Query 030551
Match_columns 175
No_of_seqs 220 out of 1997
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 15:27:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02929 N1R/p28-like protein; 99.4 2.3E-13 5E-18 109.6 3.4 56 74-129 172-235 (238)
2 KOG0317 Predicted E3 ubiquitin 99.3 9.8E-13 2.1E-17 107.1 3.5 49 73-121 236-284 (293)
3 PLN03208 E3 ubiquitin-protein 99.3 1.6E-12 3.4E-17 101.2 4.1 51 72-122 14-80 (193)
4 PF13639 zf-RING_2: Ring finge 99.3 1.7E-13 3.7E-18 82.7 -1.3 41 77-117 1-44 (44)
5 PF13920 zf-C3HC4_3: Zinc fing 99.3 9.8E-13 2.1E-17 81.5 1.0 47 76-122 2-49 (50)
6 PHA02926 zinc finger-like prot 99.3 2.5E-12 5.4E-17 101.5 2.8 57 73-129 167-238 (242)
7 KOG1039 Predicted E3 ubiquitin 99.2 2.7E-12 5.8E-17 108.2 1.9 98 74-171 159-271 (344)
8 KOG0823 Predicted E3 ubiquitin 99.2 4.8E-12 1E-16 100.3 2.9 49 73-121 44-95 (230)
9 KOG0320 Predicted E3 ubiquitin 99.2 9E-12 1.9E-16 95.1 2.1 49 74-122 129-179 (187)
10 PF13923 zf-C3HC4_2: Zinc fing 99.2 6.1E-12 1.3E-16 74.0 0.9 38 79-116 1-39 (39)
11 PF12678 zf-rbx1: RING-H2 zinc 99.1 2E-11 4.3E-16 81.6 2.0 42 76-117 19-73 (73)
12 PF15227 zf-C3HC4_4: zinc fing 99.1 2.6E-11 5.5E-16 72.5 1.8 38 79-116 1-42 (42)
13 COG5243 HRD1 HRD ubiquitin lig 99.0 3.7E-10 8E-15 95.0 5.7 49 73-121 284-345 (491)
14 KOG4628 Predicted E3 ubiquitin 99.0 7.5E-10 1.6E-14 93.3 6.9 46 77-122 230-279 (348)
15 smart00504 Ubox Modified RING 99.0 2.1E-10 4.6E-15 73.8 2.8 45 77-121 2-46 (63)
16 cd00162 RING RING-finger (Real 99.0 2E-10 4.4E-15 68.1 2.2 43 78-120 1-45 (45)
17 TIGR00599 rad18 DNA repair pro 99.0 3.6E-10 7.8E-15 97.1 3.4 51 72-122 22-72 (397)
18 PF00097 zf-C3HC4: Zinc finger 98.9 2.2E-10 4.7E-15 67.8 1.1 38 79-116 1-41 (41)
19 PF12861 zf-Apc11: Anaphase-pr 98.9 5.5E-10 1.2E-14 76.0 2.6 48 75-122 20-83 (85)
20 PF14634 zf-RING_5: zinc-RING 98.9 9E-10 1.9E-14 66.4 2.6 41 78-118 1-44 (44)
21 KOG0287 Postreplication repair 98.9 4E-10 8.6E-15 93.8 1.3 49 74-122 21-69 (442)
22 COG5432 RAD18 RING-finger-cont 98.9 5.6E-10 1.2E-14 91.3 1.4 50 73-122 22-71 (391)
23 KOG2164 Predicted E3 ubiquitin 98.8 1.2E-09 2.6E-14 95.2 2.2 47 76-122 186-237 (513)
24 smart00184 RING Ring finger. E 98.8 2E-09 4.3E-14 61.6 2.0 38 79-116 1-39 (39)
25 COG5574 PEX10 RING-finger-cont 98.8 2.1E-09 4.6E-14 86.8 2.1 48 74-121 213-262 (271)
26 COG5540 RING-finger-containing 98.8 2.4E-09 5.1E-14 88.1 1.9 46 76-121 323-372 (374)
27 KOG1002 Nucleotide excision re 98.6 1.1E-08 2.3E-13 89.7 1.2 105 5-121 476-586 (791)
28 KOG4172 Predicted E3 ubiquitin 98.6 1.7E-08 3.7E-13 62.7 0.9 47 76-122 7-55 (62)
29 KOG0802 E3 ubiquitin ligase [P 98.5 1.8E-08 3.9E-13 90.4 0.7 48 73-120 288-340 (543)
30 PF04564 U-box: U-box domain; 98.5 2.7E-08 5.8E-13 66.3 1.3 48 75-122 3-51 (73)
31 PF13445 zf-RING_UBOX: RING-ty 98.5 1.9E-08 4.1E-13 60.3 0.0 35 79-114 1-43 (43)
32 PF14835 zf-RING_6: zf-RING of 98.5 8.5E-08 1.8E-12 61.8 1.9 44 76-121 7-51 (65)
33 KOG0978 E3 ubiquitin ligase in 98.4 3.7E-08 7.9E-13 89.4 0.1 48 75-122 642-690 (698)
34 TIGR00570 cdk7 CDK-activating 98.4 1.9E-07 4E-12 77.8 3.9 48 76-123 3-56 (309)
35 COG5194 APC11 Component of SCF 98.4 1.3E-07 2.8E-12 63.3 1.5 46 77-122 21-82 (88)
36 KOG2177 Predicted E3 ubiquitin 98.4 1.3E-07 2.8E-12 76.2 1.7 46 73-118 10-55 (386)
37 KOG1734 Predicted RING-contain 98.3 4.7E-07 1E-11 73.6 3.7 55 75-129 223-290 (328)
38 KOG1493 Anaphase-promoting com 98.3 1.5E-07 3.3E-12 62.4 -0.0 46 76-121 20-81 (84)
39 KOG4265 Predicted E3 ubiquitin 98.3 3.9E-07 8.5E-12 76.6 2.2 49 74-122 288-337 (349)
40 KOG0828 Predicted E3 ubiquitin 98.2 6.9E-07 1.5E-11 77.9 1.4 49 73-121 568-634 (636)
41 KOG1785 Tyrosine kinase negati 98.1 8E-07 1.7E-11 75.8 1.5 48 77-124 370-419 (563)
42 KOG4159 Predicted E3 ubiquitin 98.1 1.9E-06 4.1E-11 74.4 2.5 50 73-122 81-130 (398)
43 KOG0824 Predicted E3 ubiquitin 98.1 1.9E-06 4.1E-11 71.1 2.3 46 76-121 7-53 (324)
44 KOG0297 TNF receptor-associate 98.0 5.8E-06 1.2E-10 71.6 3.3 49 73-121 18-67 (391)
45 KOG0804 Cytoplasmic Zn-finger 97.9 4.5E-06 9.9E-11 72.1 2.5 49 71-121 170-222 (493)
46 COG5219 Uncharacterized conser 97.9 5.3E-06 1.2E-10 77.2 2.1 50 73-122 1466-1524(1525)
47 PF11793 FANCL_C: FANCL C-term 97.9 1.6E-06 3.5E-11 57.3 -0.9 46 76-121 2-66 (70)
48 COG5152 Uncharacterized conser 97.8 8.1E-06 1.8E-10 63.8 1.8 46 76-121 196-241 (259)
49 KOG0311 Predicted E3 ubiquitin 97.8 1.1E-06 2.5E-11 73.7 -3.1 48 74-121 41-90 (381)
50 KOG4692 Predicted E3 ubiquitin 97.7 2.7E-05 5.8E-10 65.8 3.7 50 73-122 419-468 (489)
51 KOG2879 Predicted E3 ubiquitin 97.7 9.5E-05 2.1E-09 60.4 6.6 52 70-121 233-287 (298)
52 KOG1813 Predicted E3 ubiquitin 97.7 1.3E-05 2.8E-10 66.0 1.6 45 77-121 242-286 (313)
53 PHA03096 p28-like protein; Pro 97.6 8.6E-06 1.9E-10 67.5 -0.6 57 77-133 179-259 (284)
54 smart00744 RINGv The RING-vari 97.6 2.7E-05 5.9E-10 47.9 1.4 40 78-117 1-49 (49)
55 KOG2930 SCF ubiquitin ligase, 97.6 2.4E-05 5.2E-10 54.9 1.1 46 76-121 46-108 (114)
56 KOG0825 PHD Zn-finger protein 97.6 1.2E-05 2.6E-10 73.6 -0.8 51 77-127 124-177 (1134)
57 KOG0827 Predicted E3 ubiquitin 97.5 2.5E-05 5.5E-10 66.5 0.8 44 77-120 5-55 (465)
58 KOG2660 Locus-specific chromos 97.5 1.4E-05 3.1E-10 66.6 -0.9 49 74-122 13-62 (331)
59 PF11789 zf-Nse: Zinc-finger o 97.5 4.4E-05 9.4E-10 48.5 1.3 41 75-115 10-53 (57)
60 KOG1645 RING-finger-containing 97.4 7.9E-05 1.7E-09 63.9 1.8 46 76-121 4-56 (463)
61 KOG4275 Predicted E3 ubiquitin 97.3 2.3E-05 5E-10 64.5 -1.8 43 76-122 300-343 (350)
62 KOG1001 Helicase-like transcri 97.2 4.4E-05 9.6E-10 70.2 -1.4 112 8-122 386-501 (674)
63 KOG4739 Uncharacterized protei 97.0 0.00028 6.1E-09 56.7 1.4 44 78-123 5-50 (233)
64 PF14570 zf-RING_4: RING/Ubox 96.9 0.00065 1.4E-08 41.5 2.3 42 79-120 1-47 (48)
65 COG5236 Uncharacterized conser 96.9 0.00057 1.2E-08 57.8 2.6 55 69-123 54-110 (493)
66 KOG1571 Predicted E3 ubiquitin 96.7 0.0012 2.7E-08 55.8 3.0 47 73-122 302-348 (355)
67 KOG3002 Zn finger protein [Gen 96.7 0.00089 1.9E-08 56.0 2.0 45 73-121 45-91 (299)
68 KOG4185 Predicted E3 ubiquitin 96.7 0.0012 2.6E-08 54.8 2.5 44 77-120 4-54 (296)
69 KOG1428 Inhibitor of type V ad 96.4 0.00073 1.6E-08 65.9 -0.3 48 74-121 3484-3544(3738)
70 PF10367 Vps39_2: Vacuolar sor 96.3 0.0024 5.2E-08 44.7 2.1 33 72-104 74-108 (109)
71 KOG3039 Uncharacterized conser 96.3 0.0025 5.3E-08 51.7 2.3 47 75-121 220-270 (303)
72 PF14447 Prok-RING_4: Prokaryo 96.3 0.0027 5.8E-08 39.8 1.9 43 77-121 8-50 (55)
73 COG5222 Uncharacterized conser 96.1 0.0026 5.7E-08 52.9 1.4 42 77-118 275-318 (427)
74 KOG4445 Uncharacterized conser 96.0 0.0018 3.8E-08 53.8 0.2 45 77-121 116-186 (368)
75 PF07800 DUF1644: Protein of u 95.9 0.0056 1.2E-07 46.4 2.1 31 76-106 2-45 (162)
76 PF10272 Tmpp129: Putative tra 95.8 0.0083 1.8E-07 51.4 3.3 51 73-123 268-353 (358)
77 PF04641 Rtf2: Rtf2 RING-finge 95.8 0.0091 2E-07 49.0 3.3 48 73-121 110-161 (260)
78 KOG2114 Vacuolar assembly/sort 95.7 0.0032 6.9E-08 58.6 0.4 42 76-120 840-882 (933)
79 KOG1941 Acetylcholine receptor 95.7 0.0026 5.6E-08 54.6 -0.3 47 74-120 363-415 (518)
80 KOG0826 Predicted E3 ubiquitin 95.6 0.0059 1.3E-07 51.3 1.7 46 74-119 298-344 (357)
81 COG5175 MOT2 Transcriptional r 95.6 0.0098 2.1E-07 50.4 2.9 45 77-121 15-64 (480)
82 PHA02825 LAP/PHD finger-like p 95.4 0.02 4.3E-07 43.5 3.6 47 74-121 6-59 (162)
83 KOG1814 Predicted E3 ubiquitin 95.2 0.0086 1.9E-07 51.7 1.3 32 75-106 183-217 (445)
84 PHA02862 5L protein; Provision 95.1 0.016 3.6E-07 43.3 2.4 44 77-121 3-53 (156)
85 KOG2932 E3 ubiquitin ligase in 94.8 0.012 2.6E-07 49.2 1.0 45 77-123 91-136 (389)
86 KOG3268 Predicted E3 ubiquitin 94.7 0.024 5.2E-07 43.9 2.4 48 77-124 166-231 (234)
87 KOG2034 Vacuolar sorting prote 94.5 0.022 4.8E-07 53.4 2.2 34 73-106 814-849 (911)
88 KOG3970 Predicted E3 ubiquitin 94.2 0.029 6.3E-07 45.0 2.0 47 75-121 49-105 (299)
89 KOG3800 Predicted E3 ubiquitin 93.9 0.035 7.6E-07 46.0 2.0 45 78-122 2-52 (300)
90 KOG1100 Predicted E3 ubiquitin 93.9 0.024 5.2E-07 45.1 1.0 40 78-121 160-200 (207)
91 KOG1952 Transcription factor N 93.8 0.036 7.9E-07 51.8 2.1 47 75-121 190-247 (950)
92 KOG0298 DEAD box-containing he 93.2 0.013 2.8E-07 56.9 -1.9 46 75-120 1152-1198(1394)
93 PF08746 zf-RING-like: RING-li 93.2 0.073 1.6E-06 31.6 2.0 38 79-116 1-43 (43)
94 PF05290 Baculo_IE-1: Baculovi 92.8 0.083 1.8E-06 39.0 2.3 48 75-122 79-133 (140)
95 KOG4367 Predicted Zn-finger pr 92.6 0.058 1.3E-06 47.2 1.4 35 74-108 2-36 (699)
96 COG5220 TFB3 Cdk activating ki 92.2 0.053 1.1E-06 44.0 0.6 47 75-121 9-64 (314)
97 PF14569 zf-UDP: Zinc-binding 92.1 0.17 3.6E-06 33.9 2.8 52 75-126 8-67 (80)
98 PF12906 RINGv: RING-variant d 91.8 0.057 1.2E-06 32.7 0.3 38 79-116 1-47 (47)
99 KOG3053 Uncharacterized conser 91.7 0.07 1.5E-06 43.6 0.8 56 74-129 18-90 (293)
100 KOG1940 Zn-finger protein [Gen 91.6 0.096 2.1E-06 43.4 1.5 42 77-118 159-204 (276)
101 KOG1812 Predicted E3 ubiquitin 91.4 0.097 2.1E-06 45.4 1.4 34 75-108 145-182 (384)
102 KOG2817 Predicted E3 ubiquitin 90.8 0.14 3E-06 44.2 1.8 42 77-118 335-382 (394)
103 KOG3899 Uncharacterized conser 90.3 0.1 2.2E-06 43.5 0.5 30 94-123 325-367 (381)
104 KOG4362 Transcriptional regula 90.2 0.067 1.5E-06 49.2 -0.6 45 77-121 22-69 (684)
105 PF05883 Baculo_RING: Baculovi 90.0 0.084 1.8E-06 39.1 -0.2 32 76-107 26-66 (134)
106 KOG0309 Conserved WD40 repeat- 89.1 0.19 4.2E-06 46.8 1.3 39 77-115 1029-1069(1081)
107 PLN02638 cellulose synthase A 88.8 0.66 1.4E-05 45.0 4.7 55 75-129 16-78 (1079)
108 KOG3039 Uncharacterized conser 88.5 0.33 7.1E-06 39.6 2.2 34 74-107 41-74 (303)
109 PLN02189 cellulose synthase 88.3 0.68 1.5E-05 44.8 4.4 53 75-127 33-93 (1040)
110 PF03854 zf-P11: P-11 zinc fin 88.1 0.31 6.6E-06 29.6 1.3 43 78-122 4-47 (50)
111 PLN02436 cellulose synthase A 88.0 0.64 1.4E-05 45.0 4.1 54 74-127 34-95 (1094)
112 KOG1815 Predicted E3 ubiquitin 86.4 0.41 8.9E-06 42.2 1.8 35 74-108 68-103 (444)
113 PLN02400 cellulose synthase 86.1 0.88 1.9E-05 44.2 3.9 54 74-127 34-95 (1085)
114 KOG3161 Predicted E3 ubiquitin 86.1 0.2 4.4E-06 45.9 -0.3 36 77-114 12-51 (861)
115 PF02891 zf-MIZ: MIZ/SP-RING z 85.0 0.48 1E-05 29.0 1.1 42 77-119 3-50 (50)
116 KOG0827 Predicted E3 ubiquitin 82.6 0.08 1.7E-06 45.6 -4.1 46 76-121 196-245 (465)
117 KOG3579 Predicted E3 ubiquitin 82.5 0.47 1E-05 39.4 0.4 34 75-108 267-304 (352)
118 COG5183 SSM4 Protein involved 82.3 1.1 2.4E-05 42.3 2.7 49 75-123 11-68 (1175)
119 KOG1812 Predicted E3 ubiquitin 81.2 0.67 1.4E-05 40.2 0.9 40 76-116 306-351 (384)
120 PLN02915 cellulose synthase A 81.2 2.2 4.7E-05 41.4 4.3 53 75-127 14-74 (1044)
121 PF04216 FdhE: Protein involve 80.1 0.28 6.2E-06 40.7 -1.7 45 74-118 170-219 (290)
122 KOG0825 PHD Zn-finger protein 79.3 1.1 2.3E-05 42.3 1.6 46 76-121 96-154 (1134)
123 PF10571 UPF0547: Uncharacteri 78.4 1.4 3.1E-05 23.2 1.2 7 79-85 3-9 (26)
124 PF02318 FYVE_2: FYVE-type zin 77.0 0.23 4.9E-06 35.8 -2.8 47 75-121 53-105 (118)
125 PRK03564 formate dehydrogenase 76.7 1 2.2E-05 38.0 0.6 44 75-118 186-234 (309)
126 KOG2231 Predicted E3 ubiquitin 76.2 2.4 5.1E-05 39.4 2.9 44 78-121 2-52 (669)
127 KOG0269 WD40 repeat-containing 76.1 1.8 3.9E-05 40.5 2.1 42 77-118 780-825 (839)
128 KOG2068 MOT2 transcription fac 75.6 2.4 5.2E-05 35.9 2.5 46 77-122 250-299 (327)
129 TIGR01562 FdhE formate dehydro 75.2 0.97 2.1E-05 38.1 0.1 44 76-119 184-233 (305)
130 KOG3799 Rab3 effector RIM1 and 74.9 1.9 4.1E-05 32.1 1.6 56 72-131 61-128 (169)
131 KOG2113 Predicted RNA binding 72.7 4.1 8.9E-05 34.5 3.2 46 74-121 341-387 (394)
132 KOG3842 Adaptor protein Pellin 72.1 5.6 0.00012 33.8 3.8 47 75-121 340-414 (429)
133 KOG4718 Non-SMC (structural ma 71.8 1.7 3.6E-05 34.7 0.7 44 75-118 180-224 (235)
134 PF07191 zinc-ribbons_6: zinc- 71.5 0.39 8.5E-06 31.6 -2.4 43 77-124 2-44 (70)
135 PF13240 zinc_ribbon_2: zinc-r 70.5 1.4 3E-05 22.5 0.0 22 98-119 1-22 (23)
136 smart00647 IBR In Between Ring 70.0 1.2 2.6E-05 27.7 -0.4 19 89-107 41-59 (64)
137 PF04710 Pellino: Pellino; In 67.5 1.8 3.8E-05 37.7 0.0 46 76-121 328-401 (416)
138 PF10497 zf-4CXXC_R1: Zinc-fin 66.8 7.2 0.00016 27.6 3.0 24 95-118 37-69 (105)
139 COG2835 Uncharacterized conser 66.3 1.2 2.7E-05 28.3 -0.9 39 112-164 10-48 (60)
140 COG5109 Uncharacterized conser 65.4 3.6 7.7E-05 34.9 1.4 41 77-117 337-383 (396)
141 PF14446 Prok-RING_1: Prokaryo 65.1 6.1 0.00013 24.7 2.1 29 77-105 6-38 (54)
142 PF01363 FYVE: FYVE zinc finge 64.6 1.7 3.7E-05 27.8 -0.5 32 75-106 8-43 (69)
143 KOG3113 Uncharacterized conser 64.5 3.7 8E-05 33.7 1.3 44 76-121 111-158 (293)
144 PLN02195 cellulose synthase A 64.5 7.1 0.00015 37.8 3.3 45 77-121 7-59 (977)
145 KOG0824 Predicted E3 ubiquitin 64.4 2 4.4E-05 36.0 -0.2 48 75-122 104-152 (324)
146 PF04423 Rad50_zn_hook: Rad50 64.3 2.7 5.8E-05 25.8 0.4 12 110-121 20-31 (54)
147 PF09723 Zn-ribbon_8: Zinc rib 61.1 3.2 6.9E-05 24.2 0.3 30 92-122 9-39 (42)
148 PF06906 DUF1272: Protein of u 60.5 6.6 0.00014 24.7 1.6 41 78-121 7-52 (57)
149 KOG1829 Uncharacterized conser 60.3 3.7 8.1E-05 37.5 0.7 21 93-116 536-556 (580)
150 smart00064 FYVE Protein presen 60.2 9 0.0002 24.3 2.4 31 76-106 10-44 (68)
151 COG3813 Uncharacterized protei 59.9 5.5 0.00012 26.4 1.3 26 94-121 27-52 (84)
152 cd00065 FYVE FYVE domain; Zinc 59.8 7.6 0.00016 23.6 1.9 30 77-106 3-36 (57)
153 PRK04023 DNA polymerase II lar 58.3 8.8 0.00019 37.4 2.8 45 75-121 625-674 (1121)
154 PF05605 zf-Di19: Drought indu 57.7 6.7 0.00015 24.0 1.4 37 76-119 2-40 (54)
155 PF10146 zf-C4H2: Zinc finger- 57.7 7.1 0.00015 31.6 1.8 26 99-124 197-222 (230)
156 PF06844 DUF1244: Protein of u 56.6 5.6 0.00012 25.8 0.9 11 97-107 11-21 (68)
157 PF07975 C1_4: TFIIH C1-like d 56.1 11 0.00023 23.2 2.0 28 90-117 23-50 (51)
158 smart00132 LIM Zinc-binding do 55.7 7.5 0.00016 21.1 1.3 34 79-120 2-37 (39)
159 PF13901 DUF4206: Domain of un 55.6 9.7 0.00021 30.0 2.3 37 76-117 152-196 (202)
160 KOG4451 Uncharacterized conser 55.0 7.5 0.00016 31.5 1.5 25 98-122 251-275 (286)
161 TIGR00622 ssl1 transcription f 55.0 14 0.0003 26.6 2.7 41 77-117 56-110 (112)
162 PF01485 IBR: IBR domain; Int 54.3 2.9 6.2E-05 25.9 -0.8 17 91-107 43-59 (64)
163 PF04710 Pellino: Pellino; In 54.3 4.2 9.1E-05 35.4 0.0 31 89-122 304-340 (416)
164 PF09297 zf-NADH-PPase: NADH p 53.6 3.9 8.5E-05 22.3 -0.2 24 95-118 2-29 (32)
165 KOG1609 Protein involved in mR 50.6 10 0.00022 31.2 1.7 46 76-121 78-134 (323)
166 KOG1356 Putative transcription 50.5 5.6 0.00012 37.8 0.2 46 76-121 229-282 (889)
167 KOG0801 Predicted E3 ubiquitin 50.0 5.9 0.00013 30.4 0.2 27 74-100 175-204 (205)
168 KOG4185 Predicted E3 ubiquitin 48.9 2.1 4.7E-05 35.3 -2.5 44 76-119 207-265 (296)
169 PF11023 DUF2614: Protein of u 48.6 7.3 0.00016 28.0 0.5 17 105-121 80-96 (114)
170 KOG0802 E3 ubiquitin ligase [P 46.2 8.6 0.00019 34.8 0.7 43 75-121 478-520 (543)
171 KOG2789 Putative Zn-finger pro 46.0 15 0.00032 32.2 2.0 31 75-106 73-106 (482)
172 TIGR00622 ssl1 transcription f 44.8 12 0.00025 27.0 1.0 20 143-162 26-45 (112)
173 PRK11827 hypothetical protein; 44.6 3.5 7.5E-05 26.3 -1.5 11 112-122 10-20 (60)
174 PF10083 DUF2321: Uncharacteri 44.2 7.8 0.00017 29.5 0.1 24 95-121 27-50 (158)
175 KOG2066 Vacuolar assembly/sort 43.8 6.6 0.00014 37.1 -0.4 40 76-116 784-830 (846)
176 TIGR02605 CxxC_CxxC_SSSS putat 42.8 16 0.00034 21.9 1.3 30 92-123 9-40 (52)
177 KOG2807 RNA polymerase II tran 42.7 18 0.00039 30.9 2.0 41 77-117 331-374 (378)
178 COG0068 HypF Hydrogenase matur 41.8 17 0.00037 34.1 1.9 48 73-120 98-183 (750)
179 PF13248 zf-ribbon_3: zinc-rib 40.9 9.6 0.00021 19.7 0.1 9 110-118 16-24 (26)
180 KOG4218 Nuclear hormone recept 40.6 8.4 0.00018 33.2 -0.2 14 75-88 14-27 (475)
