Query 030551
Match_columns 175
No_of_seqs 220 out of 1997
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 01:17:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030551.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030551hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d8t_A Dactylidin, ring finger 99.5 3.1E-14 1E-18 93.2 3.9 50 73-122 12-61 (71)
2 2kiz_A E3 ubiquitin-protein li 99.5 3.5E-14 1.2E-18 92.2 4.0 53 73-125 11-66 (69)
3 3ng2_A RNF4, snurf, ring finge 99.5 9.4E-15 3.2E-19 95.2 1.1 50 73-122 7-63 (71)
4 2djb_A Polycomb group ring fin 99.5 3.8E-14 1.3E-18 93.0 4.0 51 72-122 11-62 (72)
5 1iym_A EL5; ring-H2 finger, ub 99.4 5.7E-14 2E-18 87.1 4.1 48 74-121 3-54 (55)
6 2csy_A Zinc finger protein 183 99.4 4.8E-14 1.7E-18 94.4 3.8 50 72-121 11-60 (81)
7 4ayc_A E3 ubiquitin-protein li 99.4 4.6E-14 1.6E-18 103.9 3.1 47 76-122 53-99 (138)
8 2ecy_A TNF receptor-associated 99.4 9.4E-14 3.2E-18 89.5 4.1 50 73-122 12-62 (66)
9 2ysl_A Tripartite motif-contai 99.4 1.7E-13 6E-18 89.6 5.4 51 72-122 16-69 (73)
10 2ecn_A Ring finger protein 141 99.4 8.4E-14 2.9E-18 90.6 3.8 49 73-122 12-60 (70)
11 2ea6_A Ring finger protein 4; 99.4 3E-14 1E-18 92.1 1.6 49 73-121 12-67 (69)
12 2yur_A Retinoblastoma-binding 99.4 8.1E-14 2.8E-18 92.0 3.4 50 72-121 11-63 (74)
13 1chc_A Equine herpes virus-1 r 99.4 8.4E-14 2.9E-18 90.0 3.4 49 75-123 4-53 (68)
14 2egp_A Tripartite motif-contai 99.4 1.8E-13 6.1E-18 90.8 4.6 51 72-122 8-65 (79)
15 1t1h_A Gspef-atpub14, armadill 99.4 1.1E-13 3.6E-18 92.0 3.4 49 73-121 5-54 (78)
16 2ecm_A Ring finger and CHY zin 99.4 7E-14 2.4E-18 86.6 2.3 47 75-121 4-54 (55)
17 2ect_A Ring finger protein 126 99.4 2E-13 6.7E-18 90.7 4.4 50 73-122 12-64 (78)
18 2ct2_A Tripartite motif protei 99.4 3.6E-13 1.2E-17 91.0 5.5 51 72-122 11-68 (88)
19 2ecl_A Ring-box protein 2; RNF 99.4 1.8E-13 6E-18 92.0 3.6 48 75-122 14-76 (81)
20 2ep4_A Ring finger protein 24; 99.4 1.7E-13 5.8E-18 90.1 3.5 51 72-122 11-64 (74)
21 2xeu_A Ring finger protein 4; 99.4 2.8E-14 9.5E-19 90.9 -0.4 48 75-122 2-56 (64)
22 2l0b_A E3 ubiquitin-protein li 99.4 1.7E-13 5.9E-18 94.0 2.6 49 73-121 37-88 (91)
23 1x4j_A Ring finger protein 38; 99.4 1.1E-13 3.6E-18 91.4 1.0 49 73-121 20-71 (75)
24 3ztg_A E3 ubiquitin-protein li 99.3 3E-13 1E-17 92.5 3.1 50 72-121 9-61 (92)
25 2ecv_A Tripartite motif-contai 99.3 9.2E-13 3.1E-17 88.2 5.4 51 72-122 15-71 (85)
26 2ecw_A Tripartite motif-contai 99.3 5.4E-13 1.8E-17 89.3 4.2 50 73-122 16-71 (85)
27 2ecj_A Tripartite motif-contai 99.3 1.3E-12 4.6E-17 81.5 5.6 45 72-116 11-58 (58)
28 1v87_A Deltex protein 2; ring- 99.3 4.6E-13 1.6E-17 95.1 3.9 47 76-122 25-94 (114)
29 3lrq_A E3 ubiquitin-protein li 99.3 2.4E-13 8.2E-18 94.8 1.9 46 76-121 22-69 (100)
30 2ysj_A Tripartite motif-contai 99.3 9.4E-13 3.2E-17 83.9 4.0 45 72-116 16-63 (63)
31 2y43_A E3 ubiquitin-protein li 99.3 8.2E-13 2.8E-17 91.6 3.1 48 75-122 21-69 (99)
32 2ckl_A Polycomb group ring fin 99.3 6.3E-13 2.1E-17 93.7 2.5 49 74-122 13-62 (108)
33 3fl2_A E3 ubiquitin-protein li 99.3 7.3E-13 2.5E-17 95.5 2.5 47 75-121 51-98 (124)
34 2kr4_A Ubiquitin conjugation f 99.3 1.4E-12 4.8E-17 88.5 3.5 50 72-121 10-59 (85)
35 3dpl_R Ring-box protein 1; ubi 99.3 1.7E-12 5.8E-17 91.7 3.9 47 75-121 36-100 (106)
36 1g25_A CDK-activating kinase a 99.3 9.4E-13 3.2E-17 84.5 2.0 47 76-122 3-55 (65)
37 2kre_A Ubiquitin conjugation f 99.3 2.5E-12 8.5E-17 89.9 4.3 50 72-121 25-74 (100)
38 3l11_A E3 ubiquitin-protein li 99.3 7.2E-13 2.5E-17 94.3 1.2 49 74-122 13-62 (115)
39 1e4u_A Transcriptional repress 99.3 1.2E-11 4.1E-16 82.7 7.0 50 73-122 8-62 (78)
40 1jm7_A BRCA1, breast cancer ty 99.3 2.3E-12 7.8E-17 90.9 3.2 46 77-122 22-70 (112)
41 1wgm_A Ubiquitin conjugation f 99.3 5.9E-12 2E-16 87.7 5.3 49 73-121 19-68 (98)
42 4ap4_A E3 ubiquitin ligase RNF 99.3 1E-12 3.5E-17 94.8 1.4 49 75-123 6-61 (133)
43 1bor_A Transcription factor PM 99.2 4E-12 1.4E-16 79.5 3.1 45 74-121 4-48 (56)
44 1z6u_A NP95-like ring finger p 99.2 2.9E-12 9.9E-17 95.7 2.5 48 75-122 77-125 (150)
45 3hct_A TNF receptor-associated 99.2 1.8E-12 6.3E-17 92.8 1.3 51 72-122 14-65 (118)
46 2vje_A E3 ubiquitin-protein li 99.2 3.2E-12 1.1E-16 82.2 0.9 48 75-122 7-57 (64)
47 1rmd_A RAG1; V(D)J recombinati 99.2 5.6E-12 1.9E-16 89.8 1.9 48 75-122 22-70 (116)
48 2ckl_B Ubiquitin ligase protei 99.2 6.3E-12 2.2E-16 94.8 2.2 48 74-121 52-101 (165)
49 1jm7_B BARD1, BRCA1-associated 99.2 1.2E-11 4.1E-16 88.4 3.5 44 76-121 22-66 (117)
50 3knv_A TNF receptor-associated 99.2 4.2E-12 1.4E-16 93.9 0.8 50 72-121 27-77 (141)
51 4a0k_B E3 ubiquitin-protein li 99.1 4.8E-12 1.6E-16 90.9 0.6 47 75-121 47-111 (117)
52 2vje_B MDM4 protein; proto-onc 99.1 4.9E-12 1.7E-16 81.1 0.5 48 75-122 6-56 (63)
53 4ic3_A E3 ubiquitin-protein li 99.1 1.6E-11 5.4E-16 81.0 2.3 43 76-122 24-67 (74)
54 2c2l_A CHIP, carboxy terminus 99.1 2.6E-11 8.9E-16 97.5 3.3 50 72-121 204-254 (281)
55 4ap4_A E3 ubiquitin ligase RNF 99.1 6E-12 2E-16 90.8 -0.8 49 74-122 70-125 (133)
56 2y1n_A E3 ubiquitin-protein li 99.1 2.8E-11 9.6E-16 102.7 2.9 47 76-122 332-379 (389)
57 3hcs_A TNF receptor-associated 99.0 4.2E-11 1.5E-15 90.6 1.3 51 72-122 14-65 (170)
58 2ecg_A Baculoviral IAP repeat- 99.0 1.5E-10 5E-15 76.4 3.8 42 77-122 26-68 (75)
59 2ea5_A Cell growth regulator w 99.0 2.4E-10 8.1E-15 74.3 4.5 46 73-122 12-58 (68)
60 2d8s_A Cellular modulator of i 99.0 1.1E-10 3.9E-15 78.3 2.9 49 73-121 12-69 (80)
61 2yu4_A E3 SUMO-protein ligase 99.0 8E-11 2.7E-15 81.1 1.3 48 74-121 5-62 (94)
62 2ct0_A Non-SMC element 1 homol 99.0 9.6E-10 3.3E-14 72.6 5.8 49 74-122 13-64 (74)
63 2f42_A STIP1 homology and U-bo 98.9 2.1E-10 7.1E-15 88.0 2.2 50 72-121 102-152 (179)
64 2yho_A E3 ubiquitin-protein li 98.9 3E-10 1E-14 75.9 2.0 43 77-123 19-62 (79)
65 3htk_C E3 SUMO-protein ligase 98.8 2.3E-09 7.8E-14 86.4 3.8 49 73-121 178-231 (267)
66 3t6p_A Baculoviral IAP repeat- 98.8 1.5E-09 5E-14 91.2 2.0 44 75-122 294-338 (345)
67 2bay_A PRE-mRNA splicing facto 98.7 4E-09 1.4E-13 67.0 0.7 46 77-122 4-50 (61)
68 1wim_A KIAA0161 protein; ring 98.6 8.9E-09 3E-13 70.5 1.6 45 75-119 4-61 (94)
69 3k1l_B Fancl; UBC, ring, RWD, 98.6 1.2E-08 4.1E-13 85.1 1.4 49 73-121 305-372 (381)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.4 7.8E-08 2.7E-12 60.8 2.5 48 74-121 4-58 (60)
71 3vk6_A E3 ubiquitin-protein li 98.4 7.6E-08 2.6E-12 66.5 2.2 47 78-124 3-51 (101)
72 3nw0_A Non-structural maintena 97.7 2.2E-05 7.4E-10 62.6 4.0 48 75-122 179-229 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 96.2 0.0027 9.2E-08 43.2 2.6 33 75-107 2-38 (101)
74 2ko5_A Ring finger protein Z; 95.0 0.013 4.3E-07 39.8 2.5 48 74-122 26-73 (99)
75 1weo_A Cellulose synthase, cat 92.9 0.51 1.7E-05 31.6 7.0 50 75-124 15-72 (93)
76 2lri_C Autoimmune regulator; Z 92.9 0.12 4E-06 32.7 3.8 45 75-119 11-59 (66)
77 3u5n_A E3 ubiquitin-protein li 89.8 0.28 9.6E-06 37.5 3.8 47 74-120 5-55 (207)
78 3m62_A Ubiquitin conjugation f 89.5 0.2 6.9E-06 46.8 3.2 50 72-121 887-937 (968)
79 3o36_A Transcription intermedi 89.5 0.41 1.4E-05 35.9 4.4 46 75-120 3-52 (184)
80 2l5u_A Chromodomain-helicase-D 87.6 0.57 1.9E-05 28.8 3.4 46 73-118 8-57 (61)
81 2cs3_A Protein C14ORF4, MY039 87.5 0.34 1.2E-05 31.9 2.4 34 74-107 13-50 (93)
82 2yql_A PHD finger protein 21A; 87.5 0.22 7.4E-06 30.1 1.4 46 73-118 6-55 (56)
83 1mm2_A MI2-beta; PHD, zinc fin 87.4 0.41 1.4E-05 29.5 2.6 47 74-120 7-57 (61)
84 1wil_A KIAA1045 protein; ring 83.6 2 6.9E-05 28.4 4.7 33 73-106 12-47 (89)
85 2zet_C Melanophilin; complex, 82.6 0.12 4.1E-06 38.1 -1.7 45 75-120 67-118 (153)
86 1xwh_A Autoimmune regulator; P 81.9 0.55 1.9E-05 29.3 1.4 46 74-119 6-55 (66)
87 1wd2_A Ariadne-1 protein homol 81.1 0.52 1.8E-05 29.0 1.1 34 77-110 7-48 (60)
88 2puy_A PHD finger protein 21A; 80.1 0.56 1.9E-05 28.6 1.0 47 75-121 4-54 (60)
89 2lbm_A Transcriptional regulat 79.8 2 6.9E-05 31.1 4.0 46 73-118 60-116 (142)
90 2ro1_A Transcription intermedi 79.0 5 0.00017 30.1 6.2 44 77-120 3-50 (189)
91 1fp0_A KAP-1 corepressor; PHD 78.8 2.9 9.9E-05 27.8 4.2 48 72-119 21-72 (88)
92 2l43_A N-teminal domain from h 78.2 1.8 6.1E-05 28.6 3.1 49 73-121 22-77 (88)
93 3ql9_A Transcriptional regulat 77.4 2.3 7.9E-05 30.3 3.7 47 73-119 54-111 (129)
94 2jmo_A Parkin; IBR, E3 ligase, 77.3 0.5 1.7E-05 30.7 0.1 20 93-114 55-74 (80)
95 1y02_A CARP2, FYVE-ring finger 77.0 0.48 1.6E-05 33.4 -0.1 45 75-119 18-66 (120)
96 2ysm_A Myeloid/lymphoid or mix 75.6 1.8 6.1E-05 29.5 2.6 44 74-117 5-55 (111)
97 1wfk_A Zinc finger, FYVE domai 73.0 2.1 7.1E-05 28.3 2.3 49 73-121 6-65 (88)
98 1we9_A PHD finger family prote 73.0 1.5 5.3E-05 26.8 1.6 46 74-119 4-58 (64)
99 1z60_A TFIIH basal transcripti 72.1 2.8 9.6E-05 25.7 2.6 40 77-116 16-58 (59)
100 2k16_A Transcription initiatio 71.7 1.3 4.5E-05 28.0 1.1 47 75-121 17-70 (75)
101 1z2q_A LM5-1; membrane protein 71.5 2.4 8.3E-05 27.6 2.3 33 74-106 19-55 (84)
102 2fiy_A Protein FDHE homolog; F 70.9 0.61 2.1E-05 38.2 -0.9 46 74-119 180-231 (309)
103 2yw8_A RUN and FYVE domain-con 70.6 2.3 7.8E-05 27.6 2.1 32 75-106 18-53 (82)
104 1x4u_A Zinc finger, FYVE domai 70.5 2.7 9.3E-05 27.3 2.4 32 74-105 12-47 (84)
105 1joc_A EEA1, early endosomal a 70.3 1.8 6.1E-05 30.5 1.6 31 76-106 69-103 (125)
106 2yt5_A Metal-response element- 70.2 1.3 4.6E-05 27.2 0.8 46 74-119 4-61 (66)
107 2e6r_A Jumonji/ARID domain-con 69.5 1.7 5.7E-05 29.0 1.2 50 70-119 10-66 (92)
108 2gmg_A Hypothetical protein PF 69.4 1.8 6.1E-05 29.8 1.4 27 89-120 68-94 (105)
109 2a20_A Regulating synaptic mem 68.1 1.1 3.9E-05 27.5 0.1 45 74-118 7-59 (62)
110 3t7l_A Zinc finger FYVE domain 67.7 2.3 7.7E-05 28.2 1.6 47 75-121 19-75 (90)
111 1f62_A Transcription factor WS 66.6 4.5 0.00015 23.4 2.6 41 78-118 2-49 (51)
112 2pv0_B DNA (cytosine-5)-methyl 65.0 4.5 0.00015 34.0 3.2 45 74-118 91-147 (386)
113 1vfy_A Phosphatidylinositol-3- 64.9 3.4 0.00011 26.1 1.9 29 77-105 12-44 (73)
114 2ct7_A Ring finger protein 31; 63.5 0.98 3.4E-05 29.6 -0.9 27 89-115 44-72 (86)
115 1dvp_A HRS, hepatocyte growth 62.4 2.9 9.9E-05 32.0 1.5 31 76-106 161-195 (220)
116 3zyq_A Hepatocyte growth facto 61.7 3.1 0.00011 32.1 1.6 31 76-106 164-198 (226)
117 1weu_A Inhibitor of growth fam 61.5 9 0.00031 25.4 3.6 45 75-120 35-86 (91)
118 1wen_A Inhibitor of growth fam 61.2 9.8 0.00034 23.9 3.6 46 74-120 14-66 (71)
119 3a1b_A DNA (cytosine-5)-methyl 59.2 5.3 0.00018 29.4 2.3 43 75-117 78-132 (159)
120 3i2d_A E3 SUMO-protein ligase 59.1 6.2 0.00021 33.0 3.0 45 77-121 250-299 (371)
121 2lv9_A Histone-lysine N-methyl 59.0 6.5 0.00022 26.3 2.6 42 76-118 28-75 (98)
122 1zbd_B Rabphilin-3A; G protein 58.6 4.1 0.00014 29.1 1.6 57 75-131 54-119 (134)
123 1x62_A C-terminal LIM domain p 58.3 10 0.00035 23.7 3.4 39 75-121 14-52 (79)
124 4fo9_A E3 SUMO-protein ligase 57.5 7 0.00024 32.5 3.1 46 76-121 215-265 (360)
125 2cor_A Pinch protein; LIM doma 56.8 12 0.00043 23.4 3.6 38 76-121 15-52 (79)
126 2d8v_A Zinc finger FYVE domain 56.7 4.6 0.00016 25.3 1.4 33 73-106 5-38 (67)
127 1wev_A Riken cDNA 1110020M19; 55.9 1.2 4.3E-05 29.3 -1.4 47 75-121 15-74 (88)
128 1wig_A KIAA1808 protein; LIM d 55.3 8.6 0.00029 23.7 2.6 37 77-121 6-42 (73)
129 3mpx_A FYVE, rhogef and PH dom 54.6 2.6 8.9E-05 35.2 0.0 46 75-120 374-430 (434)
130 4gne_A Histone-lysine N-methyl 54.1 12 0.0004 25.6 3.3 48 73-121 12-64 (107)
131 2ku3_A Bromodomain-containing 53.8 6.8 0.00023 24.7 1.9 47 73-119 13-66 (71)
132 1x64_A Alpha-actinin-2 associa 51.3 14 0.00048 23.6 3.3 40 74-121 23-62 (89)
133 2d8x_A Protein pinch; LIM doma 51.0 7.3 0.00025 23.6 1.7 38 76-121 5-42 (70)
134 1wyh_A SLIM 2, skeletal muscle 50.3 12 0.00039 22.7 2.6 37 77-121 6-44 (72)
135 2csz_A Synaptotagmin-like prot 48.1 5.6 0.00019 25.7 0.8 45 73-117 22-71 (76)
136 1x6a_A LIMK-2, LIM domain kina 47.5 9.9 0.00034 23.7 2.0 37 77-121 16-52 (81)
137 3fyb_A Protein of unknown func 46.9 6.7 0.00023 26.6 1.1 12 97-108 41-52 (104)
138 2o35_A Hypothetical protein DU 46.8 6.7 0.00023 26.6 1.1 11 97-107 42-52 (105)
139 3v43_A Histone acetyltransfera 46.5 9.6 0.00033 25.9 1.9 42 77-118 62-111 (112)
140 2dar_A PDZ and LIM domain prot 45.9 8.5 0.00029 24.7 1.5 39 75-121 24-62 (90)
141 3lqh_A Histone-lysine N-methyl 45.9 8.6 0.00029 28.8 1.7 44 77-120 3-64 (183)
142 2d8z_A Four and A half LIM dom 45.6 13 0.00044 22.4 2.3 37 77-121 6-42 (70)
