Query 030552
Match_columns 175
No_of_seqs 132 out of 809
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 01:18:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030552.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030552hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hks_A EIF-5A-2, eukaryotic tr 100.0 1.7E-53 5.8E-58 344.8 18.4 157 1-173 9-165 (167)
2 3er0_A Eukaryotic translation 100.0 3.3E-52 1.1E-56 337.2 15.1 154 1-174 11-166 (167)
3 1x6o_A Eukaryotic initiation f 100.0 1.7E-50 5.8E-55 329.0 18.8 155 1-174 9-174 (174)
4 3cpf_A Eukaryotic translation 100.0 5E-47 1.7E-51 297.6 16.5 135 16-170 1-138 (138)
5 1iz6_A Initiation factor 5A; S 100.0 2.7E-44 9.1E-49 282.2 14.5 134 17-172 2-137 (138)
6 1bkb_A Translation initiation 100.0 1.5E-42 5.1E-47 271.1 16.6 130 19-169 6-135 (136)
7 2eif_A IF-5A, protein (eukaryo 100.0 2.8E-41 9.5E-46 264.3 15.4 131 16-171 5-135 (136)
8 1khi_A HEX1; membrane sealing, 100.0 7.2E-40 2.5E-44 266.8 15.3 140 11-173 24-173 (176)
9 3a5z_B EF-P, elongation factor 100.0 2.9E-38 9.8E-43 259.9 13.1 128 17-169 2-129 (191)
10 1ueb_A EF-P, TT0860, elongatio 100.0 2.1E-37 7.2E-42 253.3 14.6 122 22-169 2-123 (184)
11 3tre_A EF-P, elongation factor 100.0 1.7E-36 5.8E-41 249.3 16.0 124 21-169 6-129 (191)
12 1yby_A Translation elongation 100.0 2.2E-36 7.6E-41 252.8 13.8 124 21-169 31-154 (215)
13 3oyy_A EF-P, elongation factor 100.0 1.6E-35 5.6E-40 243.6 14.7 123 21-169 4-128 (191)
14 3qx1_A FAS-associated factor 1 43.7 27 0.00091 23.6 3.8 32 66-98 1-32 (84)
15 3f3b_A Phage-like element PBSX 28.4 26 0.0009 26.8 1.9 31 18-49 74-104 (126)
16 2f9h_A PTS system, IIA compone 24.8 58 0.002 24.6 3.3 17 25-41 53-69 (129)
17 2fhd_A RAD9 homolog, DNA repai 24.6 62 0.0021 25.5 3.4 41 22-77 59-110 (153)
18 3r8s_P 50S ribosomal protein L 23.9 1.4E+02 0.0048 22.2 5.2 68 23-104 15-88 (114)
19 2a2p_A Selenoprotein M, SELM p 22.9 64 0.0022 24.6 3.1 41 105-148 48-88 (129)
20 2bkf_A Zinc-finger protein NBR 21.6 1.5E+02 0.005 21.2 4.6 41 105-157 45-85 (87)
21 2ftc_K 39S ribosomal protein L 21.5 1.9E+02 0.0066 20.8 5.4 30 73-102 40-70 (98)
No 1
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=100.00 E-value=1.7e-53 Score=344.80 Aligned_cols=157 Identities=78% Similarity=1.246 Sum_probs=133.4
Q ss_pred CCccccccccccCCCcceeeEEeccccCCceEEEEcCeEeccccccCCccccCcccEEEEEeecCCCCcccEEEEEEEec
Q 030552 1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVSTSKTGKHGHAKCHFVGIDI 80 (175)
Q Consensus 1 m~~~~~~f~~~~~~~~s~t~~i~as~lrkG~~i~i~g~pck~~~~~~~~~~~~~~~Vve~~~~KpGKhG~Akv~~k~~ni 80 (175)
|||.||+|+ +++||||.||||+|++||+|++|+|+|+||+ |++++|+||||||+|+||+++|||
T Consensus 9 ~~~~~~~~~-~~~~gas~t~pi~~~dlrkG~~I~idG~P~~---------------Vve~~~~KpGKhG~A~vr~k~knl 72 (167)
T 3hks_A 9 MSDDEHHFE-ASESGASKTYPQSAGNIRKGGHIVIKNRPCK---------------VVEVSTSKTGKHGHAKCHFVAIDI 72 (167)
T ss_dssp ----------------CCEEEEEGGGCCTTSEEEETTEEEE---------------EEEEEEECSSTTCCCEEEEEEEET
T ss_pred cCccccccc-ccCCCCCccEEEEHHHccCCCEEEECCEEEE---------------EEEEEEeCCCCCCceEEEEEEEEc
Confidence 899999999 9999999999999999999999999999999 999999999999999999999999
Q ss_pred cCCcEEEEeecCCCceecceEEeeeeEEEEecCCccEEEecCCCCceecccCCcchhhHHHHHhhccCCCeEEEEEEeeC
Q 030552 81 FNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSM 160 (175)
Q Consensus 81 ~TGk~~e~~~~s~~~~e~p~v~r~~~q~ly~d~d~~~~fMd~~t~~~eqi~lp~~~~l~~~~~~~l~eg~~v~V~~~~~m 160 (175)
+||+++|++|||++++++|+|+|++|||||+++|++|+|||++||++.+++||.+++|.++++.||++|++|.|++|++|
T Consensus 73 ~TGk~~E~tf~s~~kve~~~ver~~~QyLY~d~d~~~~fMD~etyeQ~~l~lp~~~~lg~~i~~~l~eG~~v~V~v~~~m 152 (167)
T 3hks_A 73 FTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVMSSM 152 (167)
T ss_dssp TTCCEEEEEEETTSEEEEECCEEEEEEEEEECTTSBEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTEEEEEEEEEET
T ss_pred CCCCEEEEEEcCCCEEEeeeEEEEEEEEEEECCCCEEEEEcCCCceEEEEecCchHHHHHHHHHHhhCCCEEEEEEEeeC
Confidence 99999999999999999999999999999997766899999999955557899874466668899999999999999999
Q ss_pred CeeeEEEEeecCC
Q 030552 161 GEEQICALKDIGP 173 (175)
Q Consensus 161 GeE~v~~~k~~~~ 173 (175)
|+|+|+++|++.+
T Consensus 153 g~e~i~~~k~~~~ 165 (167)
T 3hks_A 153 GEEQICAVKEVGG 165 (167)
T ss_dssp TEEEEEEEEEEEE
T ss_pred CeEEEEEEEecCC
Confidence 9999999998654
No 2
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-52 Score=337.15 Aligned_cols=154 Identities=56% Similarity=0.954 Sum_probs=135.3
