Query 030553
Match_columns 175
No_of_seqs 140 out of 448
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 01:20:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030553.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030553hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3by4_A OTU1, ubiquitin thioest 99.9 3.3E-25 1.1E-29 183.7 6.6 80 69-175 18-97 (212)
2 3pfy_A OTU domain-containing p 99.9 2.1E-25 7.2E-30 182.3 3.6 80 69-175 57-136 (185)
3 3phx_A RNA-directed RNA polyme 99.9 5.6E-23 1.9E-27 167.5 5.8 88 65-175 25-112 (185)
4 3phu_A RNA-directed RNA polyme 99.9 2.1E-22 7.3E-27 168.4 5.4 87 66-175 26-112 (219)
5 1tff_A Ubiquitin thiolesterase 99.5 2.1E-15 7.1E-20 126.5 4.3 53 117-175 132-185 (234)
6 4dhi_B Ubiquitin thioesterase 99.3 2E-12 6.9E-17 111.9 4.6 52 117-174 170-222 (284)
7 4ddg_A Ubiquitin-conjugating e 99.3 2.8E-12 9.7E-17 114.2 5.6 52 117-174 300-352 (399)
8 2zfy_A Ubiquitin thioesterase 99.2 5.9E-12 2E-16 105.3 2.2 72 78-175 116-188 (234)
9 2zfy_A Ubiquitin thioesterase 96.2 0.01 3.5E-07 49.2 6.8 24 70-93 41-65 (234)
10 3dkb_A Tumor necrosis factor, 81.8 1.4 4.7E-05 39.6 4.4 41 71-130 112-152 (390)
11 3zrh_A Ubiquitin thioesterase 61.7 4.6 0.00016 36.9 2.8 42 70-130 188-229 (454)
12 1yqf_A Hypothetical protein LM 31.3 55 0.0019 26.0 4.4 49 111-160 149-197 (203)
13 3jv1_A P22 protein; MAM33 fami 28.8 68 0.0023 25.0 4.5 49 111-160 128-176 (182)
14 2jn4_A Hypothetical protein FI 22.3 14 0.00049 26.6 -0.6 21 150-170 41-61 (87)
15 3qv0_A Mitochondrial acidic pr 21.9 1E+02 0.0035 25.3 4.5 49 111-160 173-221 (227)
No 1
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.91 E-value=3.3e-25 Score=183.72 Aligned_cols=80 Identities=29% Similarity=0.524 Sum_probs=70.5
Q ss_pred cCcEEEEeCCCCchhhHHHHHHHHhccCCCCCCccccccccCCcccchHHHHHHHHHHHHhhccCCchhhHHHHHhhhhh
Q 030553 69 ERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITID 148 (175)
Q Consensus 69 ~gL~I~eIp~DG~CLFrAIadQL~~~~g~~~~~~~er~~~~~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~e 148 (175)
.+|.+++||+|||||||||++|| .. .. . +.+||+.|++||+. |++.|.||+ ++
T Consensus 18 ~~l~~~~i~~DGnCLFrAva~qL-~~--~~--------~---------~~~lR~~vv~yi~~---n~d~f~e~~----~~ 70 (212)
T 3by4_A 18 NVLSVHPVLDDNSCLFHAIAYGI-FK--QD--------S---------VRDLREMVSKEVLN---NPVKFNDAI----LD 70 (212)
T ss_dssp SEEEEECCCCSTTHHHHHHHHHH-HS--SC--------C---------SHHHHHHHHHHHHH---CTTTTCHHH----HT
T ss_pred CCeEEEEeCCCCchHHHHHHHHh-CC--ch--------H---------HHHHHHHHHHHHHH---CHHHHhhhh----cC
Confidence 36999999999999999999999 32 10 1 67999999999984 789998887 67
Q ss_pred hhHHHHHHhhcCCCcccchHhHhhccC
Q 030553 149 ESLKRYCQRIGRSDFWGGESELLVSTC 175 (175)
Q Consensus 149 e~fdeYC~~I~~t~~WGGeiEL~ALS~ 175 (175)
++|++||++|+++++|||+|||+|||.
