0.00016 Score=52.42 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++|+|+.|+|||||++.+++-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 363
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.23 E-value=0.00017 Score=57.52 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+++++|+.|||||||++.+.|--
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999853
No 364
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.23 E-value=0.00015 Score=59.66 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++|+|++|+|||||++.+++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999999985
No 365
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.22 E-value=0.00017 Score=50.96 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 030549 5 QLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl 25 (175)
++++|+.|+|||||++.+++-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999763
No 366
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.22 E-value=0.00015 Score=54.35 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+-+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998754
No 367
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.22 E-value=0.00016 Score=56.30 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|++|||||||++.++|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999974
No 368
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.21 E-value=0.00017 Score=52.46 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|||||||++.+++-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 369
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.21 E-value=0.00022 Score=54.37 Aligned_cols=25 Identities=32% Similarity=0.670 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+..+.|+|+.||||||+.+.|+..+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998654
No 370
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.21 E-value=0.00018 Score=51.47 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 371
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.21 E-value=0.00018 Score=51.82 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|||||||++.+++-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 47999999999999999998743
No 372
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.20 E-value=0.00019 Score=51.57 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 373
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.19 E-value=0.00016 Score=51.67 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 374
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.19 E-value=0.00023 Score=57.56 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
..+++|+||+|||||||.+.|+..+.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999998654
No 375
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.19 E-value=0.00024 Score=53.56 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
||.++++=|+-||||||+++.|+..+.
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 789999999999999999999998764
No 376
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.18 E-value=0.0025 Score=62.23 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=27.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEe
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~ 36 (175)
+|+++.|.||+|+|||||...++.-.....+.+.+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi 1461 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI 1461 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 478999999999999999998876544434445443
No 377
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.18 E-value=0.00015 Score=61.44 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=29.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
+|+..+|+|++|+|||||++.|+.-.....+.+.+
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 58999999999999999999998876655566655
No 378
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.17 E-value=0.0002 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+++-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999865
No 379
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.17 E-value=0.00021 Score=51.32 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 380
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.17 E-value=0.0013 Score=53.13 Aligned_cols=25 Identities=24% Similarity=0.285 Sum_probs=19.1
Q ss_pred CeEEEEECCCCCcHHHHHH-HHHccCc
Q 030549 2 GYAQLVIGPAGSGKSTYCS-SLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk-~i~gl~~ 27 (175)
| ++-|.||+|+|||||+- +++...+
T Consensus 29 G-iteI~G~pGsGKTtL~Lq~~~~~~~ 54 (333)
T 3io5_A 29 G-LLILAGPSKSFKSNFGLTMVSSYMR 54 (333)
T ss_dssp E-EEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred C-eEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6 78999999999999954 4444443
No 381
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.16 E-value=0.00016 Score=53.40 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++++|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4799999999999999999764
No 382
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.15 E-value=0.00022 Score=52.53 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+++-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 383
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.15 E-value=0.00022 Score=55.51 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|+|++|||||||++.++|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999854
No 384
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.15 E-value=0.00022 Score=52.44 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|||||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 385
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.15 E-value=0.00021 Score=53.53 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+++++|+.|||||||++.+++-.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 386
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.15 E-value=0.00019 Score=51.88 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 387
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.15 E-value=0.00022 Score=58.03 Aligned_cols=25 Identities=20% Similarity=0.537 Sum_probs=22.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCc
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.+++|.||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999998764
No 388
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.15 E-value=0.00013 Score=61.25 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=32.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~ 41 (175)
.+++++|++|+||||++..|++.+.....++.+-.-|+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 489999999999999999999988765566777665543
No 389
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.14 E-value=0.00023 Score=51.93 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 390
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.14 E-value=0.00022 Score=51.69 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+++-.