181 PF00628 PHD: PHD-finger; Int 39.2 9.9 0.00021 22.5 -0.0 40 79-118 2-50 (51)
182 COG4647 AcxC Acetone carboxyla 39.1 14 0.00031 27.3 0.8 23 79-101 60-82 (165)
183 PF11682 DUF3279: Protein of u 37.9 30 0.00064 25.5 2.3 56 112-167 30-98 (128)
184 PF14311 DUF4379: Domain of un 36.1 25 0.00053 21.5 1.4 9 108-116 47-55 (55)
185 COG4357 Zinc finger domain con 35.9 23 0.0005 24.8 1.4 12 111-122 81-92 (105)
186 smart00834 CxxC_CXXC_SSSS Puta 34.8 17 0.00037 20.4 0.5 13 110-122 26-38 (41)
187 smart00249 PHD PHD zinc finger 33.9 28 0.0006 19.4 1.4 27 79-105 2-31 (47)
188 PF06937 EURL: EURL protein; 33.9 23 0.00049 29.4 1.3 42 77-120 31-78 (285)
189 cd00350 rubredoxin_like Rubred 33.6 27 0.00057 19.1 1.2 10 110-119 17-26 (33)
190 KOG0956 PHD finger protein AF1 33.4 24 0.00053 33.1 1.5 50 75-124 116-185 (900)
191 KOG2113 Predicted RNA binding 33.3 12 0.00025 31.9 -0.5 47 75-121 135-183 (394)
192 COG2816 NPY1 NTP pyrophosphohy 33.3 16 0.00034 30.5 0.3 27 94-120 109-139 (279)
193 KOG1815 Predicted E3 ubiquitin 32.5 20 0.00043 31.7 0.8 18 89-106 179-196 (444)
194 PRK14714 DNA polymerase II lar 31.9 28 0.0006 34.9 1.7 45 77-121 668-720 (1337)
195 PF06676 DUF1178: Protein of u 31.8 19 0.0004 27.2 0.4 23 94-121 10-43 (148)
196 PF12660 zf-TFIIIC: Putative z 31.8 8.3 0.00018 26.9 -1.4 44 77-121 15-66 (99)
197 PF05502 Dynactin_p62: Dynacti 31.5 22 0.00048 31.9 0.9 32 75-106 25-62 (483)
198 PRK11595 DNA utilization prote 30.7 50 0.0011 26.2 2.8 37 78-119 7-43 (227)
199 TIGR00373 conserved hypothetic 30.7 12 0.00026 28.3 -0.7 14 109-122 127-140 (158)
200 PF07503 zf-HYPF: HypF finger; 30.6 44 0.00095 18.8 1.7 20 98-117 1-28 (35)
201 PF14169 YdjO: Cold-inducible 28.8 31 0.00068 21.9 1.0 13 109-121 38-50 (59)
202 cd03036 ArsC_like Arsenate Red 28.5 28 0.0006 24.4 0.8 15 110-124 6-20 (111)
203 COG3492 Uncharacterized protei 28.1 23 0.00049 24.6 0.3 11 97-107 42-52 (104)
204 PF10764 Gin: Inhibitor of sig 27.2 50 0.0011 19.7 1.7 30 78-108 1-30 (46)
205 PRK06266 transcription initiat 26.3 19 0.00041 27.9 -0.4 15 108-122 134-148 (178)
206 PF15616 TerY-C: TerY-C metal 25.9 41 0.00088 24.9 1.3 44 73-122 74-117 (131)
207 PF00462 Glutaredoxin: Glutare 25.9 6.2 0.00013 24.1 -2.6 17 110-126 6-22 (60)
208 PF00412 LIM: LIM domain; Int 25.3 18 0.0004 21.7 -0.5 35 79-121 1-37 (58)
209 COG4306 Uncharacterized protei 24.5 30 0.00064 25.5 0.4 22 97-121 29-50 (160)
210 KOG2979 Protein involved in DN 24.4 43 0.00093 27.6 1.3 43 77-119 177-222 (262)
211 PRK14559 putative protein seri 24.3 41 0.00088 31.4 1.3 44 78-121 3-52 (645)
212 PF10235 Cript: Microtubule-as 23.9 46 0.001 23.0 1.2 36 76-120 44-79 (90)
213 smart00734 ZnF_Rad18 Rad18-lik 23.7 37 0.0008 17.6 0.6 10 112-121 3-12 (26)
214 COG3058 FdhE Uncharacterized p 23.7 80 0.0017 26.5 2.8 46 74-119 183-234 (308)
215 PF14369 zf-RING_3: zinc-finge 23.4 28 0.0006 19.5 0.0 24 97-120 3-31 (35)
216 PLN02248 cellulose synthase-li 22.9 51 0.0011 32.7 1.7 29 93-121 149-177 (1135)
217 PTZ00303 phosphatidylinositol 22.8 57 0.0012 31.5 1.9 30 77-106 461-499 (1374)
218 PRK02935 hypothetical protein; 21.4 38 0.00081 24.1 0.4 17 105-121 81-97 (110)
219 PF13717 zinc_ribbon_4: zinc-r 21.2 43 0.00093 18.7 0.6 8 78-85 4-11 (36)
220 COG2093 DNA-directed RNA polym 21.0 44 0.00095 21.5 0.6 22 98-119 6-27 (64)
221 TIGR00100 hypA hydrogenase nic 21.0 37 0.00079 24.2 0.3 24 98-121 72-97 (115)
222 PF13832 zf-HC5HC2H_2: PHD-zin 20.4 95 0.0021 21.4 2.3 32 75-106 54-88 (110)
223 PF13719 zinc_ribbon_5: zinc-r 20.4 45 0.00097 18.7 0.5 8 112-119 27-34 (37)
224 cd02977 ArsC_family Arsenate R 20.2 46 0.001 22.8 0.7 15 110-124 6-20 (105)
225 KOG3005 GIY-YIG type nuclease 20.2 41 0.0009 27.9 0.5 45 77-121 183-243 (276)
226 KOG1814 Predicted E3 ubiquitin 20.2 31 0.00067 30.4 -0.3 33 74-106 366-404 (445)
No 1
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.38 E-value=2.3e-13 Score=109.56 Aligned_cols=56 Identities=32% Similarity=0.894 Sum_probs=47.9
Q ss_pred CCCCcceecccCCCC--------ccccCCCCccchhhHHhhcCCCCCCcccccccccccCCCce
Q 030551 74 EREDECGICLEPCTK--------MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLW 129 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~--------~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~~~~~~~~ 129 (175)
..+.+|+||++.+.. +++++|+|.||..||.+|+..+.+||+||.++..+.++..|
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~~ 235 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKSRFF 235 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEeeeeee
Confidence 345899999998654 36778999999999999999889999999999987777655
No 2
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=9.8e-13 Score=107.08 Aligned_cols=49 Identities=29% Similarity=0.815 Sum_probs=45.1
Q ss_pred CCCCCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
.+....|.+|++...++..++|||.||+.||..|...+..||+||.++.
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ 284 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQ 284 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCC
Confidence 3455899999999999999999999999999999999899999999886
No 3
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.31 E-value=1.6e-12 Score=101.19 Aligned_cols=51 Identities=27% Similarity=0.806 Sum_probs=43.4
Q ss_pred CCCCCCcceecccCCCCccccCCCCccchhhHHhhcC----------------CCCCCccccccccc
Q 030551 72 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT----------------KSESCPFCRGSMKR 122 (175)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~----------------~~~~CP~CR~~i~~ 122 (175)
+..++.+|+||++.+.++++++|||.||+.||.+|+. ....||+||.++..
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 3445689999999999999999999999999999953 12489999999973
No 4
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.30 E-value=1.7e-13 Score=82.70 Aligned_cols=41 Identities=44% Similarity=1.009 Sum_probs=34.4
Q ss_pred CcceecccCCC---CccccCCCCccchhhHHhhcCCCCCCcccc
Q 030551 77 DECGICLEPCT---KMVLPNCCHAMCIKCYRNWNTKSESCPFCR 117 (175)
Q Consensus 77 ~~C~IC~~~~~---~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR 117 (175)
++|+||++.+. ..+.++|||.||.+|+.+|+..+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 37999999884 366667999999999999998888999997
No 5
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.27 E-value=9.8e-13 Score=81.49 Aligned_cols=47 Identities=32% Similarity=0.834 Sum_probs=41.3
Q ss_pred CCcceecccCCCCccccCCCCc-cchhhHHhhcCCCCCCccccccccc
Q 030551 76 EDECGICLEPCTKMVLPNCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~C~H~-fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
+..|.||++...+.++.+|||. ||..|+.+|......||+||+++..
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 4689999999999889899999 9999999998888899999999864
No 6
>PHA02926 zinc finger-like protein; Provisional
Probab=99.26 E-value=2.5e-12 Score=101.47 Aligned_cols=57 Identities=32% Similarity=0.893 Sum_probs=46.2
Q ss_pred CCCCCcceecccCCC---------CccccCCCCccchhhHHhhcCCC------CCCcccccccccccCCCce
Q 030551 73 LEREDECGICLEPCT---------KMVLPNCCHAMCIKCYRNWNTKS------ESCPFCRGSMKRVNSEDLW 129 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~---------~~~~~~C~H~fc~~Ci~~w~~~~------~~CP~CR~~i~~~~~~~~~ 129 (175)
.+.+.+|+||++... .+++++|+|.||..||..|...+ ..||+||..+..+.++..+
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf~ 238 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKFY 238 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccce
Confidence 345689999998742 26888999999999999997542 3699999999988877655
No 7
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.7e-12 Score=108.23 Aligned_cols=98 Identities=35% Similarity=0.650 Sum_probs=83.6
Q ss_pred CCCCcceecccCCCC--------ccccCCCCccchhhHHhhc--CC-----CCCCcccccccccccCCCceeecCCCCCC
Q 030551 74 EREDECGICLEPCTK--------MVLPNCCHAMCIKCYRNWN--TK-----SESCPFCRGSMKRVNSEDLWVLTCTDDVI 138 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~--------~~~~~C~H~fc~~Ci~~w~--~~-----~~~CP~CR~~i~~~~~~~~~~~~~~~~~~ 138 (175)
..+.+|.|||+.... +++++|.|.||..||+.|. .+ .+.||.||.+...++++..|+.....+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~Wv~t~~~k~~ 238 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFWVETKEEKQK 238 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccceeeeecccccc
Confidence 557899999997664 4568899999999999996 33 46899999999999999999999999999
Q ss_pred CCcccChHHHHHHHHHhhhCCCCCchhHHHHHH
Q 030551 139 DPETVSKEDLLRFYLYINSLPKDYPDALFVVYY 171 (175)
Q Consensus 139 d~~~~~~e~l~r~~~~i~~lp~~~~~~~~~~~~ 171 (175)
+.++...+...+...|++..+.--|..=...|+
T Consensus 239 li~e~~~~~s~~~c~yf~~~~g~cPf~s~~~y~ 271 (344)
T KOG1039|consen 239 LIEEYEAEMSAKDCKYFSQGLGSCPFGSKCFYK 271 (344)
T ss_pred cHHHHHHHhhccchhhhcCCCCCCCCCCccccc
Confidence 999888899999999999988888875444443
No 8
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=4.8e-12 Score=100.31 Aligned_cols=49 Identities=29% Similarity=0.731 Sum_probs=43.0
Q ss_pred CCCCCcceecccCCCCccccCCCCccchhhHHhhcCC---CCCCcccccccc
Q 030551 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK---SESCPFCRGSMK 121 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~---~~~CP~CR~~i~ 121 (175)
......|.||++..++++++.|||.||+-||.+|+.. ++.||+|++.++
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 3456899999999999999999999999999999653 447999999886
No 9
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=9e-12 Score=95.11 Aligned_cols=49 Identities=29% Similarity=0.762 Sum_probs=43.2
Q ss_pred CCCCcceecccCCCC--ccccCCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 74 EREDECGICLEPCTK--MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~--~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
+....|+|||+.+.. ++.++|||.||..||..-+.....||+||+.|+.
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 344899999999887 6679999999999999999988999999998764
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.17 E-value=6.1e-12 Score=73.97 Aligned_cols=38 Identities=34% Similarity=0.952 Sum_probs=33.2
Q ss_pred ceecccCCCCc-cccCCCCccchhhHHhhcCCCCCCccc
Q 030551 79 CGICLEPCTKM-VLPNCCHAMCIKCYRNWNTKSESCPFC 116 (175)
Q Consensus 79 C~IC~~~~~~~-~~~~C~H~fc~~Ci~~w~~~~~~CP~C 116 (175)
|+||++.+.++ +.++|||.||.+|+.+|++.+..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999997 688999999999999998878899988
No 11
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.13 E-value=2e-11 Score=81.58 Aligned_cols=42 Identities=36% Similarity=1.013 Sum_probs=34.9
Q ss_pred CCcceecccCCCC-------------ccccCCCCccchhhHHhhcCCCCCCcccc
Q 030551 76 EDECGICLEPCTK-------------MVLPNCCHAMCIKCYRNWNTKSESCPFCR 117 (175)
Q Consensus 76 ~~~C~IC~~~~~~-------------~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR 117 (175)
++.|+||++.+.+ ....+|||.||..||.+|+..+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 3459999998832 45567999999999999999999999997
No 12
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.12 E-value=2.6e-11 Score=72.55 Aligned_cols=38 Identities=34% Similarity=0.766 Sum_probs=29.2
Q ss_pred ceecccCCCCccccCCCCccchhhHHhhcCCC----CCCccc
Q 030551 79 CGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS----ESCPFC 116 (175)
Q Consensus 79 C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~----~~CP~C 116 (175)
|+||++.+.+++.++|||+||..||..|.... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999998885432 369987
No 13
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3.7e-10 Score=95.01 Aligned_cols=49 Identities=24% Similarity=0.744 Sum_probs=41.4
Q ss_pred CCCCCcceecccCCC-C------------ccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 73 LEREDECGICLEPCT-K------------MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~-~------------~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
...+..|.|||+.+. . +...+|||.+|.+|++.|.+++++||.||.++-
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 346689999998732 1 466679999999999999999999999999964
No 14
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=7.5e-10 Score=93.29 Aligned_cols=46 Identities=33% Similarity=0.907 Sum_probs=38.4
Q ss_pred CcceecccCCCC---ccccCCCCccchhhHHhhcCCCC-CCccccccccc
Q 030551 77 DECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTKSE-SCPFCRGSMKR 122 (175)
Q Consensus 77 ~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w~~~~~-~CP~CR~~i~~ 122 (175)
..|+||+|.+.. ....||+|.||..||.+|+.... .||+|++.+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 599999999886 34455999999999999987665 59999987753
No 15
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.01 E-value=2.1e-10 Score=73.77 Aligned_cols=45 Identities=16% Similarity=0.199 Sum_probs=41.7
Q ss_pred CcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 77 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..|+||.+.+.+++.++|||.||..||.+|+..+..||.|+.+++
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 579999999999999999999999999999877889999999875
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.00 E-value=2e-10 Score=68.08 Aligned_cols=43 Identities=40% Similarity=1.028 Sum_probs=35.7
Q ss_pred cceecccCCCC-ccccCCCCccchhhHHhhcCC-CCCCccccccc
Q 030551 78 ECGICLEPCTK-MVLPNCCHAMCIKCYRNWNTK-SESCPFCRGSM 120 (175)
Q Consensus 78 ~C~IC~~~~~~-~~~~~C~H~fc~~Ci~~w~~~-~~~CP~CR~~i 120 (175)
.|+||++.+.. ..+++|||.||..|+..|... ...||.||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 49999999854 555569999999999999876 66899998763
No 17
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.96 E-value=3.6e-10 Score=97.14 Aligned_cols=51 Identities=29% Similarity=0.696 Sum_probs=45.3
Q ss_pred CCCCCCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 72 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
..+....|+||++.+..+++++|||.||..|+..|+.....||.||.++..
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 345668999999999999999999999999999998877789999998763
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.95 E-value=2.2e-10 Score=67.78 Aligned_cols=38 Identities=47% Similarity=1.137 Sum_probs=33.9
Q ss_pred ceecccCCCCcc-ccCCCCccchhhHHhhcC--CCCCCccc
Q 030551 79 CGICLEPCTKMV-LPNCCHAMCIKCYRNWNT--KSESCPFC 116 (175)
Q Consensus 79 C~IC~~~~~~~~-~~~C~H~fc~~Ci~~w~~--~~~~CP~C 116 (175)
|+||++.+..+. +++|||.||..|+.+|+. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 789999999977 888999999999999976 55689988
No 19
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.93 E-value=5.5e-10 Score=76.04 Aligned_cols=48 Identities=33% Similarity=0.856 Sum_probs=38.0
Q ss_pred CCCcceecccCCCC-------------ccccCCCCccchhhHHhhcCC---CCCCccccccccc
Q 030551 75 REDECGICLEPCTK-------------MVLPNCCHAMCIKCYRNWNTK---SESCPFCRGSMKR 122 (175)
Q Consensus 75 ~~~~C~IC~~~~~~-------------~~~~~C~H~fc~~Ci~~w~~~---~~~CP~CR~~i~~ 122 (175)
.++.|+||...|.. .+...|+|.||..||.+|++. +..||+||++...
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 36789998877652 455679999999999999764 4589999998753
No 20
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.90 E-value=9e-10 Score=66.38 Aligned_cols=41 Identities=39% Similarity=0.960 Sum_probs=35.2
Q ss_pred cceecccCCC---CccccCCCCccchhhHHhhcCCCCCCccccc
Q 030551 78 ECGICLEPCT---KMVLPNCCHAMCIKCYRNWNTKSESCPFCRG 118 (175)
Q Consensus 78 ~C~IC~~~~~---~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~ 118 (175)
.|+||++.+. .+.+++|||.||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4899999883 3888899999999999998866679999985
No 21
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.90 E-value=4e-10 Score=93.82 Aligned_cols=49 Identities=27% Similarity=0.686 Sum_probs=45.0
Q ss_pred CCCCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 74 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
.....|.||.+.|..+++++|+|.||.-||+.++..+..||.|+.++..