Q ss_pred CCccccccccccCCCcceeeEEeccccCCceEEEEcCeEeccccccCCccccCcccEEEEEeecCCCCcccEEEEEEEec
Q 030552 1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVSTSKTGKHGHAKCHFVGIDI 80 (175)
Q Consensus 1 m~~~~~~f~~~~~~~~s~t~~i~as~lrkG~~i~i~g~pck~~~~~~~~~~~~~~~Vve~~~~KpGKhG~Akv~~k~~ni 80 (175)
|||+||+|+ +++||||.||||+|++||+|++|+|+|+||+ |++++|+||||||+|+||++++||
T Consensus 11 ~~~~~~~~~-~~~~~as~t~pi~a~dlrkG~~I~idG~p~~---------------Vve~~~~KpGKHG~A~vr~k~knl 74 (167)
T 3er0_A 11 MSDEEHTFE-TADAGSSATYPMQCSALRKNGFVVIKSRPCK---------------IVDMSTSKTGKHGHAKVHLVAIDI 74 (167)
T ss_dssp ------------CCCCCCCEEEETTTCCTTCEEEETTEEEE---------------EEEEEEECCSSSSCCEEEEEEEES
T ss_pred ccccccccc-ccCCCCcceEEEEHHHccCCCEEEECCEEEE---------------EEEEEEeCCCCcCceEEEEEEEEc
Confidence 899999999 9999999999999999999999999999999 999999999999999999999999
Q ss_pred cCCcEEEEeecCCCceecceEEeeeeEEEEecCCccEEEec--CCCCceecccCCcchhhHHHHHhhccCCCeEEEEEEe
Q 030552 81 FNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLT--ETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMS 158 (175)
Q Consensus 81 ~TGk~~e~~~~s~~~~e~p~v~r~~~q~ly~d~d~~~~fMd--~~t~~~eqi~lp~~~~l~~~~~~~l~eg~~v~V~~~~ 158 (175)
+||+++|++|||++++++|.|+|++|||||+|++ +|+||| .++| ||+.||++. |.++++.||++|++|.|++|+
T Consensus 75 ~TG~k~E~tf~s~~kve~~~ver~~~QyLY~dg~-~~~FMD~~~ety--eqi~l~~~~-lgd~i~~~l~eg~~v~V~~~~ 150 (167)
T 3er0_A 75 FTGKKLEDLSPSTHNMEVPVVKRNEYQLLDIDDG-FLSLMNMDGDTK--DDVKAPEGE-LGDSLQTAFDEGKDLMVTIIS 150 (167)
T ss_dssp SSCCCEEEEEESSSEEEECCCCEEEEECCCCTTT-TCCCCCSSSCCC--SCCCCCCSS-HHHHHHHTTSSCCCCEEEEEE
T ss_pred CCCCEEEEEEcCCCccccceEEEeeEEEEEEcCC-EEEEEeCCCCee--EEEEcCHHH-HHHHHHHHhhCCCEEEEEEEh
Confidence 9999999999999999999999999999999887 899999 5666 999999875 555577899999999999999
Q ss_pred eCCeeeEEEEeecCCC
Q 030552 159 SMGEEQICALKDIGPK 174 (175)
Q Consensus 159 ~mGeE~v~~~k~~~~~ 174 (175)
+||+|+|+++|++...
T Consensus 151 ~mg~e~i~~~k~~~~~ 166 (167)
T 3er0_A 151 AMGEEAAISFKEAART 166 (167)
T ss_dssp ETTEEEEEEECCCCCC
T ss_pred hCCcEEEEEEEecCCC
Confidence 9999999999997654
No 3
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=100.00 E-value=1.7e-50 Score=329.00 Aligned_cols=155 Identities=45% Similarity=0.796 Sum_probs=126.2
Q ss_pred CCccc--cccccccCCCcceeeEEeccccCCceEEEEcCeEeccccccCCccccCcccEEEEEeecCCCCcccEEEEEEE
Q 030552 1 MSDEE--HHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVSTSKTGKHGHAKCHFVGI 78 (175)
Q Consensus 1 m~~~~--~~f~~~~~~~~s~t~~i~as~lrkG~~i~i~g~pck~~~~~~~~~~~~~~~Vve~~~~KpGKhG~Akv~~k~~ 78 (175)
|||+. ++|+ +++||+|.|||++|++||+|++|+|+|+||+ |++++|+||||||+|+||++++
T Consensus 9 ~~~~~~~~~~~-~~~~~as~t~~i~a~dlrkG~~I~idG~p~~---------------Vve~~~~KpGKgG~A~vr~k~k 72 (174)
T 1x6o_A 9 MSDEDHDFSHQ-GGGDNASKTYPLAAGALKKGGYVCINGRPCK---------------VIDLSVSKTGKHGHAKVSIVAT 72 (174)
T ss_dssp -------------------CEEEEEGGGCCTTCEEEETTEEEE---------------EEEEEECCC----CCEEEEEEE
T ss_pred cccccccccee-cCCCCCceeEEEEHHHccCCCEEEECCEEEE---------------EEEEEecCCCCCCceEEEEEEE
Confidence 67754 4799 9999999999999999999999999999999 9999999999999999999999
Q ss_pred eccCCcEEEEeecCCCceecceEEeeeeEEEEecCC------ccEEEecCCCCceecccC--CcchhhHHH-HHhhccCC
Q 030552 79 DIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISED------GFVSLLTETGNTKDDLRL--PTDENLLSQ-IKDGFAEG 149 (175)
Q Consensus 79 ni~TGk~~e~~~~s~~~~e~p~v~r~~~q~ly~d~d------~~~~fMd~~t~~~eqi~l--p~~~~l~~~-~~~~l~eg 149 (175)
||+||+++|++|||++++++|+|+|++|||||+++| |+|+|||++|| +|+.| |.+.. +++ |+.||+||
T Consensus 73 ni~TG~k~E~tf~s~~kve~~~Ver~~~QyLY~dgd~~~~~~g~~~fMD~ety--eq~~l~~p~~~~-lgd~i~~~l~eg 149 (174)
T 1x6o_A 73 DIFTGNRLEDQAPSTHNVEVPFVKTYTYSVLDIQANEDPSLPAHLSLMDDEGE--SREDLDMPPDPA-LATQIKEQFDSG 149 (174)
T ss_dssp ETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEECCSSTTSCCEEEEECTTSC--EECCCBCCSCHH-HHHHHHHHHHTT
T ss_pred ECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEEecCCcccccccEEEEEcCCCc--eEEEeeCCchhh-HHHHHHHHhhCC
Confidence 999999999999999999999999999999999998 79999999999 66666 77622 555 49999999
Q ss_pred CeEEEEEEeeCCeeeEEEEeecCCC
Q 030552 150 KDLVVTVMSSMGEEQICALKDIGPK 174 (175)
Q Consensus 150 ~~v~V~~~~~mGeE~v~~~k~~~~~ 174 (175)
++|.|++|++||+|+|+++|++..|
T Consensus 150 ~~v~V~~~~~mG~e~i~~~k~~~~~ 174 (174)
T 1x6o_A 150 KDVLVVVVSAMGTEQVLQTKNAAEK 174 (174)
T ss_dssp CCEEEEEEEETTEEEEEEEEECCC-
