Query 030559
Match_columns 175
No_of_seqs 154 out of 261
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 01:27:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1taf_A TFIID TBP associated fa 100.0 6.7E-30 2.3E-34 180.2 9.1 68 9-76 1-68 (68)
2 1ku5_A HPHA, archaeal histon; 99.7 1.9E-16 6.4E-21 110.4 6.7 65 7-73 6-70 (70)
3 3b0c_T CENP-T, centromere prot 99.6 1.1E-15 3.7E-20 116.1 6.7 90 7-98 7-107 (111)
4 3b0b_B CENP-S, centromere prot 99.5 3.4E-15 1.2E-19 113.2 4.9 59 15-73 25-86 (107)
5 3v9r_A MHF1, uncharacterized p 99.5 7.2E-15 2.4E-19 108.4 5.9 61 12-73 19-79 (90)
6 4dra_A Centromere protein S; D 99.5 1.3E-14 4.4E-19 111.1 4.6 60 14-73 32-94 (113)
7 3vh5_A CENP-S; histone fold, c 99.4 5.4E-13 1.9E-17 105.3 7.1 60 13-73 27-86 (140)
8 2hue_C Histone H4; mini beta s 99.3 1.5E-12 5E-17 94.0 5.8 67 6-74 9-75 (84)
9 1id3_B Histone H4; nucleosome 99.3 3.4E-12 1.2E-16 95.5 7.5 67 7-75 28-94 (102)
10 1tzy_D Histone H4-VI; histone- 99.3 5.7E-12 1.9E-16 94.0 7.8 66 8-75 30-95 (103)
11 2yfw_B Histone H4, H4; cell cy 99.3 5E-12 1.7E-16 94.4 7.3 65 8-74 30-94 (103)
12 1taf_B TFIID TBP associated fa 99.2 2.2E-11 7.4E-16 86.0 7.7 64 7-72 6-69 (70)
13 1f1e_A Histone fold protein; a 99.0 5.3E-10 1.8E-14 89.3 7.8 63 13-75 86-148 (154)
14 1b67_A Protein (histone HMFA); 99.0 1.4E-09 4.7E-14 74.7 6.9 60 14-73 7-66 (68)
15 2ly8_A Budding yeast chaperone 99.0 1.2E-09 4E-14 84.4 7.2 57 20-76 58-114 (121)
16 2l5a_A Histone H3-like centrom 98.9 1.2E-09 4E-14 92.5 6.9 64 11-74 161-226 (235)
17 1f1e_A Histone fold protein; a 98.8 7.6E-09 2.6E-13 82.6 7.8 62 13-74 8-70 (154)
18 2hue_B Histone H3; mini beta s 98.8 1.5E-08 5.2E-13 72.6 8.4 65 12-76 10-75 (77)
19 3nqj_A Histone H3-like centrom 98.7 4.2E-08 1.4E-12 71.1 8.0 65 12-76 10-77 (82)
20 1n1j_A NF-YB; histone-like PAI 98.7 8.5E-08 2.9E-12 69.7 8.1 75 14-89 13-89 (93)
21 2yfv_A Histone H3-like centrom 98.6 2E-07 6.8E-12 69.7 7.6 62 12-73 34-99 (100)
22 3r45_A Histone H3-like centrom 98.5 2.1E-07 7.1E-12 74.6 8.1 65 12-76 84-151 (156)
23 1tzy_C Histone H3; histone-fol 98.5 2.7E-07 9.4E-12 72.4 8.2 65 12-76 69-134 (136)
24 3nqu_A Histone H3-like centrom 98.5 2.3E-07 7.8E-12 73.2 7.3 65 12-76 68-135 (140)
25 3b0c_W CENP-W, centromere prot 98.5 4.9E-07 1.7E-11 63.6 8.2 69 6-76 3-72 (76)
26 2nqb_C Histone H2A; nucleosome 98.4 7.3E-07 2.5E-11 68.6 7.4 62 12-73 26-88 (123)
27 2f8n_G Core histone macro-H2A. 98.4 7.7E-07 2.6E-11 68.2 6.9 61 13-73 26-87 (120)
28 1tzy_A Histone H2A-IV; histone 98.3 1.1E-06 3.7E-11 68.2 7.4 62 12-73 28-90 (129)
29 2f8n_K Histone H2A type 1; nuc 98.3 1.5E-06 5.1E-11 69.1 7.3 62 12-73 47-109 (149)
30 1id3_C Histone H2A.1; nucleoso 98.3 1.3E-06 4.6E-11 67.8 6.7 62 12-73 28-90 (131)
31 1f66_C Histone H2A.Z; nucleoso 98.2 2.6E-06 9E-11 65.9 7.0 62 12-73 30-93 (128)
32 2byk_B Chrac-14; nucleosome sl 98.2 4.5E-06 1.5E-10 64.4 7.1 86 1-90 1-91 (128)
33 1jfi_B DR1 protein, transcript 98.1 6.7E-06 2.3E-10 67.0 7.9 80 7-89 15-95 (179)
34 1n1j_B NF-YC; histone-like PAI 98.1 6.6E-06 2.3E-10 60.3 7.0 67 13-79 23-90 (97)
35 2jss_A Chimera of histone H2B. 98.1 9.4E-06 3.2E-10 66.2 7.8 62 12-73 108-171 (192)
36 1jfi_A Transcription regulator 97.9 1.1E-05 3.7E-10 59.4 4.5 68 12-79 14-82 (98)
37 2nqb_D Histone H2B; nucleosome 97.6 0.00021 7.1E-09 55.2 7.4 64 12-75 36-100 (123)
38 4g92_C HAPE; transcription fac 97.5 0.00025 8.5E-09 53.8 7.1 67 13-79 45-112 (119)
39 1tzy_B Histone H2B; histone-fo 97.5 0.00031 1.1E-08 54.5 7.4 63 13-75 40-103 (126)
40 1h3o_B Transcription initiatio 97.3 0.0011 3.8E-08 47.2 7.9 62 15-76 11-73 (76)
41 2jss_A Chimera of histone H2B. 97.2 0.0013 4.4E-08 53.5 8.1 64 12-75 6-70 (192)
42 2l5a_A Histone H3-like centrom 97.1 0.00079 2.7E-08 57.0 5.9 65 12-76 18-86 (235)
43 2byk_A Chrac-16; nucleosome sl 96.3 0.0051 1.7E-07 48.0 5.2 69 13-81 23-93 (140)
44 3uk6_A RUVB-like 2; hexameric 95.1 0.12 4E-06 42.9 9.0 62 13-75 266-331 (368)
45 3bos_A Putative DNA replicatio 93.5 0.28 9.6E-06 37.2 7.6 59 12-72 180-241 (242)
46 2r44_A Uncharacterized protein 92.9 1.1 3.9E-05 36.6 10.9 68 26-93 226-324 (331)
47 1g8p_A Magnesium-chelatase 38 92.9 0.62 2.1E-05 38.0 9.1 55 26-80 267-328 (350)
48 2c9o_A RUVB-like 1; hexameric 92.5 0.41 1.4E-05 42.0 8.0 65 11-76 367-439 (456)
49 2keb_A DNA polymerase subunit 92.2 0.8 2.8E-05 34.1 8.0 63 5-68 21-86 (101)
50 4dra_E Centromere protein X; D 92.1 1 3.5E-05 32.3 8.3 60 7-69 12-75 (84)
51 2ly8_A Budding yeast chaperone 91.9 0.93 3.2E-05 34.6 8.4 62 12-73 8-79 (121)
52 3k1j_A LON protease, ATP-depen 90.0 1.3 4.6E-05 40.2 9.1 50 24-73 312-374 (604)
53 2v1u_A Cell division control p 89.5 1.6 5.5E-05 35.5 8.4 69 25-93 221-301 (387)
54 1in4_A RUVB, holliday junction 89.3 3 0.0001 34.7 10.1 80 14-95 188-272 (334)
55 2chg_A Replication factor C sm 88.9 0.99 3.4E-05 33.2 6.2 57 13-72 168-224 (226)
56 1jr3_D DNA polymerase III, del 86.4 0.92 3.1E-05 37.6 5.1 63 12-75 148-210 (343)
57 2qby_A CDC6 homolog 1, cell di 86.0 5 0.00017 32.4 9.3 50 25-74 217-272 (386)
58 1njg_A DNA polymerase III subu 84.8 2 6.7E-05 31.8 5.8 54 13-71 192-248 (250)
59 2qby_B CDC6 homolog 3, cell di 83.8 4.2 0.00014 33.3 8.0 49 25-75 217-271 (384)
60 1sxj_D Activator 1 41 kDa subu 83.3 1 3.4E-05 36.6 3.9 59 13-72 199-261 (353)
61 1fnn_A CDC6P, cell division co 83.2 7 0.00024 31.8 9.0 68 26-93 214-299 (389)
62 3ksy_A SOS-1, SON of sevenless 83.0 2.8 9.5E-05 41.2 7.5 62 12-73 107-168 (1049)
63 1h3o_A Transcription initiatio 82.7 1.8 6.1E-05 30.5 4.4 43 15-57 12-54 (75)
64 3pfi_A Holliday junction ATP-d 82.7 8.4 0.00029 31.3 9.3 80 13-94 191-275 (338)
65 1w5s_A Origin recognition comp 79.7 13 0.00046 30.5 9.6 68 26-93 236-319 (412)
66 1hqc_A RUVB; extended AAA-ATPa 78.6 4.7 0.00016 32.3 6.3 83 13-97 175-262 (324)
67 3b0b_C CENP-X, centromere prot 78.3 8.6 0.00029 27.1 6.9 62 6-69 7-71 (81)
68 3fes_A ATP-dependent CLP endop 77.8 4.1 0.00014 30.1 5.4 58 14-73 47-116 (145)
69 4e2i_2 DNA polymerase alpha su 76.4 4.5 0.00015 28.7 4.9 54 11-65 4-60 (78)
70 1bh9_B TAFII28; histone fold, 74.0 20 0.00067 25.6 7.9 49 25-73 32-81 (89)
71 3fh2_A Probable ATP-dependent 73.8 7.3 0.00025 28.6 5.8 58 14-73 46-116 (146)
72 2qz4_A Paraplegin; AAA+, SPG7, 73.5 2.4 8.3E-05 32.9 3.2 61 13-74 184-249 (262)
73 1k6k_A ATP-dependent CLP prote 72.3 16 0.00054 26.2 7.3 57 15-73 40-114 (143)
74 3h4m_A Proteasome-activating n 71.2 7.4 0.00025 30.7 5.6 60 14-75 196-259 (285)
75 3kw6_A 26S protease regulatory 71.1 4.3 0.00015 27.0 3.6 60 13-75 10-74 (78)
76 2y1q_A CLPC N-domain, negative 66.6 25 0.00086 25.3 7.4 58 14-73 45-114 (150)
77 1jr3_A DNA polymerase III subu 65.3 8.4 0.00029 31.3 4.9 54 13-71 185-241 (373)
78 3pvs_A Replication-associated 64.8 7.5 0.00026 34.3 4.8 61 13-74 172-244 (447)
79 2zc2_A DNAD-like replication p 63.5 18 0.00061 24.1 5.6 41 7-50 18-65 (78)
80 1r6b_X CLPA protein; AAA+, N-t 61.5 35 0.0012 31.4 8.9 62 13-75 356-434 (758)
81 1ixz_A ATP-dependent metallopr 60.1 11 0.00036 29.5 4.5 60 11-71 187-253 (254)
82 3nbx_X ATPase RAVA; AAA+ ATPas 59.5 9.6 0.00033 34.4 4.6 45 26-70 225-282 (500)
83 2z4s_A Chromosomal replication 59.5 13 0.00043 32.5 5.3 60 14-75 271-333 (440)
84 3f9v_A Minichromosome maintena 59.1 8.9 0.0003 35.1 4.4 34 41-74 554-587 (595)
85 2chq_A Replication factor C sm 57.2 15 0.0005 29.0 4.9 56 13-71 168-223 (319)
86 3zri_A CLPB protein, CLPV; cha 57.0 25 0.00084 27.2 6.1 57 14-73 64-134 (171)
87 1wwi_A Hypothetical protein TT 56.0 11 0.00036 29.8 3.7 53 14-67 7-60 (148)
88 1lv7_A FTSH; alpha/beta domain 55.5 15 0.00053 28.6 4.7 36 39-74 217-252 (257)
89 1iy2_A ATP-dependent metallopr 55.2 18 0.00061 28.8 5.1 60 11-71 211-277 (278)
90 2i5u_A DNAD domain protein; st 51.6 48 0.0017 22.5 6.2 46 16-61 5-59 (83)
91 1sxj_B Activator 1 37 kDa subu 50.4 38 0.0013 26.6 6.3 57 13-72 173-229 (323)
92 3f8t_A Predicted ATPase involv 47.8 16 0.00056 33.7 4.1 48 26-73 414-482 (506)
93 1ofh_A ATP-dependent HSL prote 47.4 35 0.0012 26.7 5.6 53 21-73 228-298 (310)
94 3syl_A Protein CBBX; photosynt 46.6 63 0.0022 25.5 7.1 55 13-68 211-280 (309)
95 1iqp_A RFCS; clamp loader, ext 46.5 26 0.00087 27.7 4.7 53 13-68 176-228 (327)
96 3vlf_B 26S protease regulatory 45.1 39 0.0013 22.9 4.9 59 13-74 8-71 (88)
97 3vfd_A Spastin; ATPase, microt 42.8 42 0.0015 28.1 5.8 60 13-73 289-364 (389)
98 1l8q_A Chromosomal replication 42.5 16 0.00054 29.6 2.9 94 13-108 173-284 (324)
99 1r4v_A Hypothetical protein AQ 41.4 19 0.00065 28.9 3.1 58 9-67 26-84 (171)
100 3u61_B DNA polymerase accessor 41.0 9.5 0.00033 30.8 1.4 56 14-73 180-236 (324)
101 4b4t_H 26S protease regulatory 39.3 41 0.0014 30.5 5.4 62 13-74 387-450 (467)
102 2dzn_B 26S protease regulatory 38.2 34 0.0012 22.8 3.7 37 38-74 32-68 (82)
103 4b4t_I 26S protease regulatory 37.3 48 0.0016 29.9 5.4 58 13-73 360-422 (437)
104 4h62_V Mediator of RNA polymer 36.7 25 0.00084 20.5 2.3 20 22-41 4-23 (31)
105 4b4t_J 26S protease regulatory 35.7 53 0.0018 29.1 5.4 59 13-74 326-389 (405)
106 1r6b_X CLPA protein; AAA+, N-t 34.7 1.2E+02 0.004 27.8 7.8 57 15-73 40-114 (758)
107 4b4t_K 26S protease regulatory 33.7 91 0.0031 27.6 6.6 59 14-75 352-415 (428)
108 3aji_B S6C, proteasome (prosom 33.5 49 0.0017 21.8 3.8 58 13-73 8-70 (83)
109 1sxj_A Activator 1 95 kDa subu 33.0 33 0.0011 30.3 3.7 54 14-73 217-273 (516)
110 1sxj_C Activator 1 40 kDa subu 32.8 42 0.0014 27.4 4.0 58 13-71 176-236 (340)
111 1khy_A CLPB protein; alpha hel 32.3 55 0.0019 23.3 4.2 57 14-72 45-116 (148)
112 3l39_A Putative PHOU-like phos 32.1 1.3E+02 0.0044 23.8 6.8 83 7-95 21-103 (227)
113 3b9p_A CG5977-PA, isoform A; A 32.0 45 0.0015 26.3 4.0 59 14-73 197-271 (297)
114 3d8b_A Fidgetin-like protein 1 31.3 1.1E+02 0.0038 25.3 6.5 60 13-73 258-333 (357)
115 4b4t_L 26S protease subunit RP 30.5 64 0.0022 28.7 5.1 58 14-74 360-422 (437)
116 2krk_A 26S protease regulatory 29.5 56 0.0019 22.2 3.7 65 7-74 8-81 (86)
117 1u5t_A Appears to BE functiona 28.7 1.5E+02 0.005 24.5 6.7 67 6-73 52-140 (233)
118 4b4t_M 26S protease regulatory 28.1 94 0.0032 27.6 5.8 61 13-73 359-421 (434)
119 2lbf_A 60S acidic ribosomal pr 27.5 1.1E+02 0.0038 20.5 4.8 29 37-73 6-34 (69)
120 3cuq_A Vacuolar-sorting protei 27.4 1.6E+02 0.0056 24.2 6.7 59 15-73 44-126 (234)
121 3cuq_B Vacuolar protein-sortin 26.8 1.9E+02 0.0066 23.2 7.0 14 12-25 46-59 (218)
122 3a1y_A 50S ribosomal protein P 25.6 75 0.0026 20.6 3.5 30 9-39 16-45 (58)
123 2r62_A Cell division protease 22.5 29 0.001 27.0 1.2 34 40-73 219-252 (268)
124 3rq9_A TSI2, type VI secretion 22.4 38 0.0013 24.0 1.6 25 64-89 48-72 (85)
125 2olt_A Hypothetical protein; s 22.1 63 0.0022 25.2 3.1 32 64-95 62-93 (227)
126 1qvr_A CLPB protein; coiled co 20.5 2.9E+02 0.0099 25.9 7.8 71 14-90 45-130 (854)
No 1
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.96 E-value=6.7e-30 Score=180.21 Aligned_cols=68 Identities=50% Similarity=0.909 Sum_probs=66.3
Q ss_pred ChhHHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhc
Q 030559 9 PRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVN 76 (175)
Q Consensus 9 PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 76 (175)
|||+++|++||++|||++|||+|++||+||+|||+.+||+||..||+||||+||+++||||||++|++
T Consensus 1 Prda~~i~~iLk~~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~~ 68 (68)
T 1taf_A 1 PKDAQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTLD 68 (68)
T ss_dssp CHHHHHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC-
T ss_pred CchhHHHHHHHHHCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999874
No 2
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.65 E-value=1.9e-16 Score=110.41 Aligned_cols=65 Identities=29% Similarity=0.537 Sum_probs=61.2
Q ss_pred CCChhHHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 7 DLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 7 ~~PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
.+|+. .|.+|+|+.|+.+|+++++.+|.|++++|+.+|++||..||+||||+||+.+||++|+++
T Consensus 6 ~lp~a--~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 6 ELPIA--PVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CSCHH--HHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cCChH--HHHHHHHHcCcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 46665 799999999999999999999999999999999999999999999999999999999863
No 3
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.60 E-value=1.1e-15 Score=116.05 Aligned_cols=90 Identities=20% Similarity=0.343 Sum_probs=73.1
Q ss_pred CCChhHHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhccccCCC----
Q 030559 7 DLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSSFSQP---- 82 (175)
Q Consensus 7 ~~PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f~~p---- 82 (175)