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 3447899999999999999999999999999999999999999998863
No 22
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.88 E-value=5.6e-10 Score=91.27 Aligned_cols=50 Identities=26% Similarity=0.509 Sum_probs=45.8
Q ss_pred CCCCCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
......|-||-+.+..++.++|||.||.-||+.++..+..||+||.+...
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 44557999999999999999999999999999999999999999998864
No 23
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.2e-09 Score=95.16 Aligned_cols=47 Identities=36% Similarity=0.783 Sum_probs=40.7
Q ss_pred CCcceecccCCCCccccCCCCccchhhHHhhcCC-----CCCCccccccccc
Q 030551 76 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK-----SESCPFCRGSMKR 122 (175)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~-----~~~CP~CR~~i~~ 122 (175)
+..||||+++...++.+.|||.||..||.+++.. -..||+||..|..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 6899999999999999999999999999776433 2489999999875
No 24
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.82 E-value=2e-09 Score=61.58 Aligned_cols=38 Identities=39% Similarity=1.047 Sum_probs=33.5
Q ss_pred ceecccCCCCccccCCCCccchhhHHhhcC-CCCCCccc
Q 030551 79 CGICLEPCTKMVLPNCCHAMCIKCYRNWNT-KSESCPFC 116 (175)
Q Consensus 79 C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~-~~~~CP~C 116 (175)
|+||++....++.++|||.||..|+..|.. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999988888888999999999999976 55679987
No 25
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.1e-09 Score=86.77 Aligned_cols=48 Identities=29% Similarity=0.706 Sum_probs=42.1
Q ss_pred CCCCcceecccCCCCccccCCCCccchhhHHh-hcCCCC-CCcccccccc
Q 030551 74 EREDECGICLEPCTKMVLPNCCHAMCIKCYRN-WNTKSE-SCPFCRGSMK 121 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~-w~~~~~-~CP~CR~~i~ 121 (175)
..+..|.||++....+..++|||.||..||.. |-.++. .||+||+...
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 45789999999999999999999999999988 966555 5999999875
No 26
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2.4e-09 Score=88.05 Aligned_cols=46 Identities=30% Similarity=0.767 Sum_probs=39.2
Q ss_pred CCcceecccCCCC---ccccCCCCccchhhHHhhcC-CCCCCcccccccc
Q 030551 76 EDECGICLEPCTK---MVLPNCCHAMCIKCYRNWNT-KSESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w~~-~~~~CP~CR~~i~ 121 (175)
..+|+|||+.+.. .+.+||.|.||..|+.+|+. .+..||+||.++.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 3789999998865 55667999999999999975 6669999999875
No 27
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.61 E-value=1.1e-08 Score=89.66 Aligned_cols=105 Identities=19% Similarity=0.458 Sum_probs=78.0
Q ss_pred eEE-eecCCCCcccchhhhhHHHHHHhhhhHHHHHHHhhcchhhHHHHHhhhhcccccccccccCCCCCCCCCCcceecc
Q 030551 5 FLH-VSADDRPSLTSPGRKATIREFYGVILPSLQRLHSNLRELDDAKIENLEIGSFDRMRGDSQVGSADLEREDECGICL 83 (175)
Q Consensus 5 ~y~-~~~~g~~~~~~~~~~~si~~f~~~i~~~l~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~ 83 (175)
+|. +|.|.+..+.++-..+.+.++|+.||..+.+++.....-+ .-.+.++ ..-..+......|.+|.
T Consensus 476 ~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~------LVl~S~~------~n~~~enk~~~~C~lc~ 543 (791)
T KOG1002|consen 476 LYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPD------LVLYSAN------ANLPDENKGEVECGLCH 543 (791)
T ss_pred HHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcc------eeeehhh------cCCCccccCceeecccC
Confidence 344 8999999999999999999999999999988864433222 0011111 11122334457899999
Q ss_pred cCCCCccccCCCCccchhhHHhhcC-----CCCCCcccccccc
Q 030551 84 EPCTKMVLPNCCHAMCIKCYRNWNT-----KSESCPFCRGSMK 121 (175)
Q Consensus 84 ~~~~~~~~~~C~H~fc~~Ci~~w~~-----~~~~CP~CR~~i~ 121 (175)
++..+.+.+.|.|.||.-|+.++.. .+-+||.|-..+.
T Consensus 544 d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 544 DPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred ChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 9999999999999999999988843 2358999987765
No 28
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.7e-08 Score=62.74 Aligned_cols=47 Identities=38% Similarity=0.791 Sum_probs=39.7
Q ss_pred CCcceecccCCCCccccCCCC-ccchhhHHh-hcCCCCCCccccccccc
Q 030551 76 EDECGICLEPCTKMVLPNCCH-AMCIKCYRN-WNTKSESCPFCRGSMKR 122 (175)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~C~H-~fc~~Ci~~-w~~~~~~CP~CR~~i~~ 122 (175)
..+|.||++...+.++-.||| ..|..|-.+ |...+..||+||+++..
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 378999999999977777999 679999854 66677899999999863
No 29
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.8e-08 Score=90.39 Aligned_cols=48 Identities=29% Similarity=0.668 Sum_probs=41.9
Q ss_pred CCCCCcceecccCCCC-----ccccCCCCccchhhHHhhcCCCCCCccccccc
Q 030551 73 LEREDECGICLEPCTK-----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSM 120 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~-----~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i 120 (175)
...+..|.||++.+.. +...+|+|.||..|+..|.++.++||+||..+
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 3457899999998876 56777999999999999999999999999944
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.54 E-value=2.7e-08 Score=66.31 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=38.9
Q ss_pred CCCcceecccCCCCccccCCCCccchhhHHhhcCC-CCCCccccccccc
Q 030551 75 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK-SESCPFCRGSMKR 122 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~-~~~CP~CR~~i~~ 122 (175)
+.+.|+|+.+.+.+++++++||+|+..||..|+.. ...||+|+.++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 35789999999999999999999999999999887 7799999998863
No 31
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.51 E-value=1.9e-08 Score=60.32 Aligned_cols=35 Identities=34% Similarity=0.832 Sum_probs=20.7
Q ss_pred ceecccCCCC----ccccCCCCccchhhHHhhcCCC----CCCc
Q 030551 79 CGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKS----ESCP 114 (175)
Q Consensus 79 C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w~~~~----~~CP 114 (175)
|+||.+ +.. +++++|||+||.+|+.++...+ -+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 765 7777799999999999996533 2676
No 32
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.45 E-value=8.5e-08 Score=61.79 Aligned_cols=44 Identities=30% Similarity=0.693 Sum_probs=24.7
Q ss_pred CCcceecccCCCCcc-ccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 76 EDECGICLEPCTKMV-LPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~~~~-~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
...|++|.+.+..++ +..|.|.||+.||.+-+. ..||+|+.|..
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence 468999999999976 689999999999988654 35999988863
No 33
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=3.7e-08 Score=89.42 Aligned_cols=48 Identities=23% Similarity=0.659 Sum_probs=41.5
Q ss_pred CCCcceecccCCCCccccCCCCccchhhHHhhc-CCCCCCccccccccc
Q 030551 75 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWN-TKSESCPFCRGSMKR 122 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~-~~~~~CP~CR~~i~~ 122 (175)
....|+.|...+.+.+++.|||.||..|+.+-. .+...||.|.++|..
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 348999999999999999999999999997764 456699999999863
No 34
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.43 E-value=1.9e-07 Score=77.79 Aligned_cols=48 Identities=23% Similarity=0.631 Sum_probs=36.0
Q ss_pred CCcceecccC--CCC---ccccCCCCccchhhHHh-hcCCCCCCcccccccccc
Q 030551 76 EDECGICLEP--CTK---MVLPNCCHAMCIKCYRN-WNTKSESCPFCRGSMKRV 123 (175)
Q Consensus 76 ~~~C~IC~~~--~~~---~~~~~C~H~fc~~Ci~~-w~~~~~~CP~CR~~i~~~ 123 (175)
+..||+|... +.. ..+.+|||.||..|+.. |......||.|+.++...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 3689999984 222 23336999999999988 555566899999998754
No 35
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.39 E-value=1.3e-07 Score=63.27 Aligned_cols=46 Identities=28% Similarity=0.565 Sum_probs=36.5
Q ss_pred CcceecccCCCC----------------ccccCCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 77 DECGICLEPCTK----------------MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 77 ~~C~IC~~~~~~----------------~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
+.|+||...+.+ .+-..|.|.||..||.+|+..+..||++|+++..
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 577777755432 3334599999999999999999999999998753
No 36
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.3e-07 Score=76.23 Aligned_cols=46 Identities=39% Similarity=0.725 Sum_probs=39.9
Q ss_pred CCCCCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCccccc
Q 030551 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRG 118 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~ 118 (175)
..+...|+||++.+..+.+.+|||.||..|+..+......||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 3456899999999999988889999999999887765568999993
No 37
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=4.7e-07 Score=73.58 Aligned_cols=55 Identities=22% Similarity=0.667 Sum_probs=41.2
Q ss_pred CCCcceecccCCCC----------ccccCCCCccchhhHHhh--cCCCCCCcccccccc-cccCCCce
Q 030551 75 REDECGICLEPCTK----------MVLPNCCHAMCIKCYRNW--NTKSESCPFCRGSMK-RVNSEDLW 129 (175)
Q Consensus 75 ~~~~C~IC~~~~~~----------~~~~~C~H~fc~~Ci~~w--~~~~~~CP~CR~~i~-~~~~~~~~ 129 (175)
++..|++|-..+.. .-...|+|.||..||+.| +.+.++||.|+..+. ...+++.|
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsnpW 290 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPW 290 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccCcc
Confidence 45789999876543 334569999999999999 577789999998875 23344444
No 38
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.5e-07 Score=62.42 Aligned_cols=46 Identities=33% Similarity=0.870 Sum_probs=35.6
Q ss_pred CCcceecccCCCC-------------ccccCCCCccchhhHHhhcCC---CCCCcccccccc
Q 030551 76 EDECGICLEPCTK-------------MVLPNCCHAMCIKCYRNWNTK---SESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~~-------------~~~~~C~H~fc~~Ci~~w~~~---~~~CP~CR~~i~ 121 (175)
+.+|.||.-+|.. .+...|.|.||..||.+|+.. +..||+||+.+.
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3489998877642 445569999999999999643 348999999875
No 39
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3.9e-07 Score=76.58 Aligned_cols=49 Identities=31% Similarity=0.805 Sum_probs=42.9
Q ss_pred CCCCcceecccCCCCccccCCCC-ccchhhHHhhcCCCCCCccccccccc
Q 030551 74 EREDECGICLEPCTKMVLPNCCH-AMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~C~H-~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
+...+|.||+...++.++.||.| ..|..|.....-+...||+||+++..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 44689999999999988888999 67999999887677799999999973
No 40
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=6.9e-07 Score=77.87 Aligned_cols=49 Identities=29% Similarity=0.819 Sum_probs=39.9
Q ss_pred CCCCCcceecccCCC-----------------CccccCCCCccchhhHHhhcCCCC-CCcccccccc
Q 030551 73 LEREDECGICLEPCT-----------------KMVLPNCCHAMCIKCYRNWNTKSE-SCPFCRGSMK 121 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~-----------------~~~~~~C~H~fc~~Ci~~w~~~~~-~CP~CR~~i~ 121 (175)
.+....|+|||.+.. .-.++||.|.||..|+.+|...-+ .||.||+++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 345688999998753 145678999999999999988544 8999999985
No 41
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.14 E-value=8e-07 Score=75.80 Aligned_cols=48 Identities=31% Similarity=0.906 Sum_probs=41.4
Q ss_pred CcceecccCCCCccccCCCCccchhhHHhhcC--CCCCCccccccccccc
Q 030551 77 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNT--KSESCPFCRGSMKRVN 124 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~--~~~~CP~CR~~i~~~~ 124 (175)
..|.||.+.-++..+-+|||..|..|+..|.. .++.||+||..|+...
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 57999999999988888999999999999963 3679999999998443
No 42
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.9e-06 Score=74.39 Aligned_cols=50 Identities=26% Similarity=0.708 Sum_probs=45.0
Q ss_pred CCCCCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
...+..|.||+..+..++.++|||.||..|+.+-+.....||.||.++..
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 35678999999999999999999999999999988888899999998863
No 43
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.9e-06 Score=71.08 Aligned_cols=46 Identities=26% Similarity=0.614 Sum_probs=39.0
Q ss_pred CCcceecccCCCCccccCCCCccchhhHHhhcCC-CCCCcccccccc
Q 030551 76 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK-SESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~-~~~CP~CR~~i~ 121 (175)
..+|+||+....-++.+.|+|.||.-||..-... ...|++||.+|+
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pid 53 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPID 53 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCC
Confidence 4689999999888899999999999999764333 346999999997
No 44
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.95 E-value=5.8e-06 Score=71.57 Aligned_cols=49 Identities=27% Similarity=0.667 Sum_probs=44.3
Q ss_pred CCCCCcceecccCCCCcccc-CCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 73 LEREDECGICLEPCTKMVLP-NCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~-~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
...+..|++|+..+.+++.+ .|||.||..|+..|...+..||.|+..+.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT 67 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccc
Confidence 45668999999999998884 89999999999999988899999988875
No 45
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.95 E-value=4.5e-06 Score=72.07 Aligned_cols=49 Identities=29% Similarity=0.677 Sum_probs=38.4
Q ss_pred CCCCCCCcceecccCCCC----ccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 71 ADLEREDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 71 ~~~~~~~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
....+..+|++|++.+.. .+.+.|.|+||..|+.+|-. .+||+||.-..
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 344566899999998865 34557999999999999964 48999986543
No 46
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.90 E-value=5.3e-06 Score=77.21 Aligned_cols=50 Identities=22% Similarity=0.674 Sum_probs=38.2
Q ss_pred CCCCCcceecccCCC-------CccccCCCCccchhhHHhhc--CCCCCCccccccccc
Q 030551 73 LEREDECGICLEPCT-------KMVLPNCCHAMCIKCYRNWN--TKSESCPFCRGSMKR 122 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~-------~~~~~~C~H~fc~~Ci~~w~--~~~~~CP~CR~~i~~ 122 (175)
.+.-.+|+||..... ....+.|.|.||..|+-+|. +.+..||+||..++.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 345578999986433 24445699999999999994 456699999998864
No 47
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.89 E-value=1.6e-06 Score=57.31 Aligned_cols=46 Identities=33% Similarity=0.842 Sum_probs=22.6
Q ss_pred CCcceecccCCC-C-----cccc--CCCCccchhhHHhhcCC---C--------CCCcccccccc
Q 030551 76 EDECGICLEPCT-K-----MVLP--NCCHAMCIKCYRNWNTK---S--------ESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~-~-----~~~~--~C~H~fc~~Ci~~w~~~---~--------~~CP~CR~~i~ 121 (175)
+..|+||+.... . .+-. .|++.||..|+.+|+.. . ..||.|+++|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 368999998754 2 2332 69999999999999421 1 16999999986
No 48
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.82 E-value=8.1e-06 Score=63.81 Aligned_cols=46 Identities=26% Similarity=0.580 Sum_probs=40.0
Q ss_pred CCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 76 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
.+.|.||-..+..++.+.|||.||..|...-......|-+|-+...
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence 3699999999999999999999999999776667779999977654
No 49
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=1.1e-06 Score=73.73 Aligned_cols=48 Identities=29% Similarity=0.702 Sum_probs=39.0
Q ss_pred CCCCcceecccCCCC-ccccCCCCccchhhHHhh-cCCCCCCcccccccc
Q 030551 74 EREDECGICLEPCTK-MVLPNCCHAMCIKCYRNW-NTKSESCPFCRGSMK 121 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~-~~~~~C~H~fc~~Ci~~w-~~~~~~CP~CR~~i~ 121 (175)
..+..|+||++.+.. .....|+|.||.+||..- ...+..||.||+.+.
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 345789999998886 555579999999999665 456679999999886
No 50
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=2.7e-05 Score=65.76 Aligned_cols=50 Identities=22% Similarity=0.576 Sum_probs=44.8
Q ss_pred CCCCCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
..++..|+||.......+.+||+|.-|+.||.+.+-+.+.|-+|+..+..
T Consensus 419 ~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred CcccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 35678999999998889999999999999999999899999999988763
No 51
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=9.5e-05 Score=60.44 Aligned_cols=52 Identities=29% Similarity=0.594 Sum_probs=39.3
Q ss_pred CCCCCCCCcceecccCCCCcccc-CCCCccchhhHHhhcC--CCCCCcccccccc
Q 030551 70 SADLEREDECGICLEPCTKMVLP-NCCHAMCIKCYRNWNT--KSESCPFCRGSMK 121 (175)
Q Consensus 70 ~~~~~~~~~C~IC~~~~~~~~~~-~C~H~fc~~Ci~~w~~--~~~~CP~CR~~i~ 121 (175)
......+.+|++|-+....|... +|||.||..|+..-.. .+.+||.|-.+..
T Consensus 233 ss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 233 SSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 33455678999999988775444 5999999999966433 3459999988765
No 52
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.3e-05 Score=65.99 Aligned_cols=45 Identities=27% Similarity=0.504 Sum_probs=41.1
Q ss_pred CcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 77 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
+.|-||..++..++.+.|+|.||..|...-......|++|.+.+.
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccCCcceecccccc
Confidence 679999999999999999999999999887777889999988765
No 53
>PHA03096 p28-like protein; Provisional
Probab=97.64 E-value=8.6e-06 Score=67.54 Aligned_cols=57 Identities=26% Similarity=0.436 Sum_probs=40.3
Q ss_pred CcceecccCCC--------CccccCCCCccchhhHHhhcCCC---C---CCcccccccccc----------cCCCceeec
Q 030551 77 DECGICLEPCT--------KMVLPNCCHAMCIKCYRNWNTKS---E---SCPFCRGSMKRV----------NSEDLWVLT 132 (175)
Q Consensus 77 ~~C~IC~~~~~--------~~~~~~C~H~fc~~Ci~~w~~~~---~---~CP~CR~~i~~~----------~~~~~~~~~ 132 (175)
..|.||++... ...++.|.|.||..|+..|...+ . .||.|+..+..+ .|+..|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~~~v~~~~~~~~~~ips~~w~~~ 258 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVIVFIEKINEDLKNNIPSRYWIDD 258 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHHHHHhhcchhhhccCCchhhhcC
Confidence 57999998654 27888999999999999995432 2 455555555444 666666544
Q ss_pred C
Q 030551 133 C 133 (175)
Q Consensus 133 ~ 133 (175)
.
T Consensus 259 ~ 259 (284)
T PHA03096 259 K 259 (284)
T ss_pred h
Confidence 3
No 54
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.60 E-value=2.7e-05 Score=47.88 Aligned_cols=40 Identities=20% Similarity=0.691 Sum_probs=30.1
Q ss_pred cceeccc--CCCCccccCCC-----CccchhhHHhhcCC--CCCCcccc
Q 030551 78 ECGICLE--PCTKMVLPNCC-----HAMCIKCYRNWNTK--SESCPFCR 117 (175)
Q Consensus 78 ~C~IC~~--~~~~~~~~~C~-----H~fc~~Ci~~w~~~--~~~CP~CR 117 (175)
.|.||++ ....+...||. |.+|..|+.+|+.. +.+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 22336667785 88999999999744 44899994
No 55
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=2.4e-05 Score=54.91 Aligned_cols=46 Identities=24% Similarity=0.590 Sum_probs=35.9
Q ss_pred CCcceecccCCCC-----------------ccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 76 EDECGICLEPCTK-----------------MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~~-----------------~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
.+.|+||..-+.+ ..-..|.|.||..||.+|+..+..||+|.++..
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 3789999743221 333459999999999999999999999987754
No 56
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.57 E-value=1.2e-05 Score=73.57 Aligned_cols=51 Identities=25% Similarity=0.713 Sum_probs=39.4
Q ss_pred CcceecccCCCC---ccccCCCCccchhhHHhhcCCCCCCcccccccccccCCC
Q 030551 77 DECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSED 127 (175)
Q Consensus 77 ~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~~~~~~ 127 (175)
..|++|+..+.+ ....+|+|.||..|+..|....++||+||..+..+.+.+
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~e 177 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVLE 177 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeeeec
Confidence 567777665544 333459999999999999988899999999998665443
No 57
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=2.5e-05 Score=66.52 Aligned_cols=44 Identities=25% Similarity=0.736 Sum_probs=32.1
Q ss_pred CcceecccCCCC----ccccCCCCccchhhHHhhcCCC---CCCccccccc
Q 030551 77 DECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKS---ESCPFCRGSM 120 (175)
Q Consensus 77 ~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w~~~~---~~CP~CR~~i 120 (175)
-.|.||.+-+.. ..+..|||.||..|+.+|.... ..||.||-.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 479999554432 3333499999999999997653 3799999443
No 58
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.52 E-value=1.4e-05 Score=66.63 Aligned_cols=49 Identities=20% Similarity=0.572 Sum_probs=42.0
Q ss_pred CCCCcceecccCCCC-ccccCCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 74 EREDECGICLEPCTK-MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~-~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
..-.+|.+|-..+.+ ..++.|-|+||.+||.+++.....||.|...+..
