BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030551
(175 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7ZX20|RNF8A_XENLA E3 ubiquitin-protein ligase RNF8-A OS=Xenopus laevis GN=rnf8-a PE=2
SV=1
Length = 540
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLT 132
L+ E +C IC E + V NC H+ C C ++W + E CP CR + + L +
Sbjct: 376 LDNELQCIICSEHFIEAVTLNCAHSFCSYCIKSWKKRKEECPICRQEIV-TETRSLVLDN 434
Query: 133 CTDDVID 139
C D ++D
Sbjct: 435 CIDSMVD 441
>sp|Q6NRG0|RNF8B_XENLA E3 ubiquitin-protein ligase RNF8-B OS=Xenopus laevis GN=rnf8-b PE=2
SV=1
Length = 532
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLT 132
L+ E +C IC E + V NC H+ C C ++W + E CP CR + + L +
Sbjct: 371 LDNELQCIICSEHFIEAVTLNCAHSFCSYCIKSWRKRKEECPICRQEILS-ETRSLVLDN 429
Query: 133 CTDDVID 139
C D ++D
Sbjct: 430 CIDSMVD 436
>sp|Q5ZM74|RN141_CHICK RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1
Length = 230
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 76 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLT 132
EDEC IC++ ++LP C H+ C KC W+ + SCP CR + + D WV++
Sbjct: 152 EDECCICMDGRVDLILP-CAHSFCQKCIDKWSDRHRSCPVCRRQV--TGAGDSWVVS 205
>sp|Q6IV56|RN141_DANRE RING finger protein 141 OS=Danio rerio GN=rnf141 PE=2 SV=2
Length = 222
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLT 132
L E+EC IC++ ++LP C H+ C KC W+ +S +CP CR + N + WV++
Sbjct: 141 LTDEEECCICMDGKADLILP-CAHSFCQKCIDKWSGQSRNCPVCRIQVTAAN--ESWVMS 197
>sp|Q32L15|RN141_BOVIN RING finger protein 141 OS=Bos taurus GN=RNF141 PE=2 SV=1
Length = 230
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLT 132
L E+EC IC++ ++LP C H+ C KC W+ + +CP CR M N + WV++
Sbjct: 149 LTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN--ESWVVS 205
>sp|Q5R7K8|RN141_PONAB RING finger protein 141 OS=Pongo abelii GN=RNF141 PE=2 SV=1
Length = 230
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLT 132
L E+EC IC++ ++LP C H+ C KC W+ + +CP CR M N + WV++
Sbjct: 149 LTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN--ESWVVS 205
>sp|Q8WVD5|RN141_HUMAN RING finger protein 141 OS=Homo sapiens GN=RNF141 PE=1 SV=1
Length = 230
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLT 132
L E+EC IC++ ++LP C H+ C KC W+ + +CP CR M N + WV++
Sbjct: 149 LTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN--ESWVVS 205
>sp|Q2XNS1|RN141_CANFA RING finger protein 141 OS=Canis familiaris GN=RNF141 PE=2 SV=1
Length = 231
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLT 132
L E+EC IC++ ++LP C H+ C KC W+ + +CP CR M N + WV++
Sbjct: 150 LTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN--ESWVVS 206
>sp|Q6IV57|RN141_RAT RING finger protein 141 OS=Rattus norvegicus GN=Rnf141 PE=2 SV=1
Length = 230
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLT 132
L E+EC IC++ ++LP C H+ C KC W+ + +CP CR M N + WV++
Sbjct: 149 LTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN--ESWVVS 205
>sp|Q99MB7|RN141_MOUSE RING finger protein 141 OS=Mus musculus GN=Rnf141 PE=2 SV=2
Length = 230
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLT 132
L E+EC IC++ ++LP C H+ C KC W+ + +CP CR M N + WV++
Sbjct: 149 LTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN--ESWVVS 205
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 46 LDDAKIENLEIGSFDRMRGDSQVGSADLEREDECGICLEPCTKM----VLPNCCHAMCIK 101
LD IE+L F ++G L++ EC +CL + +LP C HA I