.+|+- .|.+|++..|+.+++++++.+|.+++++|+..|+.||..||+||||+||+++||++|++..-...|..+
T Consensus 7 ~lP~a--~I~Ri~r~~g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~l~~l 84 (111)
T 3b0c_T 7 EIASS--LIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMPLHVL 84 (111)
T ss_dssp ---CH--HHHHHHHHHHCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBCHHHH
T ss_pred CCCHH--HHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCccccccHHHH
Confidence 34443 689999999999999999999999999999999999999999999999999999999998777778888
Q ss_pred ----CcHH---HHHHHHHhhcCC
Q 030559 83 ----PARE---VLLELAKNRNKI 98 (175)
Q Consensus 83 ----ppre---~LlelA~e~N~~ 98 (175)
+|+| .|+..|...|++
T Consensus 85 ~~~~lp~E~~~~l~~~a~~~n~~ 107 (111)
T 3b0c_T 85 VERHLPLEYRKLLIPIAVSGNKV 107 (111)
T ss_dssp HHHHSCHHHHHHHCCC-------
T ss_pred HHHhCcHHHHHHhccccccCCcc
Confidence 8888 455666666654
No 4
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=99.54 E-value=3.4e-15 Score=113.21 Aligned_cols=59 Identities=19% Similarity=0.374 Sum_probs=52.9
Q ss_pred HHHHHHhCCC---cccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 15 VKSLLKSMGV---EEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 15 I~~ILks~Gv---~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
|.+|+++.|. .+|+++|+.+|.||+|+|+.+|+.||..||+||||+||+.+||+||++.
T Consensus 25 V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 25 TGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 5555555555 5899999999999999999999999999999999999999999999865
No 5
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=99.54 E-value=7.2e-15 Score=108.39 Aligned_cols=61 Identities=26% Similarity=0.513 Sum_probs=56.5
Q ss_pred HHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 12 AKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 12 a~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
.+++...++++|+ .|+|+++.+|.|++|+|+.+|++|+..||+||||+||+.+||+||++.
T Consensus 19 ~ki~~e~~~~~g~-~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 19 EERLQQVLSSEDI-KYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHSCSSCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHhcCc-eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 3677788888898 599999999999999999999999999999999999999999999864
No 6
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=99.49 E-value=1.3e-14 Score=111.06 Aligned_cols=60 Identities=23% Similarity=0.462 Sum_probs=55.2
Q ss_pred HHHHHHHhCCCcc---cChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 14 IVKSLLKSMGVEE---YEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 14 ~I~~ILks~Gv~~---yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
.|.+|+++.|.++ |+|+++.+|.|++|+|+.+|++|+..||+||||+||+.+||+||++.
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 4677777777766 99999999999999999999999999999999999999999999864
No 7
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=99.39 E-value=5.4e-13 Score=105.33 Aligned_cols=60 Identities=20% Similarity=0.443 Sum_probs=54.8
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 13 KIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
+++.......|+ .|+++++.+|.|++|+|+.+|+.|+..||+||||+||+.+||+||++.
T Consensus 27 kIvee~~~~~~~-~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 27 ALAQDVAEDKGV-LFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHHTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHhcCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 566666677787 499999999999999999999999999999999999999999999965
No 8
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.33 E-value=1.5e-12 Score=94.01 Aligned_cols=67 Identities=22% Similarity=0.398 Sum_probs=62.6
Q ss_pred CCCChhHHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030559 6 EDLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSK 74 (175)
Q Consensus 6 ~~~PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
..+|..+ |.+|+++.|+.++++++...|.+.++.|..+|++||..|++||||+||+++||.+|++..
T Consensus 9 ~~ip~~~--I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 9 QGITKPA--IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp CSSCHHH--HHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred CCCCHHH--HHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3467664 899999999999999999999999999999999999999999999999999999999864
No 9
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.32 E-value=3.4e-12 Score=95.48 Aligned_cols=67 Identities=19% Similarity=0.360 Sum_probs=62.5
Q ss_pred CCChhHHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030559 7 DLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKV 75 (175)
Q Consensus 7 ~~PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
.+|.+ .|.+|+++.|+.++++++...|.+.++.|+.+|++||..|++||+|+||+++||.+|++...
T Consensus 28 ~ip~~--~I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g 94 (102)
T 1id3_B 28 GITKP--AIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 94 (102)
T ss_dssp GSCHH--HHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCCHH--HHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 46665 59999999999999999999999999999999999999999999999999999999998753
No 10
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.30 E-value=5.7e-12 Score=93.98 Aligned_cols=66 Identities=21% Similarity=0.362 Sum_probs=61.8
Q ss_pred CChhHHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030559 8 LPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKV 75 (175)
Q Consensus 8 ~PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
+|.. .|++|+++.|+.+++.++...|.+.++.|+.+|++||..||+||+|+||+.+||.+|++...
T Consensus 30 ip~~--~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g 95 (103)
T 1tzy_D 30 ITKP--AIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 95 (103)
T ss_dssp SCHH--HHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCHH--HHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcC
Confidence 4554 59999999999999999999999999999999999999999999999999999999998753
No 11
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.30 E-value=5e-12 Score=94.39 Aligned_cols=65 Identities=22% Similarity=0.398 Sum_probs=61.4
Q ss_pred CChhHHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030559 8 LPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSK 74 (175)
Q Consensus 8 ~PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
+|.. .|.+|+++.|+.+++.++...|.+.++.|+.+|++||..||+||+|+||+.+||.+|++..
T Consensus 30 ip~~--~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 30 ITKP--AIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp CCHH--HHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCHH--HHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 5554 5999999999999999999999999999999999999999999999999999999999874
No 12
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.24 E-value=2.2e-11 Score=86.03 Aligned_cols=64 Identities=17% Similarity=0.317 Sum_probs=60.1
Q ss_pred CCChhHHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 030559 7 DLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQ 72 (175)
Q Consensus 7 ~~PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~ 72 (175)
.+|. ..|.+|.++.|++++++++...|.+-++.++.+|+++|..|++|+||++++.+||.+|++
T Consensus 6 ~lp~--~~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 6 SISA--ESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCH--HHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cCCH--HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 4555 469999999999999999999999999999999999999999999999999999999975
No 13
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.03 E-value=5.3e-10 Score=89.30 Aligned_cols=63 Identities=19% Similarity=0.385 Sum_probs=60.4
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030559 13 KIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKV 75 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
-.|.+|+|..|+.+++.++...|.+.+..|+..|+++|..||+|+||+||+.+||.+|++..+
T Consensus 86 a~V~Ri~k~~g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~ 148 (154)
T 1f1e_A 86 ATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSM 148 (154)
T ss_dssp HHHHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHS
T ss_pred cHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcC
Confidence 469999999999999999999999999999999999999999999999999999999998754
No 14
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.97 E-value=1.4e-09 Score=74.74 Aligned_cols=60 Identities=23% Similarity=0.346 Sum_probs=56.8
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 14 IVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
-|.+|+|+.|..+++.+++..|-+.++.|...|..||..+|.|+||+||+.+||.+|++.
T Consensus 7 ~v~Ri~k~~~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 7 PIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred HHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 478888888999999999999999999999999999999999999999999999999853
No 15
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.97 E-value=1.2e-09 Score=84.41 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=53.2
Q ss_pred HhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhc
Q 030559 20 KSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVN 76 (175)
Q Consensus 20 ks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 76 (175)
...||.+++..+...+.+.+..|..+|+.||..|++|||||||+++||.+|++.+-.
T Consensus 58 ~~gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~ 114 (121)
T 2ly8_A 58 VPRGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 114 (121)
T ss_dssp CCCCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC
T ss_pred CccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC
Confidence 456999999999999999999999999999999999999999999999999987443
No 16
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.94 E-value=1.2e-09 Score=92.51 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=58.8
Q ss_pred hHHHHH--HHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030559 11 DAKIVK--SLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSK 74 (175)
Q Consensus 11 Da~~I~--~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
|.-.|. +|++..||.++|..+...+.+.+..|..+|+.||..|++||||+||+++||.+|++..
T Consensus 161 D~i~i~~~RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 161 DIIDISDEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp HHHHHTCCTTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred HhhcccHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 333344 8899999999999999999999999999999999999999999999999999999874
No 17
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.83 E-value=7.6e-09 Score=82.61 Aligned_cols=62 Identities=11% Similarity=0.124 Sum_probs=59.3
Q ss_pred HHHHHHHHhC-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030559 13 KIVKSLLKSM-GVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSK 74 (175)
Q Consensus 13 ~~I~~ILks~-Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
-.|.+|+|.. |+.+++.++...|.+.+..|+..|.++|..||+|+||+||+++||..|....
T Consensus 8 a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~l 70 (154)
T 1f1e_A 8 AAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVL 70 (154)
T ss_dssp HHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhc
Confidence 3689999999 9999999999999999999999999999999999999999999999999763
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.83 E-value=1.5e-08 Score=72.63 Aligned_cols=65 Identities=20% Similarity=0.331 Sum_probs=58.8
Q ss_pred HHHHHHHHHhC-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhc
Q 030559 12 AKIVKSLLKSM-GVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVN 76 (175)
Q Consensus 12 a~~I~~ILks~-Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 76 (175)
.|+|..|..+. |..+|+..++..|-|.++.|...+.+||...|.||||.||...||+||.+.|..
T Consensus 10 ~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 75 (77)
T 2hue_B 10 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 75 (77)
T ss_dssp HHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCc
Confidence 36777776655 678999999999999999999999999999999999999999999999988754
No 19
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.72 E-value=4.2e-08 Score=71.12 Aligned_cols=65 Identities=17% Similarity=0.286 Sum_probs=57.7
Q ss_pred HHHHHHHHHhCC---CcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhc
Q 030559 12 AKIVKSLLKSMG---VEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVN 76 (175)
Q Consensus 12 a~~I~~ILks~G---v~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 76 (175)
.|+|..|-.+.. ..+|+..++..|-|.++.|..++.+||...|.||||.||...||+||...|..