T Consensus 13 n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHK 62 (331)
T ss_pred ccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence 445789999999998 5566799999999999998888999999887763
No 59
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.50 E-value=4.4e-05 Score=48.47 Aligned_cols=41 Identities=24% Similarity=0.488 Sum_probs=28.7
Q ss_pred CCCcceecccCCCCcccc-CCCCccchhhHHhhcCC--CCCCcc
Q 030551 75 REDECGICLEPCTKMVLP-NCCHAMCIKCYRNWNTK--SESCPF 115 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~-~C~H~fc~~Ci~~w~~~--~~~CP~ 115 (175)
....|+|.+..+.+|+.. .|||.|..+.|.+|+.+ ...||.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 447999999999998775 89999999999999843 347998
No 60
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=7.9e-05 Score=63.92 Aligned_cols=46 Identities=33% Similarity=0.808 Sum_probs=36.6
Q ss_pred CCcceecccCCCC-----ccccCCCCccchhhHHhhcCC--CCCCcccccccc
Q 030551 76 EDECGICLEPCTK-----MVLPNCCHAMCIKCYRNWNTK--SESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~~-----~~~~~C~H~fc~~Ci~~w~~~--~~~CP~CR~~i~ 121 (175)
..+|+||++.+.. .+.+.|||.|-.+||++|+.+ ...||.|...-.
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence 4689999997653 667789999999999999853 237999976544
No 61
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=2.3e-05 Score=64.55 Aligned_cols=43 Identities=33% Similarity=0.839 Sum_probs=36.2
Q ss_pred CCcceecccCCCCccccCCCCc-cchhhHHhhcCCCCCCccccccccc
Q 030551 76 EDECGICLEPCTKMVLPNCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~C~H~-fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
...|.|||+...+-++.+|||. -|.+|-.. -..||+||+.+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR----MNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc----cccCchHHHHHHH
Confidence 6789999999999888889994 59999754 3389999998764
No 62
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.23 E-value=4.4e-05 Score=70.16 Aligned_cols=112 Identities=21% Similarity=0.425 Sum_probs=69.0
Q ss_pred eecCCCCcccchhhhhHHHHHHhhhhHHHHHHHhhcchhh--HHHHHhhhhcccccccccccCCCCCCCCCCcceecccC
Q 030551 8 VSADDRPSLTSPGRKATIREFYGVILPSLQRLHSNLRELD--DAKIENLEIGSFDRMRGDSQVGSADLEREDECGICLEP 85 (175)
Q Consensus 8 ~~~~g~~~~~~~~~~~si~~f~~~i~~~l~~l~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~ 85 (175)
+..+++.++..+...+++...|+.++-.+.++...-.+.. ..+.....-............. +......|.||++
T Consensus 386 l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~--~l~~~~~c~ic~~- 462 (674)
T KOG1001|consen 386 LKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIV--DLSVSHWCHICCD- 462 (674)
T ss_pred HhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccchHHHHHHH--HHhhccccccccc-
Confidence 5667778888888888888889988888877754333322 1110000000000000000000 0111178999999
Q ss_pred CCCccccCCCCccchhhHHhhcCC--CCCCccccccccc
Q 030551 86 CTKMVLPNCCHAMCIKCYRNWNTK--SESCPFCRGSMKR 122 (175)
Q Consensus 86 ~~~~~~~~C~H~fc~~Ci~~w~~~--~~~CP~CR~~i~~ 122 (175)
....+.+.|||.||.+|+.+.... ...||.||..+..
T Consensus 463 ~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 463 LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 666888899999999999887433 3379999988863
No 63
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.02 E-value=0.00028 Score=56.72 Aligned_cols=44 Identities=25% Similarity=0.823 Sum_probs=31.1
Q ss_pred cceecccCCC--CccccCCCCccchhhHHhhcCCCCCCcccccccccc
Q 030551 78 ECGICLEPCT--KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRV 123 (175)
Q Consensus 78 ~C~IC~~~~~--~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~~ 123 (175)
.|.-|.-... .-.++.|+|.||..|... .....||+|++++..+
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~--~~~~~C~lCkk~ir~i 50 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKA--SSPDVCPLCKKSIRII 50 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhccc--CCccccccccceeeee
Confidence 4666654332 266788999999999854 2333999999997643
No 64
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.95 E-value=0.00065 Score=41.46 Aligned_cols=42 Identities=26% Similarity=0.661 Sum_probs=20.9
Q ss_pred ceecccCCCC--cccc--CCCCccchhhHHhhcC-CCCCCccccccc
Q 030551 79 CGICLEPCTK--MVLP--NCCHAMCIKCYRNWNT-KSESCPFCRGSM 120 (175)
Q Consensus 79 C~IC~~~~~~--~~~~--~C~H~fc~~Ci~~w~~-~~~~CP~CR~~i 120 (175)
|++|.+.+.. ..+. +||+..|..|....+. ....||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 6788887632 2222 5899999999988875 477999999874
No 65
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.93 E-value=0.00057 Score=57.79 Aligned_cols=55 Identities=25% Similarity=0.517 Sum_probs=45.1
Q ss_pred CCCCCCCCCcceecccCCCCccccCCCCccchhhHHhh--cCCCCCCcccccccccc
Q 030551 69 GSADLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNW--NTKSESCPFCRGSMKRV 123 (175)
Q Consensus 69 ~~~~~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w--~~~~~~CP~CR~~i~~~ 123 (175)
.+...++...|-||.+......++||+|..|--|..+. +...+.||+||.....+
T Consensus 54 addtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 54 ADDTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred ccccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceE
Confidence 44456677899999999988888889999999999665 56678999999887643
No 66
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0012 Score=55.83 Aligned_cols=47 Identities=30% Similarity=0.728 Sum_probs=35.5
Q ss_pred CCCCCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
......|.||.+...+.+..+|||.-| |..- .++-.+||+||..+..
T Consensus 302 ~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~c-s~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLC-SKHLPQCPVCRQRIRL 348 (355)
T ss_pred cCCCCceEEecCCccceeeecCCcEEE--chHH-HhhCCCCchhHHHHHH
Confidence 455689999999999988888999765 5533 2334469999998763
No 67
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=96.70 E-value=0.00089 Score=56.04 Aligned_cols=45 Identities=27% Similarity=0.677 Sum_probs=38.1
Q ss_pred CCCCCcceecccCCCCccccCC--CCccchhhHHhhcCCCCCCcccccccc
Q 030551 73 LEREDECGICLEPCTKMVLPNC--CHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~C--~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..+-.+||||.+.+..++.. | ||..|..|-.+ ....||.||.+++
T Consensus 45 ~~~lleCPvC~~~l~~Pi~Q-C~nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQ-CDNGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCccccee-cCCCcEehhhhhhh---hcccCCccccccc
Confidence 34558999999999998887 8 89999999864 4558999999987
No 68
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0012 Score=54.78 Aligned_cols=44 Identities=34% Similarity=0.786 Sum_probs=35.7
Q ss_pred CcceecccCCCC------ccccCCCCccchhhHHhhcCCCC-CCccccccc
Q 030551 77 DECGICLEPCTK------MVLPNCCHAMCIKCYRNWNTKSE-SCPFCRGSM 120 (175)
Q Consensus 77 ~~C~IC~~~~~~------~~~~~C~H~fc~~Ci~~w~~~~~-~CP~CR~~i 120 (175)
..|.||-+.++. |..+.|||.+|..|+.+...... .||+||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 579999988764 55566999999999998865544 799999985
No 69
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.40 E-value=0.00073 Score=65.90 Aligned_cols=48 Identities=25% Similarity=0.695 Sum_probs=36.0
Q ss_pred CCCCcceecccCCC---CccccCCCCccchhhHHhhcCCCC----------CCcccccccc
Q 030551 74 EREDECGICLEPCT---KMVLPNCCHAMCIKCYRNWNTKSE----------SCPFCRGSMK 121 (175)
Q Consensus 74 ~~~~~C~IC~~~~~---~~~~~~C~H~fc~~Ci~~w~~~~~----------~CP~CR~~i~ 121 (175)
..++.|-||+..-- ..+...|+|.||..|.+..+++.. +||+|..++.
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 45689999986432 256677999999999966544322 8999998886
No 70
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.34 E-value=0.0024 Score=44.69 Aligned_cols=33 Identities=21% Similarity=0.623 Sum_probs=25.7
Q ss_pred CCCCCCcceecccCCCC--ccccCCCCccchhhHH
Q 030551 72 DLEREDECGICLEPCTK--MVLPNCCHAMCIKCYR 104 (175)
Q Consensus 72 ~~~~~~~C~IC~~~~~~--~~~~~C~H~fc~~Ci~ 104 (175)
....+..|++|-..+.. .+.-||||.||..|+.
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 34556789999998876 4445699999999975
No 71
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.0025 Score=51.66 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=42.2
Q ss_pred CCCcceecccCCCC----ccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 75 REDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 75 ~~~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
....|++|.+.+.+ .++.+|||.||.+|+.+.+.....||+|-.+++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence 45789999998876 778899999999999999988899999988886
No 72
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.30 E-value=0.0027 Score=39.75 Aligned_cols=43 Identities=28% Similarity=0.680 Sum_probs=33.6
Q ss_pred CcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 77 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..|-.|...-...++.+|||..|..|..-+ +-.-||+|..++.
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~ 50 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFE 50 (55)
T ss_pred eeEEEccccccccccccccceeeccccChh--hccCCCCCCCccc
Confidence 567778777667777779999999997654 3448999988875
No 73
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.08 E-value=0.0026 Score=52.87 Aligned_cols=42 Identities=21% Similarity=0.494 Sum_probs=35.0
Q ss_pred CcceecccCCCCcccc-CCCCccchhhHHhh-cCCCCCCccccc
Q 030551 77 DECGICLEPCTKMVLP-NCCHAMCIKCYRNW-NTKSESCPFCRG 118 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~-~C~H~fc~~Ci~~w-~~~~~~CP~CR~ 118 (175)
..|+.|......++.+ -|+|.||.+||..- +.....||.|-.
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 7899999998887776 68999999999754 556679999954
No 74
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=96.05 E-value=0.0018 Score=53.82 Aligned_cols=45 Identities=31% Similarity=0.731 Sum_probs=34.7
Q ss_pred CcceecccCCCC---ccccCCCCccchhhHHhhcC------------------C-----CCCCcccccccc
Q 030551 77 DECGICLEPCTK---MVLPNCCHAMCIKCYRNWNT------------------K-----SESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w~~------------------~-----~~~CP~CR~~i~ 121 (175)
..|.||+--|.+ .+.++|-|-||..|+.+++. + ...||+||..|.
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 579999876654 56778999999999977632 1 117999999987
No 75
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=95.86 E-value=0.0056 Score=46.43 Aligned_cols=31 Identities=26% Similarity=0.552 Sum_probs=22.8
Q ss_pred CCcceecccCCCCccccCC------------CCcc-chhhHHhh
Q 030551 76 EDECGICLEPCTKMVLPNC------------CHAM-CIKCYRNW 106 (175)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~C------------~H~f-c~~Ci~~w 106 (175)
+..|+|||+-.-+.|++-| +..+ |..|+.++
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqf 45 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQF 45 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHH
Confidence 4689999999888777654 3333 67888877
No 76
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=95.83 E-value=0.0083 Score=51.38 Aligned_cols=51 Identities=22% Similarity=0.601 Sum_probs=32.5
Q ss_pred CCCCCcceecccCCCCc-----------------cccCCC-----CccchhhHHhhcCC-------------CCCCcccc
Q 030551 73 LEREDECGICLEPCTKM-----------------VLPNCC-----HAMCIKCYRNWNTK-------------SESCPFCR 117 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~-----------------~~~~C~-----H~fc~~Ci~~w~~~-------------~~~CP~CR 117 (175)
.++.+.|--|+....+. ..++|. -.+|.+|+.+|... +-.||+||
T Consensus 268 ~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCR 347 (358)
T PF10272_consen 268 GQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCR 347 (358)
T ss_pred ccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCc
Confidence 34557788888754431 112343 34589999999321 22899999
Q ss_pred cccccc
Q 030551 118 GSMKRV 123 (175)
Q Consensus 118 ~~i~~~ 123 (175)
+++.-.
T Consensus 348 a~FCil 353 (358)
T PF10272_consen 348 AKFCIL 353 (358)
T ss_pred ccceee
Confidence 998743
No 77
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.78 E-value=0.0091 Score=48.96 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=39.0
Q ss_pred CCCCCcceecccCCCC----ccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 73 LEREDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
......|||....+.. ..+-+|||+|+..++.+.. ....||+|-.++.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccc
Confidence 3455899999988754 6666799999999999874 4568999999987
No 78
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=0.0032 Score=58.59 Aligned_cols=42 Identities=24% Similarity=0.556 Sum_probs=33.2
Q ss_pred CCcceecccCCCC-ccccCCCCccchhhHHhhcCCCCCCccccccc
Q 030551 76 EDECGICLEPCTK-MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSM 120 (175)
Q Consensus 76 ~~~C~IC~~~~~~-~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i 120 (175)
...|.+|-..+.- .|.-.|||.||.+|.. .....||.|+...
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 3689999888776 3444799999999997 4566999998744
No 79
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.67 E-value=0.0026 Score=54.64 Aligned_cols=47 Identities=30% Similarity=0.629 Sum_probs=34.4
Q ss_pred CCCCcceecccCCCC----ccccCCCCccchhhHHhhcCC--CCCCccccccc
Q 030551 74 EREDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTK--SESCPFCRGSM 120 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w~~~--~~~CP~CR~~i 120 (175)
+-...|..|-+.+-- ..-.||.|.||..|+..++.+ ..+||.||+-.
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 345789999876532 333459999999999988654 34899999433
No 80
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.0059 Score=51.29 Aligned_cols=46 Identities=20% Similarity=0.453 Sum_probs=37.0
Q ss_pred CCCCcceecccCCCC-ccccCCCCccchhhHHhhcCCCCCCcccccc
Q 030551 74 EREDECGICLEPCTK-MVLPNCCHAMCIKCYRNWNTKSESCPFCRGS 119 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~-~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~ 119 (175)
.+...|++|+....+ .++.--|..||..|+-.++...+.||+=..+
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence 455899999988766 4455569999999999999888999975444
No 81
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.61 E-value=0.0098 Score=50.35 Aligned_cols=45 Identities=31% Similarity=0.745 Sum_probs=33.0
Q ss_pred CcceecccCCCC----ccccCCCCccchhhHHhhcC-CCCCCcccccccc
Q 030551 77 DECGICLEPCTK----MVLPNCCHAMCIKCYRNWNT-KSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w~~-~~~~CP~CR~~i~ 121 (175)
+-|+.|++++.. -.--+||...|.-|.....+ -+..||-||...+
T Consensus 15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred ccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 459999998754 22235899889999866533 3569999998776
No 82
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.39 E-value=0.02 Score=43.49 Aligned_cols=47 Identities=23% Similarity=0.595 Sum_probs=34.2
Q ss_pred CCCCcceecccCCCCccccCCCC-----ccchhhHHhhcCC--CCCCcccccccc
Q 030551 74 EREDECGICLEPCTKMVLPNCCH-----AMCIKCYRNWNTK--SESCPFCRGSMK 121 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~C~H-----~fc~~Ci~~w~~~--~~~CP~CR~~i~ 121 (175)
..+..|-||.+.... ...||.- ..|.+|+.+|+.. ...|+.|+.+..
T Consensus 6 ~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 445789999988654 2345644 3399999999654 458999998876
No 83
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.0086 Score=51.74 Aligned_cols=32 Identities=25% Similarity=0.721 Sum_probs=26.8
Q ss_pred CCCcceecccCCCC---ccccCCCCccchhhHHhh
Q 030551 75 REDECGICLEPCTK---MVLPNCCHAMCIKCYRNW 106 (175)
Q Consensus 75 ~~~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w 106 (175)
....|.||++.... ...++|+|.||..|...+
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY 217 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDY 217 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHH
Confidence 34789999987654 667789999999999887
No 84
>PHA02862 5L protein; Provisional
Probab=95.12 E-value=0.016 Score=43.28 Aligned_cols=44 Identities=27% Similarity=0.690 Sum_probs=33.1
Q ss_pred CcceecccCCCCccccCCCC-----ccchhhHHhhcCC--CCCCcccccccc
Q 030551 77 DECGICLEPCTKMVLPNCCH-----AMCIKCYRNWNTK--SESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~~C~H-----~fc~~Ci~~w~~~--~~~CP~CR~~i~ 121 (175)
..|-||.+.-.+.. .||.- .-|.+|+.+|+.. ...||+|+.+..
T Consensus 3 diCWIC~~~~~e~~-~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDERN-NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCCc-ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 57999998865543 45644 3599999999754 448999998875
No 85
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.012 Score=49.19 Aligned_cols=45 Identities=27% Similarity=0.726 Sum_probs=31.6
Q ss_pred CcceecccCCCC-ccccCCCCccchhhHHhhcCCCCCCcccccccccc
Q 030551 77 DECGICLEPCTK-MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRV 123 (175)
Q Consensus 77 ~~C~IC~~~~~~-~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~~ 123 (175)
..|.-|--.+.. ..+.+|.|.||.+|.+- ...+.||.|-..+.++
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQRI 136 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhc--CccccCcCcccHHHHH
Confidence 456677655544 55556999999999854 3356899997766543
No 86
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.024 Score=43.92 Aligned_cols=48 Identities=21% Similarity=0.616 Sum_probs=32.2
Q ss_pred CcceecccCCCCccc-------cCCCCccchhhHHhhcCC----CC-------CCccccccccccc
Q 030551 77 DECGICLEPCTKMVL-------PNCCHAMCIKCYRNWNTK----SE-------SCPFCRGSMKRVN 124 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~-------~~C~H~fc~~Ci~~w~~~----~~-------~CP~CR~~i~~~~ 124 (175)
..|.||...--+... ..||..||.-|+..|+.. ++ .||.|-.++.-..
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm 231 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM 231 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence 456666643322222 259999999999999531 11 7999999887443
No 87
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.51 E-value=0.022 Score=53.40 Aligned_cols=34 Identities=26% Similarity=0.525 Sum_probs=26.0
Q ss_pred CCCCCcceecccCCCC--ccccCCCCccchhhHHhh
Q 030551 73 LEREDECGICLEPCTK--MVLPNCCHAMCIKCYRNW 106 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~--~~~~~C~H~fc~~Ci~~w 106 (175)
.+....|.+|..++.. -.+-+|||.||.+|+.+-
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHH
Confidence 3455789999987654 444569999999999665
No 88
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.029 Score=45.00 Aligned_cols=47 Identities=21% Similarity=0.540 Sum_probs=35.4
Q ss_pred CCCcceecccCCCC--ccccCCCCccchhhHHhhcCC--------CCCCcccccccc
Q 030551 75 REDECGICLEPCTK--MVLPNCCHAMCIKCYRNWNTK--------SESCPFCRGSMK 121 (175)
Q Consensus 75 ~~~~C~IC~~~~~~--~~~~~C~H~fc~~Ci~~w~~~--------~~~CP~CR~~i~ 121 (175)
....|..|-..+.. .+...|-|.||++|+..|... ...||-|..+|-
T Consensus 49 Y~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 34679999877654 555669999999999999422 238999988763
No 89
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.035 Score=45.97 Aligned_cols=45 Identities=20% Similarity=0.597 Sum_probs=32.3
Q ss_pred cceecccCCC-C----ccccCCCCccchhhHHhhcCC-CCCCccccccccc
Q 030551 78 ECGICLEPCT-K----MVLPNCCHAMCIKCYRNWNTK-SESCPFCRGSMKR 122 (175)
Q Consensus 78 ~C~IC~~~~~-~----~~~~~C~H~fc~~Ci~~w~~~-~~~CP~CR~~i~~ 122 (175)
.|+.|-.... . ..+.+|+|..|.+|....... ...||-|-..+-.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 5888875422 1 334479999999999887544 4589999776653
No 90
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.024 Score=45.09 Aligned_cols=40 Identities=30% Similarity=0.717 Sum_probs=32.7
Q ss_pred cceecccCCCCccccCCCC-ccchhhHHhhcCCCCCCcccccccc
Q 030551 78 ECGICLEPCTKMVLPNCCH-AMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 78 ~C~IC~~~~~~~~~~~C~H-~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
.|-.|.+.-....+.||.| .+|..|-.. -..||+|+.+..
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred cceecCcCCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 3999999888888889999 679999743 347999988764
No 91
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=93.80 E-value=0.036 Score=51.83 Aligned_cols=47 Identities=30% Similarity=0.745 Sum_probs=34.7
Q ss_pred CCCcceecccCCCC--c--cccCCCCccchhhHHhhcC-------CCCCCcccccccc
Q 030551 75 REDECGICLEPCTK--M--VLPNCCHAMCIKCYRNWNT-------KSESCPFCRGSMK 121 (175)
Q Consensus 75 ~~~~C~IC~~~~~~--~--~~~~C~H~fc~~Ci~~w~~-------~~~~CP~CR~~i~ 121 (175)
...+|.||.+.+.. + .-..|-|.||..||.+|-. ....||.|+....
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 44799999998775 2 2235899999999999932 2338999985443
No 92
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.23 E-value=0.013 Score=56.90 Aligned_cols=46 Identities=28% Similarity=0.686 Sum_probs=39.2
Q ss_pred CCCcceecccCCC-CccccCCCCccchhhHHhhcCCCCCCccccccc
Q 030551 75 REDECGICLEPCT-KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSM 120 (175)
Q Consensus 75 ~~~~C~IC~~~~~-~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i 120 (175)
....|.||.+... ......|||.+|..|...|+..+..||.|....