T Consensus 71 ~~~e~Y~~~m~~~~~WGg~iEL~Als~ 97 (212)
T 3by4_A 71 KPNKDYAQWILKMESWGGAIEIGIISD 97 (212)
T ss_dssp SCHHHHHHHTTSTTSCCCHHHHHHHHH
T ss_pred CCHHHHHHHhcCCCEEccHHHHHHHHH
Confidence 899999999999999999999999983
No 2
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=99.91 E-value=2.1e-25 Score=182.32 Aligned_cols=80 Identities=16% Similarity=0.363 Sum_probs=54.9
Q ss_pred cCcEEEEeCCCCchhhHHHHHHHHhccCCCCCCccccccccCCcccchHHHHHHHHHHHHhhccCCchhhHHHHHhhhhh
Q 030553 69 ERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITID 148 (175)
Q Consensus 69 ~gL~I~eIp~DG~CLFrAIadQL~~~~g~~~~~~~er~~~~~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~e 148 (175)
.||.+++||+|||||||||++||.... . .+.+||+.|++||+ +|++.|.+|+ +
T Consensus 57 ~gL~~~~I~~DGnCLFrAia~qL~g~~----------~---------~h~~LR~~vv~yi~---~n~d~f~~Fv-----~ 109 (185)
T 3pfy_A 57 KGFIIKQMKEDGACLFRAVADQVYGDQ----------D---------MHEVVRKHCMDYLM---KNADYFSNYV-----T 109 (185)
T ss_dssp HCCEEECCCCSTTHHHHHHHHHHHSCG----------G---------GHHHHHHHHHHHHH---HTHHHHTTCC------
T ss_pred CCcEEEeeCCCCChHHHHHHHHHhCCc----------h---------HHHHHHHHHHHHHH---HHHHHHHHHH-----h
Confidence 699999999999999999999997421 1 27899999999998 4899999884 6
Q ss_pred hhHHHHHHhhcCCCcccchHhHhhccC
Q 030553 149 ESLKRYCQRIGRSDFWGGESELLVSTC 175 (175)
Q Consensus 149 e~fdeYC~~I~~t~~WGGeiEL~ALS~ 175 (175)
++|++||++|+++++|||+|||+|||.
T Consensus 110 ~~~e~Y~~~m~~~~~WGg~iEL~AlS~ 136 (185)
T 3pfy_A 110 EDFTTYINRKRKNNCHGNHIEMQAMAE 136 (185)
T ss_dssp ----------------CCHHHHHHHHH
T ss_pred ccHHHHHHHhhCCCccchHHHHHHHHH
Confidence 789999999999999999999999983
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.87 E-value=5.6e-23 Score=167.47 Aligned_cols=88 Identities=18% Similarity=0.300 Sum_probs=69.5
Q ss_pred hhhccCcEEEEeCCCCchhhHHHHHHHHhccCCCCCCccccccccCCcccchHHHHHHHHHHHHhhccCCchhhHHHHHh
Q 030553 65 MKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIA 144 (175)
Q Consensus 65 ~~k~~gL~I~eIp~DG~CLFrAIadQL~~~~g~~~~~~~er~~~~~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~ 144 (175)
+....++.|++||+|||||||||++||... . ...+++. .+.+||+.|++||+. |+++ ++
T Consensus 25 ~~~~~~~~v~rv~gDGnCLFrAva~qL~~~--~--~~~~~~~---------~~~~LR~~~~~yi~~---~~~~---~~-- 83 (185)
T 3phx_A 25 FNISDYFEIVRQPGDGNCFYHSIAELTMPN--K--TDHSYHY---------IKRLTESAARKYYQE---EPEA---RL-- 83 (185)
T ss_dssp CBHHHHEEEECCCSSTTHHHHHHHHHHSTT--C--CTTTHHH---------HHHHHHHHHHHHGGG---CTTH---HH--
T ss_pred cccccCeEEEccCCCCchHHHHHHHHHhCC--C--ccchhhh---------HHHHHHHHHHHHHHh---ChHh---hh--
Confidence 333456999999999999999999998642 0 1111122 278999999999984 5666 43
Q ss_pred hhhhhhHHHHHHhhcCCCcccchHhHhhccC
Q 030553 145 ITIDESLKRYCQRIGRSDFWGGESELLVSTC 175 (175)
Q Consensus 145 ~~~ee~fdeYC~~I~~t~~WGGeiEL~ALS~ 175 (175)
.+++|++||++|+++++|||++||+|||.