T ss_pred CEEEEEEEeeCCeEEEEEEEeccCC
Confidence 9999999999999999999998765
No 4
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=100.00 E-value=5e-47 Score=297.56 Aligned_cols=135 Identities=52% Similarity=0.907 Sum_probs=122.5
Q ss_pred cceeeEEeccccCCceEEEEcCeEeccccccCCccccCcccEEEEEeecCCCCcccEEEEEEEeccCCcEEEEeecCCCc
Q 030552 16 ASKTFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN 95 (175)
Q Consensus 16 ~s~t~~i~as~lrkG~~i~i~g~pck~~~~~~~~~~~~~~~Vve~~~~KpGKhG~Akv~~k~~ni~TGk~~e~~~~s~~~ 95 (175)
||.|||++|++||+|++|+++|+||+ |++++|+||||||+|+||++++||+||+++|++|||+++
T Consensus 1 ~~~t~~i~~~~lrkG~~i~~~g~p~~---------------Vve~~~~KpGKgG~A~vr~k~knl~TG~~~e~tf~s~~k 65 (138)
T 3cpf_A 1 GSATFPMQCSALRKNGFVVLKGRPCK---------------IVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHN 65 (138)
T ss_dssp -CCEEEEEGGGCCTTSEEEETTEEEE---------------EEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSE
T ss_pred CCccEEEEHHHCcCCCEEEECCEEEE---------------EEEEEeccCCCCccEEEEEEEEECCCCCEEEEEeCCCCE
Confidence 58899999999999999999999999 999999999999999999999999999999999999999
Q ss_pred eecceEEeeeeEEEEecCCccEEEecCCCCceeccc--CCcchhhHHHHH-hhccCCCeEEEEEEeeCCeeeEEEEee
Q 030552 96 CDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLR--LPTDENLLSQIK-DGFAEGKDLVVTVMSSMGEEQICALKD 170 (175)
Q Consensus 96 ~e~p~v~r~~~q~ly~d~d~~~~fMd~~t~~~eqi~--lp~~~~l~~~~~-~~l~eg~~v~V~~~~~mGeE~v~~~k~ 170 (175)
++.|+|+|++|||||+|++ +|+|||++|| ||+. ||.+. +++.. .||+||++|.|++|++||+|+|+++|.
T Consensus 66 ve~~~v~~~~~qyly~dg~-~~~fMD~ety--eq~~l~l~~~~--lgd~~~~~l~eg~~v~V~~~~~~g~e~~~~~k~ 138 (138)
T 3cpf_A 66 MDVPNIKRNDFQLIGIQDG-YLSLLQDSGE--VREDLRLPEGD--LGKEIEQKYDCGEEILITVLSAMTEEAAVAIKA 138 (138)
T ss_dssp EEEECCEEEEEEEEEEETT-EEEEECTTSC--EECCSBCCSHH--HHHHHHHHHHHTCCCEEEEEEETTEEEEEEEC-
T ss_pred EEeeEEEEEEEEEEEecCC-EEEEEcCCCC--eEeeecCCHHH--HHHHHHHHhhCCCEEEEEEEhhCCcEEEEEEeC
Confidence 9999999999999999987 8999999999 7777 78764 66655 999999999999999999999999873
No 5
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=2.7e-44 Score=282.23 Aligned_cols=134 Identities=28% Similarity=0.525 Sum_probs=126.1
Q ss_pred ceeeEEeccccCCceEEEEcCeEeccccccCCccccCcccEEEEEeecCCCCcccEEEEEEEeccCCcEEEEeecCCCce
Q 030552 17 SKTFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNC 96 (175)
Q Consensus 17 s~t~~i~as~lrkG~~i~i~g~pck~~~~~~~~~~~~~~~Vve~~~~KpGKhG~Akv~~k~~ni~TGk~~e~~~~s~~~~ 96 (175)
|.|||++|++||+|++|+++|+||+ |++++|+||||||+|++|++++||+||+++|++||+++++
T Consensus 2 ~~t~~i~a~~lkkG~~i~~~g~p~~---------------Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~v 66 (138)
T 1iz6_A 2 GDKTKVQVSKLKPGRYIIIDDEPCR---------------IVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEV 66 (138)
T ss_dssp CCEEEEEGGGCCTTSEEEETTEEEE---------------EEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEE
T ss_pred CceEEEEHHHccCCCEEEECCEEEE---------------EEEEEeecCCCCCceEEEEEEEECCCCCEEEEEecCCCEE
Confidence 6799999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ecceEEeeeeEEEEecCCccEEEecCCCCceecccC--CcchhhHHHHHhhccCCCeEEEEEEeeCCeeeEEEEeecC
Q 030552 97 DAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRL--PTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIG 172 (175)
Q Consensus 97 e~p~v~r~~~q~ly~d~d~~~~fMd~~t~~~eqi~l--p~~~~l~~~~~~~l~eg~~v~V~~~~~mGeE~v~~~k~~~ 172 (175)
+.|+|+|++|||||+|++ +|+|||++|| ||+.| |.+. ++++..||+||+. |+++.+||+++|+++|+.+
T Consensus 67 e~~~ve~~~~qylY~dg~-~~~fMD~ety--eq~~l~~~~~~--lgd~~~~l~e~~~--V~v~~~~G~~~i~~~k~~~ 137 (138)
T 1iz6_A 67 DVPIIDKKTAQVIAITPD-TVQIMDMETY--ETFEVPIDTGV--ADEIRDQLKEGIN--VEYWETLGRIKIMRIKGEG 137 (138)
T ss_dssp EEECCEEEEEEEEEECSS-EEEEECTTTC--CEEEEEHHHHB--CGGGTTTCCTTCE--EEEEEETTEEEEEEETTCC
T ss_pred eeceEEEEEEEEEEeCCC-EEEEEeCCCC--ceEEeeCCHHH--HHHHHHhCCCCCE--EEEEEECCcEEEEEEeecc
Confidence 999999999999999988 8999999999 88877 6654 8889999999987 6668889999999999854
No 6
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=1.5e-42 Score=271.15 Aligned_cols=130 Identities=29% Similarity=0.523 Sum_probs=122.8
Q ss_pred eeEEeccccCCceEEEEcCeEeccccccCCccccCcccEEEEEeecCCCCcccEEEEEEEeccCCcEEEEeecCCCceec
Q 030552 19 TFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDA 98 (175)
Q Consensus 19 t~~i~as~lrkG~~i~i~g~pck~~~~~~~~~~~~~~~Vve~~~~KpGKhG~Akv~~k~~ni~TGk~~e~~~~s~~~~e~ 98 (175)
|||++|++||+|++|+++|+||+ |++++|+||||||+|+||++++||+||+++|++|||+++++.