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 4468999999887 456666999999999999999999999998543
No 93
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=93.19 E-value=0.073 Score=31.61 Aligned_cols=38 Identities=24% Similarity=0.620 Sum_probs=20.4
Q ss_pred ceecccCCCCcccc---CCCCccchhhHHhhcCCCC--CCccc
Q 030551 79 CGICLEPCTKMVLP---NCCHAMCIKCYRNWNTKSE--SCPFC 116 (175)
Q Consensus 79 C~IC~~~~~~~~~~---~C~H~fc~~Ci~~w~~~~~--~CP~C 116 (175)
|.+|.+.....+.= .|+=.+|..|+..+..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 56677766553222 4888999999999866544 79987
No 94
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.83 E-value=0.083 Score=39.01 Aligned_cols=48 Identities=35% Similarity=0.838 Sum_probs=36.0
Q ss_pred CCCcceecccCCCC-ccccC---CCCccchhhHHh-h--cCCCCCCccccccccc
Q 030551 75 REDECGICLEPCTK-MVLPN---CCHAMCIKCYRN-W--NTKSESCPFCRGSMKR 122 (175)
Q Consensus 75 ~~~~C~IC~~~~~~-~~~~~---C~H~fc~~Ci~~-w--~~~~~~CP~CR~~i~~ 122 (175)
.-.+|.||.+...+ ..+.| ||...|.-|... | -.....||.|+..++.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 44899999997665 22222 999999999855 6 3456699999998863
No 95
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=92.59 E-value=0.058 Score=47.23 Aligned_cols=35 Identities=29% Similarity=0.614 Sum_probs=30.5
Q ss_pred CCCCcceecccCCCCccccCCCCccchhhHHhhcC
Q 030551 74 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT 108 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~ 108 (175)
+++..|+||..-+.++++.+|+|..|..|....+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 45689999999999999999999999999987643
No 96
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=92.25 E-value=0.053 Score=43.97 Aligned_cols=47 Identities=23% Similarity=0.704 Sum_probs=33.9
Q ss_pred CCCcceecccCCC---C---ccccCCCCccchhhHHhhcCCCC-CCc--ccccccc
Q 030551 75 REDECGICLEPCT---K---MVLPNCCHAMCIKCYRNWNTKSE-SCP--FCRGSMK 121 (175)
Q Consensus 75 ~~~~C~IC~~~~~---~---~~~~~C~H~fc~~Ci~~w~~~~~-~CP--~CR~~i~ 121 (175)
.+..||+|....- + .+-|.|-|.+|.+|..+..+..+ .|| -|.+-+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 3468999986422 1 34445999999999999876655 799 7866554
No 97
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=92.07 E-value=0.17 Score=33.92 Aligned_cols=52 Identities=23% Similarity=0.608 Sum_probs=20.9
Q ss_pred CCCcceecccCCCC-------ccccCCCCccchhhHHh-hcCCCCCCcccccccccccCC
Q 030551 75 REDECGICLEPCTK-------MVLPNCCHAMCIKCYRN-WNTKSESCPFCRGSMKRVNSE 126 (175)
Q Consensus 75 ~~~~C~IC~~~~~~-------~~~~~C~H~fc~~Ci~~-w~~~~~~CP~CR~~i~~~~~~ 126 (175)
....|.||-+..-. .....|+-..|..|..- ....++.||.|+...+....+
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgs 67 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGS 67 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT-
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCC
Confidence 34679999886542 33445787889999843 456778999999888754433
No 98
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=91.80 E-value=0.057 Score=32.69 Aligned_cols=38 Identities=26% Similarity=0.726 Sum_probs=22.9
Q ss_pred ceecccCCCC--ccccCCCC-----ccchhhHHhhcC--CCCCCccc
Q 030551 79 CGICLEPCTK--MVLPNCCH-----AMCIKCYRNWNT--KSESCPFC 116 (175)
Q Consensus 79 C~IC~~~~~~--~~~~~C~H-----~fc~~Ci~~w~~--~~~~CP~C 116 (175)
|-||++.... +.+.||+- ..|.+|+.+|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 5678776443 45666743 359999999965 44578887
No 99
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.69 E-value=0.07 Score=43.57 Aligned_cols=56 Identities=23% Similarity=0.406 Sum_probs=39.5
Q ss_pred CCCCcceecccCCCC----ccccCC-----CCccchhhHHhhcCCCC--------CCcccccccccccCCCce
Q 030551 74 EREDECGICLEPCTK----MVLPNC-----CHAMCIKCYRNWNTKSE--------SCPFCRGSMKRVNSEDLW 129 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~----~~~~~C-----~H~fc~~Ci~~w~~~~~--------~CP~CR~~i~~~~~~~~~ 129 (175)
+.+.-|-||+..-++ ..+.|| .|..|..|+..|...+. .||.|+.....+.|.-.|
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l~~ 90 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQLGP 90 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccccCh
Confidence 445789999987665 244457 35679999999954322 799999887766555544
No 100
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=91.55 E-value=0.096 Score=43.37 Aligned_cols=42 Identities=26% Similarity=0.574 Sum_probs=34.3
Q ss_pred CcceecccCCCC----ccccCCCCccchhhHHhhcCCCCCCccccc
Q 030551 77 DECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCRG 118 (175)
Q Consensus 77 ~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~ 118 (175)
..|+||.+.+.. +...+|||..|..|.......+-.||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 459999886543 666679999999999998666689999987
No 101
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.38 E-value=0.097 Score=45.40 Aligned_cols=34 Identities=29% Similarity=0.773 Sum_probs=25.0
Q ss_pred CCCcceecc-cCCCC---ccccCCCCccchhhHHhhcC
Q 030551 75 REDECGICL-EPCTK---MVLPNCCHAMCIKCYRNWNT 108 (175)
Q Consensus 75 ~~~~C~IC~-~~~~~---~~~~~C~H~fc~~Ci~~w~~ 108 (175)
...+|.||+ +.... .....|+|.||.+|..+..+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 457899999 43322 22456999999999998854
No 102
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.80 E-value=0.14 Score=44.18 Aligned_cols=42 Identities=17% Similarity=0.405 Sum_probs=32.0
Q ss_pred CcceecccCCCC---ccccCCCCccchhhHHhhcCCC---CCCccccc
Q 030551 77 DECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTKS---ESCPFCRG 118 (175)
Q Consensus 77 ~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w~~~~---~~CP~CR~ 118 (175)
+.|||=.+.-.+ |....|||..+.+-+.+...+. .+||.|-.
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 789987665443 6777799999999999985443 48999943
No 103
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.30 E-value=0.1 Score=43.45 Aligned_cols=30 Identities=27% Similarity=0.555 Sum_probs=22.5
Q ss_pred CCCccchhhHHhhcC-------------CCCCCcccccccccc
Q 030551 94 CCHAMCIKCYRNWNT-------------KSESCPFCRGSMKRV 123 (175)
Q Consensus 94 C~H~fc~~Ci~~w~~-------------~~~~CP~CR~~i~~~ 123 (175)
|...+|.+|+.+|.. ++-.||+||+.+.-.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 566779999999832 223899999998743
No 104
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=90.23 E-value=0.067 Score=49.23 Aligned_cols=45 Identities=27% Similarity=0.639 Sum_probs=37.1
Q ss_pred CcceecccCCCCccccCCCCccchhhHHhh---cCCCCCCcccccccc
Q 030551 77 DECGICLEPCTKMVLPNCCHAMCIKCYRNW---NTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w---~~~~~~CP~CR~~i~ 121 (175)
.+|+||......++.+.|-|.||..|+... ......||+|+..+.
T Consensus 22 lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 22 LECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred ccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 589999999999988899999999999553 333458999997775
No 105
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=89.96 E-value=0.084 Score=39.08 Aligned_cols=32 Identities=25% Similarity=0.703 Sum_probs=23.6
Q ss_pred CCcceecccCCCC---ccccCCC------CccchhhHHhhc
Q 030551 76 EDECGICLEPCTK---MVLPNCC------HAMCIKCYRNWN 107 (175)
Q Consensus 76 ~~~C~IC~~~~~~---~~~~~C~------H~fc~~Ci~~w~ 107 (175)
..+|.||++.+.. .+..+|| |.||.+|+.+|.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 3689999998765 2222364 679999999994
No 106
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.05 E-value=0.19 Score=46.78 Aligned_cols=39 Identities=23% Similarity=0.552 Sum_probs=28.7
Q ss_pred CcceecccCCCC--ccccCCCCccchhhHHhhcCCCCCCcc
Q 030551 77 DECGICLEPCTK--MVLPNCCHAMCIKCYRNWNTKSESCPF 115 (175)
Q Consensus 77 ~~C~IC~~~~~~--~~~~~C~H~fc~~Ci~~w~~~~~~CP~ 115 (175)
..|.||.-.... .+...|+|..|.+|...|......||.
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeeEeeEeeccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 445555443332 445569999999999999998889985
No 107
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=88.84 E-value=0.66 Score=45.02 Aligned_cols=55 Identities=25% Similarity=0.600 Sum_probs=39.5
Q ss_pred CCCcceecccCCCC-------ccccCCCCccchhhHH-hhcCCCCCCcccccccccccCCCce
Q 030551 75 REDECGICLEPCTK-------MVLPNCCHAMCIKCYR-NWNTKSESCPFCRGSMKRVNSEDLW 129 (175)
Q Consensus 75 ~~~~C~IC~~~~~~-------~~~~~C~H~fc~~Ci~-~w~~~~~~CP~CR~~i~~~~~~~~~ 129 (175)
....|.||-+.... .....|+-..|..|.+ +..+.++.||.|+...++...+..-
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv 78 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAI 78 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCc
Confidence 44689999987542 4445677779999993 2356778999999998866644433
No 108
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.52 E-value=0.33 Score=39.62 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=30.1
Q ss_pred CCCCcceecccCCCCccccCCCCccchhhHHhhc
Q 030551 74 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWN 107 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~ 107 (175)
..-.-|+.|+.+..++++++=||.||.+||.+++
T Consensus 41 K~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred CCcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 3446799999999999999999999999998873
No 109
>PLN02189 cellulose synthase
Probab=88.28 E-value=0.68 Score=44.76 Aligned_cols=53 Identities=23% Similarity=0.611 Sum_probs=38.5
Q ss_pred CCCcceecccCCCC-------ccccCCCCccchhhHHh-hcCCCCCCcccccccccccCCC
Q 030551 75 REDECGICLEPCTK-------MVLPNCCHAMCIKCYRN-WNTKSESCPFCRGSMKRVNSED 127 (175)
Q Consensus 75 ~~~~C~IC~~~~~~-------~~~~~C~H~fc~~Ci~~-w~~~~~~CP~CR~~i~~~~~~~ 127 (175)
....|.||-+.... .....|+-..|..|.+- ..+.++.||.|++...+.+.+.
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~kgs~ 93 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLKGSP 93 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCC
Confidence 44689999987542 44455888899999933 2556779999999988665443
No 110
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=88.09 E-value=0.31 Score=29.63 Aligned_cols=43 Identities=26% Similarity=0.707 Sum_probs=24.7
Q ss_pred cceecccCCCCccccCC-CCccchhhHHhhcCCCCCCccccccccc
Q 030551 78 ECGICLEPCTKMVLPNC-CHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 78 ~C~IC~~~~~~~~~~~C-~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
.|.-|.-.... +..| .|-.|..|+.-.+..+..||+|..++..
T Consensus 4 nCKsCWf~~k~--Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFANKG--LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S--SS--EEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred cChhhhhcCCC--eeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 45556544332 3346 5777999999999999999999998864
No 111
>PLN02436 cellulose synthase A
Probab=88.04 E-value=0.64 Score=45.05 Aligned_cols=54 Identities=22% Similarity=0.620 Sum_probs=38.5
Q ss_pred CCCCcceecccCCCC-------ccccCCCCccchhhHHh-hcCCCCCCcccccccccccCCC
Q 030551 74 EREDECGICLEPCTK-------MVLPNCCHAMCIKCYRN-WNTKSESCPFCRGSMKRVNSED 127 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~-------~~~~~C~H~fc~~Ci~~-w~~~~~~CP~CR~~i~~~~~~~ 127 (175)
.....|.||-+.... .....|+-..|..|.+- ..+.++.||.|++..++...+.
T Consensus 34 ~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~kgs~ 95 (1094)
T PLN02436 34 LSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSP 95 (1094)
T ss_pred cCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCC
Confidence 344689999987632 44445777799999933 2456779999999988665443
No 112
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.44 E-value=0.41 Score=42.22 Aligned_cols=35 Identities=26% Similarity=0.765 Sum_probs=29.4
Q ss_pred CCCCcceecccCCCC-ccccCCCCccchhhHHhhcC
Q 030551 74 EREDECGICLEPCTK-MVLPNCCHAMCIKCYRNWNT 108 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~-~~~~~C~H~fc~~Ci~~w~~ 108 (175)
.....|.||.+.... .+...|||.||..|+..++.
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence 445799999999875 77778999999999998854
No 113
>PLN02400 cellulose synthase
Probab=86.14 E-value=0.88 Score=44.20 Aligned_cols=54 Identities=20% Similarity=0.576 Sum_probs=38.2
Q ss_pred CCCCcceecccCCCC-------ccccCCCCccchhhHHh-hcCCCCCCcccccccccccCCC
Q 030551 74 EREDECGICLEPCTK-------MVLPNCCHAMCIKCYRN-WNTKSESCPFCRGSMKRVNSED 127 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~-------~~~~~C~H~fc~~Ci~~-w~~~~~~CP~CR~~i~~~~~~~ 127 (175)
.....|.||-+.... .....|+-..|..|.+- ..+.++.||.|+...++...+.
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~Kgsp 95 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHKGSP 95 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccccCCC
Confidence 344689999987542 44445777789999932 2556779999999888655333
No 114
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.06 E-value=0.2 Score=45.86 Aligned_cols=36 Identities=33% Similarity=0.675 Sum_probs=28.0
Q ss_pred CcceecccCCCC----ccccCCCCccchhhHHhhcCCCCCCc
Q 030551 77 DECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCP 114 (175)
Q Consensus 77 ~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w~~~~~~CP 114 (175)
..|.||+..|.. ++.+.|||+.|..|+...- +.+||
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp 51 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP 51 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC
Confidence 679999776543 7777899999999997743 34788
No 115
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=84.98 E-value=0.48 Score=28.99 Aligned_cols=42 Identities=24% Similarity=0.514 Sum_probs=18.7
Q ss_pred CcceecccCCCCcccc-CCCCccchhhHHhh-----cCCCCCCcccccc
Q 030551 77 DECGICLEPCTKMVLP-NCCHAMCIKCYRNW-----NTKSESCPFCRGS 119 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~-~C~H~fc~~Ci~~w-----~~~~~~CP~CR~~ 119 (175)
..|+|....+..++.. .|.|.-|.+=. .| ......||.|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~-~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLE-SFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHH-HHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHH-HHHHHhhccCCeECcCCcCc
Confidence 4688888888774443 69998765542 22 1233489999764
No 116
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.58 E-value=0.08 Score=45.63 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=38.3
Q ss_pred CCcceecccCCCC----ccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 76 EDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
...|+||...+.. .....|||..+..|+.+|+.....||.|+..+.
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 3689999987654 334459999999999999988889999998886
No 117
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.49 E-value=0.47 Score=39.45 Aligned_cols=34 Identities=24% Similarity=0.535 Sum_probs=27.3
Q ss_pred CCCcceecccCCCCccccCC----CCccchhhHHhhcC
Q 030551 75 REDECGICLEPCTKMVLPNC----CHAMCIKCYRNWNT 108 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~C----~H~fc~~Ci~~w~~ 108 (175)
....|.+|.+.+.+.-.-.| .|.||.-|-++-++
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHH
Confidence 34889999999998555556 89999999988754
No 118
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=82.32 E-value=1.1 Score=42.34 Aligned_cols=49 Identities=20% Similarity=0.478 Sum_probs=36.6
Q ss_pred CCCcceecccCCC--CccccCCCCc-----cchhhHHhhcCCC--CCCcccccccccc
Q 030551 75 REDECGICLEPCT--KMVLPNCCHA-----MCIKCYRNWNTKS--ESCPFCRGSMKRV 123 (175)
Q Consensus 75 ~~~~C~IC~~~~~--~~~~~~C~H~-----fc~~Ci~~w~~~~--~~CP~CR~~i~~~ 123 (175)
++..|.||...-. ++...||..+ .|.+|+.+|...+ .+|-.|..++...
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 4478999986433 3777778654 4999999997654 4899999888744
No 119
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.23 E-value=0.67 Score=40.25 Aligned_cols=40 Identities=28% Similarity=0.634 Sum_probs=29.8
Q ss_pred CCcceecccCCCC------ccccCCCCccchhhHHhhcCCCCCCccc
Q 030551 76 EDECGICLEPCTK------MVLPNCCHAMCIKCYRNWNTKSESCPFC 116 (175)
Q Consensus 76 ~~~C~IC~~~~~~------~~~~~C~H~fc~~Ci~~w~~~~~~CP~C 116 (175)
...|+.|.-.+.. ..-. |||.||+.|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 4678888755432 4445 99999999999998877777554
No 120
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=81.17 E-value=2.2 Score=41.44 Aligned_cols=53 Identities=21% Similarity=0.545 Sum_probs=37.9
Q ss_pred CCCcceecccCCCC-------ccccCCCCccchhhHHh-hcCCCCCCcccccccccccCCC
Q 030551 75 REDECGICLEPCTK-------MVLPNCCHAMCIKCYRN-WNTKSESCPFCRGSMKRVNSED 127 (175)
Q Consensus 75 ~~~~C~IC~~~~~~-------~~~~~C~H~fc~~Ci~~-w~~~~~~CP~CR~~i~~~~~~~ 127 (175)
....|.||-+.... .....|+-..|..|..- ..+.++.||.|+....+...+.
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~ 74 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCP 74 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCC
Confidence 44689999987542 44445777799999932 2556779999999888655433
No 121
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=80.11 E-value=0.28 Score=40.70 Aligned_cols=45 Identities=24% Similarity=0.536 Sum_probs=23.5
Q ss_pred CCCCcceecccCCCCccccC-----CCCccchhhHHhhcCCCCCCccccc
Q 030551 74 EREDECGICLEPCTKMVLPN-----CCHAMCIKCYRNWNTKSESCPFCRG 118 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~-----C~H~fc~~Ci~~w~~~~~~CP~CR~ 118 (175)
.....||+|-....-.++.. =.|.+|.-|-..|.-....||.|-.
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 34579999988755422221 3567899999999888889999943
No 122
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=79.29 E-value=1.1 Score=42.28 Aligned_cols=46 Identities=15% Similarity=0.413 Sum_probs=29.9
Q ss_pred CCcceecccCCCC-------ccccCCCCccchhhHHhhcCC------CCCCcccccccc
Q 030551 76 EDECGICLEPCTK-------MVLPNCCHAMCIKCYRNWNTK------SESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~~-------~~~~~C~H~fc~~Ci~~w~~~------~~~CP~CR~~i~ 121 (175)
...|.+|.-.+.+ -.+..|+|.||..||..|..+ .-.|++|..-|.
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 3556655544332 233359999999999999432 226899976664
No 123
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=78.36 E-value=1.4 Score=23.24 Aligned_cols=7 Identities=29% Similarity=0.657 Sum_probs=3.0
Q ss_pred ceecccC
Q 030551 79 CGICLEP 85 (175)
Q Consensus 79 C~IC~~~ 85 (175)
|+-|...
T Consensus 3 CP~C~~~ 9 (26)
T PF10571_consen 3 CPECGAE 9 (26)
T ss_pred CCCCcCC
Confidence 4444443
No 124
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=77.01 E-value=0.23 Score=35.85 Aligned_cols=47 Identities=26% Similarity=0.477 Sum_probs=30.7
Q ss_pred CCCcceecccCCCC-----ccccCCCCccchhhHHhhc-CCCCCCcccccccc
Q 030551 75 REDECGICLEPCTK-----MVLPNCCHAMCIKCYRNWN-TKSESCPFCRGSMK 121 (175)
Q Consensus 75 ~~~~C~IC~~~~~~-----~~~~~C~H~fc~~Ci~~w~-~~~~~CP~CR~~i~ 121 (175)
....|.+|..++.. ..-..|+|.+|..|-..-. .....|.+|...-.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k~re 105 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQKQRE 105 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHHHHH
Confidence 45689999887643 5556799999999975511 12237999976543
No 125
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=76.66 E-value=1 Score=38.00 Aligned_cols=44 Identities=18% Similarity=0.428 Sum_probs=32.4
Q ss_pred CCCcceecccCCCCccc---cCC--CCccchhhHHhhcCCCCCCccccc
Q 030551 75 REDECGICLEPCTKMVL---PNC--CHAMCIKCYRNWNTKSESCPFCRG 118 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~---~~C--~H~fc~~Ci~~w~~~~~~CP~CR~ 118 (175)
....||+|-....-.++ ..= .|.+|.-|-..|.-....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 45899999887543221 123 456799999999888889999965
No 126
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.15 E-value=2.4 Score=39.36 Aligned_cols=44 Identities=27% Similarity=0.670 Sum_probs=35.7
Q ss_pred cceecccCCCCccccCCCC-ccchhhHHhhc--CC----CCCCcccccccc
Q 030551 78 ECGICLEPCTKMVLPNCCH-AMCIKCYRNWN--TK----SESCPFCRGSMK 121 (175)
Q Consensus 78 ~C~IC~~~~~~~~~~~C~H-~fc~~Ci~~w~--~~----~~~CP~CR~~i~ 121 (175)
.|+||-....-.....||| ..|..|..+.. .. ...||.||..+.