143 1x4l_A Skeletal muscle LIM-pro 45.3 13 0.00044 22.6 2.3 37 77-121 6-46 (72)
144 1wew_A DNA-binding family prot 44.5 16 0.00055 23.1 2.7 45 74-119 14-72 (78)
145 2cur_A Skeletal muscle LIM-pro 44.3 11 0.00038 22.7 1.8 37 77-121 6-42 (69)
146 1m3v_A FLIN4, fusion of the LI 43.7 12 0.00042 25.5 2.1 45 77-121 33-80 (122)
147 3o70_A PHD finger protein 13; 43.0 11 0.00039 23.4 1.7 44 74-118 17-66 (68)
148 1wee_A PHD finger family prote 42.4 8.1 0.00028 24.1 0.9 45 74-119 14-66 (72)
149 1wem_A Death associated transc 42.1 14 0.00047 23.2 2.0 43 76-119 16-70 (76)
150 1nyp_A Pinch protein; LIM doma 41.5 8.2 0.00028 23.1 0.8 37 77-121 6-42 (66)
151 2vnf_A ING 4, P29ING4, inhibit 39.6 7.4 0.00025 23.6 0.4 43 75-118 9-58 (60)
152 2dlo_A Thyroid receptor-intera 39.4 8.7 0.0003 24.1 0.7 38 76-121 15-52 (81)
153 1loi_A Cyclic 3',5'-AMP specif 39.4 3 0.0001 20.6 -1.2 11 97-107 6-16 (26)
154 3c6w_A P28ING5, inhibitor of g 39.3 7.4 0.00025 23.5 0.3 43 75-118 8-57 (59)
155 1x68_A FHL5 protein; four-and- 37.7 10 0.00034 23.5 0.8 37 77-121 6-46 (76)
156 1x63_A Skeletal muscle LIM-pro 37.0 15 0.00051 22.9 1.6 37 77-121 16-54 (82)
157 2cuq_A Four and A half LIM dom 36.8 15 0.00052 22.7 1.6 37 77-121 16-52 (80)
158 2kwj_A Zinc finger protein DPF 36.2 16 0.00056 24.9 1.8 29 77-105 2-40 (114)
159 1v6g_A Actin binding LIM prote 36.2 11 0.00037 23.6 0.8 37 77-121 16-52 (81)
160 3ask_A E3 ubiquitin-protein li 35.8 17 0.00059 28.2 2.0 42 77-118 175-224 (226)
161 2ehe_A Four and A half LIM dom 35.5 21 0.00073 22.1 2.1 37 77-121 16-54 (82)
162 2kgg_A Histone demethylase jar 34.7 17 0.00058 21.1 1.4 40 78-117 4-52 (52)
163 2ri7_A Nucleosome-remodeling f 33.6 11 0.00036 27.5 0.5 45 74-119 6-59 (174)
164 1x61_A Thyroid receptor intera 33.3 28 0.00095 20.9 2.4 38 76-121 5-44 (72)
165 2xjy_A Rhombotin-2; oncoprotei 33.1 15 0.00053 25.0 1.2 46 76-121 29-77 (131)
166 3shb_A E3 ubiquitin-protein li 33.0 14 0.00048 23.6 0.9 41 78-118 28-76 (77)
167 2cu8_A Cysteine-rich protein 2 32.9 11 0.00039 23.2 0.4 38 76-121 9-47 (76)
168 1x3h_A Leupaxin; paxillin fami 32.4 13 0.00045 23.0 0.7 37 77-121 16-52 (80)
169 2jmi_A Protein YNG1, ING1 homo 32.2 17 0.00059 24.0 1.3 44 74-118 24-75 (90)
170 2jrp_A Putative cytoplasmic pr 31.8 4.4 0.00015 26.5 -1.7 40 77-121 3-42 (81)
171 1x4k_A Skeletal muscle LIM-pro 31.3 16 0.00054 22.1 0.9 37 77-121 6-44 (72)
172 2cup_A Skeletal muscle LIM-pro 31.0 26 0.00089 22.6 2.1 43 77-121 34-77 (101)
173 2lcq_A Putative toxin VAPC6; P 31.0 16 0.00056 26.3 1.1 28 90-123 134-161 (165)
174 2e6s_A E3 ubiquitin-protein li 30.7 21 0.00073 22.7 1.5 42 77-118 27-76 (77)
175 2dj7_A Actin-binding LIM prote 30.3 29 0.00098 21.7 2.1 39 75-121 14-53 (80)
176 2l3k_A Rhombotin-2, linker, LI 30.1 30 0.001 23.5 2.3 41 77-119 37-79 (123)
177 2xqn_T Testin, TESS; metal-bin 30.0 25 0.00086 23.8 1.9 43 77-121 31-74 (126)
178 1wep_A PHF8; structural genomi 29.4 43 0.0015 21.0 2.9 43 77-120 13-64 (79)
179 2co8_A NEDD9 interacting prote 29.1 53 0.0018 20.4 3.3 39 75-121 14-53 (82)
180 2jne_A Hypothetical protein YF 29.0 3.6 0.00012 27.9 -2.6 43 77-124 33-75 (101)
181 2l4z_A DNA endonuclease RBBP8, 28.3 31 0.0011 23.6 2.2 38 76-121 61-99 (123)
182 2vpb_A Hpygo1, pygopus homolog 28.1 28 0.00096 21.3 1.7 30 74-103 6-40 (65)
183 1g47_A Pinch protein; LIM doma 28.1 30 0.001 21.0 1.9 38 76-121 11-50 (77)
184 4g9i_A Hydrogenase maturation 27.1 21 0.00071 32.6 1.3 23 98-120 158-188 (772)
185 2rgt_A Fusion of LIM/homeobox 27.1 45 0.0015 23.9 2.9 44 76-121 33-76 (169)
186 3asl_A E3 ubiquitin-protein li 26.7 28 0.00094 21.6 1.5 41 78-118 20-68 (70)
187 3mjh_B Early endosome antigen 26.6 17 0.00058 19.6 0.4 11 111-121 6-16 (34)
188 1rut_X Flinc4, fusion protein 26.5 10 0.00035 28.0 -0.8 45 77-121 33-80 (188)
189 2kdx_A HYPA, hydrogenase/ureas 26.4 30 0.001 23.6 1.7 27 90-122 75-102 (119)
190 2jtn_A LIM domain-binding prot 25.9 38 0.0013 24.6 2.4 25 95-121 106-130 (182)
191 1j2o_A FLIN2, fusion of rhombo 25.2 28 0.00095 23.3 1.4 33 76-108 30-65 (114)
192 1iml_A CRIP, cysteine rich int 24.9 16 0.00056 22.4 0.1 40 77-118 28-69 (76)
193 2egq_A FHL1 protein; LIM domai 24.9 21 0.00071 21.9 0.6 37 77-121 16-57 (77)
194 3rdw_A Putative arsenate reduc 23.7 30 0.001 23.6 1.4 44 109-155 11-54 (121)
195 3ttc_A HYPF, transcriptional r 23.7 22 0.00075 31.9 0.8 23 98-120 69-99 (657)
196 2d8y_A Eplin protein; LIM doma 23.5 59 0.002 20.5 2.7 39 75-121 14-53 (91)
197 3vth_A Hydrogenase maturation 23.3 24 0.00083 32.2 1.0 23 98-120 163-193 (761)
198 3o7a_A PHD finger protein 13 v 23.2 22 0.00074 20.6 0.4 26 93-118 23-51 (52)
199 2g6q_A Inhibitor of growth pro 23.0 16 0.00056 22.2 -0.1 43 75-118 10-59 (62)
200 2jvx_A NF-kappa-B essential mo 22.0 20 0.00069 18.4 0.1 11 111-121 4-14 (28)
201 1l8d_A DNA double-strand break 21.0 24 0.00082 23.6 0.4 11 111-121 48-58 (112)
202 2rsd_A E3 SUMO-protein ligase 21.0 19 0.00065 22.1 -0.2 41 77-118 11-64 (68)
No 1
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.1e-14 Score=93.17 Aligned_cols=50 Identities=28% Similarity=0.668 Sum_probs=45.0
Q ss_pred CCCCCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
..+...|+||++.+.+++.++|||.||..|+.+|+.....||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34568999999999998888999999999999999888899999999863
No 2
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=3.5e-14 Score=92.19 Aligned_cols=53 Identities=25% Similarity=0.609 Sum_probs=44.0
Q ss_pred CCCCCcceecccCCCC---ccccCCCCccchhhHHhhcCCCCCCcccccccccccC
Q 030551 73 LEREDECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNS 125 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~~~~ 125 (175)
......|+||++.+.. ++.++|||.||..|+.+|+..+..||+||.++....+
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 4456789999998753 5667899999999999998888899999999875443
No 3
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.46 E-value=9.4e-15 Score=95.19 Aligned_cols=50 Identities=26% Similarity=0.742 Sum_probs=43.9
Q ss_pred CCCCCcceecccCCCCc-------cccCCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 73 LEREDECGICLEPCTKM-------VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~-------~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
.+++..|+||++.+.++ +.++|||.||..|+.+|+..+..||+||+++..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 34568999999998765 788899999999999999888899999999874
No 4
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3.8e-14 Score=92.98 Aligned_cols=51 Identities=24% Similarity=0.459 Sum_probs=44.5
Q ss_pred CCCCCCcceecccCCCCcccc-CCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 72 DLEREDECGICLEPCTKMVLP-NCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~~~~-~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
...+...|+||++.+.+++.. +|||.||..||.+|+..+..||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 345568999999999987664 899999999999998878899999999874
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.44 E-value=5.7e-14 Score=87.12 Aligned_cols=48 Identities=25% Similarity=0.689 Sum_probs=40.8
Q ss_pred CCCCcceecccCCCC---cccc-CCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 74 EREDECGICLEPCTK---MVLP-NCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~---~~~~-~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
++...|+||++.+.. +... +|||.||..|+.+|+..+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 345789999999876 4444 59999999999999998899999999864
No 6
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4.8e-14 Score=94.44 Aligned_cols=50 Identities=22% Similarity=0.454 Sum_probs=45.0
Q ss_pred CCCCCCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 72 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
+......|+||++.+.++++++|||.||..|+.+|+.....||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34456899999999999989999999999999999988889999999985
No 7
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.42 E-value=4.6e-14 Score=103.88 Aligned_cols=47 Identities=36% Similarity=0.842 Sum_probs=43.5
Q ss_pred CCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 76 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
+..|+||++.+.+++.++|||.||..||..|+..+..||+||.++..
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 36899999999999999999999999999999988999999999863
No 8
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=9.4e-14 Score=89.49 Aligned_cols=50 Identities=22% Similarity=0.497 Sum_probs=43.7
Q ss_pred CCCCCcceecccCCCCccccCCCCccchhhHHhhc-CCCCCCccccccccc
Q 030551 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWN-TKSESCPFCRGSMKR 122 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~-~~~~~CP~CR~~i~~ 122 (175)
..+...|+||++.+.+++.++|||.||..|+.+|+ .....||+||+++..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 45568999999999998889999999999999998 455689999999863
No 9
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.7e-13 Score=89.63 Aligned_cols=51 Identities=33% Similarity=0.751 Sum_probs=44.2
Q ss_pred CCCCCCcceecccCCCCccccCCCCccchhhHHhhcC---CCCCCccccccccc
Q 030551 72 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT---KSESCPFCRGSMKR 122 (175)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~---~~~~CP~CR~~i~~ 122 (175)
...+...|+||++.+.+++.++|||.||..|+.+|+. ....||+||.++..
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3456689999999999988889999999999999986 45589999999863
No 10
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=8.4e-14 Score=90.59 Aligned_cols=49 Identities=35% Similarity=0.965 Sum_probs=43.9
Q ss_pred CCCCCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
..+...|+||++.+.+ +.++|||.||..|+.+|+.....||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 4456899999999998 777899999999999999988899999999874
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3e-14 Score=92.09 Aligned_cols=49 Identities=27% Similarity=0.753 Sum_probs=43.0
Q ss_pred CCCCCcceecccCCCCc-------cccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 73 LEREDECGICLEPCTKM-------VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~-------~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..+...|+||++.+.++ +.++|||.||..|+.+|+..+..||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 45668999999988764 77889999999999999888889999999875
No 12
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.41 E-value=8.1e-14 Score=91.97 Aligned_cols=50 Identities=28% Similarity=0.533 Sum_probs=43.3
Q ss_pred CCCCCCcceecccCCCCccccC-CCCccchhhHHhhcCCC--CCCcccccccc
Q 030551 72 DLEREDECGICLEPCTKMVLPN-CCHAMCIKCYRNWNTKS--ESCPFCRGSMK 121 (175)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~~~~~-C~H~fc~~Ci~~w~~~~--~~CP~CR~~i~ 121 (175)
...+...|+||++.+.+++.++ |||.||..||..|+..+ ..||+||+++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3456689999999999998898 99999999999997644 58999999764
No 13
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.41 E-value=8.4e-14 Score=90.02 Aligned_cols=49 Identities=31% Similarity=0.825 Sum_probs=43.0
Q ss_pred CCCcceecccCCCC-ccccCCCCccchhhHHhhcCCCCCCcccccccccc
Q 030551 75 REDECGICLEPCTK-MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRV 123 (175)
Q Consensus 75 ~~~~C~IC~~~~~~-~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~~ 123 (175)
....|+||++.+.+ .+.++|||.||..|+.+|+..+..||+||+++...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 34689999999988 47788999999999999998888999999998743
No 14
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.40 E-value=1.8e-13 Score=90.85 Aligned_cols=51 Identities=33% Similarity=0.665 Sum_probs=44.4
Q ss_pred CCCCCCcceecccCCCCccccCCCCccchhhHHhhcCC-------CCCCccccccccc
Q 030551 72 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK-------SESCPFCRGSMKR 122 (175)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~-------~~~CP~CR~~i~~ 122 (175)
...+...|+||++.+.+++.++|||.||..|+.+|+.. ...||+||.++..
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34566899999999999888899999999999999765 5689999999863
No 15
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.40 E-value=1.1e-13 Score=91.96 Aligned_cols=49 Identities=16% Similarity=0.305 Sum_probs=44.3
Q ss_pred CCCCCcceecccCCCCccccCCCCccchhhHHhhcCC-CCCCcccccccc
Q 030551 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK-SESCPFCRGSMK 121 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~-~~~CP~CR~~i~ 121 (175)
..+...|+||++.+.+++.++|||.||..||.+|+.. ...||+||.++.