T Consensus 6 t~~i~~~~lrkG~~i~~~g~p~~---------------Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~ 70 (136)
T 1bkb_A 6 TKYVEAGELKEGSYVVIDGEPCR---------------VVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEV 70 (136)
T ss_dssp CEEEEGGGCCTTCEEEETTEEEE---------------EEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEE
T ss_pred EEEEEHHHccCCCEEEECCEEEE---------------EEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeee
Confidence 99999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred ceEEeeeeEEEEecCCccEEEecCCCCceecccCCcchhhHHHHHhhccCCCeEEEEEEeeCCeeeEEEEe
Q 030552 99 PHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 169 (175)
Q Consensus 99 p~v~r~~~q~ly~d~d~~~~fMd~~t~~~eqi~lp~~~~l~~~~~~~l~eg~~v~V~~~~~mGeE~v~~~k 169 (175)
|+|+|++|||||+|++ +|+|||++|| ||+.||.+.. ++++..||+||+. |+++.++|+++|+++|
T Consensus 71 ~~ve~~~~qylY~dg~-~~~fMD~ety--eq~~l~~~~~-~gd~~~~l~e~~~--v~v~~~~g~~~~~~~k 135 (136)
T 1bkb_A 71 PIIEKFTAQILSVSGD-VIQLMDMRDY--KTIEVPMKYV-EEEAKGRLAPGAE--VEVWQILDRYKIIRVK 135 (136)
T ss_dssp CCCEEEEEEEEEECSS-EEEEEETTTC--CEEEEEGGGB-CHHHHTTCCTTCE--EEEEEETTEEEEEEEC
T ss_pred ceEEEEEEEEEEecCC-EEEEEeCCCC--eEEEeccccc-hhHHHhhCCCCCE--EEEEEECCEEEEEEec
Confidence 9999999999999887 8999999999 9999987631 7899999999987 5557779999999998
No 7
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=100.00 E-value=2.8e-41 Score=264.34 Aligned_cols=131 Identities=30% Similarity=0.525 Sum_probs=120.9
Q ss_pred cceeeEEeccccCCceEEEEcCeEeccccccCCccccCcccEEEEEeecCCCCcccEEEEEEEeccCCcEEEEeecCCCc
Q 030552 16 ASKTFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN 95 (175)
Q Consensus 16 ~s~t~~i~as~lrkG~~i~i~g~pck~~~~~~~~~~~~~~~Vve~~~~KpGKhG~Akv~~k~~ni~TGk~~e~~~~s~~~ 95 (175)
.|.|||+++++||+|++|+++|+||+ |++++|+||||||+|++|++++||+||+++|++|+++++
T Consensus 5 m~~t~~i~~~~lr~G~~I~~~g~p~~---------------V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ 69 (136)
T 2eif_A 5 MPGTKQVNVGSLKVGQYVMIDGVPCE---------------IVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSK 69 (136)
T ss_dssp CSSEEEEEGGGCCTTSEEEETTEEEE---------------EEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSE
T ss_pred EEeeEEEEHHHCcCCCEEEECCEEEE---------------EEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCCCE
Confidence 46799999999999999999999999 999999999999999999999999999999999999999
Q ss_pred eecceEEeeeeEEEEecCCccEEEecCCCCceecccCCcchhhHHHHHhhccCCCeEEEEEEeeCCeeeEEEEeec
Q 030552 96 CDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDI 171 (175)
Q Consensus 96 ~e~p~v~r~~~q~ly~d~d~~~~fMd~~t~~~eqi~lp~~~~l~~~~~~~l~eg~~v~V~~~~~mGeE~v~~~k~~ 171 (175)
++.|.++|++|||||+|++ +|+|||++|| ||+.||.+ +++.. |+||+. |+++.+||+++|+++|++
T Consensus 70 ve~~~ve~~~~qyly~dg~-~~~fMD~ety--eq~~l~~~----gd~~~-l~e~~~--v~v~~~~G~~~i~~~k~~ 135 (136)
T 2eif_A 70 VEVPIIDRRKGQVLAIMGD-MVQIMDLQTY--ETLELPIP----EGIEG-LEPGGE--VEYIEAVGQYKITRVIGG 135 (136)
T ss_dssp EEEECEEEEEEEEEEEETT-EEEEEETTTC--CEEEEECC----SCCTT-CSTTCE--EEEEEETTEEEEEEEC--
T ss_pred eccccEeeeEEEEEEecCC-EEEEEeCCCc--eEEEecCC----Cchhh-CCCCCE--EEEEEECCEEEEEEEEec
Confidence 9999999999999999988 7999999999 88888876 35677 899987 566778999999999974
No 8
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=7.2e-40 Score=266.77 Aligned_cols=140 Identities=29% Similarity=0.536 Sum_probs=129.9
Q ss_pred ccCCCcceeeEEeccccCCceEEEEcCeEeccccccCCccccCcccEEEEEee-cCCCCcccEEEEEEEeccCCcEEEEe
Q 030552 11 KADAGASKTFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVSTS-KTGKHGHAKCHFVGIDIFNGKKLEDI 89 (175)
Q Consensus 11 ~~~~~~s~t~~i~as~lrkG~~i~i~g~pck~~~~~~~~~~~~~~~Vve~~~~-KpGKhG~Akv~~k~~ni~TGk~~e~~ 89 (175)
+++|++|.|||++|++||+|+||+|+|+||+ |++++++ ||||| |++++|||||+++|++
T Consensus 24 ~~~~gas~T~p~q~~~LrkG~yv~IkGrPCK---------------IveiStS~KtGKH-----~ivaiDIFTgkK~edi 83 (176)
T 1khi_A 24 TGTGSASQTVTIPCHHIRLGDILILQGRPCQ---------------VIRISTSAATGQH-----RYLGVDLFTKQLHEES 83 (176)
T ss_dssp ---CCSCCEEEEEGGGCCTTCEEEETTEEEE---------------EEEEEECTTTCCE-----EEEEEETTTCCEEEEE