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 5999999888888889999 89999997762 22 336899998765
No 127
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=76.07 E-value=1.8 Score=40.48 Aligned_cols=42 Identities=19% Similarity=0.408 Sum_probs=33.3
Q ss_pred CcceecccCCCC--ccccCCCCccchhhHHhhcCCCCCCcc--ccc
Q 030551 77 DECGICLEPCTK--MVLPNCCHAMCIKCYRNWNTKSESCPF--CRG 118 (175)
Q Consensus 77 ~~C~IC~~~~~~--~~~~~C~H~fc~~Ci~~w~~~~~~CP~--CR~ 118 (175)
-.|.+|-..+.. .....|||.-|.+|+.+|......||. |..
T Consensus 780 ~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~ 825 (839)
T KOG0269|consen 780 AKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPH 825 (839)
T ss_pred cCceeecceeeeeEeecccccccccHHHHHHHHhcCCCCccccCCc
Confidence 468888776654 445569999999999999998888987 643
No 128
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=75.58 E-value=2.4 Score=35.93 Aligned_cols=46 Identities=26% Similarity=0.645 Sum_probs=36.7
Q ss_pred CcceecccCCCC----ccccCCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 77 DECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 77 ~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
..|+||-+.... .+-.+|++..|..|...-......||.||++...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 789999987632 3333689999999998888888899999987753
No 129
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=75.21 E-value=0.97 Score=38.08 Aligned_cols=44 Identities=20% Similarity=0.494 Sum_probs=32.3
Q ss_pred CCcceecccCCCCcccc----CC--CCccchhhHHhhcCCCCCCcccccc
Q 030551 76 EDECGICLEPCTKMVLP----NC--CHAMCIKCYRNWNTKSESCPFCRGS 119 (175)
Q Consensus 76 ~~~C~IC~~~~~~~~~~----~C--~H~fc~~Ci~~w~~~~~~CP~CR~~ 119 (175)
...||+|-....-.++. .= .|.+|.-|-.+|.-....||.|-..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 45899998876532221 23 3567999999998888899999653
No 130
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.85 E-value=1.9 Score=32.06 Aligned_cols=56 Identities=21% Similarity=0.666 Sum_probs=33.2
Q ss_pred CCCCCCcceecccC-CCCccccCCCC-------ccchhhHHhhcCC-CC---CCcccccccccccCCCceee
Q 030551 72 DLEREDECGICLEP-CTKMVLPNCCH-------AMCIKCYRNWNTK-SE---SCPFCRGSMKRVNSEDLWVL 131 (175)
Q Consensus 72 ~~~~~~~C~IC~~~-~~~~~~~~C~H-------~fc~~Ci~~w~~~-~~---~CP~CR~~i~~~~~~~~~~~ 131 (175)
...++..|.||... |-+. ||| .||..|-.+...+ ++ .|.+|+....-+..+..|+.
T Consensus 61 Gv~ddatC~IC~KTKFADG----~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il~ksg~wf~ 128 (169)
T KOG3799|consen 61 GVGDDATCGICHKTKFADG----CGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEILTKSGAWFY 128 (169)
T ss_pred ccCcCcchhhhhhcccccc----cCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHHHHhcchHHH
Confidence 45566899999864 4443 555 4566776544222 22 79999876654444444443
No 131
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=72.74 E-value=4.1 Score=34.50 Aligned_cols=46 Identities=4% Similarity=-0.198 Sum_probs=35.8
Q ss_pred CCCCcceecccCCCCccccCCCC-ccchhhHHhhcCCCCCCcccccccc
Q 030551 74 EREDECGICLEPCTKMVLPNCCH-AMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~C~H-~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
-...+|..|-+.....+..+|+| .||.+|.. .....+||.|.....
T Consensus 341 ~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 341 MSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHNDH 387 (394)
T ss_pred hhhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccce
Confidence 34478999988777777777999 78999987 566779999976554
No 132
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=72.09 E-value=5.6 Score=33.81 Aligned_cols=47 Identities=28% Similarity=0.668 Sum_probs=31.6
Q ss_pred CCCcceecccCCC-------------------CccccCCCCccchhhHHhhcCC---------CCCCcccccccc
Q 030551 75 REDECGICLEPCT-------------------KMVLPNCCHAMCIKCYRNWNTK---------SESCPFCRGSMK 121 (175)
Q Consensus 75 ~~~~C~IC~~~~~-------------------~~~~~~C~H~fc~~Ci~~w~~~---------~~~CP~CR~~i~ 121 (175)
.+.+|++|+..-. .-...||||.--.+=..-|... +..||+|-..+.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 4579999985321 1345579997666677778321 238999987775
No 133
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=71.76 E-value=1.7 Score=34.75 Aligned_cols=44 Identities=16% Similarity=0.503 Sum_probs=35.5
Q ss_pred CCCcceecccCCCC-ccccCCCCccchhhHHhhcCCCCCCccccc
Q 030551 75 REDECGICLEPCTK-MVLPNCCHAMCIKCYRNWNTKSESCPFCRG 118 (175)
Q Consensus 75 ~~~~C~IC~~~~~~-~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~ 118 (175)
.-..|.+|...... ....+|+-.+|..|+..+.+..+.||.|.-
T Consensus 180 nlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhc
Confidence 34789999987654 445668888999999999988889999943
No 134
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=71.49 E-value=0.39 Score=31.59 Aligned_cols=43 Identities=21% Similarity=0.542 Sum_probs=24.6
Q ss_pred CcceecccCCCCccccCCCCccchhhHHhhcCCCCCCccccccccccc
Q 030551 77 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVN 124 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~~~ 124 (175)
..||.|...+...- +|.+|..|-..+. ....||-|..++..+.
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~~~-~~a~CPdC~~~Le~Lk 44 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKDYK-KEAFCPDCGQPLEVLK 44 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--EEE-EEEE-TTT-SB-EEEE
T ss_pred CcCCCCCCccEEeC----CEEECccccccce-ecccCCCcccHHHHHH
Confidence 57999988754321 7888999987653 3458999999987554
No 135
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=70.48 E-value=1.4 Score=22.48 Aligned_cols=22 Identities=23% Similarity=0.640 Sum_probs=11.7
Q ss_pred cchhhHHhhcCCCCCCcccccc
Q 030551 98 MCIKCYRNWNTKSESCPFCRGS 119 (175)
Q Consensus 98 fc~~Ci~~w~~~~~~CP~CR~~ 119 (175)
||..|-.+......-||.|-.+
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCc
Confidence 3444544444455567777554
No 136
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=70.00 E-value=1.2 Score=27.70 Aligned_cols=19 Identities=26% Similarity=1.011 Sum_probs=14.9
Q ss_pred ccccCCCCccchhhHHhhc
Q 030551 89 MVLPNCCHAMCIKCYRNWN 107 (175)
Q Consensus 89 ~~~~~C~H~fc~~Ci~~w~ 107 (175)
..-+.|+|.||..|..+|-
T Consensus 41 v~C~~C~~~fC~~C~~~~H 59 (64)
T smart00647 41 VTCPKCGFSFCFRCKVPWH 59 (64)
T ss_pred eECCCCCCeECCCCCCcCC
Confidence 3333699999999998884
No 137
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=67.49 E-value=1.8 Score=37.69 Aligned_cols=46 Identities=22% Similarity=0.626 Sum_probs=0.0
Q ss_pred CCcceecccCCC-------------------CccccCCCCccchhhHHhhcCC---------CCCCcccccccc
Q 030551 76 EDECGICLEPCT-------------------KMVLPNCCHAMCIKCYRNWNTK---------SESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~-------------------~~~~~~C~H~fc~~Ci~~w~~~---------~~~CP~CR~~i~ 121 (175)
..+|++|+..-. .-...||||.--.+...-|.+. +..||+|-.++.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 579999995321 1344569998878888889431 238999988876
No 138
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=66.83 E-value=7.2 Score=27.58 Aligned_cols=24 Identities=38% Similarity=0.751 Sum_probs=17.3
Q ss_pred CCccchhhHHhhcC---------CCCCCccccc
Q 030551 95 CHAMCIKCYRNWNT---------KSESCPFCRG 118 (175)
Q Consensus 95 ~H~fc~~Ci~~w~~---------~~~~CP~CR~ 118 (175)
.=.||..|+..+.. ....||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 55799999866522 2347999986
No 139
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=66.26 E-value=1.2 Score=28.32 Aligned_cols=39 Identities=21% Similarity=0.439 Sum_probs=20.6
Q ss_pred CCcccccccccccCCCceeecCCCCCCCCcccChHHHHHHHHHhhhCCCCCch
Q 030551 112 SCPFCRGSMKRVNSEDLWVLTCTDDVIDPETVSKEDLLRFYLYINSLPKDYPD 164 (175)
Q Consensus 112 ~CP~CR~~i~~~~~~~~~~~~~~~~~~d~~~~~~e~l~r~~~~i~~lp~~~~~ 164 (175)
.||.||.++.....+. +..-...++.|--..-+|+++|+
T Consensus 10 aCP~~kg~L~~~~~~~--------------~L~c~~~~~aYpI~dGIPvlL~~ 48 (60)
T COG2835 10 ACPVCKGPLVYDEEKQ--------------ELICPRCKLAYPIRDGIPVLLPD 48 (60)
T ss_pred eccCcCCcceEeccCC--------------EEEecccCceeecccCccccCch
Confidence 6888888865332221 12222334555555566766665
No 140
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=65.44 E-value=3.6 Score=34.89 Aligned_cols=41 Identities=24% Similarity=0.546 Sum_probs=29.6
Q ss_pred CcceecccCCC---CccccCCCCccchhhHHhhcCCC---CCCcccc
Q 030551 77 DECGICLEPCT---KMVLPNCCHAMCIKCYRNWNTKS---ESCPFCR 117 (175)
Q Consensus 77 ~~C~IC~~~~~---~~~~~~C~H~fc~~Ci~~w~~~~---~~CP~CR 117 (175)
..||+=-+.-. .|+...|||..-.+-+++...++ ..||.|-
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 67886544332 27777799999999998875443 3899994
No 141
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=65.10 E-value=6.1 Score=24.66 Aligned_cols=29 Identities=21% Similarity=0.608 Sum_probs=24.4
Q ss_pred CcceecccCCC--C--ccccCCCCccchhhHHh
Q 030551 77 DECGICLEPCT--K--MVLPNCCHAMCIKCYRN 105 (175)
Q Consensus 77 ~~C~IC~~~~~--~--~~~~~C~H~fc~~Ci~~ 105 (175)
..|++|-+.+. + .+-+.||-.+|.+|..+
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 57999999985 2 77788999999999855
No 142
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=64.56 E-value=1.7 Score=27.83 Aligned_cols=32 Identities=22% Similarity=0.504 Sum_probs=16.9
Q ss_pred CCCcceecccCCCC----ccccCCCCccchhhHHhh
Q 030551 75 REDECGICLEPCTK----MVLPNCCHAMCIKCYRNW 106 (175)
Q Consensus 75 ~~~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w 106 (175)
+...|.+|...|.. -.-..||+.||.+|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 34689999998854 223359999999998655
No 143
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.49 E-value=3.7 Score=33.72 Aligned_cols=44 Identities=11% Similarity=0.261 Sum_probs=33.6
Q ss_pred CCcceecccCCCC----ccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 76 EDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
...|+|---.+.. ..+-.|||.|-..-+.+.- ...|++|.+++.
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~ 158 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQ 158 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCccc
Confidence 3788886555543 6666799999999988753 569999998875
No 144
>PLN02195 cellulose synthase A
Probab=64.45 E-value=7.1 Score=37.82 Aligned_cols=45 Identities=20% Similarity=0.512 Sum_probs=33.3
Q ss_pred CcceecccCCCC-------ccccCCCCccchhhHHh-hcCCCCCCcccccccc
Q 030551 77 DECGICLEPCTK-------MVLPNCCHAMCIKCYRN-WNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~-------~~~~~C~H~fc~~Ci~~-w~~~~~~CP~CR~~i~ 121 (175)
..|.||-+.... .....|+-..|..|.+- -.+.++.||.|+...+
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 579999886532 44556888899999932 1456779999988876
No 145
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.38 E-value=2 Score=35.99 Aligned_cols=48 Identities=29% Similarity=0.667 Sum_probs=38.8
Q ss_pred CCCcceecccCCCCcc-ccCCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 75 REDECGICLEPCTKMV-LPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~-~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
....|-||...+..+. ...|+|.||..|...|......||.|+.....
T Consensus 104 ~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred CccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 4478999988776533 33499999999999998888899999987763
No 146
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=64.28 E-value=2.7 Score=25.82 Aligned_cols=12 Identities=25% Similarity=0.935 Sum_probs=6.4
Q ss_pred CCCCcccccccc
Q 030551 110 SESCPFCRGSMK 121 (175)
Q Consensus 110 ~~~CP~CR~~i~ 121 (175)
...||+|..+++
T Consensus 20 ~~~CPlC~r~l~ 31 (54)
T PF04423_consen 20 KGCCPLCGRPLD 31 (54)
T ss_dssp SEE-TTT--EE-
T ss_pred CCcCCCCCCCCC
Confidence 338999999986
No 147
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=61.08 E-value=3.2 Score=24.24 Aligned_cols=30 Identities=20% Similarity=0.504 Sum_probs=16.7
Q ss_pred cCCCCccchhhHHhhcCCCCCCccccc-cccc
Q 030551 92 PNCCHAMCIKCYRNWNTKSESCPFCRG-SMKR 122 (175)
Q Consensus 92 ~~C~H~fc~~Ci~~w~~~~~~CP~CR~-~i~~ 122 (175)
..|||.|-...-.. -.....||.|.. .+.+
T Consensus 9 ~~Cg~~fe~~~~~~-~~~~~~CP~Cg~~~~~r 39 (42)
T PF09723_consen 9 EECGHEFEVLQSIS-EDDPVPCPECGSTEVRR 39 (42)
T ss_pred CCCCCEEEEEEEcC-CCCCCcCCCCCCCceEE
Confidence 45888774432110 123448999988 5543
No 148
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=60.46 E-value=6.6 Score=24.68 Aligned_cols=41 Identities=22% Similarity=0.623 Sum_probs=27.3
Q ss_pred cceecccCCCC---ccccCCCC--ccchhhHHhhcCCCCCCcccccccc
Q 030551 78 ECGICLEPCTK---MVLPNCCH--AMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 78 ~C~IC~~~~~~---~~~~~C~H--~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
.|-.|-..+.. -... |.+ +||.+|....+ ...||.|-..+.
T Consensus 7 nCE~C~~dLp~~s~~A~I-CSfECTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYI-CSFECTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred CccccCCCCCCCCCcceE-EeEeCcccHHHHHHHh--cCcCcCCCCccc
Confidence 46666555443 1222 655 89999998865 459999987764
No 149
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=60.33 E-value=3.7 Score=37.51 Aligned_cols=21 Identities=43% Similarity=0.953 Sum_probs=16.6
Q ss_pred CCCCccchhhHHhhcCCCCCCccc
Q 030551 93 NCCHAMCIKCYRNWNTKSESCPFC 116 (175)
Q Consensus 93 ~C~H~fc~~Ci~~w~~~~~~CP~C 116 (175)
.|++.||..|... .+..||.|
T Consensus 536 ~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 536 TCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred HHHHHHHHHHHhc---cCCCCCch
Confidence 4999999999754 33459999
No 150
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.86 E-value=5.5 Score=26.39 Aligned_cols=26 Identities=27% Similarity=0.622 Sum_probs=20.0
Q ss_pred CCCccchhhHHhhcCCCCCCcccccccc
Q 030551 94 CCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 94 C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
=.|+||.+|...-+ +..||.|-..+.
T Consensus 27 fEcTFCadCae~~l--~g~CPnCGGelv 52 (84)
T COG3813 27 FECTFCADCAENRL--HGLCPNCGGELV 52 (84)
T ss_pred EeeehhHhHHHHhh--cCcCCCCCchhh
Confidence 36789999997644 459999977664
No 152
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=59.79 E-value=7.6 Score=23.61 Aligned_cols=30 Identities=33% Similarity=0.592 Sum_probs=21.8
Q ss_pred CcceecccCCCC----ccccCCCCccchhhHHhh
Q 030551 77 DECGICLEPCTK----MVLPNCCHAMCIKCYRNW 106 (175)
Q Consensus 77 ~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w 106 (175)
..|.+|-..|.. ..-..||+.||..|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 468888776654 333469999999998654
No 153
>PRK04023 DNA polymerase II large subunit; Validated
Probab=58.28 E-value=8.8 Score=37.38 Aligned_cols=45 Identities=18% Similarity=0.394 Sum_probs=32.7
Q ss_pred CCCcceecccCCCCccccCCCC-----ccchhhHHhhcCCCCCCcccccccc
Q 030551 75 REDECGICLEPCTKMVLPNCCH-----AMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~C~H-----~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
....|+-|-........+.||. .||.+|-. ......||.|.....
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~--~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGI--EVEEDECEKCGREPT 674 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccccC--cCCCCcCCCCCCCCC
Confidence 3478999987766667777984 58999943 344568999987765
No 154
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=57.73 E-value=6.7 Score=23.96 Aligned_cols=37 Identities=19% Similarity=0.450 Sum_probs=20.8
Q ss_pred CCcceecccCCCCccccCCCCccchhhHHhhcC--CCCCCcccccc
Q 030551 76 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT--KSESCPFCRGS 119 (175)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~--~~~~CP~CR~~ 119 (175)
...||.|-+.+.... . + ..|...-.. ..-.||+|...
T Consensus 2 ~f~CP~C~~~~~~~~-L-~-----~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSESS-L-V-----EHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCHHH-H-H-----HHHHhHCcCCCCCccCCCchhh
Confidence 468999988544322 1 2 334443322 23479999754
No 155
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=57.68 E-value=7.1 Score=31.58 Aligned_cols=26 Identities=23% Similarity=0.754 Sum_probs=20.9
Q ss_pred chhhHHhhcCCCCCCccccccccccc
Q 030551 99 CIKCYRNWNTKSESCPFCRGSMKRVN 124 (175)
Q Consensus 99 c~~Ci~~w~~~~~~CP~CR~~i~~~~ 124 (175)
|.+|-.+.-.+...||+|++.-...+
T Consensus 197 C~sC~qqIHRNAPiCPlCK~KsRSrn 222 (230)
T PF10146_consen 197 CQSCHQQIHRNAPICPLCKAKSRSRN 222 (230)
T ss_pred hHhHHHHHhcCCCCCcccccccccCC
Confidence 99999988788889999987654333
No 156
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=56.58 E-value=5.6 Score=25.84 Aligned_cols=11 Identities=27% Similarity=1.117 Sum_probs=7.9
Q ss_pred ccchhhHHhhc
Q 030551 97 AMCIKCYRNWN 107 (175)
Q Consensus 97 ~fc~~Ci~~w~ 107 (175)
.||..|+.+|.
T Consensus 11 gFCRNCLskWy 21 (68)
T PF06844_consen 11 GFCRNCLSKWY 21 (68)
T ss_dssp S--HHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 49999999994
No 157
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=56.05 E-value=11 Score=23.25 Aligned_cols=28 Identities=29% Similarity=0.710 Sum_probs=14.3
Q ss_pred cccCCCCccchhhHHhhcCCCCCCcccc
Q 030551 90 VLPNCCHAMCIKCYRNWNTKSESCPFCR 117 (175)
Q Consensus 90 ~~~~C~H~fc~~Ci~~w~~~~~~CP~CR 117 (175)
.-+.|++.||.+|=.=.-+.--.||-|.
T Consensus 23 ~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 23 RCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp --TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred ECCCCCCccccCcChhhhccccCCcCCC
Confidence 3457999999999543223333899884
No 158
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=55.74 E-value=7.5 Score=21.12 Aligned_cols=34 Identities=24% Similarity=0.602 Sum_probs=19.6
Q ss_pred ceecccCCCC--ccccCCCCccchhhHHhhcCCCCCCccccccc
Q 030551 79 CGICLEPCTK--MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSM 120 (175)
Q Consensus 79 C~IC~~~~~~--~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i 120 (175)
|..|...+.. ..+..=+..||..|. .|..|+.++
T Consensus 2 C~~C~~~i~~~~~~~~~~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRALGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEeCCccccccCC--------CCcccCCcC
Confidence 6667666554 233333556666664 677776655
No 159
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=55.59 E-value=9.7 Score=30.00 Aligned_cols=37 Identities=30% Similarity=0.697 Sum_probs=25.7
Q ss_pred CCcceecccC-----CCC---ccccCCCCccchhhHHhhcCCCCCCcccc
Q 030551 76 EDECGICLEP-----CTK---MVLPNCCHAMCIKCYRNWNTKSESCPFCR 117 (175)
Q Consensus 76 ~~~C~IC~~~-----~~~---~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR 117 (175)
...|.+|-+. |.. ..-..|+..||..|..+ ..||.|-
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 3678888753 111 33446999999999752 5799994
No 160
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=55.02 E-value=7.5 Score=31.48 Aligned_cols=25 Identities=20% Similarity=0.844 Sum_probs=20.2
Q ss_pred cchhhHHhhcCCCCCCccccccccc
Q 030551 98 MCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 98 fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
.|.+|..+.-.+...||+|+..-..