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
No 391
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.14 E-value=0.00023 Score=51.35 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 392
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.13 E-value=0.00037 Score=52.90 Aligned_cols=28 Identities=32% Similarity=0.394 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+|-++++.|+.||||||+++.|+..+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3889999999999999999999887654
No 393
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.13 E-value=0.00023 Score=51.87 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+++-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 394
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.13 E-value=0.00033 Score=56.97 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+.+++|+||.|||||||...|+..+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 56899999999999999999998763
No 395
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.13 E-value=0.00023 Score=54.93 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|+|+.|||||||++.++|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 396
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.12 E-value=0.00021 Score=51.98 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 397
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.12 E-value=0.00018 Score=56.26 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|+|++|+|||||++.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987753
No 398
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.12 E-value=0.00021 Score=52.22 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|||||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999874
No 399
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.12 E-value=0.00021 Score=56.03 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|..|||||||++.++|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 400
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.12 E-value=0.0003 Score=57.25 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=29.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~ 41 (175)
-+++|+|+.|+|||||++.+++.+....-++.+-..++.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~ 118 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPS 118 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 479999999999999999999876544445665555543
No 401
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.12 E-value=0.00023 Score=54.73 Aligned_cols=28 Identities=21% Similarity=0.180 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+|-++.+.|+.||||||+++.|+..++.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3789999999999999999999887653
No 402
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.12 E-value=0.00026 Score=54.65 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=24.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+|.++++.|++||||||+++.|+..+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3789999999999999999999887654
No 403
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.12 E-value=0.00025 Score=51.07 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999853
No 404
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.11 E-value=0.00027 Score=58.88 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
..++.|+|++||||||+.+.++...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999987643
No 405
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.11 E-value=0.00022 Score=52.23 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 406
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.09 E-value=0.00028 Score=51.92 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 407
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.09 E-value=0.00034 Score=56.39 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
++.+++|.||+|||||||...|+.-++
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 356899999999999999999987653
No 408
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.09 E-value=0.00028 Score=51.41 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 409
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.09 E-value=0.00037 Score=50.13 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCc
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
..+.|.||.|+|||||++.++..+.
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999988754
No 410
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.08 E-value=0.00028 Score=51.98 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++|+|++|+|||||++.++|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 411
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.07 E-value=0.00025 Score=52.39 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+++-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 47999999999999999998854
No 412
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.07 E-value=0.00026 Score=51.91 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
No 413
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.07 E-value=0.0003 Score=51.45 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 414
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.07 E-value=0.00033 Score=53.25 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=25.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+|-++.+-|+.||||||+++.|+..++.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4889999999999999999999887754
No 415
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.07 E-value=0.00026 Score=51.04 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~g 24 (175)
.++++|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 479999999999999999984
No 416
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.06 E-value=0.00032 Score=54.89 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G 31 (175)
.++++|.+|+|||||++.++|-.....|
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~~~~~~ 128 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKRASSVG 128 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred heEEeCCCCCCHHHHHHHHhcccccccC
Confidence 6899999999999999999987654433
No 417
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.06 E-value=0.00031 Score=50.50 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 418
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.06 E-value=0.00031 Score=51.44 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 419
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.05 E-value=0.00031 Score=51.28 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++++|+.|+|||||++.+++-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 420
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.05 E-value=0.0026 Score=57.20 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030549 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+.|.||+|+|||||.|++++...
T Consensus 241 ILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 241 ILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp EEEECCTTSCHHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999998764
No 421
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.05 E-value=0.00022 Score=52.07 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+++-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998765
No 422
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.05 E-value=0.00029 Score=55.79 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|+|+.|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 423
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.05 E-value=0.00027 Score=51.69 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++|+|+.|+|||||++.+++-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 37999999999999999998754
No 424
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.05 E-value=0.00031 Score=51.04 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+++-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 425
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.05 E-value=0.00029 Score=52.12 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 426
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.05 E-value=0.00032 Score=51.46 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999875
No 427
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.05 E-value=0.00029 Score=51.24 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++++|+.|+|||||++.+++-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999853
No 428
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.04 E-value=0.00036 Score=53.36 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+|-+++|-|+.||||||+++.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 477899999999999999999987764
No 429
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.04 E-value=0.00027 Score=52.63 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|++|+|||||++.+++-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999998764
No 430
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.04 E-value=0.00033 Score=51.63 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 431
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.03 E-value=0.00033 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998643
No 432
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.03 E-value=0.00031 Score=51.29 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|+|+.|+|||||++.+++-.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 433
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.03 E-value=0.00037 Score=53.09 Aligned_cols=28 Identities=32% Similarity=0.557 Sum_probs=25.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+|.++.+-|+.||||||+++.|+..+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3889999999999999999999987765
No 434
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.02 E-value=0.00032 Score=52.98 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+++-.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998853
No 435
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.02 E-value=0.00029 Score=52.03 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 436
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.02 E-value=0.00036 Score=53.63 Aligned_cols=38 Identities=11% Similarity=0.030 Sum_probs=26.1
Q ss_pred Ce-EEEEECCCCCcHHHHHHHHHccCccccc-eeEEeecCc
Q 030549 2 GY-AQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDP 40 (175)
Q Consensus 2 Ge-i~~liG~NGsGKSTLlk~i~gl~~~~~G-~I~i~g~~~ 40 (175)
|. .+.+.|+.|+||||++-.++....- .| .+.+...++
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~-~G~~V~v~d~D~ 44 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLR-QGVRVMAGVVET 44 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH-CCCCEEEEEeCC
Confidence 44 3788999999999996666655432 45 465555554
No 437
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.01 E-value=0.00014 Score=54.40 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|||||||++.++|-.
