BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030561
(175 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 9/63 (14%)
Query: 104 GVKALDLRLGRGP-VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS 162
GV + R+G G P+ GD+V +HY G+L+ G +FDS++D + PF+F LG
Sbjct: 32 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLS--NGKKFDSSHDRNE------PFVFSLGK 83
Query: 163 GKV 165
G+V
Sbjct: 84 GQV 86
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 9/63 (14%)
Query: 104 GVKALDLRLGRGP-VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS 162
GV + R+G G P+ GD+V +HY G+LA G +FDS++D + PF+F +G
Sbjct: 32 GVLKIVKRVGHGEETPMIGDRVYVHYNGKLA--NGKKFDSSHDRNE------PFVFSIGK 83
Query: 163 GKV 165
G+V
Sbjct: 84 GQV 86
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 9/63 (14%)
Query: 104 GVKALDLRLGRGP-VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS 162
GV + R+G G P+ GD+V +HY G+L+ G +FDS++D + PF+F LG
Sbjct: 36 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLS--NGKKFDSSHDRNE------PFVFSLGK 87
Query: 163 GKV 165
G+V
Sbjct: 88 GQV 90
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 9/63 (14%)
Query: 104 GVKALDLRLGRGP-VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS 162
GV + R+G G P+ GD+V +HY G+L+ G +FDS++D + PF+F LG
Sbjct: 36 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLS--NGKKFDSSHDRNE------PFVFSLGK 87
Query: 163 GKV 165
G+V
Sbjct: 88 GQV 90
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 9/63 (14%)
Query: 104 GVKALDLRLGRGP-VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS 162
GV + R+G G P+ GD+V +HY G+L+ G +FDS++D + PF+F LG
Sbjct: 36 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLS--NGKKFDSSHDRNE------PFVFSLGK 87
Query: 163 GKV 165
G+V
Sbjct: 88 GQV 90
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 9/63 (14%)
Query: 104 GVKALDLRLGRGP-VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS 162
GV + R+G G P+ GD+V +HY G+L+ G +FDS++D + PF+F LG
Sbjct: 20 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLS--NGKKFDSSHDRNE------PFVFSLGK 71
Query: 163 GKV 165
G+V
Sbjct: 72 GQV 74
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 9/63 (14%)
Query: 104 GVKALDLRLGRGP-VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS 162
GV + R+G G P+ GD+V +HY G+L+ G +FDS++D + PF+F LG
Sbjct: 20 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLS--NGKKFDSSHDRNE------PFVFSLGK 71
Query: 163 GKV 165
G+V
Sbjct: 72 GQV 74
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 95 ELLELPNSGGVKALDLRLGRG---PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSG 151
E + L GGV LR G G P G++V +HY G+L + G FDS+ +
Sbjct: 7 EQVHLTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLES-SGKVFDSSRERN---- 61
Query: 152 EPIPFLFILGSGKV 165
+PF F LG G+V
Sbjct: 62 --VPFKFHLGQGEV 73
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 104 GVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG 163
G+K DL G G G V++HY G L G +FDS+ D D PF F+LG G
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLT--DGQKFDSSKDRND------PFAFVLGGG 156
Query: 164 KV 165
V
Sbjct: 157 MV 158
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 104 GVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG 163
G+K DL G G G V++HY G L Q +FDS+ D D PF F+LG G
Sbjct: 9 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQ--KFDSSKDRND------PFAFVLGGG 60
Query: 164 KV 165
V
Sbjct: 61 MV 62
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 104 GVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG 163
G+K DL G G G V++HY G L G +FDS+ D D PF F+LG G
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLT--DGQKFDSSKDRND------PFAFVLGGG 156
Query: 164 KV 165
V
Sbjct: 157 MV 158
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 104 GVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG 163
G+K DL G G G V++HY G L G +FDS+ D D PF F+LG G
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLT--DGQKFDSSKDRND------PFAFVLGGG 156
Query: 164 KV 165
V
Sbjct: 157 MV 158
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 104 GVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG 163
G+K DL G G G V++HY G L Q +FDS+ D D PF F+LG G
Sbjct: 9 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQ--KFDSSKDRND------PFAFVLGGG 60
Query: 164 KV 165
V
Sbjct: 61 HV 62
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 104 GVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG 163
G+K DL G G G V++HY G L G +FDS+ D D PF F+LG G
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLT--DGQKFDSSKDRND------PFEFVLGGG 156
Query: 164 KV 165
V
Sbjct: 157 MV 158
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 95 ELLELPNSGGVKALDLRLG---RGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSG 151
E +EL GGV L+ G +P G++V +HY G+L + G FDS++D
Sbjct: 8 EKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLES-TGKVFDSSFDRN---- 62
Query: 152 EPIPFLFILGSGKV 165
+PF F L G+V
Sbjct: 63 --VPFKFHLEQGEV 74
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 95 ELLELPNSGGVKALDLRLG---RGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSG 151
E +EL GGV L+ G +P G++V +HY G+L + G FDS++D
Sbjct: 8 EKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLES-TGKVFDSSFDRN---- 62
Query: 152 EPIPFLFILGSGKV 165
+PF F L G+V
Sbjct: 63 --VPFKFHLEQGEV 74
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 104 GVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG 163