T Consensus 10 ~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~ 77 (82)
T 3nqj_A 10 SRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 77 (82)
T ss_dssp HHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHccc
Confidence 467777776543 56999999999999999999999999999999999999999999999988764
No 20
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.66 E-value=8.5e-08 Score=69.67 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=64.2
Q ss_pred HHHHHHHhCCC--cccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhccccCCCCcHHHHH
Q 030559 14 IVKSLLKSMGV--EEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSSFSQPPAREVLL 89 (175)
Q Consensus 14 ~I~~ILks~Gv--~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f~~pppre~Ll 89 (175)
-|.+|+|+.|. .+++.+++..|.+.+..|+..+..+|..+|.|+||+||..+||..|++ ++++...-+|-+.+|-
T Consensus 13 ~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~-~l~F~~~i~~~~~~l~ 89 (93)
T 1n1j_A 13 NVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS-TLGFDSYVEPLKLYLQ 89 (93)
T ss_dssp HHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH-HcCcHhhHHHHHHHHH
Confidence 57889999865 689999999999999999999999999999999999999999999997 5776544444444443
No 21
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.55 E-value=2e-07 Score=69.72 Aligned_cols=62 Identities=24% Similarity=0.331 Sum_probs=55.5
Q ss_pred HHHHHHHHHhCC----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 12 AKIVKSLLKSMG----VEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 12 a~~I~~ILks~G----v~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
.|+|..|..+.. ..+|+..++..|-|.++.|...+.+||...|.||||.||...||+||...
T Consensus 34 ~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 99 (100)
T 2yfv_A 34 ARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI 99 (100)
T ss_dssp HHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred HHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence 477888877653 56999999999999999999999999999999999999999999999864
No 22
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.55 E-value=2.1e-07 Score=74.60 Aligned_cols=65 Identities=17% Similarity=0.286 Sum_probs=58.7
Q ss_pred HHHHHHHHHhCC---CcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhc
Q 030559 12 AKIVKSLLKSMG---VEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVN 76 (175)
Q Consensus 12 a~~I~~ILks~G---v~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 76 (175)
.++|..|..+.. ..+|+..++..|-|.++.|...+++||..+|.||+|.||...||+||...|..
T Consensus 84 ~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~ 151 (156)
T 3r45_A 84 SRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 151 (156)
T ss_dssp HHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHccc
Confidence 477888887664 46999999999999999999999999999999999999999999999988753
No 23
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.53 E-value=2.7e-07 Score=72.38 Aligned_cols=65 Identities=20% Similarity=0.333 Sum_probs=58.5
Q ss_pred HHHHHHHHHhC-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhc
Q 030559 12 AKIVKSLLKSM-GVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVN 76 (175)
Q Consensus 12 a~~I~~ILks~-Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 76 (175)
.++|..|..+. |..+|+..++..|-|.++.|...+.+||...|.||||.||...||+||...|..
T Consensus 69 ~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 134 (136)
T 1tzy_C 69 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
T ss_dssp HHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCc
Confidence 36777776655 678999999999999999999999999999999999999999999999988754
No 24
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.51 E-value=2.3e-07 Score=73.20 Aligned_cols=65 Identities=17% Similarity=0.286 Sum_probs=57.2
Q ss_pred HHHHHHHHHhCC---CcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhc
Q 030559 12 AKIVKSLLKSMG---VEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVN 76 (175)
Q Consensus 12 a~~I~~ILks~G---v~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 76 (175)
.++|..|..+.. ..+|+..++..|-|.++.|..++.+||...|.||+|.||...||+||...|..
T Consensus 68 ~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~ 135 (140)
T 3nqu_A 68 SRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 135 (140)
T ss_dssp HHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhccc
Confidence 467777775542 46999999999999999999999999999999999999999999999988753
No 25
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.51 E-value=4.9e-07 Score=63.62 Aligned_cols=69 Identities=9% Similarity=0.089 Sum_probs=60.1
Q ss_pred CCCChhHHHHHHHHH-hCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhc
Q 030559 6 EDLPRDAKIVKSLLK-SMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVN 76 (175)
Q Consensus 6 ~~~PrDa~~I~~ILk-s~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 76 (175)
..+|+ -.|.+|+| .++-..++.++...+.+++..|+..|..+|...|.|+||+||+.+||..|++..+.
T Consensus 3 ~~LP~--A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~ 72 (76)
T 3b0c_W 3 RTVPR--GTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVILK 72 (76)
T ss_dssp -CCCH--HHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred Ccccc--cHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 34565 35788999 44767899999999999999999999999999999999999999999999987553
No 26
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.40 E-value=7.3e-07 Score=68.59 Aligned_cols=62 Identities=19% Similarity=0.110 Sum_probs=59.0
Q ss_pred HHHHHHHHHhC-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 12 AKIVKSLLKSM-GVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 12 a~~I~~ILks~-Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
+--|+++|++. ++.+++..+...|...++-++.+||+.|..+|.|+++++|+.+||++||+.
T Consensus 26 V~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 26 VGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp HHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 45689999997 999999999999999999999999999999999999999999999999986
No 27
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.37 E-value=7.7e-07 Score=68.20 Aligned_cols=61 Identities=15% Similarity=-0.007 Sum_probs=58.4
Q ss_pred HHHHHHHHhCC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 13 KIVKSLLKSMG-VEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 13 ~~I~~ILks~G-v~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
--|+++|++.+ +.+++..+...|...++-++.+||+.|-.+|.|+|+++|+.+||++||+.
T Consensus 26 ~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 26 GRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 46999999998 88999999999999999999999999999999999999999999999986
No 28
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.35 E-value=1.1e-06 Score=68.22 Aligned_cols=62 Identities=19% Similarity=0.111 Sum_probs=58.9
Q ss_pred HHHHHHHHHhC-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 12 AKIVKSLLKSM-GVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 12 a~~I~~ILks~-Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
+--|+++|++. ++.+++..+...|...++-++.+||+.|..+|.|+|+++|+.+||++||+.
T Consensus 28 V~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 28 VGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp HHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 34689999996 999999999999999999999999999999999999999999999999986
No 29
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.30 E-value=1.5e-06 Score=69.07 Aligned_cols=62 Identities=19% Similarity=0.105 Sum_probs=59.0
Q ss_pred HHHHHHHHHhC-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 12 AKIVKSLLKSM-GVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 12 a~~I~~ILks~-Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
+--|+++|++. ++.+++..+...|...++-++.+||+.|..+|.|+++++|+.+||++||+.
T Consensus 47 VgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 47 VGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 34689999997 999999999999999999999999999999999999999999999999986
No 30
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.29 E-value=1.3e-06 Score=67.84 Aligned_cols=62 Identities=18% Similarity=0.102 Sum_probs=59.2
Q ss_pred HHHHHHHHHhC-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 12 AKIVKSLLKSM-GVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 12 a~~I~~ILks~-Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
+--|+++|++. ++.+++..+...|...++-++.+||+.|..+|.|+++++|+.+||++||+.
T Consensus 28 V~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 28 VGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp HHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 45799999996 999999999999999999999999999999999999999999999999986
No 31
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.23 E-value=2.6e-06 Score=65.94 Aligned_cols=62 Identities=16% Similarity=0.059 Sum_probs=58.2
Q ss_pred HHHHHHHHHhCC-C-cccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 12 AKIVKSLLKSMG-V-EEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 12 a~~I~~ILks~G-v-~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
+--|+++|++.+ + .+++..+...|...++-++.+||+.|-.+|.|+|+++|+.+||++||+.
T Consensus 30 V~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 30 VGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp HHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred hHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 346999999998 4 4999999999999999999999999999999999999999999999986
No 32
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.16 E-value=4.5e-06 Score=64.44 Aligned_cols=86 Identities=17% Similarity=0.213 Sum_probs=64.4
Q ss_pred CCCCCC--CCChhHHHHHHHHHhCC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhc
Q 030559 1 MAEGDE--DLPRDAKIVKSLLKSMG--VEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVN 76 (175)
Q Consensus 1 m~~~~~--~~PrDa~~I~~ILks~G--v~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 76 (175)
|++... .+|. -.|.+|+|+.+ +..++.+++..|.+.+..|+..|...|..+|.|.+|+||+.+||..|+.. ++
T Consensus 1 m~e~~~d~~LP~--A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~-l~ 77 (128)
T 2byk_B 1 MVERIEDLNLPN--AVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTE-LD 77 (128)
T ss_dssp ----------CC--SHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH-TT
T ss_pred CCCccccccCCH--HHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH-cC
Confidence 444333 4454 35889999754 67899999999999999999999999999999999999999999999987 55
Q ss_pred -cccCCCCcHHHHHH
Q 030559 77 -SSFSQPPAREVLLE 90 (175)
Q Consensus 77 -~~f~~pppre~Lle 90 (175)
+.|.. |=+.+|-+
T Consensus 78 f~~fl~-~lk~~l~~ 91 (128)
T 2byk_B 78 FESFVP-SLTQDLEV 91 (128)
T ss_dssp CTTTHH-HHHHHHHH
T ss_pred cHHHHH-HHHHHHHH
Confidence 34443 44444443
No 33
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.13 E-value=6.7e-06 Score=67.05 Aligned_cols=80 Identities=14% Similarity=0.185 Sum_probs=67.2
Q ss_pred CCChhHHHHHHHHHhCCC-cccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhccccCCCCcH
Q 030559 7 DLPRDAKIVKSLLKSMGV-EEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSSFSQPPAR 85 (175)
Q Consensus 7 ~~PrDa~~I~~ILks~Gv-~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f~~pppr 85 (175)
.+|+ -.|.+|+|+.|- .+++.++...|.+.+..|+.-|...|...|.|+||+||+.+||..|+. ++++...-+|=+
T Consensus 15 ~LP~--A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~-~LgF~~fv~~lk 91 (179)
T 1jfi_B 15 TIPR--AAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE-SLGFGSYISEVK 91 (179)
T ss_dssp CCCH--HHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HHTTGGGHHHHH
T ss_pred hcCH--HHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH-hcChHHHHHHHH
Confidence 5676 468899999873 689999999999999999999999999999999999999999999998 477654444444
Q ss_pred HHHH
Q 030559 86 EVLL 89 (175)
Q Consensus 86 e~Ll 89 (175)
.+|-
T Consensus 92 ~~L~ 95 (179)
T 1jfi_B 92 EVLQ 95 (179)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 34
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.12 E-value=6.6e-06 Score=60.34 Aligned_cols=67 Identities=15% Similarity=0.178 Sum_probs=60.7
Q ss_pred HHHHHHHHhCCC-cccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhcccc
Q 030559 13 KIVKSLLKSMGV-EEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSSF 79 (175)
Q Consensus 13 ~~I~~ILks~Gv-~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f 79 (175)
--|++|+|+.+- ..++.+++..|...++.++.++++.|...|.+.+|+||+.+||.+||+.--.+.|
T Consensus 23 arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~F 90 (97)
T 1n1j_B 23 ARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDF 90 (97)
T ss_dssp HHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGG
T ss_pred HHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHH
Confidence 468999999954 6899999999999999999999999999999999999999999999987555555
No 35
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.08 E-value=9.4e-06 Score=66.15 Aligned_cols=62 Identities=16% Similarity=0.100 Sum_probs=58.1
Q ss_pred HHHHHHHHHhC-CC-cccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 12 AKIVKSLLKSM-GV-EEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 12 a~~I~~ILks~-Gv-~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
+--|+++|++. ++ .+++..+...|...++-++.+||+.|-.+|.|+|+++|+.+||++||+.
T Consensus 108 v~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 108 VGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp HHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred HHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 45789999997 66 6999999999999999999999999999999999999999999999985
No 36
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.89 E-value=1.1e-05 Score=59.42 Aligned_cols=68 Identities=9% Similarity=0.103 Sum_probs=54.2
Q ss_pred HHHHHHHHHhCCC-cccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhcccc
Q 030559 12 AKIVKSLLKSMGV-EEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSSF 79 (175)
Q Consensus 12 a~~I~~ILks~Gv-~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f 79 (175)
+--|++|||+.+- .+++..++..|...++-++.+|++.|...|.+.||++|+..||.+||+.--.+.|
T Consensus 14 vaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~F 82 (98)
T 1jfi_A 14 PARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAA 82 (98)
T ss_dssp HHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-------
T ss_pred hHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhH
Confidence 4568999999854 7899999999999999999999999999999999999999999999987444444
No 37
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.57 E-value=0.00021 Score=55.24 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=58.8
Q ss_pred HHHHHHHHHhCCCc-ccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030559 12 AKIVKSLLKSMGVE-EYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKV 75 (175)
Q Consensus 12 a~~I~~ILks~Gv~-~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
..-|.++||..+-. ..+.++...|..|++.....|..+|..++.|++|+||+..||+.|++.-+
T Consensus 36 ~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlL 100 (123)
T 2nqb_D 36 AIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLL 100 (123)
T ss_dssp HHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhC
Confidence 35789999988765 79999999999999999999999999999999999999999999998744
No 38
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=97.52 E-value=0.00025 Score=53.82 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=59.9
Q ss_pred HHHHHHHHhC-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhcccc
Q 030559 13 KIVKSLLKSM-GVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSSF 79 (175)
Q Consensus 13 ~~I~~ILks~-Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f 79 (175)
--|++|+|.. .+..++.+++..+...++.++..|+..|...|...+|+||+.+||..||+.--.+.|
T Consensus 45 aRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dF 112 (119)
T 4g92_C 45 ARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDF 112 (119)
T ss_dssp HHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGG
T ss_pred HHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhH
Confidence 4589999965 677999999999999999999999999999999999999999999999977444555
No 39
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.49 E-value=0.00031 Score=54.47 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=58.4
Q ss_pred HHHHHHHHhCCCc-ccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030559 13 KIVKSLLKSMGVE-EYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKV 75 (175)
Q Consensus 13 ~~I~~ILks~Gv~-~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
.-|.++||..+-. ..+.++...|.-|++.....|..+|..++.|++|+||+..||+.|++.-+
T Consensus 40 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlL 103 (126)
T 1tzy_B 40 IYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLL 103 (126)
T ss_dssp HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 4699999998765 79999999999999999999999999999999999999999999998744
No 40
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.31 E-value=0.0011 Score=47.17 Aligned_cols=62 Identities=19% Similarity=0.371 Sum_probs=53.5
Q ss_pred HHHHHHhC-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhc
Q 030559 15 VKSLLKSM-GVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVN 76 (175)
Q Consensus 15 I~~ILks~-Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 76 (175)
+..++++. |-...+|+|-..|+++|..|+.+|+..|..+|+|-|-.+|+.-||++.++..-+
T Consensus 11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~wn 73 (76)
T 1h3o_B 11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWN 73 (76)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhhcC
Confidence 44555554 556899999999999999999999999999999999999999999999876433
No 41
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.18 E-value=0.0013 Score=53.47 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=58.2
Q ss_pred HHHHHHHHHhCCC-cccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030559 12 AKIVKSLLKSMGV-EEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKV 75 (175)
Q Consensus 12 a~~I~~ILks~Gv-~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
...|.++||..+- ...+.++...|-.|+.+....|..+|..++.|++|+||+..||+.|++.-+
T Consensus 6 ~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~l 70 (192)
T 2jss_A 6 SSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLIL 70 (192)
T ss_dssp HHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhc
Confidence 3568899998865 579999999999999999999999999999999999999999999998643
No 42
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.00079 Score=56.97 Aligned_cols=65 Identities=23% Similarity=0.308 Sum_probs=58.9
Q ss_pred HHHHHHHHHhCC----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhc
Q 030559 12 AKIVKSLLKSMG----VEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVN 76 (175)
Q Consensus 12 a~~I~~ILks~G----v~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 76 (175)
.|+|..|..+.. --+|+..++..|-|-++.|...+.+|+...|-||+|-||-.-||+||...|..