Sbjct: 99 LDKKAIESLPFFRFSALKG--------LKQGLECSVCLSKFEDVEILRLLPKCRHAFHIG 150
Query: 102 CYRNWNTKSESCPFCRGSMKRVNSE-DLWVL--TCTDDVIDPETVSKEDLLRFYLYI 155
C W + +CP CR RVN E DL VL + T I ++ ++E+ R +YI
Sbjct: 151 CIDQWLEQHATCPLCRN---RVNIEDDLSVLGNSSTSLRILNQSETREEDSRLEIYI 204
>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2
SV=1
Length = 381
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 40 HSNLRELDDAKIENLEIGSFDRMRGDSQVGSADLERE-DECGICLEPCTK----MVLPNC 94
H R LD++ I + + F + D G D + EC +CL + ++PNC
Sbjct: 96 HEVNRGLDESAIRAIPVFKFKKR--DVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNC 153
Query: 95 CHAMCIKCYRNWNTKSESCPFCRGSM 120
CH I C W + +CP CR S+
Sbjct: 154 CHVFHIDCIDIWLQGNANCPLCRTSV 179
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 16/109 (14%)
Query: 46 LDDAKIENLEIGSFDRMRGDSQVGSADLEREDECGICLEPC----TKMVLPNCCHAMCIK 101
LD+A +E+ + ++ ++ +S++GS DLE C ICL T +LP C H I
Sbjct: 96 LDNAVVESFPVFAYSSVK-ESKIGSKDLE----CAICLNELEDHETVRLLPICNHLFHID 150
Query: 102 CYRNWNTKSESCPFCRGSM-----KRVNSEDLWVLTCTDD--VIDPETV 143
C W +CP CR ++ K + +D L D V+D ETV
Sbjct: 151 CIDTWLYSHATCPVCRSNLTAKSNKPGDEDDGVPLAAMRDHVVVDIETV 199
>sp|Q803C1|RNF8_DANRE E3 ubiquitin-protein ligase RNF8 OS=Danio rerio GN=rnf8 PE=2 SV=1
Length = 485
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 32 ILPSLQRLHSNLRELDDAKIENLEIGSFDRMRGDSQVG------SADLEREDECGICLEP 85
++ L+ +E+ AK + LE+ ++ + +Q + LE E +C IC E
Sbjct: 339 VIEELKHAWQGFKEVLQAKDKELEVTKEEKEKAKAQKEEVVTQMTEVLESELQCSICSEL 398
Query: 86 CTKMVLPNCCHAMCIKCYRNWNTKSESCPFC 116
+ V NC H+ C C W + + CP C
Sbjct: 399 FIEAVTLNCAHSFCQHCISEWRNRKDKCPMC 429
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Query: 29 YGVILPSLQRLHSNLRELDDAKIENLEIGSFDRMRGDSQVGSA------DLEREDECGIC 82
Y ++ L R N + AK + LE ++ + +Q LE E +C IC
Sbjct: 349 YRSLVEELNRSKKNFEAIIQAKDKELEQTKEEKEKVQAQKEEVLSHMNDVLENELQCIIC 408
Query: 83 LEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLTCTDDVID 139
E + V NC H+ C C W + CP CR +K + L + C ++D
Sbjct: 409 SEYFVEAVTLNCAHSFCSYCINEWMKRKVECPICRKDIKS-KTRSLVLDNCISKMVD 464
>sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2
SV=1
Length = 369
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 37 QRLHSNLRELDDAKIENLEIGSFDRMRGDSQVGSADLEREDECGICL----EPCTKMVLP 92
Q H + LD A I+ L + + ++G + +C +CL E +LP
Sbjct: 110 QLFHLHDSGLDQALIDALPVFLYKEIKGTKE--------PFDCAVCLCEFSEDDKLRLLP 161
Query: 93 NCCHAMCIKCYRNWNTKSESCPFCRGSM 120
NC HA I C W + +CP CRG++
Sbjct: 162 NCSHAFHIDCIDTWLLSNSTCPLCRGTL 189
>sp|Q13064|MKRN3_HUMAN Probable E3 ubiquitin-protein ligase makorin-3 OS=Homo sapiens
GN=MKRN3 PE=1 SV=1
Length = 507
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 35/120 (29%)
Query: 35 SLQRLH--------SNLRELDDAKIENLEIGSFDRMRGDSQVGSADLEREDECGICLEPC 86
LQ LH ++R +A +++E+ SF RG +V CGIC+E
Sbjct: 270 GLQTLHPMDAAQREEHMRACIEAHEKDMEL-SFAVQRGMDKV----------CGICMEVV 318
Query: 87 TKM---------VLPNCCHAMCIKCYRNWNTKSE-------SCPFCRGSMKRVNSEDLWV 130
+ +L NC H+ CI+C R W + + SCP CR + + V + WV
Sbjct: 319 YEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVKSCPQCRVTSELVIPSEFWV 378
>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2
SV=1
Length = 362
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 32 ILPSLQRLHSNLRELDDAKIENLEIGSFDRMRGDSQVGSADLEREDECGICL----EPCT 87
S QR+ +N L+++ I+++ + + GD V +D C +CL E +
Sbjct: 103 FFSSTQRISTNGDGLNESMIKSITV--YKYKSGDGFVDGSD------CSVCLSEFEENES 154
Query: 88 KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNS 125