T ss_pred CCCCCCCccEEEEhhheeeCCEEEECCeeeE---------------EEEEEccCCCCce-----EEEEEEccCCcEeEEe
Confidence 6899999999999999999999999999999 9999999 89999 8999999999999999
Q ss_pred ecCC--------CceecceEEeeeeEEEEecCCccEEEecCCCCceecccCCcchhhHHHHHhhccCCCe-EEEEEEeeC
Q 030552 90 VPSS--------HNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKD-LVVTVMSSM 160 (175)
Q Consensus 90 ~~s~--------~~~e~p~v~r~~~q~ly~d~d~~~~fMd~~t~~~eqi~lp~~~~l~~~~~~~l~eg~~-v~V~~~~~m 160 (175)
+|++ |+|++|+|+ +||+|+++ ||+++|||++|+++++++||...+|..+++..|++|++ +.|++|++|
T Consensus 84 ~Pss~p~p~~~~hnm~VPvVk--~yQlldI~-dg~lsLMd~~G~~k~dl~lp~~~~l~~~i~~~f~~G~~~~~V~v~~am 160 (176)
T 1khi_A 84 SFVSNPAPSVVVQTMLGPVFK--QYRVLDMQ-DGSIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDH 160 (176)
T ss_dssp CCEECSSTTCCEEEEEEECCE--EEEEEEEE-TTEEEEECTTCCEEEEEEBCCSTTHHHHHHHHHTTTGGGEEEEEEEET
T ss_pred ccccCCCcccccceeccceeE--EEEEEEEc-CCeEEEEeCCCCEEeeeEccchHHHHHHHHHHhhCCCceEEEEEEeEC
Confidence 9999 899999996 99999996 56999999999999999999855689999999999998 559999999
Q ss_pred CeeeEEEEeecCC
Q 030552 161 GEEQICALKDIGP 173 (175)
Q Consensus 161 GeE~v~~~k~~~~ 173 (175)
|+|+|+++|++++
T Consensus 161 G~e~iv~~K~~~~ 173 (176)
T 1khi_A 161 GREMAVDMKVVHG 173 (176)
T ss_dssp TEEEEEEEEECCC
T ss_pred CcEEEEEEEeccc
Confidence 9999999999765
No 9
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Probab=100.00 E-value=2.9e-38 Score=259.94 Aligned_cols=128 Identities=15% Similarity=0.216 Sum_probs=119.1
Q ss_pred ceeeEEeccccCCceEEEEcCeEeccccccCCccccCcccEEEEEeecCCCCcccEEEEEEEeccCCcEEEEeecCCCce
Q 030552 17 SKTFPQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNC 96 (175)
Q Consensus 17 s~t~~i~as~lrkG~~i~i~g~pck~~~~~~~~~~~~~~~Vve~~~~KpGKhG~Akv~~k~~ni~TGk~~e~~~~s~~~~ 96 (175)
|.-+||+|++||+|++|++||+||+ |++++|+|||| |+|++|+++|||+||+++|++|++++++
T Consensus 2 ~~m~~~~a~dlk~G~~I~~dg~p~~---------------Vve~~~~KpGK-G~A~vr~klknl~TG~~~e~tf~s~~kv 65 (191)
T 3a5z_B 2 SHMATYYSNDFRAGLKIMLDGEPYA---------------VEASEFVKPGK-GQAFARVKLRRLLTGTRVEKTFKSTDSA 65 (191)
T ss_dssp ----CEESTTCCTTCEEEETTEEEE---------------EEEEEEECCTT-CCCEEEEEEEEGGGTEEEEEEEETTCEE
T ss_pred CccceeeHHHCCCCCEEEECCEEEE---------------EEEEEEEcCCC-CcEEEEEEEEECCCCCEEEEEECCCCEE
Confidence 4558999999999999999999999 99999999999 9999999999999999999999999999
Q ss_pred ecceEEeeeeEEEEecCCccEEEecCCCCceecccCCcchhhHHHHHhhccCCCeEEEEEEeeCCeeeEEEEe
Q 030552 97 DAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 169 (175)
Q Consensus 97 e~p~v~r~~~q~ly~d~d~~~~fMd~~t~~~eqi~lp~~~~l~~~~~~~l~eg~~v~V~~~~~mGeE~v~~~k 169 (175)
+.|+|+|++|||||.|+| .|+|||+++| ||+.||.+. +++...||+||+.|.|++| ++++++++
T Consensus 66 e~~~ver~~~qylY~dgd-~~~FMD~ety--eQ~~l~~~~--lgd~~~~l~e~~~v~v~~~----~g~~i~v~ 129 (191)
T 3a5z_B 66 EGADVVDMNLTYLYNDGE-FWHFMNNETF--EQLSADAKA--IGDNAKWLLDQAECIVTLW----NGQPISVT 129 (191)
T ss_dssp EECCEEEECCEEEEECSS-CEEEECTTTC--CEEEECHHH--HCTTTTTCCSSEECEEEEE----TTEEEEEE
T ss_pred EeeEEEEEEEEEEEeCCC-EEEEeeCCCC--eEEEccHHH--hhhHHhhcCCCCEEEEEEE----CCEEEEEE
Confidence 999999999999999998 6899999999 999999875 8899999999999999888 67888886
No 10
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=100.00 E-value=2.1e-37 Score=253.31 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=114.3
Q ss_pred EeccccCCceEEEEcCeEeccccccCCccccCcccEEEEEeecCCCCcccEEEEEEEeccCCcEEEEeecCCCceecceE
Q 030552 22 QQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHV 101 (175)
Q Consensus 22 i~as~lrkG~~i~i~g~pck~~~~~~~~~~~~~~~Vve~~~~KpGKhG~Akv~~k~~ni~TGk~~e~~~~s~~~~e~p~v 101 (175)
++|++||+|++|++||+||+ |++++|+|||| |+|+||+++|||+||+++|++|||+++++.|+|
T Consensus 2 i~a~dlkkG~~i~~dg~p~~---------------Vve~~~~KpGK-G~A~vr~klknl~TG~~~e~tf~s~~kve~~~v 65 (184)
T 1ueb_A 2 ISVTDLRPGTKVKMDGGLWE---------------CVEYQHQKLGR-GGAKVVAKFKNLETGATVERTFNSGEKLEDIYV 65 (184)
T ss_dssp EEGGGCCTTCEEEETTEEEE---------------EEEEEEEEETT-SCCEEEEEEEESSSSCEEEEEEETTCEEEECCE
T ss_pred cchhhcCCCCEEEECCEEEE---------------EEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEECCCCEEEeeeE
Confidence 68999999999999999999 99999999999 999999999999999999999999999999999