T Consensus 18 qRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~ 86 (235)
T 2l5a_A 18 ARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQ 86 (235)
T ss_dssp HHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCS
T ss_pred HHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhc
Confidence 478899988764 35899999999999999999999999999999999999999999999877654
No 43
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=96.31 E-value=0.0051 Score=48.01 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=55.3
Q ss_pred HHHHHHHHhC-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHH-hHhCCCCCCHHHHHHHHHHhhccccCC
Q 030559 13 KIVKSLLKSM-GVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYS-EHAGKTTIDCDDIKLAVQSKVNSSFSQ 81 (175)
Q Consensus 13 ~~I~~ILks~-Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA-~HAgR~tI~~eDVrLAI~~r~~~~f~~ 81 (175)
--|++|+|.- .+..++..++..+-..++-++..|+..|...| ...+|+||+..||..||...-.+.|-.
T Consensus 23 aRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 23 SRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp ------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred HHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 3578888887 44579999999999999999999999999999 888999999999999998754556633
No 44
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.05 E-value=0.12 Score=42.85 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=53.0
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHH----HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030559 13 KIVKSLLKSMGVEEYEPRVIHQFLEVWY----RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKV 75 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfay----rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
.++...++..|+ .++++++..|.+++. |++..++..|..+|...|+..|+.+||+-|+..-+
T Consensus 266 ~il~~~~~~~~~-~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 266 QILRIRCEEEDV-EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp HHHHHHHHHTTC-CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSB
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 455556667787 599999999999984 89999999999999999999999999999998633
No 45
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.55 E-value=0.28 Score=37.23 Aligned_cols=59 Identities=15% Similarity=0.089 Sum_probs=47.1
Q ss_pred HHHHHHHHHhCCCcccChHHHHHHHHHHH---HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 030559 12 AKIVKSLLKSMGVEEYEPRVIHQFLEVWY---RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQ 72 (175)
Q Consensus 12 a~~I~~ILks~Gv~~yep~Vv~qLlEfay---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~ 72 (175)
.+++..+++..|+ .++++++..|.+.+. |.+..++..|..+|...|+ .|+.+||+-+++
T Consensus 180 ~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~~l~ 241 (242)
T 3bos_A 180 LAALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQR-KLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHHT
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHhh
Confidence 3566777777887 599999999998876 6777888888888866664 699999998874
No 46
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.89 E-value=1.1 Score=36.62 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=51.7
Q ss_pred ccChHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhccccC--
Q 030559 26 EYEPRVIHQFLEVW-----------------------YRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSSFS-- 80 (175)
Q Consensus 26 ~yep~Vv~qLlEfa-----------------------yrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f~-- 80 (175)
.+++.+...+.+++ -|-+..++.-|..+|...|+..|+.+||+.|+..-+.+...
T Consensus 226 ~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r~~~~ 305 (331)
T 2r44_A 226 TISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHRIILN 305 (331)
T ss_dssp BCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTTSEEC
T ss_pred CCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhhccCC
Confidence 47888998888876 46667889999999999999999999999999876655443
Q ss_pred ------CCCcHHHHHHHHH
Q 030559 81 ------QPPAREVLLELAK 93 (175)
Q Consensus 81 ------~pppre~LlelA~ 93 (175)
+-.+.+.+-++..
T Consensus 306 ~~~~~~~~~~~~i~~~i~~ 324 (331)
T 2r44_A 306 YEAEAEGISTRQIIETILR 324 (331)
T ss_dssp HHHHHTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHh
Confidence 2234555555544
No 47
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.85 E-value=0.62 Score=37.97 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=48.5
Q ss_pred ccChHHHHHHHHHHH-------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhccccC
Q 030559 26 EYEPRVIHQFLEVWY-------RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSSFS 80 (175)
Q Consensus 26 ~yep~Vv~qLlEfay-------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f~ 80 (175)
.+++++...|.+++. |....++.-|..+|...|+..|+.+||+.|+..-+.+.+.
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~~ 328 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRLR 328 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGCC
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhccc
Confidence 699999999999976 6788899999999999999999999999999987766554
No 48
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=92.49 E-value=0.41 Score=42.01 Aligned_cols=65 Identities=18% Similarity=0.349 Sum_probs=52.5
Q ss_pred hHHHHHHHH----HhCCCcccChHHHHHHHHHH-H---HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhc
Q 030559 11 DAKIVKSLL----KSMGVEEYEPRVIHQFLEVW-Y---RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVN 76 (175)
Q Consensus 11 Da~~I~~IL----ks~Gv~~yep~Vv~qLlEfa-y---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 76 (175)
+..-+..+| +..|+ .++++++..+..++ . |++..++..|..+|...|+..|+.+||+.|+..-++
T Consensus 367 ~~~e~~~iL~~~~~~~~~-~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d 439 (456)
T 2c9o_A 367 TPQEMKQIIKIRAQTEGI-NISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYD 439 (456)
T ss_dssp CHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcC
Confidence 334444444 44576 49999999999998 4 899999999999999999999999999999877443
No 49
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=92.16 E-value=0.8 Score=34.10 Aligned_cols=63 Identities=13% Similarity=0.294 Sum_probs=50.9
Q ss_pred CCCCChhHHHHHHHHHhCCCcccChHHHHHHHHHHHHH---HHHHHHHHHHHHhHhCCCCCCHHHHH
Q 030559 5 DEDLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRY---VVDVLTDAQVYSEHAGKTTIDCDDIK 68 (175)
Q Consensus 5 ~~~~PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfayrY---t~~VL~DA~~yA~HAgR~tI~~eDVr 68 (175)
.+.+.=.+.-|.+-|..+||+ +++.|+..++|.|.+| +.++..+=..|+-+.+...++.+-+.
T Consensus 21 ~~~~~Vsae~L~eEfdefGi~-~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~ 86 (101)
T 2keb_A 21 PGSMSASAQQLAEELQIFGLD-CEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILN 86 (101)
T ss_dssp ---CCCCHHHHHHHHHHHTCB-CCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHH
T ss_pred CchhhccHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 345667788999999999995 9999999999999999 56777888889888887777776543
No 50
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=92.06 E-value=1 Score=32.35 Aligned_cols=60 Identities=13% Similarity=0.280 Sum_probs=51.2
Q ss_pred CCChhHHHHHHHHHhCCC----cccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHH
Q 030559 7 DLPRDAKIVKSLLKSMGV----EEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKL 69 (175)
Q Consensus 7 ~~PrDa~~I~~ILks~Gv----~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrL 69 (175)
.+|. .+|.+||+ +.- ++.+.++...+.+|+.-++.+-...|...|+--|...|+.+|++-
T Consensus 12 ~i~~--~li~ril~-~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEk 75 (84)
T 4dra_E 12 GFRK--ELVSRLLH-LHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEK 75 (84)
T ss_dssp CCCH--HHHHHHHH-TTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred CCCH--HHHHHHHH-HHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 4554 47899998 433 589999999999999999999999999988877888999999864
No 51
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=91.92 E-value=0.93 Score=34.58 Aligned_cols=62 Identities=18% Similarity=0.305 Sum_probs=48.8
Q ss_pred HHHHHHHHHhCC----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCC---CCC---HHHHHHHHHH
Q 030559 12 AKIVKSLLKSMG----VEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKT---TID---CDDIKLAVQS 73 (175)
Q Consensus 12 a~~I~~ILks~G----v~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~---tI~---~eDVrLAI~~ 73 (175)
.|+|..|..+.. --+|+..++..|-|-++.|...+++|+...|-||-|. .|+ .+.++-+++.
T Consensus 8 ~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~ 79 (121)
T 2ly8_A 8 ARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKS 79 (121)
T ss_dssp HHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHHH
Confidence 578888877653 3589999999999999999999999999999999654 444 2455555544
No 52
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.99 E-value=1.3 Score=40.23 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=44.8
Q ss_pred CcccChHHHHHHHHHHH-------------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 24 VEEYEPRVIHQFLEVWY-------------RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 24 v~~yep~Vv~qLlEfay-------------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
...++++++..|++++. |...+++..|..+|...|+..|+.+||+.|++.
T Consensus 312 ~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 312 IPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp SCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 35799999999999885 677789999999999999999999999999965
No 53
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.53 E-value=1.6 Score=35.50 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=53.1
Q ss_pred cccChHHHHHHHHHHH------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhcc----ccCCCC--cHHHHHHHH
Q 030559 25 EEYEPRVIHQFLEVWY------RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNS----SFSQPP--AREVLLELA 92 (175)
Q Consensus 25 ~~yep~Vv~qLlEfay------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~----~f~~pp--pre~LlelA 92 (175)
..++++++..+.+++. |++..++..|..+|...|+..|+.+||+-|+...... .+.+.+ .+.+|+.++
T Consensus 221 ~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~~l~a~~ 300 (387)
T 2v1u_A 221 GVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIM 300 (387)
T ss_dssp TTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHH
Confidence 3689999999999998 8888999999999988899999999999998764322 122333 455666666
Q ss_pred H
Q 030559 93 K 93 (175)
Q Consensus 93 ~ 93 (175)
.
T Consensus 301 ~ 301 (387)
T 2v1u_A 301 M 301 (387)
T ss_dssp H
T ss_pred H
Confidence 4
No 54
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=89.33 E-value=3 Score=34.74 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=57.3
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHHHH---HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhccccCCCCc--HHHH
Q 030559 14 IVKSLLKSMGVEEYEPRVIHQFLEVWY---RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSSFSQPPA--REVL 88 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEfay---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f~~ppp--re~L 88 (175)
++.++.+..|++ ++++++..|.+.+. |.+..+|..+..||...|+..|+.++|+.|+.. +...-.+-+. +..|
T Consensus 188 iL~~~~~~~~~~-~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~-~~~~~~~l~~~~~~~l 265 (334)
T 1in4_A 188 IIKRAASLMDVE-IEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEV-LNIDDEGLDEFDRKIL 265 (334)
T ss_dssp HHHHHHHHTTCC-BCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH-HTCCTTCCCHHHHHHH
T ss_pred HHHHHHHHcCCC-cCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH-hCCCcCCCCHHHHHHH
Confidence 444445566874 99999888887754 677888999999999889999999999999986 3333233333 3456
Q ss_pred HHHHHhh
Q 030559 89 LELAKNR 95 (175)
Q Consensus 89 lelA~e~ 95 (175)
..++...
T Consensus 266 ~~~~~~~ 272 (334)
T 1in4_A 266 KTIIEIY 272 (334)
T ss_dssp HHHHHHS
T ss_pred HHHHHHh
Confidence 6666643
No 55
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.91 E-value=0.99 Score=33.21 Aligned_cols=57 Identities=12% Similarity=0.084 Sum_probs=38.4
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 030559 13 KIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQ 72 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~ 72 (175)
.++..+++..|+. ++++++..|.+.+......++.-....+..+ +.|+.+||+.|+.
T Consensus 168 ~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 168 KRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 4555666667874 8999999988877644444333333333333 6899999999885
No 56
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=86.43 E-value=0.92 Score=37.56 Aligned_cols=63 Identities=10% Similarity=0.070 Sum_probs=46.7
Q ss_pred HHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030559 12 AKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKV 75 (175)
Q Consensus 12 a~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
.++|..+++..|+ .++++++..|++.+.-=...++.+...++-+++.+.|+.+||+-.+....
T Consensus 148 ~~~l~~~~~~~g~-~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~ 210 (343)
T 1jr3_D 148 PRWVAARAKQLNL-ELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAA 210 (343)
T ss_dssp HHHHHHHHHHTTC-EECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhh
Confidence 3688999999999 59999999999987754555555544455445566899999987765533
No 57
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.01 E-value=5 Score=32.40 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=42.7
Q ss_pred cccChHHHHHHHHHHH------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030559 25 EEYEPRVIHQFLEVWY------RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSK 74 (175)
Q Consensus 25 ~~yep~Vv~qLlEfay------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
..+++.++..+.+++. |++.+++..|..+|...|+..|+.+||+.|+...
T Consensus 217 ~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 217 GVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp SCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 4689999999999887 5677888888888888889999999999988763
No 58
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=84.77 E-value=2 Score=31.79 Aligned_cols=54 Identities=13% Similarity=0.233 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHH---HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 030559 13 KIVKSLLKSMGVEEYEPRVIHQFLEVWY---RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAV 71 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfay---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI 71 (175)
.++...++..|+ .++++++..|.+.+. |++..++..|..+ +++.|+.+||+-|+
T Consensus 192 ~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 192 HQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 456667777787 589999988888875 4455555555433 34589999999875
No 59
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.82 E-value=4.2 Score=33.29 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=40.8
Q ss_pred cccChHHHHHHHHHHH------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030559 25 EEYEPRVIHQFLEVWY------RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKV 75 (175)
Q Consensus 25 ~~yep~Vv~qLlEfay------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
..++++++..+.+++. |++.+++..|..+|. |...|+.+||+.|+....