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 4566899999999999999999999999999999876 678999999986
No 16
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.40 E-value=7e-14 Score=86.64 Aligned_cols=47 Identities=28% Similarity=0.658 Sum_probs=41.2
Q ss_pred CCCcceecccCCCC----ccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 75 REDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 75 ~~~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
....|+||++.+.+ ++.++|||.||..|+.+|+..+..||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999999855 777889999999999999887889999999874
No 17
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.40 E-value=2e-13 Score=90.66 Aligned_cols=50 Identities=28% Similarity=0.616 Sum_probs=42.5
Q ss_pred CCCCCcceecccCCCC---ccccCCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 73 LEREDECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
......|+||++.+.. ...++|||.||..||.+|+..+..||+||+++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 4456899999998875 3445799999999999999888899999999874
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.6e-13 Score=91.03 Aligned_cols=51 Identities=33% Similarity=0.714 Sum_probs=43.9
Q ss_pred CCCCCCcceecccCCCC----ccccCCCCccchhhHHhhcCCC---CCCccccccccc
Q 030551 72 DLEREDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKS---ESCPFCRGSMKR 122 (175)
Q Consensus 72 ~~~~~~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w~~~~---~~CP~CR~~i~~ 122 (175)
...+...|+||++.+.+ ++.++|||.||..|+.+|+..+ ..||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 34566899999999988 8888999999999999997654 699999998763
No 19
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.8e-13 Score=92.04 Aligned_cols=48 Identities=25% Similarity=0.642 Sum_probs=40.6
Q ss_pred CCCcceecccCCCC---------------ccccCCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 75 REDECGICLEPCTK---------------MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 75 ~~~~C~IC~~~~~~---------------~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
++..|+||++.+.. .++++|||.||..||.+|+..+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45779999988853 3556799999999999999999999999999863
No 20
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.7e-13 Score=90.07 Aligned_cols=51 Identities=27% Similarity=0.654 Sum_probs=42.2
Q ss_pred CCCCCCcceecccCCCCc---cccCCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 72 DLEREDECGICLEPCTKM---VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~---~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
+......|+||++.+... ...+|+|.||..|+.+|+..+..||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 345568999999998753 233799999999999998888899999999864
No 21
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.38 E-value=2.8e-14 Score=90.92 Aligned_cols=48 Identities=27% Similarity=0.777 Sum_probs=42.0
Q ss_pred CCCcceecccCCCCc-------cccCCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 75 REDECGICLEPCTKM-------VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~-------~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
++..|+||++.+..+ +.++|||.||..|+.+|+..+..||+||+++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 347899999988764 777899999999999998888899999999864
No 22
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.36 E-value=1.7e-13 Score=93.98 Aligned_cols=49 Identities=31% Similarity=0.606 Sum_probs=42.3
Q ss_pred CCCCCcceecccCCCC---ccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 73 LEREDECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
...+..|+||++.+.. ...++|||.||..||.+|+..+..||+||.++.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 3456789999998876 566679999999999999998889999999875
No 23
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1.1e-13 Score=91.43 Aligned_cols=49 Identities=22% Similarity=0.624 Sum_probs=42.0
Q ss_pred CCCCCcceecccCCCCc---cccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 73 LEREDECGICLEPCTKM---VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~---~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..+...|+||++.+... ..++|+|.||..|+.+|+..+..||+||+++.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 34567899999988763 56679999999999999988889999999885
No 24
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.35 E-value=3e-13 Score=92.52 Aligned_cols=50 Identities=26% Similarity=0.520 Sum_probs=43.2
Q ss_pred CCCCCCcceecccCCCCccccC-CCCccchhhHHhhcCC--CCCCcccccccc
Q 030551 72 DLEREDECGICLEPCTKMVLPN-CCHAMCIKCYRNWNTK--SESCPFCRGSMK 121 (175)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~~~~~-C~H~fc~~Ci~~w~~~--~~~CP~CR~~i~ 121 (175)
...+...|+||++.+.+++.++ |||.||..||.+|+.. ...||+||.++.
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4566789999999999999999 9999999999999743 358999999873
No 25
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=9.2e-13 Score=88.16 Aligned_cols=51 Identities=35% Similarity=0.732 Sum_probs=44.4
Q ss_pred CCCCCCcceecccCCCCccccCCCCccchhhHHhhcCC------CCCCccccccccc
Q 030551 72 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK------SESCPFCRGSMKR 122 (175)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~------~~~CP~CR~~i~~ 122 (175)
...+...|+||++.+.+++.++|||.||..|+..|+.. ...||+||.++..
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 34566899999999999888899999999999999755 6799999999873
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.35 E-value=5.4e-13 Score=89.31 Aligned_cols=50 Identities=30% Similarity=0.636 Sum_probs=43.8
Q ss_pred CCCCCcceecccCCCCccccCCCCccchhhHHhhcCC------CCCCccccccccc
Q 030551 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK------SESCPFCRGSMKR 122 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~------~~~CP~CR~~i~~ 122 (175)
..+...|+||++.+.+++.++|||.||..|+..|+.. ...||.||.++..
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4566899999999999888899999999999999655 6689999999863
No 27
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.3e-12 Score=81.52 Aligned_cols=45 Identities=33% Similarity=0.892 Sum_probs=38.9
Q ss_pred CCCCCCcceecccCCCCccccCCCCccchhhHHhh---cCCCCCCccc
Q 030551 72 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNW---NTKSESCPFC 116 (175)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w---~~~~~~CP~C 116 (175)
...+...|+||++.+.+++.++|||.||..|+.+| ......||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34556899999999999888999999999999999 4456689998
No 28
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.34 E-value=4.6e-13 Score=95.06 Aligned_cols=47 Identities=30% Similarity=0.644 Sum_probs=39.6
Q ss_pred CCcceecccCCCCcc------------------ccCCCCccchhhHHhhc-----CCCCCCccccccccc
Q 030551 76 EDECGICLEPCTKMV------------------LPNCCHAMCIKCYRNWN-----TKSESCPFCRGSMKR 122 (175)
Q Consensus 76 ~~~C~IC~~~~~~~~------------------~~~C~H~fc~~Ci~~w~-----~~~~~CP~CR~~i~~ 122 (175)
+..|+||++.+..+. +++|+|.||..||.+|+ ..+..||+||+.+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 468999999986532 67899999999999998 556799999998864
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.33 E-value=2.4e-13 Score=94.80 Aligned_cols=46 Identities=35% Similarity=0.903 Sum_probs=42.0
Q ss_pred CCcceecccCCCCccc-cCCCCccchhhHHhhcCCC-CCCcccccccc
Q 030551 76 EDECGICLEPCTKMVL-PNCCHAMCIKCYRNWNTKS-ESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~~~~~-~~C~H~fc~~Ci~~w~~~~-~~CP~CR~~i~ 121 (175)
...|+||++.+.+++. ++|||.||..||.+|+... ..||+||.++.
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 4789999999999888 9999999999999998766 69999999985
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=9.4e-13 Score=83.90 Aligned_cols=45 Identities=36% Similarity=0.771 Sum_probs=39.3
Q ss_pred CCCCCCcceecccCCCCccccCCCCccchhhHHhhcC---CCCCCccc
Q 030551 72 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT---KSESCPFC 116 (175)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~---~~~~CP~C 116 (175)
...++..|+||++.+.+++.++|||.||..||.+|+. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456789999999999988889999999999999976 45589998
No 31
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.30 E-value=8.2e-13 Score=91.61 Aligned_cols=48 Identities=27% Similarity=0.670 Sum_probs=42.8
Q ss_pred CCCcceecccCCCCcccc-CCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 75 REDECGICLEPCTKMVLP-NCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~-~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
+...|+||++.+.+++.. +|||.||..|+.+|+..+..||.||.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 347899999999998766 899999999999999888899999999863
No 32
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.30 E-value=6.3e-13 Score=93.68 Aligned_cols=49 Identities=20% Similarity=0.524 Sum_probs=43.9
Q ss_pred CCCCcceecccCCCCcccc-CCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 74 EREDECGICLEPCTKMVLP-NCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~-~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
.+...|+||++.+.+++.+ +|||.||..|+..|+..+..||.||.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 3457899999999998876 999999999999999888899999999874
No 33
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.29 E-value=7.3e-13 Score=95.54 Aligned_cols=47 Identities=26% Similarity=0.518 Sum_probs=41.8
Q ss_pred CCCcceecccCCCCccccCCCCccchhhHHhhcCCC-CCCcccccccc
Q 030551 75 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS-ESCPFCRGSMK 121 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~-~~CP~CR~~i~ 121 (175)
+...|+||++.+.+++.++|||.||..||..|+... ..||+||.++.
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 447899999999999989999999999999997644 49999999986
No 34
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.29 E-value=1.4e-12 Score=88.49 Aligned_cols=50 Identities=18% Similarity=-0.016 Sum_probs=45.4
Q ss_pred CCCCCCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 72 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
...+...|+||++.+.+++.++|||+||..||.+|+....+||+||.++.
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 34567999999999999999999999999999999877789999999886
No 35
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.28 E-value=1.7e-12 Score=91.71 Aligned_cols=47 Identities=23% Similarity=0.599 Sum_probs=40.5
Q ss_pred CCCcceecccCCCCc------------------cccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 75 REDECGICLEPCTKM------------------VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~------------------~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
++..|+||++.+... +.++|+|.||..||.+|+..+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 357899999988743 44689999999999999999999999999875
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.27 E-value=9.4e-13 Score=84.49 Aligned_cols=47 Identities=19% Similarity=0.576 Sum_probs=38.5
Q ss_pred CCcceeccc-CCCCc----cccCCCCccchhhHHhhc-CCCCCCccccccccc
Q 030551 76 EDECGICLE-PCTKM----VLPNCCHAMCIKCYRNWN-TKSESCPFCRGSMKR 122 (175)
Q Consensus 76 ~~~C~IC~~-~~~~~----~~~~C~H~fc~~Ci~~w~-~~~~~CP~CR~~i~~ 122 (175)
+..|+||++ .+.++ ++++|||.||..|+.+|. .....||+||.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 468999999 66554 467899999999999994 445689999999864
No 37
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.27 E-value=2.5e-12 Score=89.90 Aligned_cols=50 Identities=18% Similarity=-0.002 Sum_probs=45.7
Q ss_pred CCCCCCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 72 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
...+...|+||++.+.+|+.++|||+||..||.+|+....+||+||.++.
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 34567999999999999999999999999999999988889999999986
No 38
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.27 E-value=7.2e-13 Score=94.30 Aligned_cols=49 Identities=37% Similarity=0.810 Sum_probs=43.2
Q ss_pred CCCCcceecccCCCCccccCCCCccchhhHHhhcCC-CCCCccccccccc
Q 030551 74 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK-SESCPFCRGSMKR 122 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~-~~~CP~CR~~i~~ 122 (175)
.++..|+||++.+.+++.++|||.||..|+.+|+.. ...||+||.++..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 345789999999999888899999999999999866 5689999999863
No 39
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.26 E-value=1.2e-11 Score=82.65 Aligned_cols=50 Identities=26% Similarity=0.651 Sum_probs=39.8
Q ss_pred CCCCCcceecccCCC--CccccC--CCCccchhhHHhhc-CCCCCCccccccccc
Q 030551 73 LEREDECGICLEPCT--KMVLPN--CCHAMCIKCYRNWN-TKSESCPFCRGSMKR 122 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~--~~~~~~--C~H~fc~~Ci~~w~-~~~~~CP~CR~~i~~ 122 (175)
.+++..|+||++.+. ++...+ |||.||..|+..+. .....||.||+++..
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 456689999999884 344444 99999999998875 345689999999874
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.25 E-value=2.3e-12 Score=90.89 Aligned_cols=46 Identities=30% Similarity=0.737 Sum_probs=40.9
Q ss_pred CcceecccCCCCccccCCCCccchhhHHhhcCCC---CCCccccccccc
Q 030551 77 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS---ESCPFCRGSMKR 122 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~---~~CP~CR~~i~~ 122 (175)
..|+||++.+.+++.++|||.||..|+..|+..+ ..||+||.++..
T Consensus 22 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 5799999999998889999999999999997654 389999999863
No 41
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.25 E-value=5.9e-12 Score=87.69 Aligned_cols=49 Identities=12% Similarity=-0.036 Sum_probs=45.2
Q ss_pred CCCCCcceecccCCCCccccCCC-CccchhhHHhhcCCCCCCcccccccc
Q 030551 73 LEREDECGICLEPCTKMVLPNCC-HAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~C~-H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..+...|+||++.+.+++.++|| |+||..||.+|+....+||+||.++.
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 45678999999999999999999 99999999999988889999999986
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.25 E-value=1e-12 Score=94.80 Aligned_cols=49 Identities=27% Similarity=0.760 Sum_probs=43.8
Q ss_pred CCCcceecccCCCCc-------cccCCCCccchhhHHhhcCCCCCCcccccccccc
Q 030551 75 REDECGICLEPCTKM-------VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRV 123 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~-------~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~~ 123 (175)
++..|+||++.+.++ +.++|||.||..||.+|+..+.+||+||+++...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 457899999998776 8889999999999999998888999999998743
No 43
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.23 E-value=4e-12 Score=79.50 Aligned_cols=45 Identities=22% Similarity=0.518 Sum_probs=39.6
Q ss_pred CCCCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 74 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
.+...|+||++.+.+++.++|||.||..|+..| ...||+||+++.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 456789999999999998999999999999774 458999999986
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.22 E-value=2.9e-12 Score=95.73 Aligned_cols=48 Identities=27% Similarity=0.584 Sum_probs=42.7
Q ss_pred CCCcceecccCCCCccccCCCCccchhhHHhhcCCCC-CCccccccccc
Q 030551 75 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSE-SCPFCRGSMKR 122 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~-~CP~CR~~i~~ 122 (175)
+...|+||++.+.+++.++|||.||..||..|+.... .||+||.++..
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 4478999999999999999999999999999986554 89999999863
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.22 E-value=1.8e-12 Score=92.77 Aligned_cols=51 Identities=27% Similarity=0.525 Sum_probs=44.4
Q ss_pred CCCCCCcceecccCCCCccccCCCCccchhhHHhhcCCCC-CCccccccccc
Q 030551 72 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSE-SCPFCRGSMKR 122 (175)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~-~CP~CR~~i~~ 122 (175)
...+...|+||++.+.+++.++|||.||..||.+|+..+. .||+||.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 3456689999999999998899999999999999976654 99999999863
No 46
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.18 E-value=3.2e-12 Score=82.22 Aligned_cols=48 Identities=21% Similarity=0.590 Sum_probs=42.3
Q ss_pred CCCcceecccCCCCcccc--CCCCc-cchhhHHhhcCCCCCCccccccccc
Q 030551 75 REDECGICLEPCTKMVLP--NCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~--~C~H~-fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
++..|.||++...++++. +|||. ||..|+..|...+..||+||+++..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 456899999999997765 89999 8999999998878899999999864
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.17 E-value=5.6e-12 Score=89.77 Aligned_cols=48 Identities=25% Similarity=0.466 Sum_probs=43.0
Q ss_pred CCCcceecccCCCCccccCCCCccchhhHHhhcCC-CCCCccccccccc
Q 030551 75 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK-SESCPFCRGSMKR 122 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~-~~~CP~CR~~i~~ 122 (175)
+...|+||++.+.+++.++|||.||..||.+|+.. ...||+||.++..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 45789999999999988999999999999999865 6699999999863
No 48
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.17 E-value=6.3e-12 Score=94.84 Aligned_cols=48 Identities=27% Similarity=0.650 Sum_probs=42.0
Q ss_pred CCCCcceecccCCCCcccc-CCCCccchhhHHhhcCC-CCCCcccccccc
Q 030551 74 EREDECGICLEPCTKMVLP-NCCHAMCIKCYRNWNTK-SESCPFCRGSMK 121 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~-~C~H~fc~~Ci~~w~~~-~~~CP~CR~~i~ 121 (175)
.....|+||++.+.+++.+ +|||.||..||.+|+.. ...||+||.++.
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 3457999999999997765 89999999999999875 678999999985
No 49
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=1.2e-11 Score=88.38 Aligned_cols=44 Identities=23% Similarity=0.503 Sum_probs=40.4
Q ss_pred CCcceecccCCCCcccc-CCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 76 EDECGICLEPCTKMVLP-NCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~~~~~~-~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
...|+||++.+.+++.+ +|||.||..||..|+. ..||+||.++.
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 47899999999998888 9999999999999987 78999999975
No 50
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.16 E-value=4.2e-12 Score=93.94 Aligned_cols=50 Identities=20% Similarity=0.424 Sum_probs=43.7
Q ss_pred CCCCCCcceecccCCCCccccCCCCccchhhHHhhcCCCC-CCcccccccc
Q 030551 72 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSE-SCPFCRGSMK 121 (175)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~-~CP~CR~~i~ 121 (175)
..++...|+||++.+.+++.++|||.||..||.+|+.... .||.||.++.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 3456689999999999999999999999999999987554 8999999864
No 51
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.15 E-value=4.8e-12 Score=90.87 Aligned_cols=47 Identities=23% Similarity=0.591 Sum_probs=0.9
Q ss_pred CCCcceecccCCCC------------------ccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 75 REDECGICLEPCTK------------------MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 75 ~~~~C~IC~~~~~~------------------~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
.+..|+||++.+.. .+.++|+|.||..||.+|+..+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 34789999998864 233579999999999999999999999999865
No 52
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.14 E-value=4.9e-12 Score=81.07 Aligned_cols=48 Identities=21% Similarity=0.538 Sum_probs=41.4
Q ss_pred CCCcceecccCCCCcccc--CCCCc-cchhhHHhhcCCCCCCccccccccc
Q 030551 75 REDECGICLEPCTKMVLP--NCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~--~C~H~-fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
....|.||++...++++. +|||. ||..|+..|...+..||+||+++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 346899999998886655 89998 9999999998777899999999864
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.13 E-value=1.6e-11 Score=81.00 Aligned_cols=43 Identities=28% Similarity=0.745 Sum_probs=39.3
Q ss_pred CCcceecccCCCCccccCCCCc-cchhhHHhhcCCCCCCccccccccc
Q 030551 76 EDECGICLEPCTKMVLPNCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~C~H~-fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
+..|+||++.+.+++..+|||. ||..|+..| ..||+||+++..
