BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030553
(175 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LBZ4|OTU_ARATH OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana
GN=At3g57810 PE=2 SV=1
Length = 317
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 21/154 (13%)
Query: 22 LVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKVERYSVQRVTGDGR 81
+VS V S S ++ +D+NN+ G + YS+ + GDGR
Sbjct: 122 IVSLLVCYSSTSQSAYADSSRDKDANNVHHHSSDGKFHNGK---RVYTDYSIIGIPGDGR 178
Query: 82 CLFRALVKGMALNKG-ITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEE 140
CLFR++ G L G + + +RE AD+LR V D +RRQ E
Sbjct: 179 CLFRSVAHGFCLRSGKLAPGEKMQRE---------LADELRTRV----ADEFIQRRQETE 225
Query: 141 ALIAITIDESLKRYCQRIGRSDFWGGESELLVST 174
+ D Y ++I WGGE EL +++
Sbjct: 226 WFVEGDFDT----YVRQIRDPHVWGGEPELFMAS 255
>sp|P22856|VL96_IRV1 Putative ubiquitin thioesterase L96 OS=Tipula iridescent virus
GN=L96 PE=3 SV=1
Length = 867
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 71 YSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICD 130
Y V V GDG CLFRA+ K + LN+ I + D R A + T+ + E + +
Sbjct: 606 YKVIPVKGDGNCLFRAVGKSLRLNQNIKYSHEDLR--AQVVTYLTSHKEFLEPYLEYVTE 663
Query: 131 SGSERRQYEEALIAITIDESLKRYCQRIGRSDFWG 165
SG Q E A ++++RY + I + WG
Sbjct: 664 SGDTTPQ-EYA-------KNVERYIKNISKPGTWG 690
>sp|Q73VR8|RLMN_MYCPA Probable dual-specificity RNA methyltransferase RlmN
OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 /
K-10) GN=rlmN PE=3 SV=1
Length = 364
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 102 RDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQR 157
RD D FP+ T A EV CD+G R+ AL +T++ L RY R
Sbjct: 67 RDAIADTMFPILLT-------AASEVTCDAGQTRKTLWRALDGVTVESVLMRYPHR 115
>sp|A0PQ89|RLMN_MYCUA Probable dual-specificity RNA methyltransferase RlmN
OS=Mycobacterium ulcerans (strain Agy99) GN=rlmN PE=3
SV=1
Length = 364
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 102 RDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQR 157
RD+ + FP T A +EV CD+G R+ A +T++ L RY QR
Sbjct: 67 RDQIAETMFPNLLT-------AAREVTCDAGQTRKTLWRATDGVTVESVLMRYPQR 115
>sp|Q196X6|VF232_IIV3 Putative ubiquitin thioesterase 232R OS=Invertebrate iridescent
virus 3 GN=IIV3-084L PE=3 SV=1
Length = 844
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 71 YSVQRVTGDGRCLFRALVKGMALNKGITLNSRDERE 106
Y+V++V+GDG CLFR++ K + +G R R+
Sbjct: 590 YTVKQVSGDGNCLFRSVCKSIRALRGEKFTHRQLRQ 625
>sp|Q7ZV00|OTU6B_DANRE OTU domain-containing protein 6B OS=Danio rerio GN=otud6b PE=2 SV=1
Length = 293
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 16/106 (15%)
Query: 66 KKVERY-SVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAV 124
K VER+ ++ ++ DG C++RA V+ +G+ L ++ R D ++ADD +
Sbjct: 141 KLVERHLQIKEISSDGHCMYRA-VEHQLTERGLALGLKELR-DQTAQYMRSHADDFMPFL 198
Query: 125 KEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESEL 170
++G + E ++YC + + WGG+ EL
Sbjct: 199 --TNPNTGD-----------MYTAEEFEKYCSDVADTAAWGGQLEL 231
>sp|B2HJP3|RLMN_MYCMM Probable dual-specificity RNA methyltransferase RlmN
OS=Mycobacterium marinum (strain ATCC BAA-535 / M)