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKsRS 275 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKSRS 275 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhcccc
Confidence 4889998887788899999876543
No 161
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.99 E-value=14 Score=26.59 Aligned_cols=41 Identities=27% Similarity=0.527 Sum_probs=29.8
Q ss_pred CcceecccCCCCc--------------cccCCCCccchhhHHhhcCCCCCCcccc
Q 030551 77 DECGICLEPCTKM--------------VLPNCCHAMCIKCYRNWNTKSESCPFCR 117 (175)
Q Consensus 77 ~~C~IC~~~~~~~--------------~~~~C~H~fc~~Ci~~w~~~~~~CP~CR 117 (175)
..|--|...|..+ .-+.|.+.||.+|=.-+-+.-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 4588888876642 2567999999999766544445799985
No 162
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=54.31 E-value=2.9 Score=25.89 Aligned_cols=17 Identities=35% Similarity=1.095 Sum_probs=14.0
Q ss_pred ccCCCCccchhhHHhhc
Q 030551 91 LPNCCHAMCIKCYRNWN 107 (175)
Q Consensus 91 ~~~C~H~fc~~Ci~~w~ 107 (175)
-+.|++.||..|-.+|-
T Consensus 43 C~~C~~~fC~~C~~~~H 59 (64)
T PF01485_consen 43 CPSCGTEFCFKCGEPWH 59 (64)
T ss_dssp TTSCCSEECSSSTSESC
T ss_pred CCCCCCcCccccCcccC
Confidence 34599999999998883
No 163
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=54.27 E-value=4.2 Score=35.43 Aligned_cols=31 Identities=35% Similarity=0.760 Sum_probs=0.0
Q ss_pred ccccCCCCccchhhHHhhcC------CCCCCccccccccc
Q 030551 89 MVLPNCCHAMCIKCYRNWNT------KSESCPFCRGSMKR 122 (175)
Q Consensus 89 ~~~~~C~H~fc~~Ci~~w~~------~~~~CP~CR~~i~~ 122 (175)
-+-++|||.+-.. .|.. ....||+||..-.+
T Consensus 304 ~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~~ 340 (416)
T PF04710_consen 304 WVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGPY 340 (416)
T ss_dssp ----------------------------------------
T ss_pred eeeccccceeeec---ccccccccccccccCCCccccCCc
Confidence 4455699987554 4421 24589999976553
No 164
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=53.62 E-value=3.9 Score=22.28 Aligned_cols=24 Identities=25% Similarity=0.577 Sum_probs=12.6
Q ss_pred CCccchhhHHhhcC----CCCCCccccc
Q 030551 95 CHAMCIKCYRNWNT----KSESCPFCRG 118 (175)
Q Consensus 95 ~H~fc~~Ci~~w~~----~~~~CP~CR~ 118 (175)
.|.||..|-.+-.. ....||.|..
T Consensus 2 ~~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 2 NHRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TTSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CCcccCcCCccccCCCCcCEeECCCCcC
Confidence 47888888866522 2337888864
No 165
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=50.57 E-value=10 Score=31.20 Aligned_cols=46 Identities=20% Similarity=0.588 Sum_probs=33.5
Q ss_pred CCcceecccCCCC----ccccCCCC-----ccchhhHHhhcC--CCCCCcccccccc
Q 030551 76 EDECGICLEPCTK----MVLPNCCH-----AMCIKCYRNWNT--KSESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~~----~~~~~C~H-----~fc~~Ci~~w~~--~~~~CP~CR~~i~ 121 (175)
...|-||...... ....+|.- ..|..|+..|.. .+..|..|.....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 4689999986542 35666743 359999999976 5568999987665
No 166
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=50.50 E-value=5.6 Score=37.77 Aligned_cols=46 Identities=26% Similarity=0.725 Sum_probs=32.9
Q ss_pred CCcceecccCCCC--ccccCCCCccchhhHHhhc---C---CCCCCcccccccc
Q 030551 76 EDECGICLEPCTK--MVLPNCCHAMCIKCYRNWN---T---KSESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~~--~~~~~C~H~fc~~Ci~~w~---~---~~~~CP~CR~~i~ 121 (175)
...|..|.....+ -+.+.|||.+|..|++.|. . ....|++|+..-.
T Consensus 229 ~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~ 282 (889)
T KOG1356|consen 229 REMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCN 282 (889)
T ss_pred chhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcC
Confidence 3678888766553 5667799999999999993 1 1227888875543
No 167
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.01 E-value=5.9 Score=30.44 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=19.1
Q ss_pred CCCCcceecccCCCC---ccccCCCCccch
Q 030551 74 EREDECGICLEPCTK---MVLPNCCHAMCI 100 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~---~~~~~C~H~fc~ 100 (175)
.+.-+|.||+|.+.. ....||-..+|+
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 345789999998875 445568776664
No 168
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.94 E-value=2.1 Score=35.31 Aligned_cols=44 Identities=27% Similarity=0.606 Sum_probs=32.3
Q ss_pred CCcceecccCCCC------ccccC--------CCCccchhhHHhhcCCC-CCCcccccc
Q 030551 76 EDECGICLEPCTK------MVLPN--------CCHAMCIKCYRNWNTKS-ESCPFCRGS 119 (175)
Q Consensus 76 ~~~C~IC~~~~~~------~~~~~--------C~H~fc~~Ci~~w~~~~-~~CP~CR~~ 119 (175)
...|.||...+.. +.+.. |||..|..|+..-+.+. ..||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 3679999876551 34444 99999999998875433 589999875
No 169
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=48.60 E-value=7.3 Score=28.00 Aligned_cols=17 Identities=12% Similarity=0.528 Sum_probs=14.0
Q ss_pred hhcCCCCCCcccccccc
Q 030551 105 NWNTKSESCPFCRGSMK 121 (175)
Q Consensus 105 ~w~~~~~~CP~CR~~i~ 121 (175)
+.+.+.+.|+.|++|++
T Consensus 80 KmLGr~D~CM~C~~pLT 96 (114)
T PF11023_consen 80 KMLGRVDACMHCKEPLT 96 (114)
T ss_pred hhhchhhccCcCCCcCc
Confidence 44667779999999997
No 170
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.22 E-value=8.6 Score=34.85 Aligned_cols=43 Identities=33% Similarity=0.794 Sum_probs=34.4
Q ss_pred CCCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 75 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
....|.||.... ....++|. +.-|..+|...+..||.|++.+.
T Consensus 478 ~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~ 520 (543)
T KOG0802|consen 478 PNDVCAICYQEM-SARITPCS---HALCLRKWLYVQEVCPLCHTYMK 520 (543)
T ss_pred ccCcchHHHHHH-Hhcccccc---chhHHHhhhhhccccCCCchhhh
Confidence 447899998887 54555677 67899999888889999988775
No 171
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=46.02 E-value=15 Score=32.20 Aligned_cols=31 Identities=29% Similarity=0.805 Sum_probs=22.8
Q ss_pred CCCcceecccCCCC---ccccCCCCccchhhHHhh
Q 030551 75 REDECGICLEPCTK---MVLPNCCHAMCIKCYRNW 106 (175)
Q Consensus 75 ~~~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w 106 (175)
...+|+||+-.... .+. -|....|..|..+.
T Consensus 73 r~~ecpicflyyps~~n~~r-cC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 73 RKTECPICFLYYPSAKNLVR-CCSETICGECFAPF 106 (482)
T ss_pred ccccCceeeeecccccchhh-hhccchhhhheecc
Confidence 34689999876543 333 38889999999776
No 172
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.75 E-value=12 Score=26.98 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=15.2
Q ss_pred cChHHHHHHHHHhhhCCCCC
Q 030551 143 VSKEDLLRFYLYINSLPKDY 162 (175)
Q Consensus 143 ~~~e~l~r~~~~i~~lp~~~ 162 (175)
+...+|.|.|+.+-.||...
T Consensus 26 Vss~HLARSyHHLfPl~~f~ 45 (112)
T TIGR00622 26 ILSTHLARSYHHLFPLKAFQ 45 (112)
T ss_pred eccchHHHhhhccCCCcccc
Confidence 44458899999998888764
No 173
>PRK11827 hypothetical protein; Provisional
Probab=44.61 E-value=3.5 Score=26.31 Aligned_cols=11 Identities=36% Similarity=1.099 Sum_probs=9.0
Q ss_pred CCccccccccc
Q 030551 112 SCPFCRGSMKR 122 (175)
Q Consensus 112 ~CP~CR~~i~~ 122 (175)
.||.|+.++..
T Consensus 10 aCP~ckg~L~~ 20 (60)
T PRK11827 10 ACPVCNGKLWY 20 (60)
T ss_pred ECCCCCCcCeE
Confidence 79999988863
No 174
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.21 E-value=7.8 Score=29.46 Aligned_cols=24 Identities=33% Similarity=0.697 Sum_probs=19.3
Q ss_pred CCccchhhHHhhcCCCCCCcccccccc
Q 030551 95 CHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 95 ~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
.+.||.+|-.+-+. .||.|..+|.
T Consensus 27 ~~~fC~kCG~~tI~---~Cp~C~~~Ir 50 (158)
T PF10083_consen 27 REKFCSKCGAKTIT---SCPNCSTPIR 50 (158)
T ss_pred HHHHHHHhhHHHHH---HCcCCCCCCC
Confidence 46799999877553 8999998886
No 175
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.81 E-value=6.6 Score=37.09 Aligned_cols=40 Identities=25% Similarity=0.586 Sum_probs=27.1
Q ss_pred CCcceecccCCC-------CccccCCCCccchhhHHhhcCCCCCCccc
Q 030551 76 EDECGICLEPCT-------KMVLPNCCHAMCIKCYRNWNTKSESCPFC 116 (175)
Q Consensus 76 ~~~C~IC~~~~~-------~~~~~~C~H~fc~~Ci~~w~~~~~~CP~C 116 (175)
+..|..|+++.. ..+...|||.||..|+..-..++. |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 358999998754 244556999999999965433332 5444
No 176
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=42.76 E-value=16 Score=21.91 Aligned_cols=30 Identities=23% Similarity=0.620 Sum_probs=15.4
Q ss_pred cCCCCccchhhHHhhc-CCCCCCccccc-ccccc
Q 030551 92 PNCCHAMCIKCYRNWN-TKSESCPFCRG-SMKRV 123 (175)
Q Consensus 92 ~~C~H~fc~~Ci~~w~-~~~~~CP~CR~-~i~~~ 123 (175)
..|||.|=..- ... .....||.|.+ .+.++
T Consensus 9 ~~Cg~~fe~~~--~~~~~~~~~CP~Cg~~~~~r~ 40 (52)
T TIGR02605 9 TACGHRFEVLQ--KMSDDPLATCPECGGEKLRRL 40 (52)
T ss_pred CCCCCEeEEEE--ecCCCCCCCCCCCCCCceeEE
Confidence 45777763221 101 12237999987 45443
No 177
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=42.71 E-value=18 Score=30.92 Aligned_cols=41 Identities=20% Similarity=0.475 Sum_probs=27.0
Q ss_pred CcceecccCCCC---ccccCCCCccchhhHHhhcCCCCCCcccc
Q 030551 77 DECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTKSESCPFCR 117 (175)
Q Consensus 77 ~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR 117 (175)
..|-.|.+.... .....|.|.||.+|=.=.-+.-..||-|.
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred cceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 458888554433 44456999999999643323333799996
No 178
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=41.82 E-value=17 Score=34.13 Aligned_cols=48 Identities=23% Similarity=0.553 Sum_probs=31.0
Q ss_pred CCCCCcceecccCCCC----------ccccCCCCcc--------------------chhhHHhhcCC--------CCCCc
Q 030551 73 LEREDECGICLEPCTK----------MVLPNCCHAM--------------------CIKCYRNWNTK--------SESCP 114 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~----------~~~~~C~H~f--------------------c~~Ci~~w~~~--------~~~CP 114 (175)
..+.-.|.-|++.+.+ ...|+||-.| |..|-.++..- ...||
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp 177 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACP 177 (750)
T ss_pred CCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCc
Confidence 3455789999876543 4455666654 99999888321 12799
Q ss_pred cccccc
Q 030551 115 FCRGSM 120 (175)
Q Consensus 115 ~CR~~i 120 (175)
.|-=.+
T Consensus 178 ~CGP~~ 183 (750)
T COG0068 178 KCGPHL 183 (750)
T ss_pred ccCCCe
Confidence 994433
No 179
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=40.86 E-value=9.6 Score=19.75 Aligned_cols=9 Identities=33% Similarity=0.981 Sum_probs=4.4
Q ss_pred CCCCccccc
Q 030551 110 SESCPFCRG 118 (175)
Q Consensus 110 ~~~CP~CR~ 118 (175)
..-||.|-+
T Consensus 16 ~~fC~~CG~ 24 (26)
T PF13248_consen 16 AKFCPNCGA 24 (26)
T ss_pred cccChhhCC
Confidence 335555543
No 180
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=40.63 E-value=8.4 Score=33.15 Aligned_cols=14 Identities=14% Similarity=0.465 Sum_probs=10.9
Q ss_pred CCCcceecccCCCC
Q 030551 75 REDECGICLEPCTK 88 (175)
Q Consensus 75 ~~~~C~IC~~~~~~ 88 (175)
.+..|++|-+..+.
T Consensus 14 l~ElCPVCGDkVSG 27 (475)
T KOG4218|consen 14 LGELCPVCGDKVSG 27 (475)
T ss_pred cccccccccCcccc
Confidence 44689999988775
No 181
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=39.19 E-value=9.9 Score=22.53 Aligned_cols=40 Identities=20% Similarity=0.446 Sum_probs=24.7
Q ss_pred ceecccCCCC---ccccCCCCccchhhHHhhc------CCCCCCccccc
Q 030551 79 CGICLEPCTK---MVLPNCCHAMCIKCYRNWN------TKSESCPFCRG 118 (175)
Q Consensus 79 C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w~------~~~~~CP~CR~ 118 (175)
|.||...... ..-..|+..||..|+..-. ...-.||.|+.
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 6777763332 3333588899999985432 12447888853
No 182
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.09 E-value=14 Score=27.29 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=16.3
Q ss_pred ceecccCCCCccccCCCCccchh
Q 030551 79 CGICLEPCTKMVLPNCCHAMCIK 101 (175)
Q Consensus 79 C~IC~~~~~~~~~~~C~H~fc~~ 101 (175)
=-||.+.-...+.-.|||+||..
T Consensus 60 lfi~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 60 LFICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEEEecccccEEEEeccccccCh
Confidence 34677766666666799999864
No 183
>PF11682 DUF3279: Protein of unknown function (DUF3279); InterPro: IPR021696 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=37.95 E-value=30 Score=25.49 Aligned_cols=56 Identities=18% Similarity=0.331 Sum_probs=31.1
Q ss_pred CCccccccccc---ccCCCceeecCCCCC----------CCCcccChHHHHHHHHHhhhCCCCCchhHH
Q 030551 112 SCPFCRGSMKR---VNSEDLWVLTCTDDV----------IDPETVSKEDLLRFYLYINSLPKDYPDALF 167 (175)
Q Consensus 112 ~CP~CR~~i~~---~~~~~~~~~~~~~~~----------~d~~~~~~e~l~r~~~~i~~lp~~~~~~~~ 167 (175)
.|..|+.++.. .....-|+......+ ++++.-....++||-.+|.+++.+.+.+-|
T Consensus 30 tC~~Cg~~L~lh~~~~~~~pWFEH~~~~~~~~~l~~C~yl~pe~k~~~ri~~L~~~i~~~~pv~~~~~W 98 (128)
T PF11682_consen 30 TCHSCGCPLILHPGTDTEPPWFEHDQHSLAENGLMQCPYLDPEEKERRRIKRLRRMIADLDPVPRKTDW 98 (128)
T ss_pred EEecCCceEEEecCCcCCCCccccCccccChhhcccCceECcccchHHHHHHHHHhccccCCCCcCceE
Confidence 56666666642 234444544433322 333344455567778888888877765544
No 184
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=36.10 E-value=25 Score=21.46 Aligned_cols=9 Identities=33% Similarity=1.486 Sum_probs=6.2
Q ss_pred CCCCCCccc
Q 030551 108 TKSESCPFC 116 (175)
Q Consensus 108 ~~~~~CP~C 116 (175)
.....||.|
T Consensus 47 ~~~~~CP~C 55 (55)
T PF14311_consen 47 RRGKGCPYC 55 (55)
T ss_pred cCCCCCCCC
Confidence 345588887
No 185
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=35.89 E-value=23 Score=24.79 Aligned_cols=12 Identities=33% Similarity=1.135 Sum_probs=9.9
Q ss_pred CCCccccccccc
Q 030551 111 ESCPFCRGSMKR 122 (175)
Q Consensus 111 ~~CP~CR~~i~~ 122 (175)
..||.|+++++.
T Consensus 81 ~~Cp~C~spFNp 92 (105)
T COG4357 81 GSCPYCQSPFNP 92 (105)
T ss_pred CCCCCcCCCCCc
Confidence 379999999863
No 186
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=34.81 E-value=17 Score=20.39 Aligned_cols=13 Identities=38% Similarity=1.055 Sum_probs=9.0
Q ss_pred CCCCccccccccc
Q 030551 110 SESCPFCRGSMKR 122 (175)
Q Consensus 110 ~~~CP~CR~~i~~ 122 (175)
...||.|.+.+.+
T Consensus 26 ~~~CP~Cg~~~~r 38 (41)
T smart00834 26 LATCPECGGDVRR 38 (41)
T ss_pred CCCCCCCCCccee
Confidence 3479999876543
No 187
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=33.88 E-value=23 Score=29.38 Aligned_cols=42 Identities=26% Similarity=0.572 Sum_probs=23.5
Q ss_pred CcceecccCCCCcccc-CCCCc----cchhhHHhh-cCCCCCCccccccc
Q 030551 77 DECGICLEPCTKMVLP-NCCHA----MCIKCYRNW-NTKSESCPFCRGSM 120 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~-~C~H~----fc~~Ci~~w-~~~~~~CP~CR~~i 120 (175)
..|.||++....++-. .=-|+ =|.+|..+| +-.++.|| |+.+
T Consensus 31 sfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~p--rsk~ 78 (285)
T PF06937_consen 31 SFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCP--RSKL 78 (285)
T ss_pred eecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCC--cccc
Confidence 4577777654331111 11221 258999999 55567898 4444
No 189
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=33.63 E-value=27 Score=19.11 Aligned_cols=10 Identities=30% Similarity=0.857 Sum_probs=7.4
Q ss_pred CCCCcccccc
Q 030551 110 SESCPFCRGS 119 (175)
Q Consensus 110 ~~~CP~CR~~ 119 (175)
...||.|..+
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 4489999664
No 190
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=33.37 E-value=24 Score=33.11 Aligned_cols=50 Identities=18% Similarity=0.463 Sum_probs=34.3
Q ss_pred CCCcceecccCCCC----------ccccCCCCccchhhHHhh----------cCCCCCCccccccccccc
Q 030551 75 REDECGICLEPCTK----------MVLPNCCHAMCIKCYRNW----------NTKSESCPFCRGSMKRVN 124 (175)
Q Consensus 75 ~~~~C~IC~~~~~~----------~~~~~C~H~fc~~Ci~~w----------~~~~~~CP~CR~~i~~~~ 124 (175)
....|.||-|.-+. --...|...||..|.+.. ..+-+.|.+|+.++.++.
T Consensus 116 fnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKlk 185 (900)
T KOG0956|consen 116 FNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKLK 185 (900)
T ss_pred hcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHHhh
Confidence 34789999987432 122348889999999664 122347999998887543
No 191
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=33.33 E-value=12 Score=31.87 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=35.3
Q ss_pred CCCcceecccCCCCccccCCCC-ccchhhHHhh-cCCCCCCcccccccc
Q 030551 75 REDECGICLEPCTKMVLPNCCH-AMCIKCYRNW-NTKSESCPFCRGSMK 121 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~C~H-~fc~~Ci~~w-~~~~~~CP~CR~~i~ 121 (175)
....|.+|++.-.....-+|+| .||..|.-+- .++...||+|...+.
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ 183 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVT 183 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhh
Confidence 3467888988766666677999 8999997554 566668999976554
No 192
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=33.31 E-value=16 Score=30.47 Aligned_cols=27 Identities=22% Similarity=0.555 Sum_probs=17.2
Q ss_pred CCCccchhhHHhhcCC----CCCCccccccc
Q 030551 94 CCHAMCIKCYRNWNTK----SESCPFCRGSM 120 (175)
Q Consensus 94 C~H~fc~~Ci~~w~~~----~~~CP~CR~~i 120 (175)
=.|.||..|-.+-... ...||.|+...
T Consensus 109 ~~~RFCg~CG~~~~~~~~g~~~~C~~cg~~~ 139 (279)
T COG2816 109 RSHRFCGRCGTKTYPREGGWARVCPKCGHEH 139 (279)
T ss_pred hhCcCCCCCCCcCccccCceeeeCCCCCCcc
Confidence 4678888887665222 23788887554
No 193
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.54 E-value=20 Score=31.66 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=15.0
Q ss_pred ccccCCCCccchhhHHhh
Q 030551 89 MVLPNCCHAMCIKCYRNW 106 (175)
Q Consensus 89 ~~~~~C~H~fc~~Ci~~w 106 (175)
.+.-.|||.||..|..+|
T Consensus 179 ~v~C~~g~~FC~~C~~~~ 196 (444)
T KOG1815|consen 179 EVDCGCGHEFCFACGEES 196 (444)
T ss_pred ceeCCCCchhHhhccccc
Confidence 566679999999998776
No 194
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=31.88 E-value=28 Score=34.91 Aligned_cols=45 Identities=20% Similarity=0.480 Sum_probs=30.0
Q ss_pred CcceecccCCCCccccCCCCcc-----chhhHHhhcCC---CCCCcccccccc
Q 030551 77 DECGICLEPCTKMVLPNCCHAM-----CIKCYRNWNTK---SESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~~C~H~f-----c~~Ci~~w~~~---~~~CP~CR~~i~ 121 (175)
..|+-|-........+.||+.. |..|-.+.... ...||.|..++.