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 3689999999999988899999 999999998 699999999874
No 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.11 E-value=2.6e-11 Score=97.54 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=43.9
Q ss_pred CCCCCCcceecccCCCCccccCCCCccchhhHHhhcCC-CCCCcccccccc
Q 030551 72 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK-SESCPFCRGSMK 121 (175)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~-~~~CP~CR~~i~ 121 (175)
+......|+||++.+.+|+.++|||+||..||.+|+.. ..+||+||.++.
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 44567899999999999999999999999999999764 345999999986
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.10 E-value=6e-12 Score=90.75 Aligned_cols=49 Identities=27% Similarity=0.773 Sum_probs=43.0
Q ss_pred CCCCcceecccCCCCc-------cccCCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 74 EREDECGICLEPCTKM-------VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~-------~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
.+...|+||++.+..+ +.++|||.||..|+.+|+..+.+||+||.++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 4567899999987764 777899999999999999888999999999874
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.09 E-value=2.8e-11 Score=102.72 Aligned_cols=47 Identities=34% Similarity=0.892 Sum_probs=42.9
Q ss_pred CCcceecccCCCCccccCCCCccchhhHHhhcC-CCCCCccccccccc
Q 030551 76 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT-KSESCPFCRGSMKR 122 (175)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~-~~~~CP~CR~~i~~ 122 (175)
...|+||++.+.+++.++|||.||..|+..|+. ....||+||+++..
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 368999999999999999999999999999987 67799999999874
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.03 E-value=4.2e-11 Score=90.60 Aligned_cols=51 Identities=27% Similarity=0.533 Sum_probs=44.4
Q ss_pred CCCCCCcceecccCCCCccccCCCCccchhhHHhhcCCC-CCCccccccccc
Q 030551 72 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS-ESCPFCRGSMKR 122 (175)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~-~~CP~CR~~i~~ 122 (175)
...+...|+||++.+.+++.++|||.||..|+.+|+..+ ..||.||.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 455678999999999999999999999999999997654 499999998863
No 58
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.5e-10 Score=76.39 Aligned_cols=42 Identities=26% Similarity=0.734 Sum_probs=37.6
Q ss_pred CcceecccCCCCccccCCCCc-cchhhHHhhcCCCCCCccccccccc
Q 030551 77 DECGICLEPCTKMVLPNCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~~C~H~-fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
..|+||++.+.++++++|||. ||..|+..+ ..||+||.++..
T Consensus 26 ~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCC
T ss_pred CCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceecC
Confidence 579999999999999999999 999999653 689999999864
No 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=2.4e-10 Score=74.27 Aligned_cols=46 Identities=28% Similarity=0.733 Sum_probs=40.0
Q ss_pred CCCCCcceecccCCCCccccCCCCc-cchhhHHhhcCCCCCCccccccccc
Q 030551 73 LEREDECGICLEPCTKMVLPNCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~C~H~-fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
..+...|.||++...++++.+|||. ||..|+.. ...||+||+++..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 3456889999999999999999999 99999984 3699999999874
No 60
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.1e-10 Score=78.26 Aligned_cols=49 Identities=22% Similarity=0.574 Sum_probs=39.7
Q ss_pred CCCCCcceecccCCC--CccccCCC-----CccchhhHHhhcCCC--CCCcccccccc
Q 030551 73 LEREDECGICLEPCT--KMVLPNCC-----HAMCIKCYRNWNTKS--ESCPFCRGSMK 121 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~--~~~~~~C~-----H~fc~~Ci~~w~~~~--~~CP~CR~~i~ 121 (175)
..+...|.||++.+. ..++++|. |.||..||.+|+..+ .+||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 345578999998774 35567796 999999999997654 48999999986
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=8e-11 Score=81.10 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=40.6
Q ss_pred CCCCcceecccCCCCccccC-CCCccchhhHHhhcCCC------CCCcc--cccc-cc
Q 030551 74 EREDECGICLEPCTKMVLPN-CCHAMCIKCYRNWNTKS------ESCPF--CRGS-MK 121 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~-C~H~fc~~Ci~~w~~~~------~~CP~--CR~~-i~ 121 (175)
.....|+||++.+.+|+.++ |||+||..||.+|+..+ ..||+ |+.. +.
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 45589999999999999985 99999999999997543 48999 9866 54
No 62
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=9.6e-10 Score=72.61 Aligned_cols=49 Identities=18% Similarity=0.471 Sum_probs=40.2
Q ss_pred CCCCcceecccCCCC-ccccCCCCccchhhHHhhcCCC--CCCccccccccc
Q 030551 74 EREDECGICLEPCTK-MVLPNCCHAMCIKCYRNWNTKS--ESCPFCRGSMKR 122 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~-~~~~~C~H~fc~~Ci~~w~~~~--~~CP~CR~~i~~ 122 (175)
+....|+||.+.+.. ..-..|+|.||..||.+|+..+ .+||+||+++..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 345789999998875 3333799999999999998776 799999998763
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.94 E-value=2.1e-10 Score=88.00 Aligned_cols=50 Identities=10% Similarity=-0.000 Sum_probs=43.9
Q ss_pred CCCCCCcceecccCCCCccccCCCCccchhhHHhhcCC-CCCCcccccccc
Q 030551 72 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK-SESCPFCRGSMK 121 (175)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~-~~~CP~CR~~i~ 121 (175)
.......|+||++.+.+|+.++|||+||..||..|+.. +.+||+||.++.
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 44567899999999999999999999999999999754 347999999886
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.92 E-value=3e-10 Score=75.87 Aligned_cols=43 Identities=30% Similarity=0.708 Sum_probs=38.6
Q ss_pred CcceecccCCCCccccCCCCc-cchhhHHhhcCCCCCCcccccccccc
Q 030551 77 DECGICLEPCTKMVLPNCCHA-MCIKCYRNWNTKSESCPFCRGSMKRV 123 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~~C~H~-fc~~Ci~~w~~~~~~CP~CR~~i~~~ 123 (175)
..|+||++...++++.+|||. ||..|+..| ..||+||.++...
T Consensus 19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp TBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 579999999999999999999 999999877 3999999999753
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.80 E-value=2.3e-09 Score=86.45 Aligned_cols=49 Identities=20% Similarity=0.398 Sum_probs=41.9
Q ss_pred CCCCCcceecccCCCCcccc-CCCCccchhhHHhhcCCC--CCCcc--cccccc
Q 030551 73 LEREDECGICLEPCTKMVLP-NCCHAMCIKCYRNWNTKS--ESCPF--CRGSMK 121 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~-~C~H~fc~~Ci~~w~~~~--~~CP~--CR~~i~ 121 (175)
......|+||++.+.+|+.. .|||.||..||..|+..+ ..||. ||..+.
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 34558999999999999874 899999999999997653 47999 999875
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.78 E-value=1.5e-09 Score=91.15 Aligned_cols=44 Identities=32% Similarity=0.876 Sum_probs=40.1
Q ss_pred CCCcceecccCCCCccccCCCCc-cchhhHHhhcCCCCCCccccccccc
Q 030551 75 REDECGICLEPCTKMVLPNCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~C~H~-fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
++..|+||++.+.+++.++|||. ||..|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 45799999999999999899999 999999988 689999999874
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.65 E-value=4e-09 Score=67.02 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=42.1
Q ss_pred CcceecccCCCCcccc-CCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 77 DECGICLEPCTKMVLP-NCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~-~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
..|+||++.+.+++++ +|||.|+..||.+|+..+.+||+.+.++..
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 5799999999999988 899999999999998777789999999863
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.62 E-value=8.9e-09 Score=70.50 Aligned_cols=45 Identities=22% Similarity=0.603 Sum_probs=35.4
Q ss_pred CCCcceecccCCCCccc---cCCCCccchhhHHhhcCC--------CCCCcc--cccc
Q 030551 75 REDECGICLEPCTKMVL---PNCCHAMCIKCYRNWNTK--------SESCPF--CRGS 119 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~---~~C~H~fc~~Ci~~w~~~--------~~~CP~--CR~~ 119 (175)
...+|+||++.+..+.. .+|||.||..|+..++.. .-.||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45789999999876433 369999999999887431 237999 9987
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.57 E-value=1.2e-08 Score=85.09 Aligned_cols=49 Identities=22% Similarity=0.598 Sum_probs=38.1
Q ss_pred CCCCCcceecccCCCC-ccc-------cCCCCccchhhHHhhcCCC-----------CCCcccccccc
Q 030551 73 LEREDECGICLEPCTK-MVL-------PNCCHAMCIKCYRNWNTKS-----------ESCPFCRGSMK 121 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~-~~~-------~~C~H~fc~~Ci~~w~~~~-----------~~CP~CR~~i~ 121 (175)
.+...+|+||++.+.. ..+ ++|+|.||..|+.+|+... ..||+||+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3456799999987765 222 3699999999999996431 37999999986
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.44 E-value=7.8e-08 Score=60.79 Aligned_cols=48 Identities=23% Similarity=0.467 Sum_probs=37.5
Q ss_pred CCCCcceecccCCCCccccCCC--C---ccchhhHHhhcCC--CCCCcccccccc
Q 030551 74 EREDECGICLEPCTKMVLPNCC--H---AMCIKCYRNWNTK--SESCPFCRGSMK 121 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~C~--H---~fc~~Ci~~w~~~--~~~CP~CR~~i~ 121 (175)
++...|.||++......+.||. | .||..|+.+|+.. +.+||+|+.++.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4557899999876555567765 4 8999999999753 568999998874
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.42 E-value=7.6e-08 Score=66.47 Aligned_cols=47 Identities=23% Similarity=0.547 Sum_probs=38.7
Q ss_pred cceecccCCCC-ccccCCCCccchhhHHhhc-CCCCCCccccccccccc
Q 030551 78 ECGICLEPCTK-MVLPNCCHAMCIKCYRNWN-TKSESCPFCRGSMKRVN 124 (175)
Q Consensus 78 ~C~IC~~~~~~-~~~~~C~H~fc~~Ci~~w~-~~~~~CP~CR~~i~~~~ 124 (175)
.|++|--++.. ..+.||.|.||.+|+..|. ...+.||.|+.++.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 58888888776 5556699999999999986 55679999999998654
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.72 E-value=2.2e-05 Score=62.55 Aligned_cols=48 Identities=19% Similarity=0.465 Sum_probs=38.6
Q ss_pred CCCcceecccCCCC-ccccCCCCccchhhHHhhcCCCC--CCccccccccc
Q 030551 75 REDECGICLEPCTK-MVLPNCCHAMCIKCYRNWNTKSE--SCPFCRGSMKR 122 (175)
Q Consensus 75 ~~~~C~IC~~~~~~-~~~~~C~H~fc~~Ci~~w~~~~~--~CP~CR~~i~~ 122 (175)
....|.||.+.... ...+.|+|.||..|+..|..... .||.|+.++..
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 35789999998776 34445999999999999976544 89999988653
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.15 E-value=0.0027 Score=43.17 Aligned_cols=33 Identities=18% Similarity=0.453 Sum_probs=26.4
Q ss_pred CCCcceecccC-CCCccc--cCCCCccchhhHHh-hc
Q 030551 75 REDECGICLEP-CTKMVL--PNCCHAMCIKCYRN-WN 107 (175)
Q Consensus 75 ~~~~C~IC~~~-~~~~~~--~~C~H~fc~~Ci~~-w~ 107 (175)
++..|+||.+. +..++. ..|+|.||..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 34789999975 556665 67999999999998 54
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.04 E-value=0.013 Score=39.81 Aligned_cols=48 Identities=21% Similarity=0.444 Sum_probs=39.3
Q ss_pred CCCCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCccccccccc
Q 030551 74 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 122 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~ 122 (175)
-.-..|..|.-....-+.- ..|-.|..|+.-.+..+..||+|..++..
T Consensus 26 ~G~~nCKsCWf~~k~LV~C-~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 26 LGPQFCKSCWFENKGLVEC-NNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp SCCCCCCSSCSCCSSEEEC-SSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred cCcccChhhccccCCeeee-cchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 3448899999887753333 58999999999999999999999999863
No 75
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=92.93 E-value=0.51 Score=31.57 Aligned_cols=50 Identities=24% Similarity=0.634 Sum_probs=37.0
Q ss_pred CCCcceecccCCCC-------ccccCCCCccchhhHH-hhcCCCCCCccccccccccc
Q 030551 75 REDECGICLEPCTK-------MVLPNCCHAMCIKCYR-NWNTKSESCPFCRGSMKRVN 124 (175)
Q Consensus 75 ~~~~C~IC~~~~~~-------~~~~~C~H~fc~~Ci~-~w~~~~~~CP~CR~~i~~~~ 124 (175)
....|.||-+..-. .....|+-..|..|.. +....++.||.|+...++..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~k 72 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLR 72 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCT
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccccc
Confidence 44789999987532 3344578888999994 34677889999999887543
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.92 E-value=0.12 Score=32.70 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=32.6
Q ss_pred CCCcceecccCCCCccccCCCCccchhhHHhhcCC----CCCCcccccc
Q 030551 75 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK----SESCPFCRGS 119 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~----~~~CP~CR~~ 119 (175)
....|.+|.+.-.-..--.|...||..|+.+.+.. ...||.|.+.
T Consensus 11 ~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 44679999876443444468999999999876543 3389999764
No 77
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=89.80 E-value=0.28 Score=37.54 Aligned_cols=47 Identities=21% Similarity=0.431 Sum_probs=32.8
Q ss_pred CCCCcceecccCCCCccccCCCCccchhhHHhhcCC----CCCCccccccc
Q 030551 74 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK----SESCPFCRGSM 120 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~----~~~CP~CR~~i 120 (175)
..+..|.+|...-.-..--.|...||..|+.+-+.. ...||.|+..-
T Consensus 5 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 345679999865333444468899999999765432 34899997643
No 78
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=89.47 E-value=0.2 Score=46.84 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=44.5
Q ss_pred CCCCCCcceecccCCCCccccCCC-CccchhhHHhhcCCCCCCcccccccc
Q 030551 72 DLEREDECGICLEPCTKMVLPNCC-HAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~~~~~C~-H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
+..+...|||-.+.+.+|+.++-| +++-..+|.+|+..+.+||+=|.+++
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 345668999999999999999898 59999999999988889999999886
No 79
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=89.46 E-value=0.41 Score=35.88 Aligned_cols=46 Identities=24% Similarity=0.487 Sum_probs=32.4
Q ss_pred CCCcceecccCCCCccccCCCCccchhhHHhhcCC----CCCCccccccc
Q 030551 75 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK----SESCPFCRGSM 120 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~----~~~CP~CR~~i 120 (175)
.+..|.+|...-.-..--.|.-.||..|+.+-+.. ...||.|+..-
T Consensus 3 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 34679999876443444468889999999765432 34899998643
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=87.58 E-value=0.57 Score=28.81 Aligned_cols=46 Identities=22% Similarity=0.494 Sum_probs=31.5
Q ss_pred CCCCCcceecccCCCCccccCCCCccchhhHHhhcC----CCCCCccccc
Q 030551 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT----KSESCPFCRG 118 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~----~~~~CP~CR~ 118 (175)
...+..|.+|...-.-..--.|...||..|+.+-+. ..-.||.|+.
T Consensus 8 ~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 445678999987533233346888999999976432 2348999965
No 81
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=87.53 E-value=0.34 Score=31.86 Aligned_cols=34 Identities=26% Similarity=0.544 Sum_probs=26.6
Q ss_pred CCCCcceecccCCCCccccCC----CCccchhhHHhhc
Q 030551 74 EREDECGICLEPCTKMVLPNC----CHAMCIKCYRNWN 107 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~C----~H~fc~~Ci~~w~ 107 (175)
.....|.+|.+.+.+.-.-.| .|.||..|-+..+
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sI 50 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESI 50 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHH
Confidence 455889999999988444335 8999999998774
No 82
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.51 E-value=0.22 Score=30.14 Aligned_cols=46 Identities=20% Similarity=0.470 Sum_probs=30.8
Q ss_pred CCCCCcceecccCCCCccccCCCCccchhhHHhhcCC----CCCCccccc
Q 030551 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK----SESCPFCRG 118 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~----~~~CP~CR~ 118 (175)
...+..|.+|...-.-..--.|...||..|+.+-+.. ...||.|..
T Consensus 6 ~~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4456789999876433444468889999999754322 236888854
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=87.36 E-value=0.41 Score=29.49 Aligned_cols=47 Identities=17% Similarity=0.369 Sum_probs=31.7
Q ss_pred CCCCcceecccCCCCccccCCCCccchhhHHhhcC----CCCCCccccccc
Q 030551 74 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT----KSESCPFCRGSM 120 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~----~~~~CP~CR~~i 120 (175)
..+..|.+|.+.-.-..--.|...||..|+.+-+. ....||.|+...
