Query 030550
Match_columns 175
No_of_seqs 111 out of 358
Neff 4.8
Searched_HMMs 29240
Date Tue Mar 26 01:15:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030550.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030550hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ydu_A AT5G01610; DUF538, stru 100.0 2.2E-42 7.6E-47 280.1 5.6 115 26-145 49-166 (170)
2 2nzc_A Hypothetical protein; s 33.1 14 0.00047 26.3 1.0 17 88-104 66-82 (86)
3 3p7j_A Heterochromatin protein 16.8 78 0.0027 22.4 2.3 26 36-62 18-43 (87)
4 2l32_A Small archaeal modifier 16.4 68 0.0023 21.4 1.8 17 27-43 19-35 (74)
5 4hwm_A Uncharacterized protein 15.4 18 0.0006 27.6 -1.5 16 149-164 50-65 (130)
6 3ghp_A Cellulosomal scaffoldin 14.9 69 0.0024 26.6 1.8 41 56-103 8-48 (227)
7 3tek_A Thermodbp-single strand 14.7 1.3E+02 0.0045 23.1 3.2 36 32-67 102-138 (148)
8 3qth_A Uncharacterized protein 14.1 61 0.0021 25.7 1.2 15 29-43 144-158 (176)
9 3fqm_A NS5A, non-structural pr 13.7 78 0.0027 25.3 1.7 18 78-96 29-46 (177)
10 2npb_A Selenoprotein W; struct 13.4 1.6E+02 0.0056 20.7 3.3 30 31-67 23-55 (96)
No 1
>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1
Probab=100.00 E-value=2.2e-42 Score=280.07 Aligned_cols=115 Identities=24% Similarity=0.547 Sum_probs=110.1
Q ss_pred CCCCcHHHhhhhcCCCCCCCCCCceeEEEec-CccEEEEEcCeeEEEEe--EEEEEccEEEEEEecCccccccceeEEEE
Q 030550 26 PSPPTVYEILPKFGLPQGLLPSNVVSYTLQD-DGLFTVELSSECYVEFD--YLVYYEKTVTGKISIGSISNLKGIQVKRF 102 (175)
Q Consensus 26 ~~~~ta~elL~~~GLP~GLLP~~V~~y~l~~-~G~f~v~l~~~C~~~f~--~~v~Y~~~ItG~i~~gkI~~L~GVkvK~l 102 (175)
.+++++||||++||||+||||++|++|++|+ +|.|||+|+++|+|+|+ |+|+|+++|||+|++|||++|+|||+|+|
T Consensus 49 ~~~~ta~elL~e~gLP~GLLP~~V~~Y~l~~~tG~f~V~l~~~C~~~f~~~~~v~Y~~~VtG~l~~GkI~~L~GVk~K~L 128 (170)
T 1ydu_A 49 KMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTKVM 128 (170)
T ss_dssp TTTSSCHHHHHHHSCTTCTTTSSSCEEEECTTTCSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEESS
T ss_pred cccccHHHHHHHcCCCCCcCCCCCeEEEEECCCcEEEEEeCCCEEEEecCccEEEEcCEEEEEEcCCcCccccCEEEEEE
Confidence 5788999999999999999999999999996 79999999999999995 89999999999999999999999999999
Q ss_pred EeeeeeeEEEecCCCCCcEEEEEceeeeeecccccccCCCCCC
Q 030550 103 LFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSCRD 145 (175)
Q Consensus 103 f~Wv~V~eI~vd~~~~~~I~F~vG~isksfP~s~F~~~p~C~~ 145 (175)
+|++|++|.|+ +++|+|++|+ +++||+++|+.+|+|..