Q ss_pred EeeeeEEEEecCCccEEEecCCCCceecccCCcchhhHHHHHhhccCCCeEEEEEEeeCCeeeEEEEe
Q 030552 102 TRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 169 (175)
Q Consensus 102 ~r~~~q~ly~d~d~~~~fMd~~t~~~eqi~lp~~~~l~~~~~~~l~eg~~v~V~~~~~mGeE~v~~~k 169 (175)
+|++|||||+|+| .|+|||+++| ||+.||.+. +++. .||+||++|.|++| ++++++++
T Consensus 66 er~~~qylY~dgd-~~~FMD~ety--eq~~l~~~~--lgd~-~~L~eg~~v~v~~~----~g~~i~v~ 123 (184)
T 1ueb_A 66 ETRELQYLYPEGE-EMVFMDLETY--EQFAVPRSR--VVGA-EFFKEGMTALGDMY----EGQPIKVT 123 (184)
T ss_dssp EEEEEEEEEEETT-EEEEEETTTC--CEEEEEGGG--BTTG-GGCCTTCEEEEEEE----TTEEEEEE
T ss_pred EEEEEEEEEeCCC-EEEEeeCCCc--eeEEcCHHH--cChh-hhcCCCCEEEEEEE----CCEEEEEE
Confidence 9999999999999 6799999999 999999886 7788 99999999777666 44777765
No 11
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=100.00 E-value=1.7e-36 Score=249.30 Aligned_cols=124 Identities=17% Similarity=0.253 Sum_probs=119.1
Q ss_pred EEeccccCCceEEEEcCeEeccccccCCccccCcccEEEEEeecCCCCcccEEEEEEEeccCCcEEEEeecCCCceecce
Q 030552 21 PQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPH 100 (175)
Q Consensus 21 ~i~as~lrkG~~i~i~g~pck~~~~~~~~~~~~~~~Vve~~~~KpGKhG~Akv~~k~~ni~TGk~~e~~~~s~~~~e~p~ 100 (175)
.+++++||+|++|+++|+||+ |++++|+|||| |+|++|++++||+||+++|.+|+|+++++.|+
T Consensus 6 m~~a~dlkkG~~I~~dG~p~~---------------Vve~~~~KpGK-G~A~vr~klknl~tG~~~e~tf~s~ekve~~~ 69 (191)
T 3tre_A 6 THSTNEFRGGLKVMVDGDPCS---------------IIDNEFVKPGK-GQAFNRVKFRNLKTGRVLERTFKSGETLPAAD 69 (191)
T ss_dssp CEEGGGCCTTCEEEETTEEEE---------------EEEEEEECCSS-SCCEEEEEEEETTTCCEEEEEEETTCEECBCC
T ss_pred EEEHHHCCCCCEEEECCEEEE---------------EEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEeCCCCEEEece
Confidence 489999999999999999999 99999999999 99999999999999999999999999999999
Q ss_pred EEeeeeEEEEecCCccEEEecCCCCceecccCCcchhhHHHHHhhccCCCeEEEEEEeeCCeeeEEEEe
Q 030552 101 VTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 169 (175)
Q Consensus 101 v~r~~~q~ly~d~d~~~~fMd~~t~~~eqi~lp~~~~l~~~~~~~l~eg~~v~V~~~~~mGeE~v~~~k 169 (175)
++|++|||||.|+| .|+|||+++| ||+.||.+. +++...||+||+.|.|++| ++.+++++
T Consensus 70 ver~~~qylY~dgd-~~~FMD~ety--Eq~~l~~~~--lgd~~~~L~eg~~v~v~~~----~~~~i~v~ 129 (191)
T 3tre_A 70 VVEVEMQYLYNDGE-FWHFMTSENY--EQHAASKEA--VAEAKQWLKEEALCMVTMW----NGVPLSVE 129 (191)
T ss_dssp EEEEEEEEEEECSS-CEEEEESSSC--CEEEECHHH--HGGGGGGCCTTCEEEEEEE----TTEEEEEE
T ss_pred EEEEEEEEEEEcCC-cEEEccCCch--HheecchhH--hhhHHhhCCCCCEEEEEEE----CCEEEEEE
Confidence 99999999999998 7899999999 999999875 8899999999999999999 78888887
No 12
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=100.00 E-value=2.2e-36 Score=252.81 Aligned_cols=124 Identities=18% Similarity=0.235 Sum_probs=115.5
Q ss_pred EEeccccCCceEEEEcCeEeccccccCCccccCcccEEEEEeecCCCCcccEEEEEEEeccCCcEEEEeecCCCceecce
Q 030552 21 PQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPH 100 (175)
Q Consensus 21 ~i~as~lrkG~~i~i~g~pck~~~~~~~~~~~~~~~Vve~~~~KpGKhG~Akv~~k~~ni~TGk~~e~~~~s~~~~e~p~ 100 (175)
.++|++||+|++|++||+||+ |++++|+|||| |+|+||+++|||+||+++|++|+++++++.|+
T Consensus 31 Mi~a~dlKkG~~I~idG~p~~---------------Vve~~hvKPGK-G~A~vr~klknl~TG~~~e~tf~s~ekve~a~ 94 (215)
T 1yby_A 31 MISAGDFKNGVTFELDGQIFQ---------------VIEFQHVKPGK-GAAFVRTKLKNIVTGATIEKTFNPTDKMPKAH 94 (215)
T ss_dssp CEEGGGCCTTCEEEETTEEEE---------------EEEEEEECCC---CCEEEEEEEETTTCCEEEEEECTTCEECBCC
T ss_pred EEEhhhccCCCEEEECCEEEE---------------EEEEEEEcCCC-CceEEEEEEEECCCCCEEEEEECCCCEEecce
Confidence 479999999999999999999 99999999999 99999999999999999999999999999999
Q ss_pred EEeeeeEEEEecCCccEEEecCCCCceecccCCcchhhHHHHHhhccCCCeEEEEEEeeCCeeeEEEEe
Q 030552 101 VTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 169 (175)
Q Consensus 101 v~r~~~q~ly~d~d~~~~fMd~~t~~~eqi~lp~~~~l~~~~~~~l~eg~~v~V~~~~~mGeE~v~~~k 169 (175)
|+|++|||||.|+| .|+|||+++| ||+.||.+. +++...||+||+.|.|++| ++++++++
T Consensus 95 verr~~QylY~Dgd-~y~FMD~ETy--EQi~l~~~~--lgd~~~fLkEg~~v~v~~~----~g~~i~ve 154 (215)
T 1yby_A 95 IERKDMQYLYNDGD-LYYFMDTETF--EQLPLGKDK--IGDALKFVKENEIVKVLSH----KGNVFGIE 154 (215)