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 438
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.01 E-value=0.00038 Score=51.81 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++|+|+.|+|||||++.+++-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 439
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.00 E-value=0.00039 Score=51.13 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
-++++|+.|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 479999999999999999998644
No 440
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.00 E-value=0.00028 Score=51.11 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++++|+.|+|||||++.+++-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 441
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.00 E-value=0.0025 Score=54.14 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-+.|.||+|+|||+++++++...
T Consensus 240 ~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred cEEEECcCCCCHHHHHHHHHHHh
Confidence 37899999999999999998765
No 442
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.99 E-value=0.0004 Score=50.99 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 443
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.99 E-value=0.00027 Score=50.80 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999874
No 444
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.98 E-value=0.00047 Score=52.08 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl 25 (175)
|..+.|+||+|||||||...++.-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 677999999999999999998764
No 445
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.98 E-value=0.00042 Score=51.59 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccCcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
.+.|.||+|+|||||++.++.....
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 7899999999999999999876543
No 446
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.97 E-value=0.00041 Score=50.68 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999988764
No 447
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.97 E-value=0.00036 Score=51.80 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 448
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.96 E-value=0.00038 Score=52.05 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 449
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.96 E-value=0.00036 Score=52.07 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998853
No 450
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.95 E-value=0.0022 Score=61.77 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=26.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
+|+++.|.||+|+|||||+-.++.......+.+.+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vly 416 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAF 416 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEE
Confidence 48899999999999999988876654433344443
No 451
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.95 E-value=0.00055 Score=55.05 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
..+++|.||+|||||||...++....
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 35789999999999999999987653
No 452
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.95 E-value=0.00043 Score=51.41 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+++-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 453
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.94 E-value=0.00026 Score=51.12 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999865
No 454
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.93 E-value=0.00041 Score=53.81 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
|-+++|.|+.||||||+++.|+..++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999988763
No 455
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.93 E-value=0.00036 Score=54.69 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|..|||||||++.++|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999865
No 456
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.93 E-value=0.00061 Score=52.17 Aligned_cols=28 Identities=25% Similarity=0.116 Sum_probs=24.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+|-++++.|+.||||||+.+.++..+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3778999999999999999999887654
No 457
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.92 E-value=0.00041 Score=51.22 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998743
No 458
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.91 E-value=0.00089 Score=47.23 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=22.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccCcccc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCETVR 30 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~ 30 (175)
-+.|.||+|+|||++.++|........
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~ 52 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQ 52 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccC
Confidence 478999999999999999988765433
No 459
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.91 E-value=0.00038 Score=51.15 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++++|+.|+|||||++.+++-
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999753
No 460
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.90 E-value=0.00047 Score=51.73 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|+|..|+|||||++.++.-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 461
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.89 E-value=0.00043 Score=58.12 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++|+|++|+|||||++.++|-
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999884
No 462
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.89 E-value=0.00051 Score=53.34 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.++|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999854
No 463
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.88 E-value=0.00024 Score=52.94 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|||||||++.+++-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
No 464
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.88 E-value=0.00053 Score=50.72 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=20.3
Q ss_pred CCeEEEEECCCCCcHHHHH-HHHHcc
Q 030549 1 MGYAQLVIGPAGSGKSTYC-SSLYRH 25 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLl-k~i~gl 25 (175)
+|.++.+.||.||||||++ +.+...
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4889999999999999997 544433
No 465
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.88 E-value=0.00048 Score=50.30 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999865
No 466
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.88 E-value=0.0092 Score=45.92 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=25.8
Q ss_pred CCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccc
Q 030549 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQV 143 (175)
Q Consensus 98 ~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~ 143 (175)
+.+++++||- .++. + +.++++.+.+.|..| ++..++
T Consensus 90 ~~dvViIDEa---QF~~--~-v~el~~~l~~~gi~V----I~~GL~ 125 (234)
T 2orv_A 90 GVAVIGIDEG---QFFP--D-IVEFCEAMANAGKTV----IVAALD 125 (234)
T ss_dssp TCSEEEESSG---GGCT--T-HHHHHHHHHHTTCEE----EEECCS
T ss_pred cCCEEEEEch---hhhh--h-HHHHHHHHHhCCCEE----EEEecc
Confidence 7899999998 1111 1 445777777789999 777766
No 467
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.003 Score=50.83 Aligned_cols=26 Identities=8% Similarity=-0.024 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
|..+.|.||.|+|||++++.++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 56788999999999999999998764
No 468
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.87 E-value=0.0005 Score=49.44 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCcc
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
..+.|.||.|+|||||++.++.....