T Consensus 217 ~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 217 GTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp TSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 3689999999999887 567788888888887 778999999999987643
No 60
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.29 E-value=1 Score=36.64 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHHHH---HHHHHHHHHHHHhHhCCC-CCCHHHHHHHHH
Q 030559 13 KIVKSLLKSMGVEEYEPRVIHQFLEVWYRY---VVDVLTDAQVYSEHAGKT-TIDCDDIKLAVQ 72 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfayrY---t~~VL~DA~~yA~HAgR~-tI~~eDVrLAI~ 72 (175)
.++..+++..|+ .++++++..|.+++... +..+++.+..++...|+. .|+.+||+-++.
T Consensus 199 ~~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 199 DRLRFISEQENV-KCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHHTTTC-CCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 445556666787 49999999999987644 444555555554333323 899999998765
No 61
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=83.19 E-value=7 Score=31.84 Aligned_cols=68 Identities=13% Similarity=0.275 Sum_probs=53.5
Q ss_pred ccChHHHHHHHHHH------------HHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhcccc----C--CCCcHHH
Q 030559 26 EYEPRVIHQFLEVW------------YRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSSF----S--QPPAREV 87 (175)
Q Consensus 26 ~yep~Vv~qLlEfa------------yrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f----~--~pppre~ 87 (175)
.++++++..+.+.+ -|++..++..|..+|...|+..|+.+||..|+..-....+ . ++..+.+
T Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~ 293 (389)
T 1fnn_A 214 SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLF 293 (389)
T ss_dssp SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHH
Confidence 68999999999999 4888999999999998889999999999999876433222 1 1345677
Q ss_pred HHHHHH
Q 030559 88 LLELAK 93 (175)
Q Consensus 88 LlelA~ 93 (175)
|..++.
T Consensus 294 L~~l~~ 299 (389)
T 1fnn_A 294 LLAIVR 299 (389)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777775
No 62
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=83.04 E-value=2.8 Score=41.20 Aligned_cols=62 Identities=21% Similarity=0.192 Sum_probs=55.5
Q ss_pred HHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 12 AKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 12 a~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
+--|+++|+..-+.+++..+...|.-.++-.+.+||+-|-.+|...++..|+..+|.+|+..
T Consensus 107 v~~~~~~l~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 107 VEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 44588888555557999999999999999999999999999999999999999999999976
No 63
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=82.68 E-value=1.8 Score=30.53 Aligned_cols=43 Identities=12% Similarity=0.202 Sum_probs=36.0
Q ss_pred HHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 030559 15 VKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHA 57 (175)
Q Consensus 15 I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HA 57 (175)
|..|.+..|+++.+++|+..+---++.....+++.-...|.|-
T Consensus 12 i~~I~~k~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~R 54 (75)
T 1h3o_A 12 ILEIGKKHGITELHPDVVSYVSHATQQRLQNLVEKISETAQQK 54 (75)
T ss_dssp HHHHHHTTTCCEECTTHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHhcCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 5678899999999999999999999999999999999999985
No 64
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=82.68 E-value=8.4 Score=31.28 Aligned_cols=80 Identities=11% Similarity=0.056 Sum_probs=58.4
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHH---HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhccccCCCC--cHHH
Q 030559 13 KIVKSLLKSMGVEEYEPRVIHQFLEVWY---RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSSFSQPP--AREV 87 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfay---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f~~pp--pre~ 87 (175)
.++...++..|+ .+++.+...|...+. |.+..++..|..++...+...|+.++++-++.. .......-. .+.+
T Consensus 191 ~il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~-~~~~~~~l~~~e~~~ 268 (338)
T 3pfi_A 191 LILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNS-LGVNELGFDAMDLRY 268 (338)
T ss_dssp HHHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH-HTCCTTCCCHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH-hCCcccCCCHHHHHH
Confidence 355666777786 599999999998653 677888888888999888999999999999876 332222222 2457
Q ss_pred HHHHHHh
Q 030559 88 LLELAKN 94 (175)
Q Consensus 88 LlelA~e 94 (175)
+..++..
T Consensus 269 l~~l~~~ 275 (338)
T 3pfi_A 269 LELLTAA 275 (338)
T ss_dssp HHHHHHS
T ss_pred HHHHHHh
Confidence 7777765
No 65
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=79.69 E-value=13 Score=30.46 Aligned_cols=68 Identities=21% Similarity=0.258 Sum_probs=50.6
Q ss_pred ccChHHHHHHHHHHH---------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh-----ccccCCCCc--HHHHH
Q 030559 26 EYEPRVIHQFLEVWY---------RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKV-----NSSFSQPPA--REVLL 89 (175)
Q Consensus 26 ~yep~Vv~qLlEfay---------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~-----~~~f~~ppp--re~Ll 89 (175)
.++++++..+.+.+. +|+..++..|...|...++..|+.++|+.|+.... ...+..-|+ +.+|.
T Consensus 236 ~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~ 315 (412)
T 1w5s_A 236 VWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELIILR 315 (412)
T ss_dssp SCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCHHHHHHHH
Confidence 488999999999888 68889999888888888889999999998886532 223333333 55666
Q ss_pred HHHH
Q 030559 90 ELAK 93 (175)
Q Consensus 90 elA~ 93 (175)
.+|.
T Consensus 316 aia~ 319 (412)
T 1w5s_A 316 LIAE 319 (412)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 66
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=78.64 E-value=4.7 Score=32.35 Aligned_cols=83 Identities=14% Similarity=0.063 Sum_probs=57.2
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHH---HHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhccccCCCC--cHHH
Q 030559 13 KIVKSLLKSMGVEEYEPRVIHQFLEVW---YRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSSFSQPP--AREV 87 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfa---yrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f~~pp--pre~ 87 (175)
.++...++..|+ .++++++..|.+++ -|.+..++..+..+|...+...|+.+|++.++..- ......-. .++.
T Consensus 175 ~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~e~~~ 252 (324)
T 1hqc_A 175 QGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL-GLDELGLEKRDREI 252 (324)
T ss_dssp HHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHH-TCCTTCCCHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-cccccCCCHHHHHH
Confidence 455666667787 59999999999885 46677777777777777788899999999888652 22222222 3456
Q ss_pred HHHHHHhhcC
Q 030559 88 LLELAKNRNK 97 (175)
Q Consensus 88 LlelA~e~N~ 97 (175)
+..++...+-
T Consensus 253 i~~~~~~~~g 262 (324)
T 1hqc_A 253 LEVLILRFGG 262 (324)
T ss_dssp HHHHHHHSCS
T ss_pred HHHHHHHhcC
Confidence 6666665443
No 67
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=78.26 E-value=8.6 Score=27.14 Aligned_cols=62 Identities=13% Similarity=0.212 Sum_probs=50.5
Q ss_pred CCCChhHHHHHHHHHhC---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHH
Q 030559 6 EDLPRDAKIVKSLLKSM---GVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKL 69 (175)
Q Consensus 6 ~~~PrDa~~I~~ILks~---Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrL 69 (175)
..+|.+ +|++||+.. --++.+++++..+.+|+.-++.+-+..|..-|+--|...|+.+|+.-
T Consensus 7 ~~~~~~--lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEk 71 (81)
T 3b0b_C 7 GGFRKE--TVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEK 71 (81)
T ss_dssp CCCCHH--HHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCCCHH--HHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHH
Confidence 345555 577777764 23689999999999999999999999998888777888999999964
No 68
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=77.78 E-value=4.1 Score=30.06 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=44.2
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHHHH------------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 14 IVKSLLKSMGVEEYEPRVIHQFLEVWY------------RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEfay------------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
++.+||+++|+. -+.+...+.++.. .-+..+|..|..+|...|...|+.+.+-+|+-.
T Consensus 47 ~~~~iL~~~gvd--~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~ 116 (145)
T 3fes_A 47 IAAKVLSKVGFT--EAYLEGKIVDMEGKGEEISEDIVLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQ 116 (145)
T ss_dssp HHHHHHHHHTCC--HHHHHHHHHHHHCCCSCCCSCCEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hHHHHHHHcCCC--HHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHh
Confidence 567899999985 1334444444432 346789999999999999999999999999954
No 69
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=76.38 E-value=4.5 Score=28.69 Aligned_cols=54 Identities=15% Similarity=0.334 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhCCCcccChHHHHHHHHHHHHH---HHHHHHHHHHHHhHhCCCCCCHH
Q 030559 11 DAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRY---VVDVLTDAQVYSEHAGKTTIDCD 65 (175)
Q Consensus 11 Da~~I~~ILks~Gv~~yep~Vv~qLlEfayrY---t~~VL~DA~~yA~HAgR~tI~~e 65 (175)
.++-+..-|..+|++ +++.|+..|+|.+-.| ..++..+-.+|+.-.|+..++.+
T Consensus 4 s~e~l~~el~~Fgi~-c~d~v~eKl~ElC~~y~~~~~e~V~ew~Afs~s~~~~~lt~~ 60 (78)
T 4e2i_2 4 SAQQLAEELQIFGLD-CEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSE 60 (78)
T ss_dssp CHHHHHHHHHHTTCC-CCHHHHHHHHTHHHHSCCCHHHHHHHHTTHHHHTTCCCCCTT
T ss_pred CHHHHHHHHHHcCCC-CcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHH
Confidence 467788899999994 9999999999999988 57788888888765577777654
No 70
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=73.98 E-value=20 Score=25.58 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=43.4
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhC-CCCCCHHHHHHHHHH
Q 030559 25 EEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAG-KTTIDCDDIKLAVQS 73 (175)
Q Consensus 25 ~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAg-R~tI~~eDVrLAI~~ 73 (175)
..+++.|+..|--++.-|+.+|.+.|+...+.-| ...|...-|+.|.+.
T Consensus 32 ~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rr 81 (89)
T 1bh9_B 32 TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRR 81 (89)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Confidence 4689999999999999999999999999988765 457999999999865
No 71
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=73.85 E-value=7.3 Score=28.63 Aligned_cols=58 Identities=19% Similarity=0.150 Sum_probs=44.3
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHHHH-------------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 14 IVKSLLKSMGVEEYEPRVIHQFLEVWY-------------RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEfay-------------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
++.+||+++|+. -+.+...+.++.. ..+..+|..|..+|...|...|+.+.+-+|+-.
T Consensus 46 ~~~~iL~~~gv~--~~~l~~~l~~~l~~~~~~~~~~~~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~ 116 (146)
T 3fh2_A 46 VAAKALESMGIS--LDAVRQEVEEIIGQGSQPTTGHIPFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIR 116 (146)
T ss_dssp HHHHHHHHTTCC--HHHHHHHHHHHHCCCSCCCCSCCCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hHHHHHHHcCCC--HHHHHHHHHHHhccCCCCCcCCCcCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHh
Confidence 567899999985 1334444444432 356789999999999999999999999999954
No 72
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=73.48 E-value=2.4 Score=32.88 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCcccChH-HHHHHHHHH----HHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030559 13 KIVKSLLKSMGVEEYEPR-VIHQFLEVW----YRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSK 74 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~-Vv~qLlEfa----yrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
.++...++..|.. .+.. ....|.... -+....++..|..+|...|+..|+.+|++.|++..
T Consensus 184 ~il~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 184 EIFEQHLKSLKLT-QSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHTTCC-BTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHhCCCC-cchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 4666777888875 3333 334555433 35666788888888888888999999999999763
No 73
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=72.28 E-value=16 Score=26.24 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=41.9
Q ss_pred HHHHHHhCCCcccChHHHHHHHHHHHHH------------------HHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 15 VKSLLKSMGVEEYEPRVIHQFLEVWYRY------------------VVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 15 I~~ILks~Gv~~yep~Vv~qLlEfayrY------------------t~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
+..||+++|+. -+.+...+-++..++ +..+|..|..+|...|...|+.+.+-+|+-.
T Consensus 40 ~~~iL~~~g~~--~~~l~~~l~~~l~~~~p~~~~~~~~~~~~~s~~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~ 114 (143)
T 1k6k_A 40 AREALEACSVD--LVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFS 114 (143)
T ss_dssp HHHHHHHTTCC--HHHHHHHHHHHHHHHSCBCCSSCSCCSCEECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTT
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 67899999985 223444444443332 4468999999999999999999999999943
No 74
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=71.19 E-value=7.4 Score=30.73 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=40.8
Q ss_pred HHHHHHHhCCCcccChHHHHHHHH----HHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030559 14 IVKSLLKSMGVEEYEPRVIHQFLE----VWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKV 75 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlE----fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
++...++..++. .+.....|.. +.-+-...++..|..+|-..++..|+.+|++-|++.-.
T Consensus 196 il~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 196 ILKIHTRKMNLA--EDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIM 259 (285)
T ss_dssp HHHHHHTTSCBC--TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCC--CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHH
Confidence 444455555542 1212344443 34456778899999999999999999999999998643
No 75
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=71.08 E-value=4.3 Score=26.96 Aligned_cols=60 Identities=20% Similarity=0.275 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCC-cccChHHHHHHHH----HHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030559 13 KIVKSLLKSMGV-EEYEPRVIHQFLE----VWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKV 75 (175)
Q Consensus 13 ~~I~~ILks~Gv-~~yep~Vv~qLlE----fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
.++...|+.+.+ .+++ ...|.+ |.-.=...+..+|..+|-..++..|+.+|+.-|++.-.
T Consensus 10 ~Il~~~l~~~~~~~~~d---l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 10 DILKIHSRKMNLTRGIN---LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp HHHHHHHTTSEECTTCC---HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCccC---HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 455566666654 2333 334444 33344678889999999889999999999999997643
No 76
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=66.56 E-value=25 Score=25.34 Aligned_cols=58 Identities=12% Similarity=0.182 Sum_probs=42.6
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHHHH------------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 14 IVKSLLKSMGVEEYEPRVIHQFLEVWY------------RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEfay------------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
++..||+.+|+. -+.+...+-++.. .-+..+|..|..+|...|...|+.+.+-+|+-.