GN=rlmN PE=3 SV=1
Length = 364
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 102 RDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQR 157
R++ + FP T A +EV CD+G R+ A +T++ L RY QR
Sbjct: 67 REQIAETMFPNLLT-------AAREVTCDAGQTRKTLWRATDGVTLESVLMRYPQR 115
>sp|Q00111|VG45_ICHVA Uncharacterized protein ORF45 OS=Ictalurid herpesvirus 1 (strain
Auburn) GN=ORF45 PE=4 SV=1
Length = 240
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 19/121 (15%)
Query: 1 MADNPTEGILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGG 60
+D PT +L V K ++ +PVA++S+P S P +S+ +
Sbjct: 112 FSDEPTS---PELAPAVPKIDIHEAPVATVSSPTS---PRPITTESSRV----------- 154
Query: 61 GSPAMKKVERYSVQRVT-GDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADD 119
SP +K R V + T + + + L +GM+L+ + +R +R + FTN+ D
Sbjct: 155 -SPTKEKWGRKRVHKKTHAEATWIPQILKRGMSLSSLLPAAARGQRSAVRRRVTFTNSKD 213
Query: 120 L 120
+
Sbjct: 214 V 214
>sp|A1T787|RLMN_MYCVP Probable dual-specificity RNA methyltransferase RlmN
OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)
GN=rlmN PE=3 SV=1
Length = 365
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 102 RDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQR 157
R+ DA FP F A +E+ CDSG R+ A+ T + L RY R
Sbjct: 69 RERVADALFPTLFG-------AAREIECDSGETRKVLWRAVDGTTFESVLMRYPDR 117
>sp|P20742|PZP_HUMAN Pregnancy zone protein OS=Homo sapiens GN=PZP PE=1 SV=4
Length = 1482
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Query: 14 RLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKVERYSV 73
R G A F + A ++ +SQTF T F D+NNL + ++ ++ V
Sbjct: 1269 RYGAATFTR-TEKTAQVTVQDSQTFSTNFQVDNNNLLLLQ--------QISLPELPGEYV 1319
Query: 74 QRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPL 112
VTG+ RC++ L + N E+ED+ F L
Sbjct: 1320 ITVTGE-RCVY--------LQTSMKYNILPEKEDSPFAL 1349
>sp|Q5ALR8|AMN1_CANAL Antagonist of mitotic exit network protein 1 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=AMN1 PE=3 SV=1
Length = 658
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 20 FELVSSPVASISNPNSQTFPTAFHRDSNNL 49
FEL P S+ P SQTF F SNNL
Sbjct: 370 FELYMCPKISLDKPQSQTFMKIFQSCSNNL 399
>sp|Q03MV9|PNP_STRTD Polyribonucleotide nucleotidyltransferase OS=Streptococcus
thermophilus (strain ATCC BAA-491 / LMD-9) GN=pnp PE=3
SV=1
Length = 741
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 6 TEGILEQL--RLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSP 63
T ILE+ + VA+FE++ ++I+ P S+ PTA DS + +I +G G
Sbjct: 518 TPAILEEALAQAKVARFEILDVIESAIAEPRSELAPTAPKIDSIQIPVDKIKVVIGKGGE 577
Query: 64 AMKKV 68
+ K+
Sbjct: 578 TIDKI 582
>sp|Q5M6F9|PNP_STRT2 Polyribonucleotide nucleotidyltransferase OS=Streptococcus
thermophilus (strain ATCC BAA-250 / LMG 18311) GN=pnp
PE=3 SV=1
Length = 741
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 6 TEGILEQL--RLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSP 63
T ILE+ + VA+FE++ ++I+ P S+ PTA DS + +I +G G
Sbjct: 518 TPAILEEALAQAKVARFEILDVIESAIAEPRSELAPTAPKIDSIQIPVDKIKVVIGKGGE 577
Query: 64 AMKKV 68
+ K+
Sbjct: 578 TIDKI 582
>sp|Q5M1W9|PNP_STRT1 Polyribonucleotide nucleotidyltransferase OS=Streptococcus