T Consensus 84 --~~~~~~~Y~~~m~~~~~WGg~iEL~Als~ 112 (185)
T 3phx_A 84 --VGLSLEDYLKRMLSDNEWGSTLEASMLAK 112 (185)
T ss_dssp --HCCCHHHHHHHHTSTTCCCBHHHHHHHHH
T ss_pred --cCCCHHHHHHHhhCCCccCcHHHHHHHHH
Confidence 58899999999999999999999999973
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.86 E-value=2.1e-22 Score=168.44 Aligned_cols=87 Identities=21% Similarity=0.325 Sum_probs=68.9
Q ss_pred hhccCcEEEEeCCCCchhhHHHHHHHHhccCCCCCCccccccccCCcccchHHHHHHHHHHHHhhccCCchhhHHHHHhh
Q 030553 66 KKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAI 145 (175)
Q Consensus 66 ~k~~gL~I~eIp~DG~CLFrAIadQL~~~~g~~~~~~~er~~~~~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~ 145 (175)
....+|.|++||+|||||||||++||.... . ..+.+. .+.+||+.|++||+. |+++ ++
T Consensus 26 ~~~~~~~V~rvpgDGnCLFrAVs~qL~~~~--~--~~~~~~---------~h~~LR~~va~yi~~---n~d~---~~--- 83 (219)
T 3phu_A 26 NISDYFEIVRQPGDGNCFYHSIAELTMPNK--T--DHSYHY---------IKRLTESAARKYYQE---EPEA---RL--- 83 (219)
T ss_dssp BHHHHEEEECCCCSSCHHHHHHHHHHCTTC--C--TTTHHH---------HHHHHHHHHHHHGGG---CHHH---HH---
T ss_pred ccccceEEEccCCCCchHHHHHHHHHhCCC--c--cchhhh---------HHHHHHHHHHHHHHh---Chhh---hh---
Confidence 333568999999999999999999995421 1 111122 278999999999984 6666 43
Q ss_pred hhhhhHHHHHHhhcCCCcccchHhHhhccC
Q 030553 146 TIDESLKRYCQRIGRSDFWGGESELLVSTC 175 (175)
Q Consensus 146 ~~ee~fdeYC~~I~~t~~WGGeiEL~ALS~ 175 (175)
.+++|++||++|+++++|||++||+|||.
T Consensus 84 -~~~~feeY~~~m~~~g~WGG~iEL~AlS~ 112 (219)
T 3phu_A 84 -VGLSLEDYLKRMLSDNEWGSTLEASMLAK 112 (219)
T ss_dssp -HCCCHHHHHHHHHSTTCCCCHHHHHHHHH
T ss_pred -cCCCHHHHHHHhcCCCccCCHHHHHHHHH
Confidence 58899999999999999999999999973
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.55 E-value=2.1e-15 Score=126.49 Aligned_cols=53 Identities=9% Similarity=0.132 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhhccCCchhhHHHHHhhhhhhhHHHHHH-hhcCCCcccchHhHhhccC
Q 030553 117 ADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQ-RIGRSDFWGGESELLVSTC 175 (175)
Q Consensus 117 a~eLR~~vad~I~~~~~~r~~f~efl~~~~~ee~fdeYC~-~I~~t~~WGGeiEL~ALS~ 175 (175)
+..||..++.||+ .|+++|.+|+. .+.+|++||+ .|+.+++|||++||+|||.