T Consensus 129 -lWv~V~eI~v~---~~kI~F~vGi-~ksfp~saFe~~~~c~~ 166 (170)
T 1ydu_A 129 -IWVKVTSISTD---ASKVYFTAGM-KKSRSRDAYGVQRNGLR 166 (170)
T ss_dssp -SEESCCCBEEC---SSSEECTTSS-SSCCCHHHHSSCCCCCC
T ss_pred -EEeeEEEEEEe---CCEEEEEEcC-cccccHHHhcCCcCCcc
Confidence 99999999994 8999999995 99999999999999984
No 2
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=33.14 E-value=14 Score=26.35 Aligned_cols=17 Identities=24% Similarity=0.571 Sum_probs=14.5
Q ss_pred cCccccccceeEEEEEe
Q 030550 88 IGSISNLKGIQVKRFLF 104 (175)
Q Consensus 88 ~gkI~~L~GVkvK~lf~ 104 (175)
.||+.+|+||++|-...
T Consensus 66 ~gkLg~i~GV~vKt~~~ 82 (86)
T 2nzc_A 66 SGKLGQISGVRVKTVPL 82 (86)
T ss_dssp HHHHHTSTTEEEEEEEC
T ss_pred HHHhCCCCCEEEEEEEe
Confidence 47999999999998753
No 3
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}
Probab=16.81 E-value=78 Score=22.39 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=18.4
Q ss_pred hhcCCCCCCCCCCceeEEEecCccEEE
Q 030550 36 PKFGLPQGLLPSNVVSYTLQDDGLFTV 62 (175)
Q Consensus 36 ~~~GLP~GLLP~~V~~y~l~~~G~f~v 62 (175)
..+||.|||=|+.|.+.+ +.+|.+..
T Consensus 18 k~~GF~RGle~EkIlgat-~~~Gel~f 43 (87)
T 3p7j_A 18 GSTGFDRGLEAEKILGAS-DNNGRLTF 43 (87)
T ss_dssp --CTTTTTCCEEEEEEEE-EETTEEEE
T ss_pred CCCCccCCCCceEEeeEE-ccCCcEEE
Confidence 458999999999887775 45676543
No 4
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=16.44 E-value=68 Score=21.43 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=14.4
Q ss_pred CCCcHHHhhhhcCCCCC
Q 030550 27 SPPTVYEILPKFGLPQG 43 (175)
Q Consensus 27 ~~~ta~elL~~~GLP~G 43 (175)
+..|+.|+|+++|+|..
T Consensus 19 ~g~Tv~dLL~~Lgl~~~ 35 (74)
T 2l32_A 19 DDGTYADLVRAVDLSPH 35 (74)
T ss_dssp TTCSHHHHHHTTCCCSS
T ss_pred CCCcHHHHHHHcCCCcc
Confidence 45699999999999863
No 5
>4hwm_A Uncharacterized protein YEDD; YEDD-like protein, PF13987 family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 1.38A {Klebsiella pneumoniae subsp}
Probab=15.35 E-value=18 Score=27.64 Aligned_cols=16 Identities=31% Similarity=0.796 Sum_probs=13.2
Q ss_pred CCCCCCCccccccCCC
Q 030550 149 SESGCGSWTRVLQLPT 164 (175)
Q Consensus 149 ~~~~c~~~~~~~~~~~ 164 (175)
+..||+.|+|++-.|-
T Consensus 50 dTLDCRQWQRViA~PG 65 (130)
T 4hwm_A 50 DTFDCRQWQRVIAQPG 65 (130)
T ss_dssp EEEEEEESSSEEEEEE
T ss_pred Cccchhhhhhhhcccc
Confidence 5679999999998763
No 6
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=14.90 E-value=69 Score=26.56 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=31.9
Q ss_pred cCccEEEEEcCeeEEEEeEEEEEccEEEEEEecCccccccceeEEEEE
Q 030550 56 DDGLFTVELSSECYVEFDYLVYYEKTVTGKISIGSISNLKGIQVKRFL 103 (175)
Q Consensus 56 ~~G~f~v~l~~~C~~~f~~~v~Y~~~ItG~i~~gkI~~L~GVkvK~lf 103 (175)
.++..++.|++. .+.-+.-|++.|.-..|+++.|-|+-.-+
T Consensus 8 ~~s~I~~~lDKt-------~a~vGDIItATIkinnI~nfAGYQvNIKY 48 (227)
T 3ghp_A 8 KASYITMGYDKN-------AAEVGEIIKATVKINKITNFSGYQVNIKY 48 (227)
T ss_dssp CSCEEEEEESCS-------CCCTTCEEEEEEEEECCTTEEEEEEEEEC
T ss_pred CCCcEEEEeccc-------eeecCcEEEEEEEeccCCcccceEEeeee
Confidence 445555555554 57788999999999999999999987743
No 7
>3tek_A Thermodbp-single stranded DNA binding protein; leucine zipper; 2.00A {Thermoproteus tenax}
Probab=14.65 E-value=1.3e+02 Score=23.11 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=29.5
Q ss_pred HHhhhhcCCCCCCCCCCceeEEEec-CccEEEEEcCe
Q 030550 32 YEILPKFGLPQGLLPSNVVSYTLQD-DGLFTVELSSE 67 (175)
Q Consensus 32 ~elL~~~GLP~GLLP~~V~~y~l~~-~G~f~v~l~~~ 67 (175)
.|+..+|||-+|=+=.-+++-.+|. +|.+.|...+.
