BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030550
         (175 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610 OS=Arabidopsis thaliana
           GN=At5g01610 PE=1 SV=1
          Length = 170

 Score = 42.4 bits (98), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 33  EILPKFGLPQGLLPSNVVSYTLQDD-GLFTVELSSECYVEFD--YLVYYEKTVTGKISIG 89
           E+L ++ LP G+ P +  +Y   ++    TV + S C V +    ++ +  TVTG +  G
Sbjct: 56  ELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKG 115

Query: 90  SISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGI 127
            +++++GI+ K  + W  V  I  D   +  +YF  G+
Sbjct: 116 KLTDVEGIKTK-VMIWVKVTSISTD---ASKVYFTAGM 149


>sp|A9KIA5|SYH_CLOPH Histidine--tRNA ligase OS=Clostridium phytofermentans (strain ATCC
           700394 / DSM 18823 / ISDg) GN=hisS PE=3 SV=1
          Length = 417

 Score = 31.2 bits (69), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 96  GIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSCRDNGL 148
           G+ ++R L++ + +E  V LPP  +I   VGI+  +     ++ V   R  G+
Sbjct: 302 GMGIERILYFLEKEE--VSLPPQPAIELYVGILGAEAKASAYQLVTKLRGEGI 352


>sp|P96740|PGDS_BACSU Gamma-DL-glutamyl hydrolase OS=Bacillus subtilis (strain 168)
           GN=pgdS PE=1 SV=2
          Length = 413

 Score = 30.4 bits (67), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 112 RVDLPPSDSIYFQVGIINKKLDVGQFETVHSCRDNGLS 149
           + DL P D ++FQ   +N  + +G  + VH    NG++
Sbjct: 355 KADLKPGDIVFFQSTSLNPSIYIGNGQVVHVTLSNGVT 392


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.140    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,258,327
Number of Sequences: 539616
Number of extensions: 2617209
Number of successful extensions: 5862
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5861
Number of HSP's gapped (non-prelim): 3
length of query: 175
length of database: 191,569,459
effective HSP length: 110
effective length of query: 65
effective length of database: 132,211,699
effective search space: 8593760435
effective search space used: 8593760435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)