T ss_dssp CEEEEEEEEEEETT-EEEEECTTTC--CEEEEEHHH--HTTTTTTCCTTCEEEEEEE----TTEEEEEE
T ss_pred EEEEEEEEEEeCCC-EEEEccCCCC--eeEEecHHH--hhhHHhhCCCCCEEEEEEE----CCEEEEEE
Confidence 99999999999998 6899999999 999999875 8888999999999888888 66788876
No 13
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.6e-35 Score=243.56 Aligned_cols=123 Identities=11% Similarity=0.209 Sum_probs=117.1
Q ss_pred EEeccccCCceEEEEcCeEeccccccCCccccCcccEEEEEeecCCCCcccEEEEEEEeccCCcEEEEeecCCCceecce
Q 030552 21 PQQAGTIRKNGYIVIKNRPCKPQVFKFPSFSLHSKQVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPH 100 (175)
Q Consensus 21 ~i~as~lrkG~~i~i~g~pck~~~~~~~~~~~~~~~Vve~~~~KpGKhG~Akv~~k~~ni~TGk~~e~~~~s~~~~e~p~ 100 (175)
.+++++||+|++|+++|+||+ |++++|+|||| |+|++|+++|||+||+++|.+|+|+++++.|+
T Consensus 4 m~~a~dlk~G~~I~~dg~p~~---------------Vve~~~~KpGK-G~A~vr~klknl~tG~~~e~tf~s~ekve~~~ 67 (191)
T 3oyy_A 4 MKTAQEFRAGQVANINGAPWV---------------IQKAEFNKSGR-NAAVVKMKLKNLLTGAGTETVFKADDKLEPII 67 (191)
T ss_dssp CEEGGGCCTTCEEEETTEEEE---------------EEEEEEECCTT-SCCEEEEEEEETTTCCEEEEEEETTCEEEECC
T ss_pred cccHHhCCCCCEEEECCEEEE---------------EEEEEeeeCCC-CcEEEEEEEEECCCCCEEEEEeCCCCEEEeee
Confidence 478999999999999999999 99999999999 66999999999999999999999999999999
Q ss_pred EEeeeeEEEEecCCccEEEecCCCCceecccCCcchhhHHHHHhhccCCCe--EEEEEEeeCCeeeEEEEe
Q 030552 101 VTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKD--LVVTVMSSMGEEQICALK 169 (175)
Q Consensus 101 v~r~~~q~ly~d~d~~~~fMd~~t~~~eqi~lp~~~~l~~~~~~~l~eg~~--v~V~~~~~mGeE~v~~~k 169 (175)
++|++|||||.|+| .|+||| ++| ||+.||.+. +++...||+||+. |.|++| ++.+++++
T Consensus 68 ver~~~qylY~dgd-~~~FMD-ety--Eq~~l~~~~--lgd~~~~L~eg~~~~v~v~~~----~~~~i~v~ 128 (191)
T 3oyy_A 68 LDRKEVTYSYFADP-LYVFMD-SEF--NQYEIEKDD--LEGVLTFIEDGMTDICEAVFY----NDKVISVE 128 (191)
T ss_dssp CEEEEEEEEEECSS-SEEEEE-TTC--CEEEECGGG--CTTTGGGCCTTCCCCEEEEEE----TTEEEEEE
T ss_pred EEEEEEEEEEecCC-EEEEEe-cCh--hheeCChHH--hhhHHhhCcCCCEeEEEEEEE----CCEEEEEE
Confidence 99999999999998 789999 999 999999875 8899999999999 999999 77888876
No 14
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=43.69 E-value=27 Score=23.57 Aligned_cols=32 Identities=19% Similarity=0.102 Sum_probs=23.3
Q ss_pred CCCcccEEEEEEEeccCCcEEEEeecCCCceec
Q 030552 66 GKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDA 98 (175)
Q Consensus 66 GKhG~Akv~~k~~ni~TGk~~e~~~~s~~~~e~ 98 (175)
|-|+...+++.+| +-+|+.+..+|++++.+..
T Consensus 1 ~~~~~~~~~i~iR-lpdG~r~~~~F~~~~tl~~ 32 (84)
T 3qx1_A 1 GSHMEPVSKLRIR-TPSGEFLERRFLASNKLQI 32 (84)
T ss_dssp ---CCCEEEEEEE-CTTSCEEEEEEETTSBHHH
T ss_pred CCCCCCeEEEEEE-CCCCCEEEEEeCCCCCHHH
Confidence 3455566666666 6789999999999999864
No 15
>3f3b_A Phage-like element PBSX protein XKDH; NESG X-RAY SR362 P54328 structure, structural genomics, PSI- 2, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=28.42 E-value=26 Score=26.76 Aligned_cols=31 Identities=29% Similarity=0.265 Sum_probs=24.5
Q ss_pred eeeEEeccccCCceEEEEcCeEeccccccCCc
Q 030552 18 KTFPQQAGTIRKNGYIVIKNRPCKPQVFKFPS 49 (175)
Q Consensus 18 ~t~~i~as~lrkG~~i~i~g~pck~~~~~~~~ 49 (175)
..||..+ +||.++.|+.+|-.|+++.-+..+
T Consensus 74 vhFp~~a-DVR~nDKviw~g~~y~Lq~Pk~ir 104 (126)
T 3f3b_A 74 VHFPLSA-DIRVNDKIIWENHKYILKLPKRIR 104 (126)
T ss_dssp EEEETTS-CCCTTCEEEETTEEEEECSCCEEE
T ss_pred hhcCccc-ceeeccEEEecCeEEEecCCcccc
Confidence 4566655 999999999999999876666555
No 16
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomic protein structure initiative; 1.57A {Enterococcus faecalis} SCOP: b.161.1.1
Probab=24.75 E-value=58 Score=24.58 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=16.3
Q ss_pred cccCCceEEEEcCeEec
Q 030552 25 GTIRKNGYIVIKNRPCK 41 (175)
Q Consensus 25 s~lrkG~~i~i~g~pck 41 (175)
.+|++|+.+.|+++-|+
T Consensus 53 ~~i~~Gd~l~i~~~~Y~ 69 (129)
T 2f9h_A 53 VTLAEGDHLKIGDTNYT 69 (129)
T ss_dssp CCCCTTCEEEETTEEEE
T ss_pred CCcCCCCEEEECCEEEE
Confidence 68999999999999999
No 17
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=24.63 E-value=62 Score=25.47 Aligned_cols=41 Identities=10% Similarity=-0.014 Sum_probs=29.8