T Consensus 132 v~~lR~lta~~i~---~~~d~f~pFi~---~~~~~~~yC~~~ve~~~~~~~~iei~ALa~ 185 (234)
T 1tff_A 132 VQFLRLLTSAFIR---NRADFFRHFID---EEMDIKDFCTHEVEPMATECDHIQITALSQ 185 (234)
T ss_dssp HHHHHHHHHHHHH---HTHHHHGGGSC---TTSCHHHHHHHHTSSTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HCHHHHhhhhc---CCCCHHHHHHHHhhhhhcccccHHHHHHHH
Confidence 5679999999998 47999999962 1248999999 8999999999999999973
No 6
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.27 E-value=2e-12 Score=111.88 Aligned_cols=52 Identities=10% Similarity=0.070 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhhccCCchhhHHHHHhhhhhhhHHHHHH-hhcCCCcccchHhHhhcc
Q 030553 117 ADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQ-RIGRSDFWGGESELLVST 174 (175)
Q Consensus 117 a~eLR~~vad~I~~~~~~r~~f~efl~~~~~ee~fdeYC~-~I~~t~~WGGeiEL~ALS 174 (175)
+..||.+++.||+ .|+++|.+|+. .+.++++||+ +|+.++.|||++||+|||
T Consensus 170 v~~LRllts~yi~---~~~d~f~pFi~---~~~~v~~yC~~eVe~~~~e~d~leI~ALa 222 (284)
T 4dhi_B 170 LMFFRLITSAFLK---QNSEEYAPFID---EGMTVAQYCEQEIEPMWKDADHLAINSLI 222 (284)
T ss_dssp HHHHHHHHHHHHH---HTHHHHGGGSC---TTCCHHHHHHHHTSSTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HCHHHHHhhcC---CCCCHHHHHHHhceehhhcccHHHHHHHH
Confidence 5678999999998 58999999972 1358999999 899999999999999997
No 7
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.27 E-value=2.8e-12 Score=114.18 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhhccCCchhhHHHHHhhhhhhhHHHHHH-hhcCCCcccchHhHhhcc
Q 030553 117 ADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQ-RIGRSDFWGGESELLVST 174 (175)
Q Consensus 117 a~eLR~~vad~I~~~~~~r~~f~efl~~~~~ee~fdeYC~-~I~~t~~WGGeiEL~ALS 174 (175)
+..||.+++.||+ .|+++|.+|+. .+.++++||+ .|+.++.|||++||+||+
T Consensus 300 v~~lRllts~~i~---~~~d~f~pFi~---~~~~v~~yc~~~ve~~~~e~d~l~I~ALa 352 (399)
T 4ddg_A 300 VVYLRLLTSGYLQ---RESKFFEHFIE---GGRTVKEFCQQEVEPMCKESDHIHIIALA 352 (399)
T ss_dssp HHHHHHHHHHHHH---HTHHHHGGGSS---SSCCHHHHHHHHTSSTTCCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HCHHHHhcccC---CCCCHHHHHHHhceeHHhhCcHHHHHHHH
Confidence 5679999999998 48999999962 2347999999 999999999999999997
No 8
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.17 E-value=5.9e-12 Score=105.30 Aligned_cols=72 Identities=11% Similarity=0.087 Sum_probs=60.5
Q ss_pred CCCchhhHHHHHHHHhccCCCCCCccccccccCCcccchHHHHHHHHHHHHhhccCCchhhHHHHHhhhhhhhHHHHHH-
Q 030553 78 GDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQ- 156 (175)
Q Consensus 78 ~DG~CLFrAIadQL~~~~g~~~~~~~er~~~~~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~ee~fdeYC~- 156 (175)
.||+||++++.+|+... . .+..||..++.||+ .|+++|.+|+. .+.+|++||.