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 34577999986533344446888999999975432 233799997643
No 84
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=83.63 E-value=2 Score=28.39 Aligned_cols=33 Identities=15% Similarity=0.381 Sum_probs=23.5
Q ss_pred CCCCCcceecccCCCC---ccccCCCCccchhhHHhh
Q 030551 73 LEREDECGICLEPCTK---MVLPNCCHAMCIKCYRNW 106 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w 106 (175)
...+..|.||-.--.. +-.. |+-.||..|+++-
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRv-C~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRV-CTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSS-SSSCCCHHHHHHH
T ss_pred CCCCcccCccccccccceecccc-ccccccHhhcccc
Confidence 4567899999743222 3333 8999999999885
No 85
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=82.65 E-value=0.12 Score=38.12 Aligned_cols=45 Identities=22% Similarity=0.486 Sum_probs=32.7
Q ss_pred CCCcceecccCCCC-----ccccCCCCccchhhHHhhcCC--CCCCccccccc
Q 030551 75 REDECGICLEPCTK-----MVLPNCCHAMCIKCYRNWNTK--SESCPFCRGSM 120 (175)
Q Consensus 75 ~~~~C~IC~~~~~~-----~~~~~C~H~fc~~Ci~~w~~~--~~~CP~CR~~i 120 (175)
.+..|.+|..++.. .+-..|.|.+|..|-. |... ...|-+|+..-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~r 118 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLAR 118 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHHH
Confidence 46899999998642 5566799999999983 4322 33799997653
No 86
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=81.95 E-value=0.55 Score=29.30 Aligned_cols=46 Identities=22% Similarity=0.480 Sum_probs=31.3
Q ss_pred CCCCcceecccCCCCccccCCCCccchhhHHhhcC----CCCCCcccccc
Q 030551 74 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT----KSESCPFCRGS 119 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~----~~~~CP~CR~~ 119 (175)
..+..|.+|.+.-.-..--.|.-.||..|+.+-+. ....||.|...
T Consensus 6 ~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 35578999987543344446888999999975332 23379999653
No 87
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=81.11 E-value=0.52 Score=29.05 Aligned_cols=34 Identities=32% Similarity=0.727 Sum_probs=22.9
Q ss_pred CcceecccCCCC------ccccC--CCCccchhhHHhhcCCC
Q 030551 77 DECGICLEPCTK------MVLPN--CCHAMCIKCYRNWNTKS 110 (175)
Q Consensus 77 ~~C~IC~~~~~~------~~~~~--C~H~fc~~Ci~~w~~~~ 110 (175)
..||-|...+.. ..-.. |+|.||..|..+|....
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 467777665543 33333 88999999998886543
No 88
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=80.09 E-value=0.56 Score=28.60 Aligned_cols=47 Identities=21% Similarity=0.489 Sum_probs=31.9
Q ss_pred CCCcceecccCCCCccccCCCCccchhhHHhhcC----CCCCCcccccccc
Q 030551 75 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT----KSESCPFCRGSMK 121 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~----~~~~CP~CR~~i~ 121 (175)
.+..|.+|...-.-..--.|...||..|+.+-+. ....||.|.....
T Consensus 4 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 4567999987543344446888999999975432 2337999976543
No 89
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=79.82 E-value=2 Score=31.10 Aligned_cols=46 Identities=22% Similarity=0.429 Sum_probs=33.2
Q ss_pred CCCCCcceecccCCCCccccCCCCccchhhHHhhcC-----------CCCCCccccc
Q 030551 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT-----------KSESCPFCRG 118 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~-----------~~~~CP~CR~ 118 (175)
...+..|.+|.+--.-..--.|-..||..|+.+-+. ....||.|+.
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 345578999998755444446999999999986442 2348999964
No 90
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=79.01 E-value=5 Score=30.09 Aligned_cols=44 Identities=18% Similarity=0.430 Sum_probs=30.4
Q ss_pred CcceecccCCCCccccCCCCccchhhHHhhcC----CCCCCccccccc
Q 030551 77 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNT----KSESCPFCRGSM 120 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~----~~~~CP~CR~~i 120 (175)
..|.+|...-.-..--.|...||..|+.+=+. ....||.|+..-
T Consensus 3 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 56999986644344445888999999975332 234899997653
No 91
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=78.79 E-value=2.9 Score=27.75 Aligned_cols=48 Identities=17% Similarity=0.368 Sum_probs=32.7
Q ss_pred CCCCCCcceecccCCCCccccCCCCccchhhHHhhcCC----CCCCcccccc
Q 030551 72 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK----SESCPFCRGS 119 (175)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~----~~~CP~CR~~ 119 (175)
....+..|.+|...-.-..--.|.-.||..|+.+=+.. ...||.|+..
T Consensus 21 ~d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 34456789999976433334457778999999764432 3379999754
No 92
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=78.24 E-value=1.8 Score=28.61 Aligned_cols=49 Identities=20% Similarity=0.449 Sum_probs=32.9
Q ss_pred CCCCCcceecccCCC--C---ccccCCCCccchhhHHhhc--CCCCCCcccccccc
Q 030551 73 LEREDECGICLEPCT--K---MVLPNCCHAMCIKCYRNWN--TKSESCPFCRGSMK 121 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~--~---~~~~~C~H~fc~~Ci~~w~--~~~~~CP~CR~~i~ 121 (175)
...+..|.||...-. . ..--.|.-.||..|+..-. .....||.|.....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 456689999987641 1 3333688899999996532 23448999976543
No 93
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=77.42 E-value=2.3 Score=30.27 Aligned_cols=47 Identities=21% Similarity=0.433 Sum_probs=32.3
Q ss_pred CCCCCcceecccCCCCccccCCCCccchhhHHhhc-----------CCCCCCcccccc
Q 030551 73 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWN-----------TKSESCPFCRGS 119 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~-----------~~~~~CP~CR~~ 119 (175)
...+..|.+|.+.-.-..--.|-..||..|+.+-+ .....|++|+.+
T Consensus 54 Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 34456799998764433344699999999998642 223489999543
No 94
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=77.33 E-value=0.5 Score=30.71 Aligned_cols=20 Identities=25% Similarity=0.835 Sum_probs=16.7
Q ss_pred CCCCccchhhHHhhcCCCCCCc
Q 030551 93 NCCHAMCIKCYRNWNTKSESCP 114 (175)
Q Consensus 93 ~C~H~fc~~Ci~~w~~~~~~CP 114 (175)
.|+|.||..|-..|-. ..|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 6999999999999965 4664
No 95
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=76.96 E-value=0.48 Score=33.44 Aligned_cols=45 Identities=18% Similarity=0.479 Sum_probs=29.6
Q ss_pred CCCcceecccCCCC----ccccCCCCccchhhHHhhcCCCCCCcccccc
Q 030551 75 REDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGS 119 (175)
Q Consensus 75 ~~~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~ 119 (175)
....|..|-..|.. -.-..||..||..|..........|-.|-..
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 34689999998875 2233699999999986655445678888543
No 96
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=75.55 E-value=1.8 Score=29.53 Aligned_cols=44 Identities=20% Similarity=0.454 Sum_probs=30.0
Q ss_pred CCCCcceecccCCCC---ccccCCCCccchhhHHhhcC----CCCCCcccc
Q 030551 74 EREDECGICLEPCTK---MVLPNCCHAMCIKCYRNWNT----KSESCPFCR 117 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w~~----~~~~CP~CR 117 (175)
..+..|.+|.+.-.. ..-..|+..||..|+..... ....||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 355789999876442 34457999999999977643 233666663
No 97
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=73.00 E-value=2.1 Score=28.27 Aligned_cols=49 Identities=22% Similarity=0.390 Sum_probs=32.4
Q ss_pred CCCCCcceecccCCCC----ccccCCCCccchhhHHhhc--C-----CCCCCcccccccc
Q 030551 73 LEREDECGICLEPCTK----MVLPNCCHAMCIKCYRNWN--T-----KSESCPFCRGSMK 121 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w~--~-----~~~~CP~CR~~i~ 121 (175)
..+...|.+|...|.. ---..||+.||..|..... . ....|-.|-..+.
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 3445689999998874 2223599999999986531 1 1236888865554
No 98
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=72.97 E-value=1.5 Score=26.80 Aligned_cols=46 Identities=24% Similarity=0.459 Sum_probs=30.0
Q ss_pred CCCCcceecccCCCC----ccccCCCCccchhhHHhhc-----CCCCCCcccccc
Q 030551 74 EREDECGICLEPCTK----MVLPNCCHAMCIKCYRNWN-----TKSESCPFCRGS 119 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w~-----~~~~~CP~CR~~ 119 (175)
.+...|++|..+..+ +.--.|...||..|+.--. .....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 345679999877532 2223588899999984321 134589999764
No 99
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=72.08 E-value=2.8 Score=25.71 Aligned_cols=40 Identities=25% Similarity=0.514 Sum_probs=27.9
Q ss_pred CcceecccCCCC---ccccCCCCccchhhHHhhcCCCCCCccc
Q 030551 77 DECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTKSESCPFC 116 (175)
Q Consensus 77 ~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w~~~~~~CP~C 116 (175)
..|-.|...+.+ ..-+.|++.||.+|=.=.-+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 358888887754 3367899999999954333333489988
No 100
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=71.67 E-value=1.3 Score=28.04 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=31.2
Q ss_pred CCCcceecccCCCC---ccccCCCCccchhhHHhhcC----CCCCCcccccccc
Q 030551 75 REDECGICLEPCTK---MVLPNCCHAMCIKCYRNWNT----KSESCPFCRGSMK 121 (175)
Q Consensus 75 ~~~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w~~----~~~~CP~CR~~i~ 121 (175)
+...|.+|...... ..--.|.-.||..|+..-.. ....||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34569999776433 22235888999999965432 2447999977654
No 101
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=71.46 E-value=2.4 Score=27.57 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=24.3
Q ss_pred CCCCcceecccCCCC----ccccCCCCccchhhHHhh
Q 030551 74 EREDECGICLEPCTK----MVLPNCCHAMCIKCYRNW 106 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w 106 (175)
.+...|.+|...|.. ---..||+.||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 345789999998874 222359999999998654
No 102
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=70.85 E-value=0.61 Score=38.16 Aligned_cols=46 Identities=22% Similarity=0.466 Sum_probs=34.5
Q ss_pred CCCCcceecccCCCCcccc----CCC--CccchhhHHhhcCCCCCCcccccc
Q 030551 74 EREDECGICLEPCTKMVLP----NCC--HAMCIKCYRNWNTKSESCPFCRGS 119 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~----~C~--H~fc~~Ci~~w~~~~~~CP~CR~~ 119 (175)
+....|++|-......++. .=| |.+|.-|-..|.-....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 5568999998876543332 244 567999999998888899999654
No 103
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=70.63 E-value=2.3 Score=27.55 Aligned_cols=32 Identities=25% Similarity=0.516 Sum_probs=23.7
Q ss_pred CCCcceecccCCCC----ccccCCCCccchhhHHhh
Q 030551 75 REDECGICLEPCTK----MVLPNCCHAMCIKCYRNW 106 (175)
Q Consensus 75 ~~~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w 106 (175)
+...|.+|...|.. ---..||..||..|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 34679999998874 222359999999998654
No 104
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.46 E-value=2.7 Score=27.28 Aligned_cols=32 Identities=19% Similarity=0.482 Sum_probs=23.4
Q ss_pred CCCCcceecccCCCC----ccccCCCCccchhhHHh
Q 030551 74 EREDECGICLEPCTK----MVLPNCCHAMCIKCYRN 105 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~ 105 (175)
.+...|.+|...|.. ----.||..||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 344689999998864 12235999999999754
No 105
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=70.25 E-value=1.8 Score=30.52 Aligned_cols=31 Identities=16% Similarity=0.403 Sum_probs=23.2
Q ss_pred CCcceecccCCCC----ccccCCCCccchhhHHhh
Q 030551 76 EDECGICLEPCTK----MVLPNCCHAMCIKCYRNW 106 (175)
Q Consensus 76 ~~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w 106 (175)
...|.+|...|.. ---..||+.||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 3679999998874 223369999999997554
No 106
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=70.23 E-value=1.3 Score=27.25 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=31.2
Q ss_pred CCCCcceecccCCC---C--ccccCCCCccchhhHHhhc-------CCCCCCcccccc
Q 030551 74 EREDECGICLEPCT---K--MVLPNCCHAMCIKCYRNWN-------TKSESCPFCRGS 119 (175)
Q Consensus 74 ~~~~~C~IC~~~~~---~--~~~~~C~H~fc~~Ci~~w~-------~~~~~CP~CR~~ 119 (175)
..+..|.+|..... . ..--.|.-.||..|+.+-+ .....||.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45578999987632 1 3334688899999997632 234489999654
No 107
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.50 E-value=1.7 Score=28.98 Aligned_cols=50 Identities=20% Similarity=0.279 Sum_probs=32.9
Q ss_pred CCCCCCCCcceecccCCCC---ccccCCCCccchhhHHhhcC----CCCCCcccccc
Q 030551 70 SADLEREDECGICLEPCTK---MVLPNCCHAMCIKCYRNWNT----KSESCPFCRGS 119 (175)
Q Consensus 70 ~~~~~~~~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w~~----~~~~CP~CR~~ 119 (175)
..+..+...|.||...-.. ..--.|...||..|+.+=+. ....||.|+..
T Consensus 10 ~~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 10 SAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hhhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3445566789999876432 33335888999999974332 23379999754
No 108
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=69.41 E-value=1.8 Score=29.77 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=17.5
Q ss_pred ccccCCCCccchhhHHhhcCCCCCCccccccc
Q 030551 89 MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSM 120 (175)
Q Consensus 89 ~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i 120 (175)
+....||+.|. .-+.....||.|++.-
T Consensus 68 ~~C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 68 AQCRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp CBBTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred cChhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 34456999991 2134456899998763
No 109
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=68.14 E-value=1.1 Score=27.55 Aligned_cols=45 Identities=24% Similarity=0.633 Sum_probs=27.3
Q ss_pred CCCCcceecccC-CCC---ccccCCCCccchhhHHhhcCCC-C---CCccccc
Q 030551 74 EREDECGICLEP-CTK---MVLPNCCHAMCIKCYRNWNTKS-E---SCPFCRG 118 (175)
Q Consensus 74 ~~~~~C~IC~~~-~~~---~~~~~C~H~fc~~Ci~~w~~~~-~---~CP~CR~ 118 (175)
.+...|.||... |-+ -.-.-|.-.||..|-..|..++ . .|-+||+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 345789999864 444 2222355667888877763322 2 5777764
No 110
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=67.69 E-value=2.3 Score=28.16 Aligned_cols=47 Identities=17% Similarity=0.381 Sum_probs=30.6
Q ss_pred CCCcceecccCCCC----ccccCCCCccchhhHHhhcC------CCCCCcccccccc
Q 030551 75 REDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNT------KSESCPFCRGSMK 121 (175)
Q Consensus 75 ~~~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w~~------~~~~CP~CR~~i~ 121 (175)
+...|.+|...|.. -.-..||+.||..|...... ....|-.|-..+.
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 34679999988764 23346999999999866521 1225666654443
No 111
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=66.60 E-value=4.5 Score=23.43 Aligned_cols=41 Identities=22% Similarity=0.551 Sum_probs=25.7
Q ss_pred cceecccCCCC---ccccCCCCccchhhHHhhcC----CCCCCccccc
Q 030551 78 ECGICLEPCTK---MVLPNCCHAMCIKCYRNWNT----KSESCPFCRG 118 (175)
Q Consensus 78 ~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w~~----~~~~CP~CR~ 118 (175)
.|.+|...-.. ..--.|...||..|+.+=+. ..-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 47777754321 22335888999999965322 2337999965
No 112
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=65.05 E-value=4.5 Score=34.01 Aligned_cols=45 Identities=20% Similarity=0.516 Sum_probs=31.5
Q ss_pred CCCCcceecccCCCCcccc--CCCCccchhhHHhhcCC----------CCCCccccc
Q 030551 74 EREDECGICLEPCTKMVLP--NCCHAMCIKCYRNWNTK----------SESCPFCRG 118 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~--~C~H~fc~~Ci~~w~~~----------~~~CP~CR~ 118 (175)
..+.-|.+|-+.-.-..-- .|...||..||...+.. ...|=+|.-
T Consensus 91 G~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 91 GYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 3456788888765443333 69999999999988643 237888853
No 113
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=64.94 E-value=3.4 Score=26.10 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=21.9
Q ss_pred CcceecccCCCC----ccccCCCCccchhhHHh
Q 030551 77 DECGICLEPCTK----MVLPNCCHAMCIKCYRN 105 (175)
Q Consensus 77 ~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~ 105 (175)
..|.+|...|.. ---..||+.||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 589999988864 22235999999999754
No 114
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=63.54 E-value=0.98 Score=29.59 Aligned_cols=27 Identities=30% Similarity=0.952 Sum_probs=18.6
Q ss_pred ccccCCCCccchhhHHhhcCCCC--CCcc
Q 030551 89 MVLPNCCHAMCIKCYRNWNTKSE--SCPF 115 (175)
Q Consensus 89 ~~~~~C~H~fc~~Ci~~w~~~~~--~CP~ 115 (175)
..-+.|++.||..|-.+|-..+. +|..