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999887643
No 469
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.86 E-value=0.0015 Score=49.74 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
+|.+..+.|+-||||||.+--++--+.-..-++.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli 61 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIV 61 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence 38899999999999998765554433332333444
No 470
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.86 E-value=0.00053 Score=53.40 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.++|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 471
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.86 E-value=0.0033 Score=61.43 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=26.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
+|+++.|.||+|+|||||+..++.......+.+.+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vly 416 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAF 416 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 48899999999999999998887655443344433
No 472
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.86 E-value=0.0006 Score=52.52 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.+||+|+.||||||+.+.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999997644
No 473
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.85 E-value=0.00063 Score=51.34 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++|+|++|+|||||++.++|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 474
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.83 E-value=0.00056 Score=54.63 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.3
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030549 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+.|.||+|+||||+++++++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999864
No 475
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.83 E-value=0.00071 Score=54.45 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=25.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc----cCccccceeEE
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYR----HCETVRRTMHI 35 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~g----l~~~~~G~I~i 35 (175)
|.-+.|.|++|+||||+...+.+ ++..+...|..
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~ 181 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIRE 181 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEE
Confidence 67799999999999999999987 44444444443
No 476
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.81 E-value=0.00058 Score=50.53 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47999999999999999998653
No 477
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.00069 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++|+|+.|+|||||++.+++-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998753
No 478
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.78 E-value=0.0004 Score=50.52 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~g 24 (175)
-++++|+.|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999965
No 479
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.77 E-value=0.00026 Score=51.99 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=4.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999876
No 480
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.77 E-value=0.00063 Score=50.45 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~g 24 (175)
.++++|+.|+|||||++.+++
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 489999999999999988875
No 481
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.75 E-value=0.00077 Score=50.44 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 482
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.70 E-value=0.00076 Score=49.96 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
No 483
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.68 E-value=0.001 Score=49.17 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~g 24 (175)
|.-+.|.|++|+|||||...+..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 66789999999999999887754
No 484
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.68 E-value=0.01 Score=50.31 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+|+++.|.|++|+|||||+--++--.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHH
Confidence 48999999999999999987776543
No 485
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.65 E-value=0.00042 Score=53.56 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030549 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.|.||+|+|||||++++++..
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 5689999999999999999854
No 486
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.64 E-value=0.0011 Score=48.78 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.+.|.||.|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998765
No 487
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.63 E-value=0.0011 Score=52.88 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~g 24 (175)
+|+++.|.|++|||||||+..++.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999998875
No 488
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.62 E-value=0.0013 Score=53.01 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=27.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
|..+.|.||+|+|||||++.++.........+.+.+
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 357899999999999999999988764333444443
No 489
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.61 E-value=0.00094 Score=55.32 Aligned_cols=23 Identities=30% Similarity=0.255 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|+|.+++|||||++.++|--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999999863
No 490
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.56 E-value=0.0054 Score=51.45 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+|+.+.|.|++|+|||||+-.++.-.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 48999999999999999987776543
No 491
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.56 E-value=0.0011 Score=55.38 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++|+|++|+|||||++.++|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 492
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.55 E-value=0.0017 Score=51.30 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.++++|.+|+|||||++.+.|-..
T Consensus 122 ~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 122 RALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred eEEEEecCCCchHHHHHHHhcCce
Confidence 589999999999999999998754
No 493
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.55 E-value=0.0056 Score=54.48 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.+.+.||+|+|||++.++++....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 488999999999999999998863
No 494
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.54 E-value=0.0015 Score=57.25 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030549 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
|.++.|.|.+||||||+.+.|+..+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 6689999999999999999998865
No 495
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.52 E-value=0.0018 Score=49.04 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=20.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH
Q 030549 1 MGYAQLVIGPAGSGKSTYCSSLY 23 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~ 23 (175)
+|+++.|.|++|+|||||+--++
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Confidence 48999999999999999987654
No 496
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.50 E-value=0.0013 Score=54.67 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHccC
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.+++|.||+|||||||.+.|+..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998654
No 497
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.49 E-value=0.0019 Score=51.38 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcc
Q 030549 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl 25 (175)
--++|+|+.|+|||||++.+.+-
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999998775
No 498
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.47 E-value=0.0014 Score=51.79 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.+.|.||+|+|||+|.++|+...
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46677999999999999999865
No 499
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.46 E-value=0.00096 Score=49.86 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHH-HHcc
Q 030549 4 AQLVIGPAGSGKSTYCSS-LYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~-i~gl 25 (175)
.++++|+.|+|||||++. +.|-
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 489999999999999998 5554
No 500
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.46 E-value=0.0016 Score=50.54 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030549 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-+.|.||+|+|||||+++++...
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 47889999999999999998863
Done!