T Consensus 116 ~~~~~L~~~fndq~~s~-----------~---------~v~~lR~lta~yi~---~~~d~f~pFi~---~~~~~e~yc~~ 169 (234)
T 2zfy_A 116 TSVADLLASFNDQSTSD-----------Y---------LVVYLRLLTSGYLQ---RESKFFEHFIE---GGRTVKEFCQQ 169 (234)
T ss_dssp CCHHHHHHHHTSHHHHH-----------H---------HHHHHHHHHHHHHH---HTHHHHGGGCC---SSCCHHHHHHH
T ss_pred CCHHHHHHHHHhhccch-----------H---------HHHHHHHHHHHHHH---HCHHHHhcccC---CCCCHHHHHHH
Confidence 39999999999997422 1 17899999999998 48999999862 2348999997
Q ss_pred hhcCCCcccchHhHhhccC
Q 030553 157 RIGRSDFWGGESELLVSTC 175 (175)
Q Consensus 157 ~I~~t~~WGGeiEL~ALS~ 175 (175)
.|+.+++|||++||+|||.
T Consensus 170 ~ve~~~~~~~~i~i~ALa~ 188 (234)
T 2zfy_A 170 EVEPMCKESDHIHIIALAQ 188 (234)
T ss_dssp HTSSTTCCCCHHHHHHHHH
T ss_pred HhhhHhhcCCHHHHHHHHH
Confidence 5999999999999999973
No 9
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=96.20 E-value=0.01 Score=49.17 Aligned_cols=24 Identities=25% Similarity=0.582 Sum_probs=20.1
Q ss_pred Cc-EEEEeCCCCchhhHHHHHHHHh
Q 030553 70 RY-SVQRVTGDGRCLFRALVKGMAL 93 (175)
Q Consensus 70 gL-~I~eIp~DG~CLFrAIadQL~~ 93 (175)
.+ .+++|.|||||.|||++.+...
T Consensus 41 ~y~~~R~vRgDGNCFyRaf~f~ylE 65 (234)
T 2zfy_A 41 KYSYIRKTRPDGNCFYRAFGFSHLE 65 (234)
T ss_dssp TCCEEECBCCSSCHHHHHHHHHHHH
T ss_pred hccceeeccCCccHHHHHHHHHHHH
Confidence 44 5677999999999999998754
No 10
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=81.82 E-value=1.4 Score=39.57 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=30.7
Q ss_pred cEEEEeCCCCchhhHHHHHHHHhccCCCCCCccccccccCCcccchHHHHHHHHHHHHhh
Q 030553 71 YSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICD 130 (175)
Q Consensus 71 L~I~eIp~DG~CLFrAIadQL~~~~g~~~~~~~er~~~~~~~~~~~a~eLR~~vad~I~~ 130 (175)
|.-....||||||..|++-.|..... + .--||+...+.|..
T Consensus 112 L~pL~t~GDGnCLLHAvSqamWGv~D--------r-----------dlvLRkaL~~~L~~ 152 (390)
T 3dkb_A 112 LVALKTNGDGNCLMHATSQYMWGVQD--------T-----------DLVLRKALFSTLKE 152 (390)
T ss_dssp EEEBCCCCSSCHHHHHHHHHHHSSCS--------T-----------TCHHHHHHHHHHHH
T ss_pred eEEEEecCCCchHHHHHhHHhcCCCC--------H-----------hHHHHHHHHHHHHh
Confidence 55566789999999999998874311 1 33889999988875
No 11
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=61.68 E-value=4.6 Score=36.87 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=30.0
Q ss_pred CcEEEEeCCCCchhhHHHHHHHHhccCCCCCCccccccccCCcccchHHHHHHHHHHHHhh
Q 030553 70 RYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICD 130 (175)
Q Consensus 70 gL~I~eIp~DG~CLFrAIadQL~~~~g~~~~~~~er~~~~~~~~~~~a~eLR~~vad~I~~ 130 (175)
.|.-....||||||-.|++-.|.. .. .+ -.-||+...+.|.+
T Consensus 188 rL~pL~t~GDGNCLLHAvSqamWG---V~-----Dr-----------dlvLRkaL~~~L~~ 229 (454)
T 3zrh_A 188 RLYALWNRTAGDCLLDSVLQATWG---IY-----DK-----------DSVLRKALHDSLHD 229 (454)
T ss_dssp CEEEBCCCCSSCHHHHHHHHTTTS---SC-----CG-----------GGHHHHHHHHHHHH
T ss_pred ceeEeeecCCCccHHHHHHHHhhc---cc-----CC-----------cHHHHHHHHHHHHh
Confidence 455566789999999999987753 21 11 23788888888863
