BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030550
         (175 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YDU|A Chain A, Solution Nmr Structure Of At5g01610, An Arabidopsis
           Thaliana Protein Containing Duf538 Domain
          Length = 170

 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 33  EILPKFGLPQGLLPSNVVSYTLQDD-GLFTVELSSECYVEFD--YLVYYEKTVTGKISIG 89
           E+L ++ LP G+ P +  +Y   ++    TV + S C V +    ++ +  TVTG +  G
Sbjct: 56  ELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKG 115

Query: 90  SISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGI 127
            +++++GI+ K  + W  V  I  D   +  +YF  G+
Sbjct: 116 KLTDVEGIKTK-VMIWVKVTSISTD---ASKVYFTAGM 149


>pdb|3FXA|A Chain A, Crystal Structure Of A Putative Sugar-Phosphate Isomerase
           (Lmof2365_0531) From Listeria Monocytogenes Str. 4b
           F2365 At 1.60 A Resolution
 pdb|3FXA|B Chain B, Crystal Structure Of A Putative Sugar-Phosphate Isomerase
           (Lmof2365_0531) From Listeria Monocytogenes Str. 4b
           F2365 At 1.60 A Resolution
 pdb|3FXA|C Chain C, Crystal Structure Of A Putative Sugar-Phosphate Isomerase
           (Lmof2365_0531) From Listeria Monocytogenes Str. 4b
           F2365 At 1.60 A Resolution
 pdb|3FXA|D Chain D, Crystal Structure Of A Putative Sugar-Phosphate Isomerase
           (Lmof2365_0531) From Listeria Monocytogenes Str. 4b
           F2365 At 1.60 A Resolution
          Length = 201

 Score = 27.7 bits (60), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 83  TGKISIGSISNLKGIQVKRFLFWFD-VDEIRVDLPPSDSIYFQVGIINKK 131
           TGKI +       G+  K+ +  F+ ++   V L PSD+++  +G++ K+
Sbjct: 45  TGKIVVAGCGT-SGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKE 93


>pdb|4I83|A Chain A, Crystal Structure Of (3r)-hydroxymyristoyl-acp Dehydratase
           From Neisseria Meningitidis Fam18
 pdb|4I83|C Chain C, Crystal Structure Of (3r)-hydroxymyristoyl-acp Dehydratase
           From Neisseria Meningitidis Fam18
 pdb|4I83|B Chain B, Crystal Structure Of (3r)-hydroxymyristoyl-acp Dehydratase
           From Neisseria Meningitidis Fam18
 pdb|4I83|D Chain D, Crystal Structure Of (3r)-hydroxymyristoyl-acp Dehydratase
           From Neisseria Meningitidis Fam18
 pdb|4I83|E Chain E, Crystal Structure Of (3r)-hydroxymyristoyl-acp Dehydratase
           From Neisseria Meningitidis Fam18
 pdb|4I83|F Chain F, Crystal Structure Of (3r)-hydroxymyristoyl-acp Dehydratase
           From Neisseria Meningitidis Fam18
          Length = 152

 Score = 27.3 bits (59), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 96  GIQVKRFLFWFDVDEIRV--DLPPSDSIYFQVGIINKKLDVGQFETV 140
           G +   F F+  +DE R    + P D + F+V ++  +  +G+F  V
Sbjct: 86  GRKENEFFFFAGIDEARFKRQVIPGDQLVFEVELLTSRRGIGKFNAV 132


>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
          Length = 558

 Score = 26.9 bits (58), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 3/42 (7%)

Query: 31  VYEILPKFGLPQGL--LPSNVVSYTLQDDGLFTVELSSECYV 70
           VYE++ KF L +G+     +V+++  +++GL TVE   E YV
Sbjct: 181 VYEMM-KFWLEKGIDGFRMDVINFISKEEGLPTVETEEEGYV 221


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.139    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,434,379
Number of Sequences: 62578
Number of extensions: 171595
Number of successful extensions: 345
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 5
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)