+LP C HA + C W +CP CR + VN+
Sbjct: 155 LRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNN 192
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 78 ECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSM 120
EC IC E + +C H C +C NW +S+SCP CR +
Sbjct: 84 ECPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKL 126
>sp|Q60764|MKRN3_MOUSE Probable E3 ubiquitin-protein ligase makorin-3 OS=Mus musculus
GN=Mkrn3 PE=2 SV=2
Length = 544
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 16/68 (23%)
Query: 79 CGICLE-------PCTKM--VLPNCCHAMCIKCYRNW-------NTKSESCPFCRGSMKR 122
CGIC+E P + +L +C H C++C R W N S+SCP CR S
Sbjct: 347 CGICMEVVYEKADPSDRRFGILFSCNHTYCLRCIRRWRSATQFENRISKSCPQCRVSSGF 406
Query: 123 VNSEDLWV 130
V + WV
Sbjct: 407 VIPSEFWV 414
>sp|Q8VYC8|RIN2_ARATH E3 ubiquitin protein ligase RIN2 OS=Arabidopsis thaliana GN=RIN2
PE=1 SV=1
Length = 578
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 16/82 (19%)
Query: 76 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS----ESCPFCRGSMKRVNSEDLWVL 131
+DEC IC EP K +C H + C R+W + SCP CR + +
Sbjct: 334 DDECAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCRKPL---------FV 384
Query: 132 TCTDDVIDPETV---SKEDLLR 150
T++ ++P TV S E L R
Sbjct: 385 GRTENEVNPRTVEVSSDEQLAR 406
>sp|Q7ZWF4|RN145_DANRE RING finger protein 145 OS=Danio rerio GN=rnf145 PE=2 SV=1
Length = 685
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 74 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121
+ D C IC + V+ C H C + W E+CP C G +K
Sbjct: 532 QHNDICSICFQDMKSAVITPCSHFFHAACLKKWLYVQETCPLCHGQLK 579
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 46 LDDAKIENLEIGSFDRMRGDSQVGSADLEREDECGICLEPCTKM----VLPNCCHAMCIK 101
LD IE+L + F ++G Q +C +CL + +LP C HA I
Sbjct: 98 LDKTAIESLPLFRFSALKGSKQ--------GLDCSVCLSKFESVEILRLLPKCRHAFHIG 149
Query: 102 CYRNWNTKSESCPFCRGSMKRVN-SEDLWVLT 132
C W + +CP CR RV+ ED VLT
Sbjct: 150 CIDQWLEQHATCPLCR---DRVSMEEDSSVLT 178
>sp|Q9FGJ6|ATL79_ARATH RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2
SV=1
Length = 166
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 45 ELDDAKIENLEIGSFDRMRGDSQVGSADLE---REDECGICLEPCTK----MVLPNCCHA 97
E +D + E + + V S+DLE E EC ICL + VL C H
Sbjct: 70 ETEDDHKPDPEAAASSTPTTPTLVYSSDLELAGAEAECAICLSEFEQGESIQVLEKCQHG 129
Query: 98 MCIKCYRNWNTKSESCPFCRGSMKRVNSE 126
+KC W + SCP CR S+ +SE
Sbjct: 130 FHVKCIHKWLSTRSSCPTCRTSIFSQHSE 158
>sp|Q4VBT5|MKRN1_DANRE Probable E3 ubiquitin-protein ligase makorin-1 OS=Danio rerio
GN=mkrn1 PE=2 SV=1
Length = 439
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 16/68 (23%)
Query: 79 CGICLE-------PCTKM--VLPNCCHAMCIKCYRNWNTKSE-------SCPFCRGSMKR 122
CG+C+E P + +L NCCH C+KC R W + + SCP CR +
Sbjct: 236 CGVCMEVVFEKTNPSERRFGILSNCCHCYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 295
Query: 123 VNSEDLWV 130
V + WV
Sbjct: 296 VIPSEYWV 303
>sp|Q9ZVT8|RF4_ARATH Putative E3 ubiquitin-protein ligase RF4 OS=Arabidopsis thaliana
GN=RF4 PE=3 SV=1
Length = 823
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 20 GRKATIREFYGVILPSLQRLHSNLREL----DDAKIENLEIGSFD-RMRGDSQVGSADLE 74
G+ T ++Y + +++RL + EL D ++I L+ GS + + +G ++
Sbjct: 707 GKAETDVKYY---IDNIKRLEREISELKLKSDYSRIIALKKGSSESKATKRESLGMPKVK 763
Query: 75 REDECGICLEPCTKMVLPNCCH-AMCIKCYRNWNTKS-ESCPFCRGSMKR 122
RE EC +CL ++ C H +C KC + + CP CRG++ R
Sbjct: 764 RERECVMCLSEEMSVIFLPCAHQVLCFKCNQLHEKEGMMDCPSCRGTIHR 813