No 12
>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1
Probab=31.33 E-value=55 Score=25.99 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=36.7
Q ss_pred CcccchHHHHHHHHHHHHhhccCCchhhHHHHHhhhhhhhHHHHHHhhcC
Q 030553 111 PLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGR 160 (175)
Q Consensus 111 ~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~ee~fdeYC~~I~~ 160 (175)
|.|...=.+|+...-+||.. +.=..++..|+.......+-.+|+.|+++
T Consensus 149 P~F~~LDe~Lq~~l~~YLee-RGI~~~la~fl~~y~~~KE~~EYi~WL~~ 197 (203)
T 1yqf_A 149 PLVHELDYDLLNCVMTYLEK-RGVDEKLGEFVVLYSFWAEQQDYEAWLTT 197 (203)
T ss_dssp CCGGGSBHHHHHHHHHHHHH-TTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444567999999999975 34557788888766666778999999864
No 13
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0
Probab=28.79 E-value=68 Score=25.03 Aligned_cols=49 Identities=8% Similarity=0.060 Sum_probs=36.7
Q ss_pred CcccchHHHHHHHHHHHHhhccCCchhhHHHHHhhhhhhhHHHHHHhhcC
Q 030553 111 PLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGR 160 (175)
Q Consensus 111 ~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~ee~fdeYC~~I~~ 160 (175)
|.|...=..|+...-+||.. +.=.+++..|+........-.+|+.|+.+
T Consensus 128 P~f~~LDe~Lq~~l~~yLee-RGI~~~la~fl~~y~~~KEq~EYi~WL~~ 176 (182)
T 3jv1_A 128 PDLADLEDHLVDSFTSYLSA-RGVNDTLANFIDQFSLWSEQADYEEWLSS 176 (182)
T ss_dssp CCGGGSCHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444567999999999975 34557788888766666778899999864
No 14
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast ST genomics consortium, NESG; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=22.28 E-value=14 Score=26.58 Aligned_cols=21 Identities=24% Similarity=0.628 Sum_probs=15.2
Q ss_pred hHHHHHHhhcCCCcccchHhH
Q 030553 150 SLKRYCQRIGRSDFWGGESEL 170 (175)
Q Consensus 150 ~fdeYC~~I~~t~~WGGeiEL 170 (175)
|.|+=+-.|++++.|||.+.|
T Consensus 41 DLEE~VVs~E~~~~WGG~vtL 61 (87)
T 2jn4_A 41 DLEELIVEMENPALWGGKVTL 61 (87)
T ss_dssp TEEEEEEEESSSSSCSSEEEE
T ss_pred cchhheeeeecccccCcEEEE
Confidence 344445567799999998876
No 15
>3qv0_A Mitochondrial acidic protein MAM33; A BOWL like structure, mitochondrial oxidative phosphorylati protein binding; 2.10A {Saccharomyces cerevisiae}
Probab=21.90 E-value=1e+02 Score=25.30 Aligned_cols=49 Identities=10% Similarity=0.161 Sum_probs=36.9
Q ss_pred CcccchHHHHHHHHHHHHhhccCCchhhHHHHHhhhhhhhHHHHHHhhcC
Q 030553 111 PLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGR 160 (175)
Q Consensus 111 ~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~ee~fdeYC~~I~~ 160 (175)
|.|...=..|+...-+||.. +.=.+++..|+........-.+|+.|+.+
T Consensus 173 P~f~~LDe~Lq~~l~~yLee-RGI~~~la~fl~~y~~~KEq~EYi~WL~~ 221 (227)
T 3qv0_A 173 PPFSNLDEELQESLEAYLES-RGVNEELASFISAYSEFKENNEYISWLEK 221 (227)
T ss_dssp SCGGGSCHHHHHHHHHHHHH-TTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555567999999999975 34557788888766666778899999864
Done!