T Consensus 45 ~~~~iL~~~g~~--~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~ 114 (150)
T 2y1q_A 45 IAAKALQALGLG--SEKIQKEVESLIGRAQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIR 114 (150)
T ss_dssp HHHHHHHHTTCC--HHHHHHHHHHHHCCC-----CCEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHhccCCcccccCCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHh
Confidence 567899999985 1233333333321 346778999999999999999999999999954
No 77
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=65.26 E-value=8.4 Score=31.34 Aligned_cols=54 Identities=11% Similarity=0.195 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHH---HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 030559 13 KIVKSLLKSMGVEEYEPRVIHQFLEVWY---RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAV 71 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfay---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI 71 (175)
.++..+++..|+ .++++++..|.+.+. |.+..+++.+..|+ ...|+.+||+-++
T Consensus 185 ~~l~~~~~~~~~-~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 185 HQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp HHHHHHHHHHTC-CBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 456667777888 489999988888865 44555555554443 3579999987664
No 78
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=64.80 E-value=7.5 Score=34.33 Aligned_cols=61 Identities=10% Similarity=0.138 Sum_probs=45.3
Q ss_pred HHHHHHHHh-------CCCcccChHHHHHHHHHHH---HHHHHHHHHHHHHHhHh--CCCCCCHHHHHHHHHHh
Q 030559 13 KIVKSLLKS-------MGVEEYEPRVIHQFLEVWY---RYVVDVLTDAQVYSEHA--GKTTIDCDDIKLAVQSK 74 (175)
Q Consensus 13 ~~I~~ILks-------~Gv~~yep~Vv~qLlEfay---rYt~~VL~DA~~yA~HA--gR~tI~~eDVrLAI~~r 74 (175)
.++..+++. .++ .++++++..|++++. |.+..+|+.|..++... |+..|+.+||+-+++.+
T Consensus 172 ~il~~~l~~~~~~~~~~~~-~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 172 QVLTQAMEDKTRGYGGQDI-VLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHHCTTTSSTTSSE-ECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhhhccccC-cCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 456666665 333 589999999999986 66667777777776533 56789999999998764
No 79
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=63.51 E-value=18 Score=24.11 Aligned_cols=41 Identities=12% Similarity=0.221 Sum_probs=29.7
Q ss_pred CCChhHHHHHHHHHhCCCcccChHHHHHHHHHH-------HHHHHHHHHHH
Q 030559 7 DLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVW-------YRYVVDVLTDA 50 (175)
Q Consensus 7 ~~PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfa-------yrYt~~VL~DA 50 (175)
.-|.+.+.|...+...| |+++++..+++.| .+|+..||.+=
T Consensus 18 ls~~e~~~i~~w~~~~~---~~~elI~~A~~~a~~~~~~s~~Yi~~Il~~W 65 (78)
T 2zc2_A 18 LSPFELEDLQKTVSDDK---TDPDLVRSALREAVFNGKTNWNYIQAILRNW 65 (78)
T ss_dssp CCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45667777777777764 7788888888888 46777776553
No 80
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=61.52 E-value=35 Score=31.36 Aligned_cols=62 Identities=23% Similarity=0.395 Sum_probs=45.9
Q ss_pred HHHHHHHHh----CCCcccChHHHHHHHHHHHHH---------HHHHHHHHHHHHhH----hCCCCCCHHHHHHHHHHhh
Q 030559 13 KIVKSLLKS----MGVEEYEPRVIHQFLEVWYRY---------VVDVLTDAQVYSEH----AGKTTIDCDDIKLAVQSKV 75 (175)
Q Consensus 13 ~~I~~ILks----~Gv~~yep~Vv~qLlEfayrY---------t~~VL~DA~~yA~H----AgR~tI~~eDVrLAI~~r~ 75 (175)
.++..+++. .++ .+++.++..+.+++++| +.+++.+|...+.. .++..|+.+||.-++....
T Consensus 356 ~il~~l~~~~~~~~~v-~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 356 QIINGLKPKYEAHHDV-RYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 344444444 465 58999999999999997 55677777766665 3567899999999987643
No 81
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=60.14 E-value=11 Score=29.49 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=38.9
Q ss_pred hHHHHHHHHHhC--CCcccChHH-HHHHHHHHH----HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 030559 11 DAKIVKSLLKSM--GVEEYEPRV-IHQFLEVWY----RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAV 71 (175)
Q Consensus 11 Da~~I~~ILks~--Gv~~yep~V-v~qLlEfay----rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI 71 (175)
|......||+.+ +. ..++++ ...|.+.+. +-...++.+|..+|...|+..|+.+|++-|+
T Consensus 187 ~~~~r~~il~~~~~~~-~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 187 DVKGREQILRIHARGK-PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp CHHHHHHHHHHHHTTS-CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCC-CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 444344454432 22 234444 444444443 5567889999999988899999999998875
No 82
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=59.50 E-value=9.6 Score=34.44 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=37.0
Q ss_pred ccChHHHHHHHHHHH-------------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 030559 26 EYEPRVIHQFLEVWY-------------RYVVDVLTDAQVYSEHAGKTTIDCDDIKLA 70 (175)
Q Consensus 26 ~yep~Vv~qLlEfay-------------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLA 70 (175)
.+++.+...+.++.. |....++.-|..+|...||..|+.+||++|
T Consensus 225 ~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~~a 282 (500)
T 3nbx_X 225 TLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILL 282 (500)
T ss_dssp BCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGGGG
T ss_pred cCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHHHH
Confidence 477888877777763 556679999999999999999999999944
No 83
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=59.47 E-value=13 Score=32.51 Aligned_cols=60 Identities=22% Similarity=0.278 Sum_probs=45.0
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHHHH---HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030559 14 IVKSLLKSMGVEEYEPRVIHQFLEVWY---RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKV 75 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEfay---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
++...++..|+ .++++++..|...+. |.+..+|..+..+|...|+ .|+.++++-|++...
T Consensus 271 iL~~~~~~~~~-~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 271 IARKMLEIEHG-ELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHHHTC-CCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTTT
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHh
Confidence 34444555577 489999888887764 6677788888888887775 699999999887644
No 84
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=59.14 E-value=8.9 Score=35.14 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030559 41 RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSK 74 (175)
Q Consensus 41 rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
|....++.-|..+|...|+..|+.+||+.|++..
T Consensus 554 R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 554 RQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp TTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 3456788889999999999999999999999763
No 85
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=57.25 E-value=15 Score=29.00 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 030559 13 KIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAV 71 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI 71 (175)
.++..+++..|+. ++++++..|.+.+......++.....++.. ...|+.+||+-++
T Consensus 168 ~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~ 223 (319)
T 2chq_A 168 KRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQIT 223 (319)
T ss_dssp HHHHHHHHTTCCC-BCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHT
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHH
Confidence 4566677778884 999999999988765555544444444432 3468888876554
No 86
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=57.05 E-value=25 Score=27.19 Aligned_cols=57 Identities=25% Similarity=0.319 Sum_probs=42.8
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHHHH-------------HHHHHHHHHHHHHHh-HhCCCCCCHHHHHHHHHH
Q 030559 14 IVKSLLKSMGVEEYEPRVIHQFLEVWY-------------RYVVDVLTDAQVYSE-HAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEfay-------------rYt~~VL~DA~~yA~-HAgR~tI~~eDVrLAI~~ 73 (175)
++..||+++||.. +.+...+. +.. .-+..+|+.|..+|. -.|...|+.+.|-+|+-.
T Consensus 64 ~a~~iL~~~gvd~--~~l~~~l~-~l~~~p~~~~~~~~~S~~l~~vL~~A~~~A~l~~gd~~I~teHLLLALl~ 134 (171)
T 3zri_A 64 DVRLVLKQAGLEV--DQVKQAIA-STYSREQVLDTYPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALT 134 (171)
T ss_dssp HHHHHHHHTTCCH--HHHHHHHH-HHSCCCCCCSSCCEECHHHHHHHHHHHHHHHTTTCCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCH--HHHHHHHH-HHhcCCCCCCCCCCcCHHHHHHHHHHHHHHHHHcCCCEEcHHHHHHHHHh
Confidence 6788999999851 23333333 332 245789999999999 999999999999999843
No 87
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=56.01 E-value=11 Score=29.76 Aligned_cols=53 Identities=15% Similarity=0.242 Sum_probs=45.0
Q ss_pred HHHHHHHhC-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHH
Q 030559 14 IVKSLLKSM-GVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDI 67 (175)
Q Consensus 14 ~I~~ILks~-Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDV 67 (175)
-+.++++.. |+ ++.-.=...+.||..+-..++|.-|..-|+..||..|..-|+
T Consensus 7 ~~e~lFR~aa~L-dvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 7 EFERLFRQAAGL-DVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp HHHHHHHHHHCC-CCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred HHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 356777776 55 677888899999999999999999999999999998876664
No 88
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=55.54 E-value=15 Score=28.57 Aligned_cols=36 Identities=8% Similarity=0.160 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030559 39 WYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSK 74 (175)
Q Consensus 39 ayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
.-|-...++..|..+|...|+..|+.+|++.|+...
T Consensus 217 ~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 217 SGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 445677889999999999999999999999999764
No 89
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=55.24 E-value=18 Score=28.80 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhC--CCcccChHH-HHHHHHHHH----HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 030559 11 DAKIVKSLLKSM--GVEEYEPRV-IHQFLEVWY----RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAV 71 (175)
Q Consensus 11 Da~~I~~ILks~--Gv~~yep~V-v~qLlEfay----rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI 71 (175)
|..-...||+.+ +. .+++++ ...|.+.+. +-...++..|..+|...|+..|+.+|++-|+
T Consensus 211 ~~~~r~~il~~~~~~~-~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 211 DVKGREQILRIHARGK-PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp CHHHHHHHHHHHHTTS-CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred CHHHHHHHHHHHHccC-CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 444444455433 22 244444 344444333 4566789999999988899999999998875
No 90
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=51.59 E-value=48 Score=22.46 Aligned_cols=46 Identities=11% Similarity=0.137 Sum_probs=34.5
Q ss_pred HHHHHhCCCcccChHHHHHHHHHHHHH---------HHHHHHHHHHHHhHhCCCC
Q 030559 16 KSLLKSMGVEEYEPRVIHQFLEVWYRY---------VVDVLTDAQVYSEHAGKTT 61 (175)
Q Consensus 16 ~~ILks~Gv~~yep~Vv~qLlEfayrY---------t~~VL~DA~~yA~HAgR~t 61 (175)
..++...|+--.+|-....|.+++..| ..+++..|..+|-.+|+..
T Consensus 5 ~~~~e~~g~g~ls~~e~e~i~~w~~~~~~~~~~~~~~~elI~~A~~~av~~~~~~ 59 (83)
T 2i5u_A 5 RSIWENNGFGLMSSKTMTDFDYWISDFEKIGASQKEAEQLIVKAIEIAIDANARN 59 (83)
T ss_dssp HHHHHTTTSCSCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHcCCCC
Confidence 345555555467888888888888877 7889999999887777644
No 91
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=50.38 E-value=38 Score=26.57 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 030559 13 KIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQ 72 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~ 72 (175)
.++..+++..|+. ++++++..|.+.+......++......+... ..|+.++|+-++.
T Consensus 173 ~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~--~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 173 KRLLQIIKLEDVK-YTNDGLEAIIFTAEGDMRQAINNLQSTVAGH--GLVNADNVFKIVD 229 (323)
T ss_dssp HHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--SSBCHHHHHHHHT
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCcCHHHHHHHHC
Confidence 4555566667874 8999999999988744333333333333222 4699999887764
No 92
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=47.77 E-value=16 Score=33.71 Aligned_cols=48 Identities=13% Similarity=0.121 Sum_probs=37.5
Q ss_pred ccChHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 26 EYEPRVIHQFLEVWY---------------------RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 26 ~yep~Vv~qLlEfay---------------------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
.+++.+...+.++.. |....++.-|+.+|...||..|+.+||+.||..
T Consensus 414 ~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L 482 (506)
T 3f8t_A 414 ELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAEL 482 (506)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHH
Confidence 577777777776532 223357778889999999999999999999986
No 93
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=47.38 E-value=35 Score=26.73 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=36.1
Q ss_pred hCCCc-ccChHHHHHHHHHHH-----------HHHHHHHHHHHHHHh--Hh---CCC-CCCHHHHHHHHHH
Q 030559 21 SMGVE-EYEPRVIHQFLEVWY-----------RYVVDVLTDAQVYSE--HA---GKT-TIDCDDIKLAVQS 73 (175)
Q Consensus 21 s~Gv~-~yep~Vv~qLlEfay-----------rYt~~VL~DA~~yA~--HA---gR~-tI~~eDVrLAI~~ 73 (175)
..|.. .++++++..|.++++ |.+..++..+...+. .+ |+. .|+.+||+-|++.
T Consensus 228 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 228 TEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred hcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 35653 699999999999985 445666666553321 22 222 4999999999865
No 94
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=46.60 E-value=63 Score=25.46 Aligned_cols=55 Identities=13% Similarity=0.217 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHH-----------HHHHHHHHHHHHHHHhHh----CCCCCCHHHHH
Q 030559 13 KIVKSLLKSMGVEEYEPRVIHQFLEVW-----------YRYVVDVLTDAQVYSEHA----GKTTIDCDDIK 68 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfa-----------yrYt~~VL~DA~~yA~HA----gR~tI~~eDVr 68 (175)
.++..+++..|+ .+++++...|.+++ -|.+..+++.|...+... +...|+.+|+.
T Consensus 211 ~il~~~l~~~~~-~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 211 EIAGHMLDDQNY-QMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHTTC-EECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 456677788887 59999999999984 577788888887543221 34566666655
No 95
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=46.47 E-value=26 Score=27.67 Aligned_cols=53 Identities=11% Similarity=0.100 Sum_probs=30.9
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHH
Q 030559 13 KIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIK 68 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVr 68 (175)
.++..+++..|+. ++++++..|.+.+......++......+..+ ..|+.++|.