T Consensus 44 v~C~~C~~~FC~~C~~~w~~~H~~~sC~~ 72 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQWEEQHRGRSCED 72 (86)
T ss_dssp EECTTTCCEECSSSCSBCCTTTTTSCHHH
T ss_pred eEeCCCCCccccccCCchhhcCCCCChHH
Confidence 34446999999999999933322 5644
No 115
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=62.44 E-value=2.9 Score=32.03 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=23.4
Q ss_pred CCcceecccCCCC----ccccCCCCccchhhHHhh
Q 030551 76 EDECGICLEPCTK----MVLPNCCHAMCIKCYRNW 106 (175)
Q Consensus 76 ~~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w 106 (175)
+..|.+|...|.. ---..||+.||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 4799999988864 223359999999997553
No 116
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=61.69 E-value=3.1 Score=32.15 Aligned_cols=31 Identities=23% Similarity=0.513 Sum_probs=23.8
Q ss_pred CCcceecccCCCC----ccccCCCCccchhhHHhh
Q 030551 76 EDECGICLEPCTK----MVLPNCCHAMCIKCYRNW 106 (175)
Q Consensus 76 ~~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w 106 (175)
...|.+|...|.. --...||+.||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 4689999988864 223469999999998654
No 117
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.48 E-value=9 Score=25.44 Aligned_cols=45 Identities=18% Similarity=0.387 Sum_probs=26.5
Q ss_pred CCCcceecccCCCCcccc--C--CC-CccchhhHHhhc--CCCCCCccccccc
Q 030551 75 REDECGICLEPCTKMVLP--N--CC-HAMCIKCYRNWN--TKSESCPFCRGSM 120 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~--~--C~-H~fc~~Ci~~w~--~~~~~CP~CR~~i 120 (175)
+..-| ||........+. . |. ..||..|+.--. .....||.|+..-
T Consensus 35 e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 44566 998754332221 3 55 589999995211 1234899997653
No 118
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=61.24 E-value=9.8 Score=23.89 Aligned_cols=46 Identities=17% Similarity=0.385 Sum_probs=27.2
Q ss_pred CCCCcceecccCCCCcccc--C--CC-CccchhhHHhhc--CCCCCCccccccc
Q 030551 74 EREDECGICLEPCTKMVLP--N--CC-HAMCIKCYRNWN--TKSESCPFCRGSM 120 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~--~--C~-H~fc~~Ci~~w~--~~~~~CP~CR~~i 120 (175)
.+..-| ||........+. . |. ..||..|+.--. .....||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 344667 898753332222 3 55 689999995211 1334899997654
No 119
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=59.16 E-value=5.3 Score=29.43 Aligned_cols=43 Identities=23% Similarity=0.638 Sum_probs=29.7
Q ss_pred CCCcceecccCCCCcccc--CCCCccchhhHHhhcCCC----------CCCcccc
Q 030551 75 REDECGICLEPCTKMVLP--NCCHAMCIKCYRNWNTKS----------ESCPFCR 117 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~--~C~H~fc~~Ci~~w~~~~----------~~CP~CR 117 (175)
.+.-|.||-+.-.-..-. .|...||..||..++... ..|=+|.
T Consensus 78 ~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 78 YQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp SBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 446788888754322222 588999999999886542 2688885
No 120
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=59.09 E-value=6.2 Score=32.99 Aligned_cols=45 Identities=20% Similarity=0.449 Sum_probs=31.2
Q ss_pred CcceecccCCCCcccc-CCCCccchhh--HHhh--cCCCCCCcccccccc
Q 030551 77 DECGICLEPCTKMVLP-NCCHAMCIKC--YRNW--NTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~-~C~H~fc~~C--i~~w--~~~~~~CP~CR~~i~ 121 (175)
..|++-...+..++.. .|.|.-|.+- +... ......||+|.+.+.
T Consensus 250 L~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 7899988888874443 5999866554 3333 234558999988764
No 121
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=58.96 E-value=6.5 Score=26.27 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=26.4
Q ss_pred CCcceecccCCCC---ccccCCCCccchhhHHhhc---CCCCCCccccc
Q 030551 76 EDECGICLEPCTK---MVLPNCCHAMCIKCYRNWN---TKSESCPFCRG 118 (175)
Q Consensus 76 ~~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w~---~~~~~CP~CR~ 118 (175)
...| ||-..... ..--.|.-.||..|+..=. .....||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3566 78665433 2333578899999985422 12348999963
No 122
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=58.57 E-value=4.1 Score=29.06 Aligned_cols=57 Identities=19% Similarity=0.432 Sum_probs=37.1
Q ss_pred CCCcceecccCCCC-----ccccCCCCccchhhHHhhcC----CCCCCcccccccccccCCCceee
Q 030551 75 REDECGICLEPCTK-----MVLPNCCHAMCIKCYRNWNT----KSESCPFCRGSMKRVNSEDLWVL 131 (175)
Q Consensus 75 ~~~~C~IC~~~~~~-----~~~~~C~H~fc~~Ci~~w~~----~~~~CP~CR~~i~~~~~~~~~~~ 131 (175)
....|.+|..++.. ..-..|.|.+|..|-..-.. ....|-+|+..-.....+..|+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~rel~~kSG~Wf~ 119 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQREVWKRSGAWFF 119 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHHHHHHHTSHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHHHHHHHhhhHHHH
Confidence 45789999998842 45567999999999864311 12379999765443333334433
No 123
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.28 E-value=10 Score=23.67 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=30.3
Q ss_pred CCCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 75 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
....|.-|-..+....+..-+..||..|. .|-.|+.+|.
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSSCEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccCcEEEECcceeCcCcC--------eeCCCCCCCC
Confidence 34789999988877556667888888885 7888988875
No 124
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=57.50 E-value=7 Score=32.55 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=31.4
Q ss_pred CCcceecccCCCCccc-cCCCCccchhhH--Hhh--cCCCCCCcccccccc
Q 030551 76 EDECGICLEPCTKMVL-PNCCHAMCIKCY--RNW--NTKSESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~~~~~-~~C~H~fc~~Ci--~~w--~~~~~~CP~CR~~i~ 121 (175)
...|++-...+..|+. ..|.|.-|.+-. ... ......||+|.+.+.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 3789998888877443 369998665543 333 234558999998775
No 125
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.85 E-value=12 Score=23.35 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=28.8
Q ss_pred CCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 76 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
...|.-|-..+....+..-+..||..|. .|-.|+.+|.
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDHF--------NCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTTS--------BCSSSCCBCC
T ss_pred CCCCccCCCEecceEEEECcceeCCCCC--------EeCCCCCccC
Confidence 4679999888777555657777887774 7888888876
No 126
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=56.65 E-value=4.6 Score=25.32 Aligned_cols=33 Identities=27% Similarity=0.513 Sum_probs=25.0
Q ss_pred CCCCCcceecccCCCCccccCC-CCccchhhHHhh
Q 030551 73 LEREDECGICLEPCTKMVLPNC-CHAMCIKCYRNW 106 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~C-~H~fc~~Ci~~w 106 (175)
.++..-|.||.+.....-.. | +-.||..|..+.
T Consensus 5 ~ee~pWC~ICneDAtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNEDATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSCCCEEETT-TTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCCCeEEecC-CCCceehHHHHHHH
Confidence 34557799999996644444 8 789999999775
No 127
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.89 E-value=1.2 Score=29.35 Aligned_cols=47 Identities=19% Similarity=0.327 Sum_probs=32.3
Q ss_pred CCCcceecccCCC---C--ccccCCCCccchhhHHhhcC--------CCCCCcccccccc
Q 030551 75 REDECGICLEPCT---K--MVLPNCCHAMCIKCYRNWNT--------KSESCPFCRGSMK 121 (175)
Q Consensus 75 ~~~~C~IC~~~~~---~--~~~~~C~H~fc~~Ci~~w~~--------~~~~CP~CR~~i~ 121 (175)
.+..|.+|...-. . ..--.|...||..|+.+-+. ....||.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4578999987632 2 33336888999999976433 3448999976554
No 128
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.29 E-value=8.6 Score=23.75 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=25.0
Q ss_pred CcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 77 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..|+-|-..+...++..-+..||.+|. .|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CCcccCCCEecCeeEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 468888777766555556777777774 6667766654
No 129
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=54.61 E-value=2.6 Score=35.19 Aligned_cols=46 Identities=22% Similarity=0.379 Sum_probs=0.0
Q ss_pred CCCcceecccCCCC----ccccCCCCccchhhHHhhcC-------CCCCCccccccc
Q 030551 75 REDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNT-------KSESCPFCRGSM 120 (175)
Q Consensus 75 ~~~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w~~-------~~~~CP~CR~~i 120 (175)
....|.+|...|.. -....||+.||..|...... ....|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 34689999988764 23346999999999865421 123576664433
No 130
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=54.06 E-value=12 Score=25.63 Aligned_cols=48 Identities=19% Similarity=0.321 Sum_probs=28.1
Q ss_pred CCCCCcceecccCCCCcccc--CCCCccchhhHHhhc---CCCCCCcccccccc
Q 030551 73 LEREDECGICLEPCTKMVLP--NCCHAMCIKCYRNWN---TKSESCPFCRGSMK 121 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~--~C~H~fc~~Ci~~w~---~~~~~CP~CR~~i~ 121 (175)
...+..|.+|.+.-.-..-- .|-..||..|+. .. .....||.|+..+.
T Consensus 12 ~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~-L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 12 QMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLN-LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp CSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGT-CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCCcCCCCCcEeEECCCCCCcccccccCc-CCcCCCCCEECCCCCCCcC
Confidence 34557799998532111111 377889999986 21 12236887765554
No 131
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=53.84 E-value=6.8 Score=24.66 Aligned_cols=47 Identities=21% Similarity=0.487 Sum_probs=31.0
Q ss_pred CCCCCcceecccCC---CC--ccccCCCCccchhhHHhhc--CCCCCCcccccc
Q 030551 73 LEREDECGICLEPC---TK--MVLPNCCHAMCIKCYRNWN--TKSESCPFCRGS 119 (175)
Q Consensus 73 ~~~~~~C~IC~~~~---~~--~~~~~C~H~fc~~Ci~~w~--~~~~~CP~CR~~ 119 (175)
...+..|.||...- .+ ..--.|.-.||..|+..-. .....||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 34557899998653 11 3334688899999996532 234479999653
No 132
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=51.30 E-value=14 Score=23.56 Aligned_cols=40 Identities=20% Similarity=0.362 Sum_probs=30.3
Q ss_pred CCCCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 74 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
.....|.-|-..+....+..-+..||.+|. .|-.|..+|.
T Consensus 23 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 62 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAVVKARDKYRHPECF--------VCADCNLNLK 62 (89)
T ss_dssp CSCCBCTTTCCBCCSCCEESSSCEECTTTC--------CCSSSCCCTT
T ss_pred CcCCCcccCCCEecccEEEECCceECccCC--------EecCCCCCCC
Confidence 344789999988877555557788888885 7888888875
No 133
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.96 E-value=7.3 Score=23.62 Aligned_cols=38 Identities=18% Similarity=0.479 Sum_probs=26.7
Q ss_pred CCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 76 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
...|.-|-..+....+..-+..||.+|. .|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNNSWHPECF--------RCDLCQEVLA 42 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTEEECTTTS--------BCSSSCCBCS
T ss_pred CCcCccCCCEecceEEEECcccccccCC--------EeCCCCCcCC
Confidence 3578888887766555556667777775 6778887775
No 134
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.28 E-value=12 Score=22.73 Aligned_cols=37 Identities=19% Similarity=0.428 Sum_probs=27.0
Q ss_pred CcceecccCCC--CccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 77 DECGICLEPCT--KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~--~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..|.-|-..+. ..++..-+..||..|. .|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHCF--------LCSGCEQPLG 44 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTTC--------BCTTTCCBTT
T ss_pred CCCccCCCccccCccEEEECccccCcccC--------eECCCCCcCC
Confidence 57888988877 3455556777887775 6788887775
No 135
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.14 E-value=5.6 Score=25.66 Aligned_cols=45 Identities=20% Similarity=0.489 Sum_probs=30.3
Q ss_pred CCCCCcceecccCCCC-----ccccCCCCccchhhHHhhcCCCCCCcccc
Q 030551 73 LEREDECGICLEPCTK-----MVLPNCCHAMCIKCYRNWNTKSESCPFCR 117 (175)
Q Consensus 73 ~~~~~~C~IC~~~~~~-----~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR 117 (175)
......|..|.+.+-. .+-..|.|..|.+|-..-......|-+|-
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~~~~~W~C~VC~ 71 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQESNGTWRCKVCS 71 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEECSTTCEEEHHHH
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccccccCCCCCEEEeeCc
Confidence 3455789999988753 55557999999999754333333566663
No 136
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.52 E-value=9.9 Score=23.74 Aligned_cols=37 Identities=16% Similarity=0.326 Sum_probs=27.5
Q ss_pred CcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 77 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..|..|-..+....+..-+..||.+|. .|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFMVAGEFKYHPECF--------ACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCCSCCBCCTTCCBCTTSC--------BCTTTCCBCC
T ss_pred CcCccCCCCcCceEEEECCceeccccC--------CccCCCCccC
Confidence 468888888776555556777777775 7888888774
No 137
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=46.88 E-value=6.7 Score=26.59 Aligned_cols=12 Identities=25% Similarity=0.930 Sum_probs=10.2
Q ss_pred ccchhhHHhhcC
Q 030551 97 AMCIKCYRNWNT 108 (175)
Q Consensus 97 ~fc~~Ci~~w~~ 108 (175)
.||..|+.+|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999953
No 138
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=46.76 E-value=6.7 Score=26.62 Aligned_cols=11 Identities=36% Similarity=1.208 Sum_probs=9.8
Q ss_pred ccchhhHHhhc
Q 030551 97 AMCIKCYRNWN 107 (175)
Q Consensus 97 ~fc~~Ci~~w~ 107 (175)
.||..|+.+|.
T Consensus 42 GFCRNCLskWy 52 (105)
T 2o35_A 42 GFCRNCLSNWY 52 (105)
T ss_dssp SCCHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 49999999994
No 139
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=46.45 E-value=9.6 Score=25.95 Aligned_cols=42 Identities=19% Similarity=0.498 Sum_probs=26.9
Q ss_pred CcceecccCCCC----ccccCCCCccchhhHHhhcCC----CCCCccccc
Q 030551 77 DECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTK----SESCPFCRG 118 (175)
Q Consensus 77 ~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w~~~----~~~CP~CR~ 118 (175)
..|.+|...-.+ ..--.|...||..|+.+-+.. ...||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 367788764211 233358889999999764332 347999874
No 140
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.94 E-value=8.5 Score=24.72 Aligned_cols=39 Identities=18% Similarity=0.399 Sum_probs=29.5
Q ss_pred CCCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 75 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
....|.-|-..+....+..-+..||..|. .|-.|+.+|.
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCccCCCEecceEEEECCccccccCC--------ccCCCCCCCC
Confidence 34689999888876555556778888775 7888988876
No 141
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=45.88 E-value=8.6 Score=28.84 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=28.9
Q ss_pred CcceecccCCCCc-------cccCCCCccchhhHHhh------cC-----CCCCCccccccc
Q 030551 77 DECGICLEPCTKM-------VLPNCCHAMCIKCYRNW------NT-----KSESCPFCRGSM 120 (175)
Q Consensus 77 ~~C~IC~~~~~~~-------~~~~C~H~fc~~Ci~~w------~~-----~~~~CP~CR~~i 120 (175)
..|+||.....+. .--.|...||..|..-- +. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 4699998765431 22358889999998321 11 145899998754
No 142
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.65 E-value=13 Score=22.38 Aligned_cols=37 Identities=22% Similarity=0.502 Sum_probs=25.4
Q ss_pred CcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 77 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..|.-|-..+....+..-+..||..|. .|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYREQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCSSEEESSSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCcccCCeeccceEEECccccCCCCC--------ccCCCCCcCC
Confidence 568888877766444546677777774 6777877764
No 143
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.35 E-value=13 Score=22.56 Aligned_cols=37 Identities=19% Similarity=0.433 Sum_probs=25.6
Q ss_pred CcceecccCCCC----ccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 77 DECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..|.-|-..+.. .++..-+..||.+|. .|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcceEEECCcccCcccC--------EeccCCCcCC
Confidence 568888887763 444446777777775 6777877764
No 144
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=44.52 E-value=16 Score=23.11 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=27.9
Q ss_pred CCCCcceecccCCCCc-c--cc--CCCCccchhhHHhhc---------CCCCCCcccccc
Q 030551 74 EREDECGICLEPCTKM-V--LP--NCCHAMCIKCYRNWN---------TKSESCPFCRGS 119 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~-~--~~--~C~H~fc~~Ci~~w~---------~~~~~CP~CR~~ 119 (175)
.+...| ||-...... . -- .|...||..|+.--. .....||.|+..
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 345667 788763331 1 11 588899999994221 124489999754
No 145
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.27 E-value=11 Score=22.68 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=25.5
Q ss_pred CcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 77 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..|.-|-..+....+..-+..||.+|. .|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITSGGITYQDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCTTCEEETTEEECTTTT--------BCTTTCCBCT
T ss_pred CCCcccCCEeCcceEEECccccccCcC--------EECCCCCCCC
Confidence 568888877765444445667777774 6888887775
No 146
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=43.68 E-value=12 Score=25.51 Aligned_cols=45 Identities=11% Similarity=0.054 Sum_probs=33.5
Q ss_pred CcceecccCCC---CccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 77 DECGICLEPCT---KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~---~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..|..|-..+. ......=|..||..|..+.......|-.|..+|.