thermophilus (strain CNRZ 1066) GN=pnp PE=3 SV=1
Length = 741
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 6 TEGILEQL--RLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSP 63
T ILE+ + VA+FE++ ++I+ P S+ PTA DS + +I +G G
Sbjct: 518 TPAILEEALAQAKVARFEILDVIESAIAEPRSELAPTAPKIDSIQIPVDKIKVVIGKGGE 577
Query: 64 AMKKV 68
+ K+
Sbjct: 578 TIDKI 582
>sp|Q32Q05|OTU1_RAT Ubiquitin thioesterase OTU1 OS=Rattus norvegicus GN=Yod1 PE=2 SV=1
Length = 343
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 29/100 (29%)
Query: 76 VTGDGRCLFRAL---VKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSG 132
V D CLF ++ V+G LN A ++R + +++
Sbjct: 149 VPADNSCLFTSVYYVVEGGVLNPAC-------------------APEMRRLIAQIV---A 186
Query: 133 SERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLV 172
S+ Y EA++ T +E YC I R D WGG E+ +
Sbjct: 187 SDPDLYSEAILGKTNEE----YCDWIRRDDTWGGAIEISI 222
>sp|Q05B57|OTU1_BOVIN Ubiquitin thioesterase OTU1 OS=Bos taurus GN=YOD1 PE=2 SV=1
Length = 348
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 29/100 (29%)
Query: 76 VTGDGRCLFRAL---VKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSG 132
V D CLF ++ V+G LN A ++R + +++
Sbjct: 154 VPADNSCLFTSVYYVVEGGVLNPAC-------------------APEMRRFIAQIV---A 191
Query: 133 SERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLV 172
S+ Y EA++ T +E YC I R D WGG E+ +
Sbjct: 192 SDPDFYSEAILGKTNEE----YCDWIKRDDTWGGAIEISI 227
>sp|B0T658|HTPX_CAUSK Protease HtpX homolog OS=Caulobacter sp. (strain K31) GN=htpX PE=3
SV=1
Length = 309
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 12/112 (10%)
Query: 64 AMKKVERYSVQRV----TGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADD 119
A+ + Y R+ GDG L RAL K A +G +N ER A LF N
Sbjct: 200 AISRSREYEADRIGAQIAGDGLALARALEKIEAYARGGAVNVEAERNPATAHLFIINPLS 259
Query: 120 LRMAVKEVICDSGSERRQYEEALIAITIDESLK-RYCQRI-----GRSDFWG 165
R ++ + + R EAL+ + + ++ + R + G+S WG
Sbjct: 260 GRG--RDSLFSTHPATRNRVEALLRLGVSQATRGRSGTAVPTGATGKSGPWG 309
>sp|Q5VVQ6|OTU1_HUMAN Ubiquitin thioesterase OTU1 OS=Homo sapiens GN=YOD1 PE=1 SV=1
Length = 348
Score = 30.0 bits (66), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 29/100 (29%)
Query: 76 VTGDGRCLFRAL---VKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSG 132
V D CLF ++ V+G LN A ++R + +++
Sbjct: 154 VPADNSCLFTSVYYVVEGGVLNPAC-------------------APEMRRLIAQIV---A 191
Query: 133 SERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLV 172
S+ Y EA++ T E YC I R D WGG E+ +
Sbjct: 192 SDPDFYSEAILGKTNQE----YCDWIKRDDTWGGAIEISI 227
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,275,694
Number of Sequences: 539616
Number of extensions: 2577427
Number of successful extensions: 5182
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 5173
Number of HSP's gapped (non-prelim): 20
length of query: 175
length of database: 191,569,459
effective HSP length: 110
effective length of query: 65
effective length of database: 132,211,699
effective search space: 8593760435
effective search space used: 8593760435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)