T Consensus 176 ~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~i~~~~v~ 228 (327)
T 1iqp_A 176 KRLRYIAENEGLE-LTEEGLQAILYIAEGDMRRAINILQAAAALD--KKITDENVF 228 (327)
T ss_dssp HHHHHHHHTTTCE-ECHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SEECHHHHH
T ss_pred HHHHHHHHhcCCC-CCHHHHHHHHHHCCCCHHHHHHHHHHHHhcC--CCCCHHHHH
Confidence 3456666677884 9999999998887544444333333333222 245555554
No 96
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=45.15 E-value=39 Score=22.93 Aligned_cols=59 Identities=22% Similarity=0.184 Sum_probs=42.0
Q ss_pred HHHHHHHHhCCCc-ccChHHHHHHHHHHHHH----HHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030559 13 KIVKSLLKSMGVE-EYEPRVIHQFLEVWYRY----VVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSK 74 (175)
Q Consensus 13 ~~I~~ILks~Gv~-~yep~Vv~qLlEfayrY----t~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
.++...++.+... +++ ...|.+.++-| ...+..+|..+|-..++..|+.+|+.-|++.-
T Consensus 8 ~Il~~~~~~~~~~~dvd---l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v 71 (88)
T 3vlf_B 8 NIFRIHSKSMSVERGIR---WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 71 (88)
T ss_dssp HHHHHHHTTSCBCSCCC---HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCccC---HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 4566667776543 232 34455544444 67788889889988899999999999999763
No 97
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=42.84 E-value=42 Score=28.13 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHh----Hh------------CCCCCCHHHHHHHHHH
Q 030559 13 KIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSE----HA------------GKTTIDCDDIKLAVQS 73 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~----HA------------gR~tI~~eDVrLAI~~ 73 (175)
.++..+++..|. .+++.++..|.+.+..|+..-+.....+|- .. +...|+.+|+..|++.
T Consensus 289 ~il~~~~~~~~~-~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~ 364 (389)
T 3vfd_A 289 LLLKNLLCKQGS-PLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKK 364 (389)
T ss_dssp HHHHHHHTTSCC-CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHH
Confidence 345566666776 488889999998888776644444443332 11 3457999999999975
No 98
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=42.54 E-value=16 Score=29.63 Aligned_cols=94 Identities=19% Similarity=0.149 Sum_probs=55.6
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHHHHHHH---HHHHHHHHHh----HhCCCCC-CHHHHHHHHHHhhcccc-----
Q 030559 13 KIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVD---VLTDAQVYSE----HAGKTTI-DCDDIKLAVQSKVNSSF----- 79 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~---VL~DA~~yA~----HAgR~tI-~~eDVrLAI~~r~~~~f----- 79 (175)
.++...++..|+ .++++++..|...+ ..+.+ ++..+..+.. ..+...| +.++|+-+++...+...
T Consensus 173 ~il~~~~~~~~~-~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~~~~~~~~~i~s 250 (324)
T 1l8q_A 173 KIIKEKLKEFNL-ELRKEVIDYLLENT-KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVANYYAVKVEDILS 250 (324)
T ss_dssp HHHHHHHHHTTC-CCCHHHHHHHHHHC-SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHSS
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHhC-CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHHHhCCCHHHHhc
Confidence 455556666787 59999998888877 44444 3444443300 1344568 89999988876433110
Q ss_pred -C--CC--CcHHHHHHHHHhhcCCCCCCCCCCCC
Q 030559 80 -S--QP--PAREVLLELAKNRNKIPLPKSISAPG 108 (175)
Q Consensus 80 -~--~p--ppre~LlelA~e~N~~PLP~v~~~~G 108 (175)
. .+ -+|...+-+|++.-...++.|-..+|
T Consensus 251 ~~~~~~~~~~r~i~~~l~r~~~~~s~~~ig~~~g 284 (324)
T 1l8q_A 251 DKRNKRTSEARKIAMYLCRKVCSASLIEIARAFK 284 (324)
T ss_dssp CCCCSSSHHHHHHHHHHHHHHHCCCHHHHHHHSS
T ss_pred CCCCCccchHHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 0 01 35666667777666666666654443
No 99
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=41.36 E-value=19 Score=28.93 Aligned_cols=58 Identities=12% Similarity=0.212 Sum_probs=49.5
Q ss_pred ChhHHHHHHHHHhC-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHH
Q 030559 9 PRDAKIVKSLLKSM-GVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDI 67 (175)
Q Consensus 9 PrDa~~I~~ILks~-Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDV 67 (175)
+-..--+.++++.. |+ ++.-.=...+.||..+-..++|.-|..-|+..||..|..-|+
T Consensus 26 vmg~~kferlFR~aagL-DvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 26 PKGFDKLDHYFRTELDI-DLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp CTTHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred cCChHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 44556678888887 55 688888999999999999999999999999999998876664
No 100
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=40.98 E-value=9.5 Score=30.82 Aligned_cols=56 Identities=14% Similarity=0.277 Sum_probs=33.5
Q ss_pred HHHHHHHhCCCcccCh-HHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 14 IVKSLLKSMGVEEYEP-RVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep-~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
.+..+++..|+ .+++ +++..|++.+...+.+++.....++ +...|+.++|+.++..
T Consensus 180 ~l~~~~~~~~~-~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~---~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 180 RLTEICKHEGI-AIADMKVVAALVKKNFPDFRKTIGELDSYS---SKGVLDAGILSLVTND 236 (324)
T ss_dssp HHHHHHHHHTC-CBSCHHHHHHHHHHTCSCTTHHHHHHHHHG---GGTCBCC---------
T ss_pred HHHHHHHHcCC-CCCcHHHHHHHHHhCCCCHHHHHHHHHHHh---ccCCCCHHHHHHHhCC
Confidence 45556677787 4888 9999999988766666666666666 3345888888766543
No 101
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.32 E-value=41 Score=30.51 Aligned_cols=62 Identities=23% Similarity=0.166 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCCc-ccChHHHHHHHH-HHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030559 13 KIVKSLLKSMGVE-EYEPRVIHQFLE-VWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSK 74 (175)
Q Consensus 13 ~~I~~ILks~Gv~-~yep~Vv~qLlE-fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
.++...++.+.+. +++-+.+..+.+ |.-.-...|..+|..+|-..++..|+.+|+.-|++..
T Consensus 387 ~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 387 NIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 3455556666543 333222222222 4445677889999999988999999999999999753
No 102
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=38.19 E-value=34 Score=22.77 Aligned_cols=37 Identities=11% Similarity=0.132 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030559 38 VWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSK 74 (175)
Q Consensus 38 fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
|...=...+..+|...|-..++..|+.+|+..|+...
T Consensus 32 ~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 32 LSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 3334456778888888888889999999999999763
No 103
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.32 E-value=48 Score=29.88 Aligned_cols=58 Identities=14% Similarity=0.208 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCCc-ccChHHHHHHHH----HHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 13 KIVKSLLKSMGVE-EYEPRVIHQFLE----VWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 13 ~~I~~ILks~Gv~-~yep~Vv~qLlE----fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
.++...++.+.+. +++ ...|.+ |.-.-...|..+|..+|-..++..|+.+|+..|++.
T Consensus 360 ~Il~~~l~~~~l~~dvd---l~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 360 KILGIHTSKMNLSEDVN---LETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHTTSCBCSCCC---HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCcCC---HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 3455556666543 233 233333 444567788899999998889999999999999864
No 104
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=36.66 E-value=25 Score=20.48 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=11.7
Q ss_pred CCCcccChHHHHHHHHHHHH
Q 030559 22 MGVEEYEPRVIHQFLEVWYR 41 (175)
Q Consensus 22 ~Gv~~yep~Vv~qLlEfayr 41 (175)
.|+++|+++-+..||+-+-.
T Consensus 4 sgvtrfdekqieelldncie 23 (31)
T 4h62_V 4 SGVTRFDEKQIEELLDNCIE 23 (31)
T ss_dssp ------CHHHHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHHHH
Confidence 58999999999999987643
No 105
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.74 E-value=53 Score=29.12 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCCc-ccChHHHHHHHH----HHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030559 13 KIVKSLLKSMGVE-EYEPRVIHQFLE----VWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSK 74 (175)
Q Consensus 13 ~~I~~ILks~Gv~-~yep~Vv~qLlE----fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
.++...++.+++. +++ ...|.+ |.-.-...+..+|..+|-..++..|+.+|+..|+..-
T Consensus 326 ~Il~~~~~~~~l~~dvd---l~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v 389 (405)
T 4b4t_J 326 EILRIHSRKMNLTRGIN---LRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKV 389 (405)
T ss_dssp HHHHHHHTTSBCCSSCC---HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCccCC---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 3455556666553 333 233333 3345667888899989888899999999999999753
No 106
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=34.70 E-value=1.2e+02 Score=27.84 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=43.3
Q ss_pred HHHHHHhCCCcccChHHHHHHHHHHHH------------------HHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 15 VKSLLKSMGVEEYEPRVIHQFLEVWYR------------------YVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 15 I~~ILks~Gv~~yep~Vv~qLlEfayr------------------Yt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
+..||+.+|+. -+.+...|.++..+ -+..+|+.|..+|...|...|+.+.|-+|+-.
T Consensus 40 ~~~iL~~~gvd--~~~l~~~l~~~l~~~~p~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~~~~~I~~ehlLlall~ 114 (758)
T 1r6b_X 40 AREALEACSVD--LVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFS 114 (758)
T ss_dssp HHHHHHHTTCC--HHHHHHHHHHHHHHHSCBCCCSSSCCCCEECHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHTT
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHhccCCCCCCccccCCCCcCHHHHHHHHHHHHHHHHcCCCEeeHHHHHHHHhc
Confidence 66899999985 23444444444433 36679999999999999999999999999853
No 107
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.70 E-value=91 Score=27.58 Aligned_cols=59 Identities=14% Similarity=0.229 Sum_probs=40.8
Q ss_pred HHHHHHHhCCCc-ccChHHHHHHHH----HHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhh
Q 030559 14 IVKSLLKSMGVE-EYEPRVIHQFLE----VWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKV 75 (175)
Q Consensus 14 ~I~~ILks~Gv~-~yep~Vv~qLlE----fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 75 (175)
++..+++.+++. +++ ...|.+ |.-.-...+..+|..+|-..++..|+.+|+.-|+...+
T Consensus 352 Il~~~~~~~~l~~~~d---l~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 352 IFGTIASKMSLAPEAD---LDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 415 (428)
T ss_dssp HHHHHHHSSCBCTTCC---HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCCcccC---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhh
Confidence 555666666643 233 333333 33345678888888888888999999999999997644
No 108
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=33.50 E-value=49 Score=21.76 Aligned_cols=58 Identities=9% Similarity=0.218 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCCc-ccChHHHHHHHH----HHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 13 KIVKSLLKSMGVE-EYEPRVIHQFLE----VWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 13 ~~I~~ILks~Gv~-~yep~Vv~qLlE----fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
.++...|+.+... +++ ...|.+ |...=...+..+|...|-..++..|+.+|+.-|++.
T Consensus 8 ~Il~~~l~~~~~~~~vd---l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~ 70 (83)
T 3aji_B 8 LIFSTITSKMNLSEEVD---LEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKT 70 (83)
T ss_dssp HHHHHHHTTSCBCTTCC---THHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcccC---HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHH
Confidence 3555566666532 333 233333 333445667888888888778889999999999976
No 109
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=32.97 E-value=33 Score=30.27 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=37.4
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHHHH---HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 14 IVKSLLKSMGVEEYEPRVIHQFLEVWY---RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEfay---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
++..++...|+. ++++++..|.+.+. |.+..+|+.+ + .+++.|+.++|+-++..
T Consensus 217 ~L~~i~~~~~~~-i~~~~l~~la~~s~GdiR~~i~~L~~~---~--~~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 217 RLMTIAIREKFK-LDPNVIDRLIQTTRGDIRQVINLLSTI---S--TTTKTINHENINEISKA 273 (516)
T ss_dssp HHHHHHHHHTCC-CCTTHHHHHHHHTTTCHHHHHHHHTHH---H--HHSSCCCTTHHHHHHHH
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHHHH---H--hcCCCCchHHHHHHHHh
Confidence 445556666874 99999999988874 4455555433 2 25678999999888764
No 110
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=32.75 E-value=42 Score=27.42 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhC---CCCCCHHHHHHHH
Q 030559 13 KIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAG---KTTIDCDDIKLAV 71 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAg---R~tI~~eDVrLAI 71 (175)
+++..+++..|+ .+++.+...+.+++..-...++......+..++ +..|+.++|+.++
T Consensus 176 ~~l~~~~~~~~~-~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 176 RRIANVLVHEKL-KLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp HHHHHHHHTTTC-CBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHT
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHh
Confidence 456666666787 489999888888876444444443333343343 3468888886543
No 111
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=32.32 E-value=55 Score=23.34 Aligned_cols=57 Identities=21% Similarity=0.249 Sum_probs=40.8
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHHH---------------HHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 030559 14 IVKSLLKSMGVEEYEPRVIHQFLEVW---------------YRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQ 72 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEfa---------------yrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~ 72 (175)
++..||+++|+. -+.+...+-++. -.-+..+|..|..+|...|...|+.+.+-+|+-
T Consensus 45 ~~~~iL~~~g~~--~~~l~~~l~~~l~~~p~~~~~~~~~~~s~~~~~vl~~A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 45 SVSPLLTSAGIN--AGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp SHHHHHHHHTCC--HHHHHHHHHHHHTTSCCC-------CBCHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred hHHHHHHHcCCC--HHHHHHHHHHHHHhCCCCCCCCCCcCcCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH
Confidence 466788888884 122333333222 124567899999999999999999999999996
No 112
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=32.08 E-value=1.3e+02 Score=23.79 Aligned_cols=83 Identities=16% Similarity=0.152 Sum_probs=47.8
Q ss_pred CCChhHHHHHHHHHhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhccccCCCCcHH
Q 030559 7 DLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSSFSQPPARE 86 (175)
Q Consensus 7 ~~PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~f~~pppre 86 (175)
.+|++-.+...+.+.++ .--+....|.++...|- ..++..++.-...-.=.+|+|+-.|...+...|..|-.|+
T Consensus 21 l~pke~~ff~ll~~~a~---~v~~~a~~L~~~l~~~~---~~~~~~~~~~I~~lE~~aD~i~~~i~~~L~~~fitP~dRe 94 (227)
T 3l39_A 21 FTPKEPKFFPLLKQLSD---VLSASSVLLVESMEHDL---PTERADYYKQIKDMEREGDRLTHLIFDELSTTFITPFDRE 94 (227)
T ss_dssp CCCCCCCHHHHHHHHHH---HHHHHHHHHHHHTTCCS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCSSCHH
T ss_pred hcCCCchHHHHHHHHHH---HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCHH
Confidence 56777666665555542 23344445555443110 0111111111000011358899999999999999999999
Q ss_pred HHHHHHHhh
Q 030559 87 VLLELAKNR 95 (175)
Q Consensus 87 ~LlelA~e~ 95 (175)
.++.|+...