>sp|Q5R4I2|RNF8_PONAB E3 ubiquitin-protein ligase RNF8 OS=Pongo abelii GN=RNF8 PE=2 SV=1
Length = 486
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121
LE E +C IC E + V NC H+ C C W + CP CR +K
Sbjct: 398 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 446
>sp|Q9FHG8|ATL50_ARATH Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana
GN=ATL50 PE=3 SV=1
Length = 210
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 35 SLQRLHSNLRELDDAKIENLEIGSFDRMRGDSQVGSADLERED--ECGICLEPCTK---- 88
+LQ + L DA+I+ I + + + +G R D +C +CL T
Sbjct: 80 ALQGRYQTRFNLHDAEIDQSFIDALPLLHYKTMIGL----RHDLSDCAVCLREFTAEDEL 135
Query: 89 MVLPNCCHAMCIKCYRNWNTKSESCPFCR 117
+LP C HA ++C W + +CP CR
Sbjct: 136 RLLPKCSHAFHVECIDTWLLTNSTCPLCR 164
>sp|O76064|RNF8_HUMAN E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1
Length = 485
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121
LE E +C IC E + V NC H+ C C W + CP CR +K
Sbjct: 397 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 445
>sp|Q00940|PEX10_PICAN Peroxisome biogenesis factor 10 OS=Pichia angusta GN=PEX10 PE=3
SV=1
Length = 295
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 74 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121
E C +CL P C H C KC +W + + CP CR M+
Sbjct: 240 EASRTCMLCLSPMKDPSCGECGHVFCWKCVLDWVKERQECPLCRAKMR 287
>sp|Q9FL07|ATL46_ARATH RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2
SV=1
Length = 376
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 14 PSLTSPGRKATIREFYG--VILPSLQRL-HSNLRELDDAKIENLEIGSFDRMRGDSQVGS 70
PS T+ R E + LQ+L H N LD A I+ L + + + G + G
Sbjct: 73 PSATASSRSNRFPEISTSDALQRQLQQLFHLNDSGLDQAFIDALPVFHYKEIVGSAGGGG 132
Query: 71 ADLERED--ECGICL----EPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSM 120
+ ++ +C +CL E +LP C HA + C W + +CP CRG++
Sbjct: 133 GNGAAQEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCRGTL 188
>sp|Q8W4Q5|RIN3_ARATH E3 ubiquitin protein ligase RIN3 OS=Arabidopsis thaliana GN=RIN3
PE=1 SV=2
Length = 577
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 76 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS----ESCPFCRGSM--KRVNSE 126
+DEC IC EP K +C H + C R+W + SCP CR + R SE
Sbjct: 334 DDECAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCRKPLFVGRTESE 390
>sp|Q8VC56|RNF8_MOUSE E3 ubiquitin-protein ligase RNF8 OS=Mus musculus GN=Rnf8 PE=1 SV=1
Length = 488
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK-RVNSEDLWVL 131
LE E +C IC E + V NC H+ C C W + CP CR ++ R NS L +
Sbjct: 400 LENELQCIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECPICRKDIESRTNS--LVLD 457
Query: 132 TCTDDVID 139
C ++D
Sbjct: 458 NCISKMVD 465
>sp|Q810L3|CHFR_MOUSE E3 ubiquitin-protein ligase CHFR OS=Mus musculus GN=Chfr PE=1 SV=1
Length = 664
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 56/144 (38%), Gaps = 24/144 (16%)
Query: 2 GEFFLHVSADDRPSLTSPGRKATIREFYGVILPSLQRLHS-NLRELDDAKIENLEIGSFD 60
G +S R SL + G +++ + S L S + EL+ AK + G D
Sbjct: 207 GPGNTSISPKGRSSLVANGELSSLSPVFQDKEASFSLLESKDHEELEPAKKKMKGDGELD 266
Query: 61 R--------MRGDSQVGSAD----------LEREDECGIC---LEPCTKMVLPNCCHAMC 99
RG++Q S D +E C IC L C + L C H C
Sbjct: 267 TNLQLLVSGQRGNAQTSSEDVKDASVKPDKMEETLTCIICQDLLHDC--VSLQPCMHTFC 324
Query: 100 IKCYRNWNTKSESCPFCRGSMKRV 123
CY W +S CP CR ++R+
Sbjct: 325 AACYSGWMERSSLCPTCRCPVERI 348
>sp|Q96MT1|RN145_HUMAN RING finger protein 145 OS=Homo sapiens GN=RNF145 PE=2 SV=2