Q ss_pred EeccccCCceEEEEcCeE---eccccccCCccccCcccEEEEEee--------cCCCCcccEEEEEE
Q 030552 22 QQAGTIRKNGYIVIKNRP---CKPQVFKFPSFSLHSKQVVEVSTS--------KTGKHGHAKCHFVG 77 (175)
Q Consensus 22 i~as~lrkG~~i~i~g~p---ck~~~~~~~~~~~~~~~Vve~~~~--------KpGKhG~Akv~~k~ 77 (175)
+..=+||+|+.|.+++.| +. |+.+.+. -+--|||+.|.++-
T Consensus 59 vk~LeLRiGD~VKVd~vpK~~hi---------------VvGf~~~l~~~~~~~~TDi~Gh~tViL~~ 110 (153)
T 2fhd_A 59 IKRFFLKKGDVVQSTRLGKIKHT---------------VVKTFRSTNEQLSLIAVDALNNDMVILAH 110 (153)
T ss_dssp EEESCCCTTCEEEETTSTTCCEE---------------EEEEECCCSSCCCGGGCCTTCCCEEEEEE
T ss_pred ceeeeeecCCEEEECCCCCccEE---------------EEEecccccccccceeeeecCceEEEEcc
Confidence 556799999999999765 55 7777632 33456888887554
No 18
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=23.90 E-value=1.4e+02 Score=22.18 Aligned_cols=68 Identities=21% Similarity=0.293 Sum_probs=39.9
Q ss_pred eccccCCceEEEEc-----CeEeccccccCCccccCcccEEEEEeecCCCCcccEEEEEEEeccCCcEEEEeecCC-Cce
Q 030552 23 QAGTIRKNGYIVIK-----NRPCKPQVFKFPSFSLHSKQVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS-HNC 96 (175)
Q Consensus 23 ~as~lrkG~~i~i~-----g~pck~~~~~~~~~~~~~~~Vve~~~~KpGKhG~Akv~~k~~ni~TGk~~e~~~~s~-~~~ 96 (175)
..-+++.|+.|.+. |.....|.|.- -|+ ... |+ | .--.+.++++..|--+|.+||-. -.+
T Consensus 15 ~iP~f~~GDtv~V~~~i~EG~keRiQ~F~G--------vvI--~~~--~~-G-~~~tftvRki~~gvGVEr~fpl~SP~I 80 (114)
T 3r8s_P 15 DVPSFRPGDTVEVKVWVVEGSKKRLQAFEG--------VVI--AIR--NR-G-LHSAFTVRKISNGEGVERVFQTHSPVV 80 (114)
T ss_dssp CCCCCCTTCEEEEEEEEEETTEEEEEEEEE--------EEE--EEE--CC-G-GGCEEEEEEEETTEEEEEEEETTCTTE
T ss_pred CCCccCCCCEEEEEEEEecCCceeeeeEEE--------EEE--EEE--CC-C-CCeEEEEEEecCCccEEEEEecCCCcc
Confidence 34588999988753 54444111100 022 222 33 2 22358899999999999999974 345
Q ss_pred ecceEEee
Q 030552 97 DAPHVTRT 104 (175)
Q Consensus 97 e~p~v~r~ 104 (175)
+...|.++
T Consensus 81 ~~IeV~r~ 88 (114)
T 3r8s_P 81 DSISVKRR 88 (114)
T ss_dssp EEEEEEEC
T ss_pred ceEEEEEc
Confidence 55555443
No 19
>2a2p_A Selenoprotein M, SELM protein; redox enzyme, oxidoreductase; NMR {Mus musculus} SCOP: c.47.1.23
Probab=22.86 E-value=64 Score=24.59 Aligned_cols=41 Identities=12% Similarity=0.069 Sum_probs=26.9
Q ss_pred eeEEEEecCCccEEEecCCCCceecccCCcchhhHHHHHhhccC
Q 030552 105 DYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAE 148 (175)
Q Consensus 105 ~~q~ly~d~d~~~~fMd~~t~~~eqi~lp~~~~l~~~~~~~l~e 148 (175)
.++|+.-..- .++|+|.+|..+|.+.|..=. ...+.+||.+
T Consensus 48 ~Vkyi~Ga~P-~LvL~D~~G~e~E~I~Iekw~--~d~I~efL~e 88 (129)
T 2a2p_A 48 VMKHLPGADP-ELVLLSRNYQELERIPLSQMT--RDEINALVQE 88 (129)
T ss_dssp EEEEESSCCC-EEEEECSSSCCCEEEECSSSC--HHHHHHHHHH
T ss_pred eEEEeCCCCC-EEEEecCCCCEEEEeecccCC--HHHHHHHHHH
Confidence 3444443333 689999999988999987643 4456655543
No 20
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=21.55 E-value=1.5e+02 Score=21.16 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=28.9
Q ss_pred eeEEEEecCCccEEEecCCCCceecccCCcchhhHHHHHhhccCCCeEEEEEE
Q 030552 105 DYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVM 157 (175)
Q Consensus 105 ~~q~ly~d~d~~~~fMd~~t~~~eqi~lp~~~~l~~~~~~~l~eg~~v~V~~~ 157 (175)
.+|+=|.|+|| |.+.|..+.++-+.++-+.+.|..+.+.++
T Consensus 45 ~~~ikY~DEen------------D~v~i~Sq~E~eEAlkva~k~~n~L~m~v~ 85 (87)
T 2bkf_A 45 TIQIKYLDEEN------------EEVSINSQGEYEEALKMAVKQGNQLQMQVH 85 (87)
T ss_dssp SEEEEEECTTS------------CEEEECSHHHHHHHHHHHHHTTTEEEEEEE
T ss_pred ceEEEEEcCCC------------CEEEEecHHHHHHHHHHhccCCCEEEEEEe
Confidence 44677777664 567777666666667777888888888776
No 21
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=21.55 E-value=1.9e+02 Score=20.82 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=22.2
Q ss_pred EEEEEEeccCCcEEEEeecCC-CceecceEE
Q 030552 73 CHFVGIDIFNGKKLEDIVPSS-HNCDAPHVT 102 (175)
Q Consensus 73 v~~k~~ni~TGk~~e~~~~s~-~~~e~p~v~ 102 (175)
-.+.++++..|--+|.+||-. -.++...|.
T Consensus 40 ~tftvRki~~gvGVEr~fpl~SP~I~~IeV~ 70 (98)
T 2ftc_K 40 ATFILRNVIEGQGVEICFELYNPRVQEIQVV 70 (98)
T ss_pred cEEEEEEeccCceEEEEEecCCCceeEEEEE
Confidence 469999999999999999864 224444443
Done!