BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030553
(175 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
Query: 59 GGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNAD 118
GGG M ++ Q + D R F+ + +GI L S ++ DA +
Sbjct: 307 GGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLRRLIGDE 366
Query: 119 DLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRI 158
LR A +EV EE + T E+++R +RI
Sbjct: 367 SLRTAAREV----------REEMVALPTPAETVRRIVERI 396
>pdb|3BY4|A Chain A, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
Length = 212
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 27/99 (27%)
Query: 72 SVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDS 131
SV V D CLF A+ G+ + RD RE M KEV+
Sbjct: 21 SVHPVLDDNSCLFHAIAYGIFKQDSV----RDLRE---------------MVSKEVL--- 58
Query: 132 GSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESEL 170
+ ++ +A++ D+ K Y Q I + + WGG E+
Sbjct: 59 -NNPVKFNDAIL----DKPNKDYAQWILKMESWGGAIEI 92
>pdb|3CFD|H Chain H, Purple-fluorescent Antibody Ep2-25c10 In Complex With Its
Stilbene Hapten
pdb|3CFD|B Chain B, Purple-fluorescent Antibody Ep2-25c10 In Complex With Its
Stilbene Hapten
pdb|3CFE|H Chain H, Crystal Structure Of Purple-Fluorescent Antibody Ep2-25c10
pdb|3CFE|B Chain B, Crystal Structure Of Purple-Fluorescent Antibody Ep2-25c10
Length = 220
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 133 SERRQYEEALIAITIDESLKRYCQR-----IGRSDFWGGESELLVST 174
+ + Q+ L ++T +++ YC R GR D+WG + + VS+
Sbjct: 74 TSKNQFFLQLNSVTTEDTATYYCARSDYGNYGRGDYWGQGTSVTVSS 120
>pdb|2NX2|A Chain A, Crystal Structure Of Protein Ypsa From Bacillus Subtilis,
Pfam Duf1273
Length = 181
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 105 REDAAFPLFFTNADDLRMAVKE 126
RE +P++F DDLR+ V+E
Sbjct: 157 REQDGYPIYFITMDDLRVTVEE 178
>pdb|3D0Q|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
pdb|3D0Q|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
Length = 398
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 10/100 (10%)
Query: 59 GGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNAD 118
GGG ++ Q + D R F+ + +GI L S ++ DA +
Sbjct: 307 GGGGTVXTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLRRLIGDE 366
Query: 119 DLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRI 158
LR A +EV EE + T E+++R +RI
Sbjct: 367 SLRTAAREV----------REEXVALPTPAETVRRIVERI 396
>pdb|3C0R|A Chain A, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
pdb|3C0R|C Chain C, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
Length = 212
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 27/99 (27%)
Query: 72 SVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDS 131
SV V D CLF A+ G+ + RD RE + KEV+
Sbjct: 21 SVHPVLDDNSCLFHAIAYGIFKQDSV----RDLREXVS---------------KEVL--- 58
Query: 132 GSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESEL 170
+ ++ +A++ D+ K Y Q I + + WGG E+
Sbjct: 59 -NNPVKFNDAIL----DKPNKDYAQWILKXESWGGAIEI 92
>pdb|1IGY|B Chain B, Structure Of Immunoglobulin
pdb|1IGY|D Chain D, Structure Of Immunoglobulin
Length = 434
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 142 LIAITIDESLKRYCQRIGRSDFWGGESELLVST 174
L ++T D+S YC R G +WG + + VS+
Sbjct: 82 LSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSS 114
>pdb|2Y36|H Chain H, Crystal Structure Analysis Of The Anti-(4-Hydroxy-3-
Nitrophenyl)- Acetyl Murine Germline Antibody Bbe6.12h3
Fab Fragment In Complex With A Phage Display Derived
Dodecapeptide Dlwttaiptips
Length = 220
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 142 LIAITIDESLKRYCQRI---GRS--DFWGGESELLVST 174
L ++T ++S YC R G S D+WGG++ L VS+
Sbjct: 83 LSSLTSEDSAVYYCARYDYYGGSYFDYWGGQTTLTVSS 120
>pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii
Length = 1015
Score = 26.6 bits (57), Expect = 8.0, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 42 FHRDSNNLFFARIGPPLGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGI 97
F D+N G PLGG S A ++E +R+ D R L +G+ NK +
Sbjct: 806 FIEDANTRLTLLTGQPLGGSSLASGELEIXQDRRLASDDE---RGLGQGVLDNKPV 858
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,008,653
Number of Sequences: 62578
Number of extensions: 194584
Number of successful extensions: 411
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 15
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)