Length = 663
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 14/126 (11%)
Query: 25 IREFYGVILPSLQRLHSNLRELDDA-KIENLEIGSFDRMRGDSQVGSADLEREDECGICL 83
I +Y V L + S L D KI++L I + +++ + D C IC
Sbjct: 492 IHSYYNVWLRAQLGWKSFLLRRDAVNKIKSLPIATKEQLE----------KHNDICAICY 541
Query: 84 EPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLTCTDDVIDPETV 143
+ V+ C H C + W E+CP C +K NS L L T+ V+ P
Sbjct: 542 QDMKSAVITPCSHFFHAGCLKKWLYVQETCPLCHCHLK--NSSQLPGLG-TEPVLQPHAG 598
Query: 144 SKEDLL 149
++++++
Sbjct: 599 AEQNVM 604
>sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 1
OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1
Length = 881
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 78 ECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSES-CPFCRGSMKR 122
+C IC+ P T +++ C H C C +S+ CP CRGS+ +
Sbjct: 634 DCPICISPPTNIIITRCAHIFCRACILQTLQRSKPLCPLCRGSLTQ 679
>sp|Q9SLC4|ATL40_ARATH RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2
SV=1
Length = 217
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 78 ECGICL----EPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCR 117
EC +CL E +LPNC H + C W T +CP CR
Sbjct: 99 ECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCR 142
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 78 ECGICL----EPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRG 118
EC +CL E T VLPNC H + C W +CP CR
Sbjct: 118 ECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRS 162
>sp|P29836|ICP0_BHV1K E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.2 (strain
K22) GN=BICP0 PE=3 SV=1
Length = 676
Score = 39.7 bits (91), Expect = 0.010, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 79 CGICLEPCT--KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRV 123
C ICL+ T LP C HA C+ C R W +CP C+ ++ +
Sbjct: 13 CCICLDAITGAARALP-CLHAFCLACIRRWLEGRPTCPLCKAPVQSL 58
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 70 SADLEREDECGICLEPCTKM----VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVN 124
+ LE+ +C +CL + +LP C HA + C W + +CP CR S+ N
Sbjct: 198 TISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSLSTSN 256
>sp|P29128|ICP0_BHV1J E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.1 (strain
Jura) GN=BICP0 PE=3 SV=1
Length = 676
Score = 39.7 bits (91), Expect = 0.011, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 79 CGICLEPCT--KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRV 123
C ICL+ T LP C HA C+ C R W +CP C+ ++ +
Sbjct: 13 CCICLDAITGAARALP-CLHAFCLACIRRWLEGRPTCPLCKAPVQSL 58
>sp|Q9DD48|MKRN2_SERQU Probable E3 ubiquitin-protein ligase makorin-2 OS=Seriola
quinqueradiata GN=mkrn2 PE=2 SV=1
Length = 423
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 16/77 (20%)
Query: 70 SADLEREDECGICLEPCTKM---------VLPNCCHAMCIKCYRNW-------NTKSESC 113
+A L ++ C IC+E + +L +CCH C+ C R W NT +SC
Sbjct: 226 AAQLSQDKVCSICMEVVVQKANPSDRRFGILSSCCHTFCLACIRKWRCTRTFSNTIIKSC 285
Query: 114 PFCRGSMKRVNSEDLWV 130
P CR + V WV
Sbjct: 286 PECRVVSEFVIPSVYWV 302
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 21/111 (18%)
Query: 13 RPSLTSPGRKATIREFYGVILPSLQRLHSNLRELDDAKIENLEIGSFDRMRGDSQVGSAD 72
R S SP R +T V++ R +S R LD + +L + + + A
Sbjct: 91 RSSRMSPRRLST-----SVVV---SRPYSFRRGLDSQAVRSLPVYRYTK---------AA 133
Query: 73 LEREDECGICL----EPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGS 119