G+K DL G G G V++HY G L Q +FDS+ D D PF F+LG G
Sbjct: 13 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQ--KFDSSKDRND------PFAFVLGGG 64
Query: 164 KV 165
V
Sbjct: 65 MV 66
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 104 GVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG 163
G+K DL G G G V++HY G L Q +FDS+ D D PF F+LG G
Sbjct: 29 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQ--KFDSSKDRND------PFAFVLGGG 80
Query: 164 KV 165
V
Sbjct: 81 MV 82
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 104 GVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG 163
G+K DL G G G V++HY G L G +F S+ D D PF F+LG G
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLT--DGQKFGSSKDRND------PFAFVLGGG 156
Query: 164 KV 165
V
Sbjct: 157 MV 158
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 9/63 (14%)
Query: 104 GVKALDLRLGRG-PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS 162
GV + R G G +P+ GD+V +HY G L G +FDS+ D KD+ F F LG
Sbjct: 32 GVLKVIKREGTGTEMPMIGDRVFVHYTGWLL--DGTKFDSSLDRKDK------FSFDLGK 83
Query: 163 GKV 165
G+V
Sbjct: 84 GEV 86
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 9/63 (14%)
Query: 104 GVKALDLRLGRG-PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS 162
GV + R G G +P+ GD+V +HY G L G +FDS+ D KD+ F F LG
Sbjct: 36 GVLKVIKREGTGTEMPMIGDRVFVHYTGWLL--DGTKFDSSLDRKDK------FSFDLGK 87
Query: 163 GKV 165
G+V
Sbjct: 88 GEV 90
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 9/63 (14%)
Query: 104 GVKALDLRLGRG-PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS 162
GV + R G G +P+ GD+V +HY G L G +FDS+ D KD+ F F LG
Sbjct: 52 GVLKVIKREGTGTEMPMIGDRVFVHYTGWLL--DGTKFDSSLDRKDK------FSFDLGK 103
Query: 163 GKV 165
G+V
Sbjct: 104 GEV 106
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 104 GVKALDLRLGRG-PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS 162
GV + R G G P+ GD+V +HY G L G +FDS+ D KD+ F F LG
Sbjct: 31 GVLKVIKREGTGTETPMIGDRVFVHYTGWLL--DGTKFDSSLDRKDK------FSFDLGK 82
Query: 163 GKV 165
G+V
Sbjct: 83 GEV 85
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 33.5 bits (75), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 118 PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKV 165
P GD+V +HY G L G +FDS+ D D F F LG G+V
Sbjct: 27 PEVGDEVEVHYTGTLL--DGKKFDSSRDRDDT------FKFKLGQGQV 66
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 33.1 bits (74), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 118 PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKV 165
P GD+V +HY G L G +FDS+ D D F F LG G+V
Sbjct: 43 PEVGDEVEVHYTGTLL--DGKKFDSSRDRDDT------FKFKLGQGQV 82
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 33.1 bits (74), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 110 LRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPF 156
+ G+G P D D V ++Y G L G FD++Y GEP+ F
Sbjct: 128 VEAGKGEAPKDSDTVVVNYKGTLI--DGKEFDNSYTR----GEPLSF 168
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 110 LRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPF 156
+ G+G P D D V ++Y G L G FD++Y GEP+ F
Sbjct: 128 VEAGKGEAPKDSDTVVVNYKGTLI--DGKEFDNSYTR----GEPLSF 168
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 104 GVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG 163
G+ D +G GP V G + HY G+L + G FDS+Y+ P F +G G
Sbjct: 13 GLAFCDKVVGYGPEAVKGQLIKAHYVGKL--ENGKVFDSSYNRGK------PLTFRIGVG 64
Query: 164 KV 165
+V
Sbjct: 65 EV 66
>pdb|2QV8|A Chain A, Structure Of The Minor Pseudopilin Epsh From The Type 2
Secretion System Of Vibrio Cholerae
pdb|2QV8|B Chain B, Structure Of The Minor Pseudopilin Epsh From The Type 2
Secretion System Of Vibrio Cholerae
Length = 159
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 145 DHKDQSGEPIPFLFILGSGKVSP 167
+ K+Q EP P LF+L SG+V+P
Sbjct: 100 EKKEQKQEPAPQLFVLSSGEVTP 122
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 103 GGVKALDLRLGRGPV-PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILG 161
G VK + G G P GD V IHY G L + G +FDS+ D PF +G
Sbjct: 6 GNVKIDRISPGDGATFPKTGDLVTIHYTGTL--ENGQKFDSSVDRGS------PFQCNIG 57
Query: 162 SGKV 165
G+V
Sbjct: 58 VGQV 61
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 125 AIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVSPNF 169
A+ Y + QGW S Q G+P+P + L GK PNF
Sbjct: 836 ALLYLKSIEELQGWDGQSPGTESHQKGKPVPRIAEL-MGKKLPNF 879
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 125 AIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVSPNF 169
A+ Y + QGW S Q G+P+P + L GK PNF
Sbjct: 836 ALLYLKSIEELQGWDGQSPGTESHQKGKPVPRIAEL-MGKKLPNF 879
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 110 LRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPF 156
+ G G P D V + Y GRL G FDST +++G+P F
Sbjct: 113 INSGNGVKPGKSDTVTVEYTGRLI--DGTVFDST----EKTGKPATF 153
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 110 LRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPF 156
+ G G P D V + Y GRL G FDST +++G+P F
Sbjct: 37 INSGNGVKPGKSDTVTVEYTGRLI--DGTVFDST----EKTGKPATF 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,618,746
Number of Sequences: 62578
Number of extensions: 160132
Number of successful extensions: 359
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 358
Number of HSP's gapped (non-prelim): 34
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)