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 67888887775 2334446778999999876655558999999886
No 147
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=43.02 E-value=11 Score=23.36 Aligned_cols=44 Identities=18% Similarity=0.475 Sum_probs=26.9
Q ss_pred CCCCcceecccCCCCc---cccCCCCccchhhHHhhc---CCCCCCccccc
Q 030551 74 EREDECGICLEPCTKM---VLPNCCHAMCIKCYRNWN---TKSESCPFCRG 118 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~---~~~~C~H~fc~~Ci~~w~---~~~~~CP~CR~ 118 (175)
.+...| ||....... .--.|...||..|+.--. .....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 344667 887765431 222478889999984321 12347998864
No 148
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=42.43 E-value=8.1 Score=24.11 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=27.1
Q ss_pred CCCCcceecccCCCC----ccccCCCCccchhhHHhh----cCCCCCCcccccc
Q 030551 74 EREDECGICLEPCTK----MVLPNCCHAMCIKCYRNW----NTKSESCPFCRGS 119 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w----~~~~~~CP~CR~~ 119 (175)
.+...| ||.....+ ..--.|...||..|+.-- ......||.|+..
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 344667 68766432 222357888999998432 1233489999653
No 149
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=42.09 E-value=14 Score=23.19 Aligned_cols=43 Identities=23% Similarity=0.416 Sum_probs=27.4
Q ss_pred CCcceecccCCCC---ccccCCCCccchhhHHhh---------cCCCCCCcccccc
Q 030551 76 EDECGICLEPCTK---MVLPNCCHAMCIKCYRNW---------NTKSESCPFCRGS 119 (175)
Q Consensus 76 ~~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w---------~~~~~~CP~CR~~ 119 (175)
...| ||...... +.--.|...||..|+.-- ......||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3556 78776543 222258889999998321 1245689999654
No 150
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=41.47 E-value=8.2 Score=23.07 Aligned_cols=37 Identities=19% Similarity=0.476 Sum_probs=26.0
Q ss_pred CcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 77 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..|+.|-..+....+..-+..||..|. .|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEHF--------VCAKCEKPFL 42 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTTC--------BCTTTCCBCS
T ss_pred CCCcccCCEecceEEEECccccccCcC--------EECCCCCCCC
Confidence 568888877666555556677777774 6888887775
No 151
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=39.57 E-value=7.4 Score=23.56 Aligned_cols=43 Identities=19% Similarity=0.404 Sum_probs=24.4
Q ss_pred CCCcceecccCCCCcccc--C--CC-CccchhhHHhh--cCCCCCCccccc
Q 030551 75 REDECGICLEPCTKMVLP--N--CC-HAMCIKCYRNW--NTKSESCPFCRG 118 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~--~--C~-H~fc~~Ci~~w--~~~~~~CP~CR~ 118 (175)
+..-| ||........+. . |. ..||..|+.-- -.....||.|+.
T Consensus 9 e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 34556 887753332222 3 54 57999999621 112347998864
No 152
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.43 E-value=8.7 Score=24.06 Aligned_cols=38 Identities=21% Similarity=0.624 Sum_probs=26.6
Q ss_pred CCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 76 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
...|+-|-..+...++..-+..||..|. +|..|+.+|.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILDRILRAMGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTTC--------BCSSSCCBCT
T ss_pred CCccccCCCeecceeEEECCccccHHhc--------CcccCCCccC
Confidence 3578888877766555556667777774 7888888775
No 153
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=39.40 E-value=3 Score=20.58 Aligned_cols=11 Identities=27% Similarity=0.933 Sum_probs=8.7
Q ss_pred ccchhhHHhhc
Q 030551 97 AMCIKCYRNWN 107 (175)
Q Consensus 97 ~fc~~Ci~~w~ 107 (175)
.||..|-.+|+
T Consensus 6 ffcetcskpwl 16 (26)
T 1loi_A 6 FFCETCSKPWL 16 (26)
T ss_dssp HHHHTSSCTTG
T ss_pred HHHHhcCCchh
Confidence 47888888885
No 154
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=39.28 E-value=7.4 Score=23.51 Aligned_cols=43 Identities=19% Similarity=0.390 Sum_probs=24.6
Q ss_pred CCCcceecccCCCCccc--cC--CC-CccchhhHHhhc--CCCCCCccccc
Q 030551 75 REDECGICLEPCTKMVL--PN--CC-HAMCIKCYRNWN--TKSESCPFCRG 118 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~--~~--C~-H~fc~~Ci~~w~--~~~~~CP~CR~ 118 (175)
+..-| +|........+ -. |. ..||..|+.--. .....||.|+.
T Consensus 8 e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 34556 88775333211 23 55 689999995211 12347999864
No 155
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.73 E-value=10 Score=23.46 Aligned_cols=37 Identities=19% Similarity=0.419 Sum_probs=25.3
Q ss_pred CcceecccCCCC----ccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 77 DECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..|+.|-..+.. ..+..-+..||.+|. .|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccC--------ChhhCCCcCC
Confidence 468888887764 444446667777775 6777777764
No 156
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.04 E-value=15 Score=22.86 Aligned_cols=37 Identities=14% Similarity=0.443 Sum_probs=26.8
Q ss_pred CcceecccCCC--CccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 77 DECGICLEPCT--KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~--~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..|..|-..+. ..++..-+..||..|. .|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDCF--------TCSNCKQVIG 54 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTTC--------CCSSSCCCCT
T ss_pred CcCccCCcccccCceEEEECccccccccC--------chhhCCCccC
Confidence 57888888877 4445546777777775 7888887775
No 157
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.80 E-value=15 Score=22.71 Aligned_cols=37 Identities=16% Similarity=0.365 Sum_probs=26.1
Q ss_pred CcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 77 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..|..|-..+....+..-+..||..|. .|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQGGVTYRDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSCCEESSSSEECTTTC--------BCSSSCCBCT
T ss_pred CcCCCCCCEecCcEEEECCchhhhhhC--------CcccCCCcCC
Confidence 568888877766555556777777774 6888888774
No 158
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=36.24 E-value=16 Score=24.85 Aligned_cols=29 Identities=17% Similarity=0.469 Sum_probs=19.0
Q ss_pred CcceecccCCC---------C-ccccCCCCccchhhHHh
Q 030551 77 DECGICLEPCT---------K-MVLPNCCHAMCIKCYRN 105 (175)
Q Consensus 77 ~~C~IC~~~~~---------~-~~~~~C~H~fc~~Ci~~ 105 (175)
..|.+|+..-. . ..-..|+..||..|+..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~ 40 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQF 40 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCC
Confidence 35888876431 1 33346899999999854
No 159
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.19 E-value=11 Score=23.61 Aligned_cols=37 Identities=19% Similarity=0.416 Sum_probs=25.5
Q ss_pred CcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 77 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..|+.|-..+...++..-+..||.+|. .|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~wH~~CF--------~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVSALGKTYHPDCF--------VCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTTS--------SCSSSCCCCC
T ss_pred CcCccccCEeccceEEECCceeCccCC--------ccccCCCCCC
Confidence 478888887766555556667777774 6777777764
No 160
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=35.78 E-value=17 Score=28.18 Aligned_cols=42 Identities=24% Similarity=0.458 Sum_probs=24.7
Q ss_pred CcceecccCCCC---ccccCCCCccchhhHHhhcC----C-CCCCccccc
Q 030551 77 DECGICLEPCTK---MVLPNCCHAMCIKCYRNWNT----K-SESCPFCRG 118 (175)
Q Consensus 77 ~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w~~----~-~~~CP~CR~ 118 (175)
..|.+|...-.. ..--.|...||..|+.+=+. . .-.||.|+.
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 468888764222 33336888999999985332 2 347999965
No 161
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.48 E-value=21 Score=22.15 Aligned_cols=37 Identities=19% Similarity=0.380 Sum_probs=25.6
Q ss_pred CcceecccCCC--CccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 77 DECGICLEPCT--KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~--~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..|..|-..+. ..++..=+..||..|. .|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFYEDRHFHEGCF--------RCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCCSSCCCBTTTS--------BCTTTCCBCS
T ss_pred CcCccCCCccccCcEEEEeCCccccccCC--------eecCCCCccC
Confidence 57888888776 3444445677777775 6777877775
No 162
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=34.72 E-value=17 Score=21.08 Aligned_cols=40 Identities=18% Similarity=0.384 Sum_probs=23.4
Q ss_pred cceecccCCCC----cccc-CCCCccchhhHHhh----cCCCCCCcccc
Q 030551 78 ECGICLEPCTK----MVLP-NCCHAMCIKCYRNW----NTKSESCPFCR 117 (175)
Q Consensus 78 ~C~IC~~~~~~----~~~~-~C~H~fc~~Ci~~w----~~~~~~CP~CR 117 (175)
.|.+|..+..+ ..-- .|.-.||..|+.-- ......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 46677776543 1112 47778999998321 12445788885
No 163
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=33.57 E-value=11 Score=27.52 Aligned_cols=45 Identities=20% Similarity=0.438 Sum_probs=28.4
Q ss_pred CCCCcceecccCCCC----ccccCCCCccchhhHHhh-----cCCCCCCcccccc
Q 030551 74 EREDECGICLEPCTK----MVLPNCCHAMCIKCYRNW-----NTKSESCPFCRGS 119 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~----~~~~~C~H~fc~~Ci~~w-----~~~~~~CP~CR~~ 119 (175)
.+...| +|...... ..--.|...||..|+.-- ......||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 345678 89876431 222358889999999421 1234589999764
No 164
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.30 E-value=28 Score=20.92 Aligned_cols=38 Identities=21% Similarity=0.563 Sum_probs=25.9
Q ss_pred CCcceecccCCCC--ccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 76 EDECGICLEPCTK--MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~~--~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
...|..|-..+.. .++..-+..||..|. .|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEECCCeEcccCC--------cccccCCcCC
Confidence 3578888887663 344446777777775 6788887774
No 165
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=33.08 E-value=15 Score=25.03 Aligned_cols=46 Identities=13% Similarity=0.288 Sum_probs=31.7
Q ss_pred CCcceecccCCCC---ccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 76 EDECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
-..|..|-..+.. .....=|..+|..|..+.......|..|..+|.
T Consensus 29 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 29 CLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 3678888777742 333345778899998775544447999988875
No 166
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=33.01 E-value=14 Score=23.60 Aligned_cols=41 Identities=24% Similarity=0.489 Sum_probs=24.6
Q ss_pred cceecccCCCC---ccccCCCCccchhhHHhhcCC----C-CCCccccc
Q 030551 78 ECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTK----S-ESCPFCRG 118 (175)
Q Consensus 78 ~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w~~~----~-~~CP~CR~ 118 (175)
.|.+|...-.. ..--.|...||..|+.+-+.. . -.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 46666654332 222257888999999764322 2 47888864
No 167
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.85 E-value=11 Score=23.17 Aligned_cols=38 Identities=13% Similarity=0.339 Sum_probs=26.3
Q ss_pred CCcceecccCCC-CccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 76 EDECGICLEPCT-KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~-~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
...|..|-..+. ...+..-+..||..|. .|..|+.+|.
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF--------~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFCL--------KCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTTC--------BCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCCC--------CCCCCCCccC
Confidence 357999988876 3333345667777774 7888888875
No 168
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.37 E-value=13 Score=23.00 Aligned_cols=37 Identities=24% Similarity=0.500 Sum_probs=25.3
Q ss_pred CcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 77 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..|+.|-..+....+..-+..||.+|. .|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 1x3h_A 16 PKCGGCNRPVLENYLSAMDTVWHPECF--------VCGDCFTSFS 52 (80)
T ss_dssp CBCTTTCCBCCSSCEEETTEEECTTTC--------BCSSSCCBSC
T ss_pred CccccCCCeecceeEEECCCeEecCcC--------ChhhCCCCCC
Confidence 468888777766444445666666664 7888888775
No 169
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=32.16 E-value=17 Score=23.97 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=25.1
Q ss_pred CCCCcceecccCCCCccc--cCCC---CccchhhHHhh--cCCCCCCcc-ccc
Q 030551 74 EREDECGICLEPCTKMVL--PNCC---HAMCIKCYRNW--NTKSESCPF-CRG 118 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~--~~C~---H~fc~~Ci~~w--~~~~~~CP~-CR~ 118 (175)
.+..-| ||........+ -.|. ..||..|+.-- -.....||. |+.
T Consensus 24 ~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 344567 89864333222 2333 57999998421 123448999 974
No 170
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=31.82 E-value=4.4 Score=26.50 Aligned_cols=40 Identities=23% Similarity=0.627 Sum_probs=21.3
Q ss_pred CcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 77 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..|+.|-..+... =++.+|..|-..+.... -||-|.+++.
T Consensus 3 ~~CP~C~~~l~~~----~~~~~C~~C~~~~~~~a-fCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERN----GDTAHCETCAKDFSLQA-LCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEEC----SSEEECTTTCCEEEEEE-ECSSSCSCCC
T ss_pred CCCCCCCCccccC----CCceECccccccCCCcc-cCcchhhHHH
Confidence 4678887665421 11334666654433322 6777766664
No 171
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.29 E-value=16 Score=22.08 Aligned_cols=37 Identities=14% Similarity=0.365 Sum_probs=25.4
Q ss_pred CcceecccCCCC--ccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 77 DECGICLEPCTK--MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~--~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..|..|-..+.. .++..-+..||..|. .|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETCF--------ICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTTT--------CCSSSCCCCC
T ss_pred CCCccCCCcccCCceEEEECcCeecccCC--------cccccCCccC
Confidence 478888887773 344446667777775 6778877765
No 172
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=31.03 E-value=26 Score=22.60 Aligned_cols=43 Identities=23% Similarity=0.494 Sum_probs=30.4
Q ss_pred CcceecccCCCC-ccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 77 DECGICLEPCTK-MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~-~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..|..|...+.. .....=|..||..|..+. ....|..|..+|.
T Consensus 34 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 77 (101)
T 2cup_A 34 FRCAKCLHPLANETFVAKDNKILCNKCTTRE--DSPKCKGCFKAIV 77 (101)
T ss_dssp CCCSSSCCCTTSSCCEEETTEEECHHHHTTC--CCCBCSSSCCBCC
T ss_pred CcccccCCCCCcCeeECcCCEEEChhHhhhh--cCCccccCCCccc
Confidence 678888777654 233345778899998543 3568999988875
No 173
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=30.98 E-value=16 Score=26.31 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=16.4
Q ss_pred cccCCCCccchhhHHhhcCCCCCCcccccccccc
Q 030551 90 VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRV 123 (175)
Q Consensus 90 ~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~~ 123 (175)
....|||.|=.. .....||.|..++.++
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~~~~ 161 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKVKLI 161 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBEEEC
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCcceeC
Confidence 334577766322 2233799998886543
No 174
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.71 E-value=21 Score=22.66 Aligned_cols=42 Identities=21% Similarity=0.426 Sum_probs=26.6
Q ss_pred CcceecccCCCC---ccccCCCCccchhhHHhhcC----C-CCCCccccc
Q 030551 77 DECGICLEPCTK---MVLPNCCHAMCIKCYRNWNT----K-SESCPFCRG 118 (175)
Q Consensus 77 ~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w~~----~-~~~CP~CR~ 118 (175)
..|.+|...-.. ..--.|...||..|+.+=+. . .-.||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 378888754222 23336888999999975322 2 347888854
No 175
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.28 E-value=29 Score=21.71 Aligned_cols=39 Identities=18% Similarity=0.428 Sum_probs=27.0
Q ss_pred CCCcceecccCCCC-ccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 75 REDECGICLEPCTK-MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 75 ~~~~C~IC~~~~~~-~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
....|.-|-..+.. ..+..-+..||.+|. .|-.|+.+|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLALDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEECCcccccccC--------CcCcCCCCcC
Confidence 44689999988763 233335667777775 7888888775
No 176
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=30.14 E-value=30 Score=23.49 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=21.1
Q ss_pred CcceecccCCCC--ccccCCCCccchhhHHhhcCCCCCCcccccc
Q 030551 77 DECGICLEPCTK--MVLPNCCHAMCIKCYRNWNTKSESCPFCRGS 119 (175)
Q Consensus 77 ~~C~IC~~~~~~--~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~ 119 (175)
+.|..|-..+.. .....=+..+|..|..+... ..|..|...
T Consensus 37 F~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~--~~~~~~~~~ 79 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK--INGGSGGSG 79 (123)
T ss_dssp CBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH--HHTCCCCCC
T ss_pred CccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc--cccCCCCCC
Confidence 566666666521 23333466677777655432 244444433
No 177
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=30.03 E-value=25 Score=23.77 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=31.0
Q ss_pred CcceecccCCCC-ccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 77 DECGICLEPCTK-MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~-~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..|..|...+.. .....=|..+|..|..+.. ...|+.|..+|.
