Query 030561
Match_columns 175
No_of_seqs 184 out of 1165
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 15:35:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030561.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030561hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0544 FKBP-type peptidyl-pro 99.7 6.6E-17 1.4E-21 121.0 7.2 63 104-174 2-65 (108)
2 COG0545 FkpA FKBP-type peptidy 99.7 1.9E-16 4.1E-21 131.9 7.4 74 89-174 89-162 (205)
3 PRK11570 peptidyl-prolyl cis-t 99.5 9.3E-14 2E-18 115.7 9.6 78 86-175 87-164 (206)
4 KOG0549 FKBP-type peptidyl-pro 99.5 1.2E-13 2.5E-18 113.7 8.1 66 101-174 66-133 (188)
5 KOG0552 FKBP-type peptidyl-pro 99.4 3.9E-13 8.5E-18 113.7 7.2 66 100-173 117-183 (226)
6 PRK10902 FKBP-type peptidyl-pr 99.3 4.5E-12 9.7E-17 109.6 9.3 77 86-174 131-207 (269)
7 TIGR03516 ppisom_GldI peptidyl 99.3 1E-11 2.2E-16 101.3 9.1 67 99-174 65-133 (177)
8 PF00254 FKBP_C: FKBP-type pep 99.0 1.5E-09 3.2E-14 77.9 6.3 50 117-174 4-53 (94)
9 PRK15095 FKBP-type peptidyl-pr 98.9 2.6E-09 5.6E-14 85.5 6.8 50 117-174 4-53 (156)
10 KOG0543 FKBP-type peptidyl-pro 97.8 7.3E-05 1.6E-09 68.2 7.4 60 102-173 83-145 (397)
11 TIGR00115 tig trigger factor. 97.1 0.0009 2E-08 60.0 5.8 48 116-174 145-192 (408)
12 PRK01490 tig trigger factor; P 97.1 0.0011 2.3E-08 60.1 5.8 47 117-174 157-203 (435)
13 KOG0543 FKBP-type peptidyl-pro 96.6 0.0018 3.9E-08 59.2 3.7 33 111-145 1-34 (397)
14 COG0544 Tig FKBP-type peptidyl 96.6 0.0031 6.7E-08 58.3 5.2 46 118-174 158-203 (441)
15 KOG0545 Aryl-hydrocarbon recep 95.4 0.019 4.1E-07 50.6 4.0 67 101-173 8-76 (329)
16 COG1047 SlpA FKBP-type peptidy 93.5 0.1 2.2E-06 43.1 4.0 27 117-145 2-28 (174)
17 TIGR03096 nitroso_cyanin nitro 49.3 41 0.00088 26.7 4.9 28 102-129 43-76 (135)
18 PRK10737 FKBP-type peptidyl-pr 27.2 64 0.0014 27.0 2.9 18 117-134 2-19 (196)
19 PF01346 FKBP_N: Domain amino 25.4 65 0.0014 23.8 2.4 22 86-109 103-124 (124)
No 1
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=6.6e-17 Score=120.98 Aligned_cols=63 Identities=35% Similarity=0.637 Sum_probs=59.0
Q ss_pred CeEEEEeEcCCCC-CCCCCCeEEEEEEEEEeCCCCcEEecccccCCCCCCCcCEEEEeCCCCccHhHHhhhc
Q 030561 104 GVKALDLRLGRGP-VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVSPNFLVNAI 174 (175)
Q Consensus 104 Gv~~~iLk~G~G~-~p~~GD~V~VhYtG~L~~~dG~vFDSS~d~~~~~G~~~P~~F~LG~GqVIpG~eeALi 174 (175)
|+.++++..|+|. .|+.||+|.+||+|.|. ||++||||.+++. ||.|++|.|+||+||||++.