T Consensus 668 rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv 720 (1337)
T PRK14714 668 RRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELT 720 (1337)
T ss_pred EECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccc
Confidence 6888888765556677788653 88887653211 237888877665
No 195
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=31.79 E-value=19 Score=27.21 Aligned_cols=23 Identities=30% Similarity=0.667 Sum_probs=15.0
Q ss_pred CCCccchhhHHhhcCCC-----------CCCcccccccc
Q 030551 94 CCHAMCIKCYRNWNTKS-----------ESCPFCRGSMK 121 (175)
Q Consensus 94 C~H~fc~~Ci~~w~~~~-----------~~CP~CR~~i~ 121 (175)
+||.| ..|...+ -+||+|-..-.
T Consensus 10 ~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~~V 43 (148)
T PF06676_consen 10 NGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGSTEV 43 (148)
T ss_pred CCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCCeE
Confidence 68888 5564322 28999966543
No 196
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=31.79 E-value=8.3 Score=26.91 Aligned_cols=44 Identities=25% Similarity=0.627 Sum_probs=12.4
Q ss_pred CcceecccCCC--CccccCC--CCccchhhHHhh---cCC-CCCCcccccccc
Q 030551 77 DECGICLEPCT--KMVLPNC--CHAMCIKCYRNW---NTK-SESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~--~~~~~~C--~H~fc~~Ci~~w---~~~-~~~CP~CR~~i~ 121 (175)
..|+||-+.+. +.....| ||.| ..|.... ... -..|+.|....-
T Consensus 15 E~C~~C~~~i~~~~~~~~~C~~GH~w-~RC~lT~l~i~~~~~r~C~~C~~~~l 66 (99)
T PF12660_consen 15 EKCPICGAPIPFDDLDEAQCENGHVW-PRCALTFLPIQTPGVRVCPVCGRRAL 66 (99)
T ss_dssp --------------SSEEE-TTS-EE-EB-SSS-SBS-SS-EEE-TTT--EEE
T ss_pred ccccccccccccCCcCEeECCCCCEE-eeeeeeeeeeccCCeeEcCCCCCEEe
Confidence 68999988654 3333335 8987 3444333 221 148999976553
No 197
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=31.54 E-value=22 Score=31.90 Aligned_cols=32 Identities=19% Similarity=0.452 Sum_probs=18.7
Q ss_pred CCCcceecccCCCCc----cccCCC-Ccc-chhhHHhh
Q 030551 75 REDECGICLEPCTKM----VLPNCC-HAM-CIKCYRNW 106 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~----~~~~C~-H~f-c~~Ci~~w 106 (175)
+..-|+-|++.+... ....|. +.| |..|....
T Consensus 25 ~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L 62 (483)
T PF05502_consen 25 DSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPL 62 (483)
T ss_pred ceeECccccccCChhhheeccceeccccccCCCCCCcc
Confidence 346788888776542 223465 555 66666544
No 198
>PRK11595 DNA utilization protein GntX; Provisional
Probab=30.72 E-value=50 Score=26.21 Aligned_cols=37 Identities=27% Similarity=0.577 Sum_probs=17.0
Q ss_pred cceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccc
Q 030551 78 ECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGS 119 (175)
Q Consensus 78 ~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~ 119 (175)
.|.+|-..+... .+..|..|...+......||.|-.+
T Consensus 7 ~C~~C~~~~~~~-----~~~lC~~C~~~l~~~~~~C~~Cg~~ 43 (227)
T PRK11595 7 LCWLCRMPLALS-----HWGICSVCSRALRTLKTCCPQCGLP 43 (227)
T ss_pred cCccCCCccCCC-----CCcccHHHHhhCCcccCcCccCCCc
Confidence 466666543211 1235666655542222345555443
No 199
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=30.71 E-value=12 Score=28.30 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=11.2
Q ss_pred CCCCCccccccccc
Q 030551 109 KSESCPFCRGSMKR 122 (175)
Q Consensus 109 ~~~~CP~CR~~i~~ 122 (175)
....||.|..++..
T Consensus 127 ~~F~Cp~Cg~~L~~ 140 (158)
T TIGR00373 127 LNFTCPRCGAMLDY 140 (158)
T ss_pred cCCcCCCCCCEeee
Confidence 46799999998764
No 200
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=30.62 E-value=44 Score=18.78 Aligned_cols=20 Identities=30% Similarity=0.846 Sum_probs=10.9
Q ss_pred cchhhHHhhcCCCC--------CCcccc
Q 030551 98 MCIKCYRNWNTKSE--------SCPFCR 117 (175)
Q Consensus 98 fc~~Ci~~w~~~~~--------~CP~CR 117 (175)
.|.+|..++..... +|+.|-
T Consensus 1 lC~~C~~Ey~~p~~RR~~~~~isC~~CG 28 (35)
T PF07503_consen 1 LCDDCLKEYFDPSNRRFHYQFISCTNCG 28 (35)
T ss_dssp --HHHHHHHCSTTSTTTT-TT--BTTCC
T ss_pred CCHHHHHHHcCCCCCcccCcCccCCCCC
Confidence 47788887743211 788884
No 201
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=28.78 E-value=31 Score=21.87 Aligned_cols=13 Identities=31% Similarity=0.989 Sum_probs=10.1
Q ss_pred CCCCCcccccccc
Q 030551 109 KSESCPFCRGSMK 121 (175)
Q Consensus 109 ~~~~CP~CR~~i~ 121 (175)
....||+|.++..
T Consensus 38 ~~p~CPlC~s~M~ 50 (59)
T PF14169_consen 38 EEPVCPLCKSPMV 50 (59)
T ss_pred CCccCCCcCCccc
Confidence 3469999988864
No 202
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=28.48 E-value=28 Score=24.44 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=10.2
Q ss_pred CCCCccccccccccc
Q 030551 110 SESCPFCRGSMKRVN 124 (175)
Q Consensus 110 ~~~CP~CR~~i~~~~ 124 (175)
.+.||.||+....+.
T Consensus 6 ~~~C~~c~ka~~~L~ 20 (111)
T cd03036 6 YPKCSTCRKAKKWLD 20 (111)
T ss_pred CCCCHHHHHHHHHHH
Confidence 457888887766443
No 203
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.14 E-value=23 Score=24.57 Aligned_cols=11 Identities=36% Similarity=1.208 Sum_probs=9.8
Q ss_pred ccchhhHHhhc
Q 030551 97 AMCIKCYRNWN 107 (175)
Q Consensus 97 ~fc~~Ci~~w~ 107 (175)
.||..|+..|.
T Consensus 42 gFCRNCLs~Wy 52 (104)
T COG3492 42 GFCRNCLSNWY 52 (104)
T ss_pred HHHHHHHHHHH
Confidence 49999999995
No 204
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=27.20 E-value=50 Score=19.73 Aligned_cols=30 Identities=17% Similarity=0.344 Sum_probs=23.4
Q ss_pred cceecccCCCCccccCCCCccchhhHHhhcC
Q 030551 78 ECGICLEPCTKMVLPNCCHAMCIKCYRNWNT 108 (175)
Q Consensus 78 ~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~ 108 (175)
.|.||-.....++.. .|+-.|.+|-.+...
T Consensus 1 ~CiiC~~~~~~GI~I-~~~fIC~~CE~~iv~ 30 (46)
T PF10764_consen 1 KCIICGKEKEEGIHI-YGKFICSDCEKEIVN 30 (46)
T ss_pred CeEeCCCcCCCCEEE-ECeEehHHHHHHhcc
Confidence 488898888877777 888889999877543
No 205
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=26.31 E-value=19 Score=27.87 Aligned_cols=15 Identities=20% Similarity=0.519 Sum_probs=11.8
Q ss_pred CCCCCCccccccccc
Q 030551 108 TKSESCPFCRGSMKR 122 (175)
Q Consensus 108 ~~~~~CP~CR~~i~~ 122 (175)
.....||.|..++..
T Consensus 134 ~~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 134 EYGFRCPQCGEMLEE 148 (178)
T ss_pred hcCCcCCCCCCCCee
Confidence 456799999998864
No 206
>PF15616 TerY-C: TerY-C metal binding domain
Probab=25.91 E-value=41 Score=24.86 Aligned_cols=44 Identities=23% Similarity=0.478 Sum_probs=31.6
Q ss_pred CCCCCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
+.....||-|-..+--.+- .||+.||..= ....+||-|......
T Consensus 74 L~g~PgCP~CGn~~~fa~C-~CGkl~Ci~g-----~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 74 LIGAPGCPHCGNQYAFAVC-GCGKLFCIDG-----EGEVTCPWCGNEGSF 117 (131)
T ss_pred hcCCCCCCCCcChhcEEEe-cCCCEEEeCC-----CCCEECCCCCCeeee
Confidence 4455889999887666666 4999987542 235589999887764
No 207
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=25.91 E-value=6.2 Score=24.14 Aligned_cols=17 Identities=18% Similarity=0.792 Sum_probs=10.9
Q ss_pred CCCCcccccccccccCC
Q 030551 110 SESCPFCRGSMKRVNSE 126 (175)
Q Consensus 110 ~~~CP~CR~~i~~~~~~ 126 (175)
...||.|+.....+...
T Consensus 6 ~~~C~~C~~~~~~L~~~ 22 (60)
T PF00462_consen 6 KPGCPYCKKAKEFLDEK 22 (60)
T ss_dssp STTSHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHHHc
Confidence 45899997766544433
No 208
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=25.25 E-value=18 Score=21.72 Aligned_cols=35 Identities=20% Similarity=0.568 Sum_probs=20.4
Q ss_pred ceecccCCCC--ccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 79 CGICLEPCTK--MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 79 C~IC~~~~~~--~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
|.-|-..+.. .++..-+..||..|. .|-.|+.++.
T Consensus 1 C~~C~~~I~~~~~~~~~~~~~~H~~Cf--------~C~~C~~~l~ 37 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKAMGKFWHPECF--------KCSKCGKPLN 37 (58)
T ss_dssp BTTTSSBESSSSEEEEETTEEEETTTS--------BETTTTCBTT
T ss_pred CCCCCCCccCcEEEEEeCCcEEEcccc--------ccCCCCCccC
Confidence 4445555443 222246667777775 7777777765
No 209
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.45 E-value=30 Score=25.54 Aligned_cols=22 Identities=36% Similarity=0.872 Sum_probs=14.4
Q ss_pred ccchhhHHhhcCCCCCCcccccccc
Q 030551 97 AMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 97 ~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
.||.+|-..-+ ..||.|..++.
T Consensus 29 afcskcgeati---~qcp~csasir 50 (160)
T COG4306 29 AFCSKCGEATI---TQCPICSASIR 50 (160)
T ss_pred HHHhhhchHHH---hcCCccCCccc
Confidence 47888865433 26888877764
No 210
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=24.38 E-value=43 Score=27.59 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=31.4
Q ss_pred CcceecccCCCC-ccccCCCCccchhhHHhhcCC--CCCCcccccc
Q 030551 77 DECGICLEPCTK-MVLPNCCHAMCIKCYRNWNTK--SESCPFCRGS 119 (175)
Q Consensus 77 ~~C~IC~~~~~~-~~~~~C~H~fc~~Ci~~w~~~--~~~CP~CR~~ 119 (175)
+.|||=..++.. .+...|||.|=.+-|.+.+.. .-.||+=-.+
T Consensus 177 ~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 177 NRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred ccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 789987666665 455589999999999888655 3367765443
No 211
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=24.31 E-value=41 Score=31.41 Aligned_cols=44 Identities=18% Similarity=0.428 Sum_probs=21.8
Q ss_pred cceecccCCCC--ccccCCCCc----cchhhHHhhcCCCCCCcccccccc
Q 030551 78 ECGICLEPCTK--MVLPNCCHA----MCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 78 ~C~IC~~~~~~--~~~~~C~H~----fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
.|+-|-..... .....||.. .|..|-..--...+-||.|-.++.
T Consensus 3 ~Cp~Cg~~n~~~akFC~~CG~~l~~~~Cp~CG~~~~~~~~fC~~CG~~~~ 52 (645)
T PRK14559 3 ICPQCQFENPNNNRFCQKCGTSLTHKPCPQCGTEVPVDEAHCPNCGAETG 52 (645)
T ss_pred cCCCCCCcCCCCCccccccCCCCCCCcCCCCCCCCCcccccccccCCccc
Confidence 35555443322 333344433 355555444444556777766654
No 212
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=23.86 E-value=46 Score=22.95 Aligned_cols=36 Identities=22% Similarity=0.584 Sum_probs=26.8
Q ss_pred CCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCccccccc
Q 030551 76 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSM 120 (175)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i 120 (175)
...|.||-..... =||.||..|.- ....|.+|-..+
T Consensus 44 ~~~C~~CK~~v~q-----~g~~YCq~CAY----kkGiCamCGKki 79 (90)
T PF10235_consen 44 SSKCKICKTKVHQ-----PGAKYCQTCAY----KKGICAMCGKKI 79 (90)
T ss_pred Ccccccccccccc-----CCCccChhhhc----ccCcccccCCee
Confidence 3579999876432 47889999973 356999997776
No 213
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=23.70 E-value=37 Score=17.63 Aligned_cols=10 Identities=30% Similarity=0.929 Sum_probs=7.6
Q ss_pred CCcccccccc
Q 030551 112 SCPFCRGSMK 121 (175)
Q Consensus 112 ~CP~CR~~i~ 121 (175)
.||+|.+.+.
T Consensus 3 ~CPiC~~~v~ 12 (26)
T smart00734 3 QCPVCFREVP 12 (26)
T ss_pred cCCCCcCccc
Confidence 6999977663
No 214
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=23.70 E-value=80 Score=26.50 Aligned_cols=46 Identities=20% Similarity=0.436 Sum_probs=31.4
Q ss_pred CCCCcceecccCCCCccc----cCCCCc--cchhhHHhhcCCCCCCcccccc
Q 030551 74 EREDECGICLEPCTKMVL----PNCCHA--MCIKCYRNWNTKSESCPFCRGS 119 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~----~~C~H~--fc~~Ci~~w~~~~~~CP~CR~~ 119 (175)
+.-..||+|-......++ +.-|-. -|.-|...|...+.+|-.|-..
T Consensus 183 e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR~KC~nC~~t 234 (308)
T COG3058 183 ESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVRVKCSNCEQS 234 (308)
T ss_pred cccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHHHHhcccccc
Confidence 445689999887654111 223333 4999999997777789888543
No 215
>PF14369 zf-RING_3: zinc-finger
Probab=23.38 E-value=28 Score=19.51 Aligned_cols=24 Identities=33% Similarity=0.836 Sum_probs=14.0
Q ss_pred ccchhhHHhhc----CCCC-CCccccccc
Q 030551 97 AMCIKCYRNWN----TKSE-SCPFCRGSM 120 (175)
Q Consensus 97 ~fc~~Ci~~w~----~~~~-~CP~CR~~i 120 (175)
-||..|-+... .... .||.|...+
T Consensus 3 ywCh~C~~~V~~~~~~~~~~~CP~C~~gF 31 (35)
T PF14369_consen 3 YWCHQCNRFVRIAPSPDSDVACPRCHGGF 31 (35)
T ss_pred EeCccCCCEeEeCcCCCCCcCCcCCCCcE
Confidence 36777764442 1223 499997665
No 216
>PLN02248 cellulose synthase-like protein
Probab=22.86 E-value=51 Score=32.68 Aligned_cols=29 Identities=28% Similarity=0.736 Sum_probs=24.7
Q ss_pred CCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 93 NCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 93 ~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
.|++..|.+|...-+.....||-|+.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYK 177 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCccccc
Confidence 47778899999888877889999988874
No 217
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=22.82 E-value=57 Score=31.46 Aligned_cols=30 Identities=20% Similarity=0.523 Sum_probs=22.5
Q ss_pred CcceecccCCCC-------cc--ccCCCCccchhhHHhh
Q 030551 77 DECGICLEPCTK-------MV--LPNCCHAMCIKCYRNW 106 (175)
Q Consensus 77 ~~C~IC~~~~~~-------~~--~~~C~H~fc~~Ci~~w 106 (175)
..|..|...|.. +. .-.||..||..|-...
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnR 499 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKR 499 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCc
Confidence 579999998852 11 3469999999998654
No 218
>PRK02935 hypothetical protein; Provisional
Probab=21.42 E-value=38 Score=24.13 Aligned_cols=17 Identities=12% Similarity=0.477 Sum_probs=13.6
Q ss_pred hhcCCCCCCcccccccc
Q 030551 105 NWNTKSESCPFCRGSMK 121 (175)
Q Consensus 105 ~w~~~~~~CP~CR~~i~ 121 (175)
+.+.+.+.|..|++|++
T Consensus 81 KmLGrvD~CM~C~~PLT 97 (110)
T PRK02935 81 KMLGRVDACMHCNQPLT 97 (110)
T ss_pred hhccceeecCcCCCcCC
Confidence 34667779999999997
No 219
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=21.23 E-value=43 Score=18.75 Aligned_cols=8 Identities=25% Similarity=0.679 Sum_probs=3.6
Q ss_pred cceecccC
Q 030551 78 ECGICLEP 85 (175)
Q Consensus 78 ~C~IC~~~ 85 (175)
+|+-|...
T Consensus 4 ~Cp~C~~~ 11 (36)
T PF13717_consen 4 TCPNCQAK 11 (36)
T ss_pred ECCCCCCE
Confidence 34445443
No 220
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=21.01 E-value=44 Score=21.49 Aligned_cols=22 Identities=32% Similarity=0.780 Sum_probs=13.1
Q ss_pred cchhhHHhhcCCCCCCcccccc
Q 030551 98 MCIKCYRNWNTKSESCPFCRGS 119 (175)
Q Consensus 98 fc~~Ci~~w~~~~~~CP~CR~~ 119 (175)
.|..|-.-.-.....||.|-.+
T Consensus 6 AC~~Ck~l~~~d~e~CP~Cgs~ 27 (64)
T COG2093 6 ACKNCKRLTPEDTEICPVCGST 27 (64)
T ss_pred HHhhccccCCCCCccCCCCCCc
Confidence 3666643322334469999776
No 221
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=21.01 E-value=37 Score=24.25 Aligned_cols=24 Identities=29% Similarity=0.653 Sum_probs=14.0
Q ss_pred cchhhHHhhcC--CCCCCcccccccc
Q 030551 98 MCIKCYRNWNT--KSESCPFCRGSMK 121 (175)
Q Consensus 98 fc~~Ci~~w~~--~~~~CP~CR~~i~ 121 (175)
+|.+|-..|.. ....||.|.+.-.
T Consensus 72 ~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (115)
T TIGR00100 72 ECEDCSEEVSPEIDLYRCPKCHGIML 97 (115)
T ss_pred EcccCCCEEecCCcCccCcCCcCCCc
Confidence 45555544422 2457999987543
No 222
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=20.42 E-value=95 Score=21.38 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=21.9
Q ss_pred CCCcceecccCCCC---ccccCCCCccchhhHHhh
Q 030551 75 REDECGICLEPCTK---MVLPNCCHAMCIKCYRNW 106 (175)
Q Consensus 75 ~~~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w 106 (175)
....|.||...... -..+.|...||..|....
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHHHHC
Confidence 35789999987322 222347779999998664
No 223
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=20.37 E-value=45 Score=18.72 Aligned_cols=8 Identities=38% Similarity=0.987 Sum_probs=4.3
Q ss_pred CCcccccc
Q 030551 112 SCPFCRGS 119 (175)
Q Consensus 112 ~CP~CR~~ 119 (175)
.||.|+..
T Consensus 27 rC~~C~~~ 34 (37)
T PF13719_consen 27 RCPKCGHV 34 (37)
T ss_pred ECCCCCcE
Confidence 45655544
No 224
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=20.23 E-value=46 Score=22.76 Aligned_cols=15 Identities=13% Similarity=0.430 Sum_probs=10.5
Q ss_pred CCCCccccccccccc
Q 030551 110 SESCPFCRGSMKRVN 124 (175)
Q Consensus 110 ~~~CP~CR~~i~~~~ 124 (175)
...||.|+.....+.
T Consensus 6 ~~~C~~c~ka~~~L~ 20 (105)
T cd02977 6 NPNCSTSRKALAWLE 20 (105)
T ss_pred CCCCHHHHHHHHHHH
Confidence 457899987766444
No 225
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=20.20 E-value=41 Score=27.88 Aligned_cols=45 Identities=20% Similarity=0.444 Sum_probs=29.7
Q ss_pred CcceecccCCCC-------ccccCCCCccchhhHHhh-cC--------CCCCCcccccccc
Q 030551 77 DECGICLEPCTK-------MVLPNCCHAMCIKCYRNW-NT--------KSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~-------~~~~~C~H~fc~~Ci~~w-~~--------~~~~CP~CR~~i~ 121 (175)
.+|.+|...+.. -..+.|+-.+|..|+... +. ....||.|+.-+.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 589999877621 223347777889999663 21 2338999988553
No 226
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.19 E-value=31 Score=30.36 Aligned_cols=33 Identities=18% Similarity=0.410 Sum_probs=24.3
Q ss_pred CCCCcceecccCCCC------ccccCCCCccchhhHHhh
Q 030551 74 EREDECGICLEPCTK------MVLPNCCHAMCIKCYRNW 106 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~------~~~~~C~H~fc~~Ci~~w 106 (175)
.....||-|.-.+.. ...+.|+|.||+-|..-.
T Consensus 366 ~N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l 404 (445)
T KOG1814|consen 366 SNSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELL 404 (445)
T ss_pred hcCCCCCcccceeecCCCccceeeccccccceeehhhhc
Confidence 344678888766543 667789999999998554
Done!