T Consensus 102 nE~~pky~l~kGDiFmiiTeleld~~TGEL~W~kdkt 138 (148)
T 3tek_A 102 EEAVPRYNLERGDIFMISTELVLDPDTGELLWNRDKT 138 (148)
T ss_dssp HTHHHHHTCCTTCCEEEEEEEEECTTTCCEEEEEEEE
T ss_pred hhhhhhhCCCcCcEEEEEEEEEEcCCccceEEeccCc
Confidence 4667899999998888889999995 79999876554
No 8
>3qth_A Uncharacterized protein; DINB/YFIT-like putative metalloenzymes, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.20A {Colwellia psychrerythraea}
Probab=14.08 E-value=61 Score=25.68 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=13.3
Q ss_pred CcHHHhhhhcCCCCC
Q 030550 29 PTVYEILPKFGLPQG 43 (175)
Q Consensus 29 ~ta~elL~~~GLP~G 43 (175)
.|+|.+|+..|.|.|
T Consensus 144 tTAYaILR~~GV~LG 158 (176)
T 3qth_A 144 SMVYAIAKNNGVSVT 158 (176)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhcCCCcC
Confidence 379999999999988
No 9
>3fqm_A NS5A, non-structural protein 5A; HCV, domain I, phosphoprotein, RNA-binding, metal BIND protein; 1.90A {Hepatitis c virus} PDB: 3fqq_A* 1zh1_A
Probab=13.68 E-value=78 Score=25.34 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=14.6
Q ss_pred EccEEEEEEecCccccccc
Q 030550 78 YEKTVTGKISIGSISNLKG 96 (175)
Q Consensus 78 Y~~~ItG~i~~gkI~~L~G 96 (175)
-+..|||.|++|+|+ +.|
T Consensus 29 CGa~ItGhVkNG~mr-i~g 46 (177)
T 3fqm_A 29 CGAQITGHVKNGSMR-IVG 46 (177)
T ss_dssp TSCEEEEEEETTEEE-EEC
T ss_pred CCcEEEEEEeCCEEE-Eec
Confidence 367899999999998 554
No 10
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=13.45 E-value=1.6e+02 Score=20.75 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=20.2
Q ss_pred HHHhhhhcCCCCCCCCCCce-eEEEec--CccEEEEEcCe
Q 030550 31 VYEILPKFGLPQGLLPSNVV-SYTLQD--DGLFTVELSSE 67 (175)
Q Consensus 31 a~elL~~~GLP~GLLP~~V~-~y~l~~--~G~f~v~l~~~ 67 (175)
+-+||++| |..+. +..+.+ +|.|+|++++.
T Consensus 23 aqeLl~~F-------p~~l~V~~~l~p~~~G~FEV~vng~ 55 (96)
T 2npb_A 23 KEKLEHEF-------PGCLDICGEGTPQVTGFFEVTVAGK 55 (96)
T ss_dssp HHHHHHHS-------BTTEEEEECCCSSCCSCCEEEETTE
T ss_pred HHHHHHhC-------CcceEEEEEEcCCCCcEEEEEECCE
Confidence 45667775 44455 666654 49999999875
Done!