T Consensus 95 DI~~L~~~l 103 (227)
T 3l39_A 95 DIHDLASCM 103 (227)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 113
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=32.05 E-value=45 Score=26.33 Aligned_cols=59 Identities=14% Similarity=0.244 Sum_probs=37.7
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHHHHHHHH----HHHHHHHHHHhHh------------CCCCCCHHHHHHHHHH
Q 030559 14 IVKSLLKSMGVEEYEPRVIHQFLEVWYRYVV----DVLTDAQVYSEHA------------GKTTIDCDDIKLAVQS 73 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~----~VL~DA~~yA~HA------------gR~tI~~eDVrLAI~~ 73 (175)
++..+++..|. .+++.++..|.+.+..|+. .++..|...+-.. ....|+.+|+..|++.
T Consensus 197 il~~~~~~~~~-~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 271 (297)
T 3b9p_A 197 LLNRLLQKQGS-PLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKR 271 (297)
T ss_dssp HHHHHHGGGSC-CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTS
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHH
Confidence 45556666665 4788888888887776655 3344443333222 1357999999988854
No 114
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=31.28 E-value=1.1e+02 Score=25.32 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCcccChHHHHHHHHHHHHHHHH----HHHHHHHHHhH------------hCCCCCCHHHHHHHHHH
Q 030559 13 KIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVD----VLTDAQVYSEH------------AGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 13 ~~I~~ILks~Gv~~yep~Vv~qLlEfayrYt~~----VL~DA~~yA~H------------AgR~tI~~eDVrLAI~~ 73 (175)
.++..+++..|+. +++.++..|...+..|+.. ++..|...+-. .....|+.+|+..|++.
T Consensus 258 ~il~~~~~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~ 333 (357)
T 3d8b_A 258 QIVINLMSKEQCC-LSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRT 333 (357)
T ss_dssp HHHHHHHHTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHH
T ss_pred HHHHHHHhhcCCC-ccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHh
Confidence 4556666777753 7788888887766654443 33333332222 23457999999999976
No 115
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.54 E-value=64 Score=28.71 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=40.2
Q ss_pred HHHHHHHhCCCc-ccChHHHHHHHH----HHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030559 14 IVKSLLKSMGVE-EYEPRVIHQFLE----VWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSK 74 (175)
Q Consensus 14 ~I~~ILks~Gv~-~yep~Vv~qLlE----fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
++...++.+... +++ ...|.+ |.-.-...+..+|..+|-..++..|+.+|+..|++..
T Consensus 360 Il~~~~~~~~~~~d~d---l~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v 422 (437)
T 4b4t_L 360 IFKIHTAKVKKTGEFD---FEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKV 422 (437)
T ss_dssp HHHHHHHTSCBCSCCC---HHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcccC---HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 455556666542 333 233333 3445677888899999988899999999999999753
No 116
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=29.46 E-value=56 Score=22.22 Aligned_cols=65 Identities=18% Similarity=0.256 Sum_probs=41.8
Q ss_pred CCChhHHHHHHHHHh----CCC-cccChHHHHHHHHHHH----HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 030559 7 DLPRDAKIVKSLLKS----MGV-EEYEPRVIHQFLEVWY----RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSK 74 (175)
Q Consensus 7 ~~PrDa~~I~~ILks----~Gv-~~yep~Vv~qLlEfay----rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 74 (175)
.-|.|..--..||+- +.+ .+++ ...|.+.+. .=...|..+|...|-..++..|+.+|+..|++..
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvd---l~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGIN---LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCC---CHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccC---HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 346676665566554 322 1232 233443333 3355788888888888888899999999999753
No 117
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=28.70 E-value=1.5e+02 Score=24.50 Aligned_cols=67 Identities=12% Similarity=0.326 Sum_probs=44.6
Q ss_pred CCCChhHHH---HHHHHHhCCCcccC-----hHHHHHHHHHHHHHHHHHHHHHHHHHhHhCC--------------CCCC
Q 030559 6 EDLPRDAKI---VKSLLKSMGVEEYE-----PRVIHQFLEVWYRYVVDVLTDAQVYSEHAGK--------------TTID 63 (175)
Q Consensus 6 ~~~PrDa~~---I~~ILks~Gv~~ye-----p~Vv~qLlEfayrYt~~VL~DA~~yA~HAgR--------------~tI~ 63 (175)
+.+-+|..+ ..+++.++||.-.. -.+.. +-||=|..+..|++=-...-.+.|. ..|+
T Consensus 52 ~eI~~dp~fR~~F~~mc~siGVDPLa~s~kg~~~lg-~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS 130 (233)
T 1u5t_A 52 SELQASPEFRSKFMHMCSSIGIDPLSLFDRDKHLFT-VNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVG 130 (233)
T ss_dssp TTTTTCHHHHHHHHHHHHHHTCCHHHHTTSSGGGTT-HHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCC
T ss_pred hhcccCHHHHHHHHHHHHHcCCCCCccCCccccccC-cchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCC
Confidence 345566553 67888899996333 22223 4789888888888777666555552 3678
Q ss_pred HHHHHHHHHH
Q 030559 64 CDDIKLAVQS 73 (175)
Q Consensus 64 ~eDVrLAI~~ 73 (175)
.+||.-||+.
T Consensus 131 ~dDi~rAik~ 140 (233)
T 1u5t_A 131 LDDLEKSIDM 140 (233)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888765
No 118
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.14 E-value=94 Score=27.56 Aligned_cols=61 Identities=10% Similarity=0.157 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCCc-ccChHHHHHHHH-HHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 13 KIVKSLLKSMGVE-EYEPRVIHQFLE-VWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 13 ~~I~~ILks~Gv~-~yep~Vv~qLlE-fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
+++...++.+... +++-+.+....+ |.-.-...+..+|..+|-..|+..|+.+|+.-|++.
T Consensus 359 ~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~ 421 (434)
T 4b4t_M 359 QILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISE 421 (434)
T ss_dssp HHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHS
T ss_pred HHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 4555566666542 333222222211 444567788899999998889999999999999965
No 119
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=27.54 E-value=1.1e+02 Score=20.54 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 37 EVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 37 EfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
|+++-|+.=+|.|+ | ..|+++||+--+++
T Consensus 6 ela~~YAAllL~~~-------g-~~~ta~~I~~il~A 34 (69)
T 2lbf_A 6 ELACIYSALILHDD-------E-VTVTEDKINALIKA 34 (69)
T ss_dssp HHHHHHHHHHHHHH-------T-CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-------C-CCCCHHHHHHHHHH
Confidence 78888888777776 6 69999999988877
No 120
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=27.37 E-value=1.6e+02 Score=24.24 Aligned_cols=59 Identities=15% Similarity=0.334 Sum_probs=35.9
Q ss_pred HHHHHHhCCCcccChH--HHHH---HHHHHHHHHHHHHHHHHHHHhHhC-----------------C--CCCCHHHHHHH
Q 030559 15 VKSLLKSMGVEEYEPR--VIHQ---FLEVWYRYVVDVLTDAQVYSEHAG-----------------K--TTIDCDDIKLA 70 (175)
Q Consensus 15 I~~ILks~Gv~~yep~--Vv~q---LlEfayrYt~~VL~DA~~yA~HAg-----------------R--~tI~~eDVrLA 70 (175)
..+++.++||.-..-. +-.+ +-+|=|..+..|++=-...-.+.| . ..|+.+||.-|
T Consensus 44 F~~mc~siGVDPlas~kg~ws~~lG~gdfy~eLavqIvEvC~~tr~~nGGli~L~el~~~~~r~Rg~~~~~IS~dDi~rA 123 (234)
T 3cuq_A 44 FQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIRA 123 (234)
T ss_dssp HHHHHHHHTCCTTSCTTSHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHTTTTCCSSCCHHHHHHH
T ss_pred HHHHHHHcCCCcccCCcchhhhhcCcchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHHhcCCccCccCHHHHHHH
Confidence 5667788888633322 1111 347777777776665444333333 1 57899999999
Q ss_pred HHH
Q 030559 71 VQS 73 (175)
Q Consensus 71 I~~ 73 (175)
|+.
T Consensus 124 ik~ 126 (234)
T 3cuq_A 124 IKK 126 (234)
T ss_dssp HHH
T ss_pred HHH
Confidence 976
No 121
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=26.83 E-value=1.9e+02 Score=23.15 Aligned_cols=14 Identities=43% Similarity=0.470 Sum_probs=10.3
Q ss_pred HHHHHHHHHhCCCc
Q 030559 12 AKIVKSLLKSMGVE 25 (175)
Q Consensus 12 a~~I~~ILks~Gv~ 25 (175)
..-+.+++.++||.
T Consensus 46 ~~~f~~m~~slGvd 59 (218)
T 3cuq_B 46 TIRFKSYLLSMGIA 59 (218)
T ss_dssp SHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 45677788888885
No 122
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=25.56 E-value=75 Score=20.65 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=22.9
Q ss_pred ChhHHHHHHHHHhCCCcccChHHHHHHHHHH
Q 030559 9 PRDAKIVKSLLKSMGVEEYEPRVIHQFLEVW 39 (175)
Q Consensus 9 PrDa~~I~~ILks~Gv~~yep~Vv~qLlEfa 39 (175)
...+.=|..||++.|+ ++++.-+..|...+
T Consensus 16 ~~t~~~I~~il~aaGv-eve~~~~~~~~~~L 45 (58)
T 3a1y_A 16 EINEENLKAVLQAAGV-EPEEARIKALVAAL 45 (58)
T ss_dssp CCCHHHHHHHHHHTTC-CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCC-CccHHHHHHHHHHH
Confidence 4456678899999999 58888877776544
No 123
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=22.51 E-value=29 Score=26.97 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 030559 40 YRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73 (175)
Q Consensus 40 yrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 73 (175)
-+-...++..|..+|...|+..|+.+|++.|++.
T Consensus 219 g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 252 (268)
T 2r62_A 219 GADLANIINEAALLAGRNNQKEVRQQHLKEAVER 252 (268)
T ss_dssp HHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHH
Confidence 4567788889988888888899999999988764
No 124
>3rq9_A TSI2, type VI secretion immunity protein; antitoxin, TSE2-BI protein; 1.00A {Pseudomonas aeruginosa} PDB: 3vpv_A
Probab=22.39 E-value=38 Score=24.02 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhccccCCCCcHHHHH
Q 030559 64 CDDIKLAVQSKVNSSFSQPPAREVLL 89 (175)
Q Consensus 64 ~eDVrLAI~~r~~~~f~~pppre~Ll 89 (175)
+||+++|.+. ...+|+.-||.+.|+
T Consensus 48 AdDLk~AY~~-a~~~Ys~LPpY~~Li 72 (85)
T 3rq9_A 48 ADDLKNAYEQ-ALGQYSGLPPYDRLI 72 (85)
T ss_dssp HHHHHHHHHH-HHHHCSSCCCHHHHT
T ss_pred hHHHHHHHHH-HHHhhcCCCCHHHHh
Confidence 6899999987 446788999999887
No 125
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=22.07 E-value=63 Score=25.16 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhccccCCCCcHHHHHHHHHhh
Q 030559 64 CDDIKLAVQSKVNSSFSQPPAREVLLELAKNR 95 (175)
Q Consensus 64 ~eDVrLAI~~r~~~~f~~pppre~LlelA~e~ 95 (175)
+|.++-.|...+...|..|-+|+.++.++...
T Consensus 62 aD~l~~~I~~~L~~~~~~P~dredi~~L~~~l 93 (227)
T 2olt_A 62 GDSLKREIRLTLPSGLFMPVERTDLLELLTQQ 93 (227)
T ss_dssp HHHHHHHHHHHGGGCCSCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccCCCCHHHHHHHHHHH
Confidence 58899999999999999999999999987653
No 126
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=20.48 E-value=2.9e+02 Score=25.90 Aligned_cols=71 Identities=17% Similarity=0.169 Sum_probs=48.0
Q ss_pred HHHHHHHhCCCcccChHHHHHHHHHHH---------------HHHHHHHHHHHHHHhHhCCCCCCHHHHHHHHHHhhccc
Q 030559 14 IVKSLLKSMGVEEYEPRVIHQFLEVWY---------------RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSS 78 (175)
Q Consensus 14 ~I~~ILks~Gv~~yep~Vv~qLlEfay---------------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~ 78 (175)
++..||+.+|+. -..+...|..+.. .-+..+|+.|..+|...|...|+.+.+-+|+-..-+.
T Consensus 45 ~~~~iL~~~gvd--~~~l~~~l~~~l~~~p~~~~~~~~~~~S~~~~~vL~~A~~~a~~~g~~~I~~ehlLlall~~~~~- 121 (854)
T 1qvr_A 45 LAWRLLEKAGAD--PKALKELQERELARLPKVEGAEVGQYLTSRLSGALNRAEGLMEELKDRYVAVDTLVLALAEATPG- 121 (854)
T ss_dssp HHHHHHHTTSSC--HHHHHHHHHHHHHTSCCCCGGGTTCEECHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcEeeHHHHHHHHHhcccc-
Confidence 567889999984 1233333333332 2366789999999998999999999999999754332
Q ss_pred cCCCCcHHHHHH
Q 030559 79 FSQPPAREVLLE 90 (175)
Q Consensus 79 f~~pppre~Lle 90 (175)
. .+++.+..
T Consensus 122 ~---~~~~~~~~ 130 (854)
T 1qvr_A 122 L---PGLEALKG 130 (854)
T ss_dssp S---CCHHHHHH
T ss_pred c---CCHHHHHH
Confidence 1 44555543
Done!