+R ++C ICL E T V+P+C H + C W + +CP CR +
Sbjct: 134 KQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRSN 184
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 3 OS=Arabidopsis
thaliana GN=At5g43530 PE=3 SV=1
Length = 1277
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 78 ECGICLEPCTKMVLPNCCHAMCIKC-YRNWNTKS-ESCPFCRGSMKRVNSEDLWVLTCTD 135
EC ICLE VL C H MC +C +W + S CP CR +KR +++C
Sbjct: 1039 ECPICLESADDPVLTPCAHRMCRECLLTSWRSPSCGLCPICRTILKRTE-----LISCPT 1093
Query: 136 DVI 138
D I
Sbjct: 1094 DSI 1096
>sp|Q4KLN8|RNF8_RAT E3 ubiquitin-protein ligase RNF8 OS=Rattus norvegicus GN=Rnf8 PE=2
SV=1
Length = 487
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK-RVNS 125
LE E +C IC E + V NC H+ C C W + CP CR ++ R NS
Sbjct: 399 LENELQCIICSEYFIEAVTLNCAHSFCSFCISEWMKRKVECPICRKDIESRTNS 452
>sp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2
SV=2
Length = 407
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 15/90 (16%)
Query: 46 LDDAKIENLEIGSFDRMRGDSQVGSADLEREDECGICL---EPCTKM-VLPNCCHAMCIK 101
+D + IE+L + F + G EC +CL EP + +LP C HA ++
Sbjct: 121 IDRSVIESLPVFRFGALSGHKD--------GLECAVCLARFEPTEVLRLLPKCKHAFHVE 172
Query: 102 CYRNWNTKSESCPFCRGSMKRVNSEDLWVL 131
C W +CP CR RV+ ED+ ++
Sbjct: 173 CVDTWLDAHSTCPLCR---YRVDPEDILLI 199
>sp|Q13434|MKRN4_HUMAN Putative E3 ubiquitin-protein ligase makorin-4 OS=Homo sapiens
GN=MKRN4P PE=5 SV=1
Length = 485
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 16/68 (23%)
Query: 79 CGICLEPCTKM---------VLPNCCHAMCIKCYRNWNTKSE-------SCPFCRGSMKR 122
CGIC+E + +L NC H C+KC R W + E SCP CR +
Sbjct: 316 CGICMEVVYEKANPNEHRFGILSNCNHTFCLKCIRKWRSAKEFESRIVKSCPQCRITSNF 375
Query: 123 VNSEDLWV 130
V + WV
Sbjct: 376 VIPSEYWV 383
>sp|Q7YR34|TRI26_PANTR Tripartite motif-containing protein 26 OS=Pan troglodytes GN=TRIM26
PE=3 SV=1
Length = 539
Score = 39.3 bits (90), Expect = 0.015, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSES---CPFCRGSMKRVNSEDLW 129
LE E C ICL+ V +C H C C + S S CP C+ K+ N +W
Sbjct: 10 LEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENIRPVW 69
Query: 130 VLTCTDDVIDPETVSK 145
L + I+ V K
Sbjct: 70 QLASLVENIERLKVDK 85
>sp|Q12899|TRI26_HUMAN Tripartite motif-containing protein 26 OS=Homo sapiens GN=TRIM26
PE=2 SV=1
Length = 539
Score = 39.3 bits (90), Expect = 0.015, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSES---CPFCRGSMKRVNSEDLW 129
LE E C ICL+ V +C H C C + S S CP C+ K+ N +W
Sbjct: 10 LEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENIRPVW 69
Query: 130 VLTCTDDVIDPETVSK 145
L + I+ V K
Sbjct: 70 QLASLVENIERLKVDK 85
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 74 EREDECGICLEPC----TKMVLPNCCHAMCIKCYRNWNTKSESCPFCR 117
E D C +CL+ T LP+C H + C NW + SCP CR
Sbjct: 191 ENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCR 238
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,672,453
Number of Sequences: 539616
Number of extensions: 2750474
Number of successful extensions: 7655
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 367
Number of HSP's that attempted gapping in prelim test: 7308
Number of HSP's gapped (non-prelim): 645
length of query: 175
length of database: 191,569,459
effective HSP length: 110
effective length of query: 65
effective length of database: 132,211,699
effective search space: 8593760435
effective search space used: 8593760435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)