T Consensus 31 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~ 74 (126)
T 2xqn_T 31 FCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH--AVVCQGCHNAID 74 (126)
T ss_dssp SBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS--CCBCTTTCSBCC
T ss_pred CCcCCCCCCCCcCEEEeECCEEechHHhCcCc--CccCcccCCcCC
Confidence 678888777765 3333457788999987643 458999998886
No 178
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=29.42 E-value=43 Score=21.01 Aligned_cols=43 Identities=19% Similarity=0.383 Sum_probs=27.0
Q ss_pred CcceecccCCC-C---ccccCCCCccchhhHHhh---c--CCCCCCccccccc
Q 030551 77 DECGICLEPCT-K---MVLPNCCHAMCIKCYRNW---N--TKSESCPFCRGSM 120 (175)
Q Consensus 77 ~~C~IC~~~~~-~---~~~~~C~H~fc~~Ci~~w---~--~~~~~CP~CR~~i 120 (175)
..| ||..+.. . +.--.|...||..|+.-- . .....||.|+...
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 455 8877653 1 222358889999999321 1 1345899997654
No 179
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.09 E-value=53 Score=20.41 Aligned_cols=39 Identities=23% Similarity=0.430 Sum_probs=25.2
Q ss_pred CCCcceecccCCCC-ccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 75 REDECGICLEPCTK-MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 75 ~~~~C~IC~~~~~~-~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
....|.-|-..+.. -.+..-+..||..|. .|-.|+.+|.
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF--------~C~~C~~~L~ 53 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCF--------RCHTCEATLW 53 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTTC--------BCSSSCCBCC
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCcC--------EEcCCCCCcC
Confidence 44689999887743 222335666777774 6777777664
No 180
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=28.99 E-value=3.6 Score=27.89 Aligned_cols=43 Identities=21% Similarity=0.416 Sum_probs=29.2
Q ss_pred CcceecccCCCCccccCCCCccchhhHHhhcCCCCCCccccccccccc
Q 030551 77 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVN 124 (175)
Q Consensus 77 ~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~~~~ 124 (175)
..||.|-..+... =++.+|..|-..+. ....||-|.+++..+.
T Consensus 33 ~~CP~Cq~eL~~~----g~~~hC~~C~~~f~-~~a~CPdC~q~LevLk 75 (101)
T 2jne_A 33 LHCPQCQHVLDQD----NGHARCRSCGEFIE-MKALCPDCHQPLQVLK 75 (101)
T ss_dssp CBCSSSCSBEEEE----TTEEEETTTCCEEE-EEEECTTTCSBCEEEE
T ss_pred ccCccCCCcceec----CCEEECccccchhh-ccccCcchhhHHHHHH
Confidence 6899998775421 23445888876532 3348999999987554
No 181
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=28.29 E-value=31 Score=23.61 Aligned_cols=38 Identities=16% Similarity=0.341 Sum_probs=28.7
Q ss_pred CCcceecccCCCCc-cccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 76 EDECGICLEPCTKM-VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~~~-~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
...|.-|-..+... ++..-+..||..|. .|-.|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEccccc--------CcCcCCCccc
Confidence 46899999887764 35556777888875 7888988875
No 182
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=28.13 E-value=28 Score=21.31 Aligned_cols=30 Identities=20% Similarity=0.501 Sum_probs=20.2
Q ss_pred CCCCcceecccCCCC----cccc-CCCCccchhhH
Q 030551 74 EREDECGICLEPCTK----MVLP-NCCHAMCIKCY 103 (175)
Q Consensus 74 ~~~~~C~IC~~~~~~----~~~~-~C~H~fc~~Ci 103 (175)
+....|++|..+..+ +.-- .|.-.||..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 344689999987653 2222 58889999998
No 183
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.12 E-value=30 Score=21.04 Aligned_cols=38 Identities=13% Similarity=0.401 Sum_probs=26.8
Q ss_pred CCcceecccCCC--CccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 76 EDECGICLEPCT--KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~--~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
...|+-|-..+. ..++..-+..||..|. .|-.|+.++.
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 50 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSNGELYHEQCF--------VCAQCFQQFP 50 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEETTEEECTTTC--------CCTTTCCCCG
T ss_pred CCCchhcCCccCCCceEEEeCccEeccccC--------eECCCCCCCC
Confidence 468999988875 3444446777777774 6778887775
No 184
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=27.12 E-value=21 Score=32.65 Aligned_cols=23 Identities=30% Similarity=0.797 Sum_probs=15.8
Q ss_pred cchhhHHhhcCC--------CCCCccccccc
Q 030551 98 MCIKCYRNWNTK--------SESCPFCRGSM 120 (175)
Q Consensus 98 fc~~Ci~~w~~~--------~~~CP~CR~~i 120 (175)
+|..|..++..- -..||.|-=.+
T Consensus 158 mC~~C~~EY~dp~dRRfhAqp~aC~~CGP~l 188 (772)
T 4g9i_A 158 MCDFCRSEYEDPLNRRYHAEPTACPVCGPSY 188 (772)
T ss_dssp CCHHHHHHHHCSSSTTTTCTTCCCTTTSCCE
T ss_pred CChhHHHHhCCCCCCCCcCCCCCCccCCceE
Confidence 499999998321 12899995444
No 185
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=27.10 E-value=45 Score=23.88 Aligned_cols=44 Identities=14% Similarity=0.298 Sum_probs=29.9
Q ss_pred CCcceecccCCCCccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 76 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
-..|..|...+.......=|..||..|..+.. ...|..|..+|.
T Consensus 33 CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~~C~~C~~~I~ 76 (169)
T 2rgt_A 33 CLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIP 76 (169)
T ss_dssp TSBCTTTCCBCCSCCEESSSCEECHHHHHHHH--SCBCTTTCCBCC
T ss_pred cCccCCCCCcCCCCCcccCCeeeecccccccc--cccccccccccC
Confidence 37888888777653234467788998886643 347888877764
No 186
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=26.70 E-value=28 Score=21.61 Aligned_cols=41 Identities=24% Similarity=0.495 Sum_probs=25.0
Q ss_pred cceecccCCCC---ccccCCCCccchhhHHhhcC----C-CCCCccccc
Q 030551 78 ECGICLEPCTK---MVLPNCCHAMCIKCYRNWNT----K-SESCPFCRG 118 (175)
Q Consensus 78 ~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w~~----~-~~~CP~CR~ 118 (175)
.|.+|...-.. ..--.|...||..|+.+=+. . .-.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 45677643222 22225788999999975322 2 347898864
No 187
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=26.56 E-value=17 Score=19.60 Aligned_cols=11 Identities=36% Similarity=0.709 Sum_probs=8.0
Q ss_pred CCCcccccccc
Q 030551 111 ESCPFCRGSMK 121 (175)
Q Consensus 111 ~~CP~CR~~i~ 121 (175)
..||.|.+.+.
T Consensus 6 FiCP~C~~~l~ 16 (34)
T 3mjh_B 6 FICPQCMKSLG 16 (34)
T ss_dssp EECTTTCCEES
T ss_pred cCCcHHHHHcC
Confidence 36888877664
No 188
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=26.49 E-value=10 Score=28.01 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=24.7
Q ss_pred CcceecccCCCC---ccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 77 DECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
+.|..|...+.. .....=|..||..|..+.......|+.|..+|.
T Consensus 33 F~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp CBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred cccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 566666555432 222334566777777654332225777776664
No 189
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=26.35 E-value=30 Score=23.62 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=17.0
Q ss_pred cccCCCCccchhhHHhhcCCCC-CCccccccccc
Q 030551 90 VLPNCCHAMCIKCYRNWNTKSE-SCPFCRGSMKR 122 (175)
Q Consensus 90 ~~~~C~H~fc~~Ci~~w~~~~~-~CP~CR~~i~~ 122 (175)
.-..|||.|-. ..... .||.|..+...
T Consensus 75 ~C~~CG~~~e~------~~~~~~~CP~Cgs~~~~ 102 (119)
T 2kdx_A 75 ECKDCSHVFKP------NALDYGVCEKCHSKNVI 102 (119)
T ss_dssp ECSSSSCEECS------CCSTTCCCSSSSSCCCE
T ss_pred EcCCCCCEEeC------CCCCCCcCccccCCCcE
Confidence 33457776644 23456 89999887543
No 190
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=25.90 E-value=38 Score=24.60 Aligned_cols=25 Identities=12% Similarity=0.295 Sum_probs=15.3
Q ss_pred CCccchhhHHhhcCCCCCCcccccccc
Q 030551 95 CHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 95 ~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
|..||..|..+. ....|..|..+|.
T Consensus 106 g~~yC~~~y~~~--f~~kC~~C~~~I~ 130 (182)
T 2jtn_A 106 ESVYCKDDFFKR--FGTKCAACQLGIP 130 (182)
T ss_dssp TEEECHHHHHHT--TSCCCTTTCCCCC
T ss_pred CEeeecCccccc--cccccccCCCccC
Confidence 445566666442 2347888887775
No 191
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.19 E-value=28 Score=23.30 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=22.0
Q ss_pred CCcceecccCCCC---ccccCCCCccchhhHHhhcC
Q 030551 76 EDECGICLEPCTK---MVLPNCCHAMCIKCYRNWNT 108 (175)
Q Consensus 76 ~~~C~IC~~~~~~---~~~~~C~H~fc~~Ci~~w~~ 108 (175)
-..|..|...+.. .....=|..||..|..+...
T Consensus 30 CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 30 CLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG 65 (114)
T ss_dssp TCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHT
T ss_pred cCcccccCCchhcCCCeeEEECCeeechHHHHHHhC
Confidence 3678888777752 33344577888888866543
No 192
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=24.94 E-value=16 Score=22.38 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=20.8
Q ss_pred CcceecccCCCC-ccccCCCCccch-hhHHhhcCCCCCCccccc
Q 030551 77 DECGICLEPCTK-MVLPNCCHAMCI-KCYRNWNTKSESCPFCRG 118 (175)
Q Consensus 77 ~~C~IC~~~~~~-~~~~~C~H~fc~-~Ci~~w~~~~~~CP~CR~ 118 (175)
..|..|...+.. .....=+..+|. .|..+.. ...|..|..
T Consensus 28 F~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f--~~~C~~C~~ 69 (76)
T 1iml_A 28 LKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF--GPKGFGRGG 69 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS--SCCCSSCCC
T ss_pred CCccccCccCCCCceECcCCeEeeCHHHHHHHh--CccCCCcCC
Confidence 566666665544 222234566676 4765432 235666643
No 193
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=24.89 E-value=21 Score=21.86 Aligned_cols=37 Identities=22% Similarity=0.492 Sum_probs=24.9
Q ss_pred CcceecccCCCC-----ccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 77 DECGICLEPCTK-----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 77 ~~C~IC~~~~~~-----~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
..|+-|-..+.. ..+..=+..||..|. .|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 57 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCF--------HCKKCSVNLA 57 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTTC--------BCSSSCCBCT
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCcccC--------EehhcCCCCC
Confidence 568888877663 334435666777764 7888888775
No 194
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=23.73 E-value=30 Score=23.61 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=23.8
Q ss_pred CCCCCcccccccccccCCCceeecCCCCCCCCcccChHHHHHHHHHh
Q 030551 109 KSESCPFCRGSMKRVNSEDLWVLTCTDDVIDPETVSKEDLLRFYLYI 155 (175)
Q Consensus 109 ~~~~CP~CR~~i~~~~~~~~~~~~~~~~~~d~~~~~~e~l~r~~~~i 155 (175)
..+.||.||+....+..+..-.... + +.....+++.+..++...
T Consensus 11 ~~p~C~~c~ka~~~L~~~gi~~~~~--d-i~~~~~~~~eL~~~l~~~ 54 (121)
T 3rdw_A 11 HNPRCSKSRETLALVEQQGITPQVV--L-YLETPPSVDKLKELLQQL 54 (121)
T ss_dssp CCTTCHHHHHHHHHHHTTTCCCEEE--C-TTTSCCCHHHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHHHHcCCCcEEE--e-eccCCCcHHHHHHHHHhc
Confidence 4567888887776544333211110 1 122346777777776655
No 195
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=23.69 E-value=22 Score=31.91 Aligned_cols=23 Identities=22% Similarity=0.753 Sum_probs=16.0
Q ss_pred cchhhHHhhcCC--------CCCCccccccc
Q 030551 98 MCIKCYRNWNTK--------SESCPFCRGSM 120 (175)
Q Consensus 98 fc~~Ci~~w~~~--------~~~CP~CR~~i 120 (175)
+|..|..++..- -..||.|-=.+
T Consensus 69 mC~~C~~EY~dp~dRRfHAqp~aCp~CGP~l 99 (657)
T 3ttc_A 69 LCPACDKEYRDPLDRRFHAQPVACPECGPYL 99 (657)
T ss_dssp CCHHHHHHHHCTTSTTTTCTTCCCTTTSCCE
T ss_pred CChHHHHHhCCCCCCcCcCCCCcCcccCccc
Confidence 599999998321 12899995444
No 196
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.51 E-value=59 Score=20.53 Aligned_cols=39 Identities=18% Similarity=0.549 Sum_probs=23.3
Q ss_pred CCCcceecccCCCC-ccccCCCCccchhhHHhhcCCCCCCcccccccc
Q 030551 75 REDECGICLEPCTK-MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 121 (175)
Q Consensus 75 ~~~~C~IC~~~~~~-~~~~~C~H~fc~~Ci~~w~~~~~~CP~CR~~i~ 121 (175)
....|.-|-..+.. -.+..-+..||..|. .|-.|..+|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF--------~C~~C~~~L~ 53 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISCF--------RCSYCNNKLS 53 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTTC--------BCTTTCCBCC
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCCC--------eeCCCCCCCC
Confidence 34678888777653 223345666666664 5666666654
No 197
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=23.26 E-value=24 Score=32.19 Aligned_cols=23 Identities=35% Similarity=0.766 Sum_probs=16.1
Q ss_pred cchhhHHhhcCC--------CCCCccccccc
Q 030551 98 MCIKCYRNWNTK--------SESCPFCRGSM 120 (175)
Q Consensus 98 fc~~Ci~~w~~~--------~~~CP~CR~~i 120 (175)
+|..|..++..- -..||.|-=.+
T Consensus 163 mC~~C~~EY~dp~~RRfhAqp~aC~~CGP~l 193 (761)
T 3vth_A 163 MCEKCSREYHDPHDRRFHAQPVACFDCGPSL 193 (761)
T ss_dssp CCHHHHHHHTCTTSTTTTCTTCCCTTTSCCE
T ss_pred CCHHHHHHhcCcccccccCCCCcCCccCCee
Confidence 599999998432 12799995444
No 198
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=23.22 E-value=22 Score=20.58 Aligned_cols=26 Identities=19% Similarity=0.468 Sum_probs=16.9
Q ss_pred CCCCccchhhHHhh---cCCCCCCccccc
Q 030551 93 NCCHAMCIKCYRNW---NTKSESCPFCRG 118 (175)
Q Consensus 93 ~C~H~fc~~Ci~~w---~~~~~~CP~CR~ 118 (175)
.|..-||..|+.-- ....-.||.|+.
T Consensus 23 ~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 23 ECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred CCCccccccccCCCcccCCCcEECcCCCC
Confidence 47788899998422 123347888864
No 199
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=23.03 E-value=16 Score=22.16 Aligned_cols=43 Identities=23% Similarity=0.488 Sum_probs=24.8
Q ss_pred CCCcceecccCCCCccc--cC--CC-CccchhhHHhhc--CCCCCCccccc
Q 030551 75 REDECGICLEPCTKMVL--PN--CC-HAMCIKCYRNWN--TKSESCPFCRG 118 (175)
Q Consensus 75 ~~~~C~IC~~~~~~~~~--~~--C~-H~fc~~Ci~~w~--~~~~~CP~CR~ 118 (175)
+..-| +|........+ -. |. ..||..|+.--. .....||.|+.
T Consensus 10 e~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCCCCeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 34556 88775333211 13 54 789999995211 12347999965
No 200
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=22.05 E-value=20 Score=18.41 Aligned_cols=11 Identities=27% Similarity=0.603 Sum_probs=8.2
Q ss_pred CCCcccccccc
Q 030551 111 ESCPFCRGSMK 121 (175)
Q Consensus 111 ~~CP~CR~~i~ 121 (175)
..||+|+....
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 37999987654
No 201
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.98 E-value=24 Score=23.58 Aligned_cols=11 Identities=27% Similarity=0.942 Sum_probs=8.4
Q ss_pred CCCcccccccc
Q 030551 111 ESCPFCRGSMK 121 (175)
Q Consensus 111 ~~CP~CR~~i~ 121 (175)
..||+|.+++.
T Consensus 48 ~~CPvCgs~l~ 58 (112)
T 1l8d_A 48 GKCPVCGRELT 58 (112)
T ss_dssp EECTTTCCEEC
T ss_pred CCCCCCCCcCC
Confidence 36999988775
No 202
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=20.95 E-value=19 Score=22.13 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=23.4
Q ss_pred CcceecccCCCC--cccc---CCCCccchhhHHhh----cC----CCCCCccccc
Q 030551 77 DECGICLEPCTK--MVLP---NCCHAMCIKCYRNW----NT----KSESCPFCRG 118 (175)
Q Consensus 77 ~~C~IC~~~~~~--~~~~---~C~H~fc~~Ci~~w----~~----~~~~CP~CR~ 118 (175)
..| ||-..... .+.= .|...||..|+.-- .. ....||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 456 78654433 2221 37778999998311 10 1347999974
Done!