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~--dG~kfDSs~dr~k------Pfkf~IGkgeVIkGwdegv~ 65 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQ--DGKKFDSSRDRGK------PFKFKIGKGEVIKGWDEGVA 65 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEec--CCcEeecccccCC------CeeEEecCcceeechhhcch
Confidence 6899999999995 59999999999999999 6999999999864 99999999999999999975
No 2
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.9e-16 Score=131.90 Aligned_cols=74 Identities=34% Similarity=0.530 Sum_probs=64.4
Q ss_pred HHHhcccceecCCCCCeEEEEeEcCCCCCCCCCCeEEEEEEEEEeCCCCcEEecccccCCCCCCCcCEEEEeCCCCccHh
Q 030561 89 AAAAAAELLELPNSGGVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVSPN 168 (175)
Q Consensus 89 ~~~~~~~~~~l~~~sGv~~~iLk~G~G~~p~~GD~V~VhYtG~L~~~dG~vFDSS~d~~~~~G~~~P~~F~LG~GqVIpG 168 (175)
.++.+..+.. .++|++|++++.|+|+.|+.+|+|.|||+|+|. ||++|||||+++ + |+.|.|| +||+|
T Consensus 89 ~~~k~~~v~~--~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~--~G~vFDsS~~rg----~--p~~f~l~--~vI~G 156 (205)
T COG0545 89 KNAKEKGVKT--LPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLI--DGTVFDSSYDRG----Q--PAEFPLG--GVIPG 156 (205)
T ss_pred hhcccCCceE--CCCCcEEEEEeccCCCCCCCCCEEEEEEEEecC--CCCccccccccC----C--CceeecC--Ceeeh
Confidence 3333444444 559999999999999999999999999999999 699999999986 3 9999997 99999
Q ss_pred HHhhhc
Q 030561 169 FLVNAI 174 (175)
Q Consensus 169 ~eeALi 174 (175)
|++||.
T Consensus 157 w~egl~ 162 (205)
T COG0545 157 WDEGLQ 162 (205)
T ss_pred HHHHHh
Confidence 999984
No 3
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.50 E-value=9.3e-14 Score=115.65 Aligned_cols=78 Identities=27% Similarity=0.411 Sum_probs=69.0
Q ss_pred cHHHHHhcccceecCCCCCeEEEEeEcCCCCCCCCCCeEEEEEEEEEeCCCCcEEecccccCCCCCCCcCEEEEeCCCCc
Q 030561 86 SSAAAAAAAELLELPNSGGVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKV 165 (175)
Q Consensus 86 ~~~~~~~~~~~~~l~~~sGv~~~iLk~G~G~~p~~GD~V~VhYtG~L~~~dG~vFDSS~d~~~~~G~~~P~~F~LG~GqV 165 (175)
+.+.++.++++..+ ++|++|+++++|+|..|+.+|.|.|||+|++. ||++|||||+++ + |+.|.+| ++
T Consensus 87 fl~~~~k~~gv~~t--~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~--dG~vfdss~~~g----~--P~~f~l~--~v 154 (206)
T PRK11570 87 FLEENAKKEGVNST--ESGLQFRVLTQGEGAIPARTDRVRVHYTGKLI--DGTVFDSSVARG----E--PAEFPVN--GV 154 (206)
T ss_pred HHHHhhhcCCcEEC--CCCcEEEEEeCCCCCCCCCCCEEEEEEEEEEC--CCCEEEeccCCC----C--CeEEEee--ch
Confidence 66777778888765 49999999999999999999999999999998 699999999875 3 9999996 79
Q ss_pred cHhHHhhhcC
Q 030561 166 SPNFLVNAIC 175 (175)
Q Consensus 166 IpG~eeALi~ 175 (175)
|+||+++|.+
T Consensus 155 ipG~~eaL~~ 164 (206)
T PRK11570 155 IPGWIEALTL 164 (206)
T ss_pred hhHHHHHHcC
Confidence 9999999863
No 4
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.2e-13 Score=113.66 Aligned_cols=66 Identities=29% Similarity=0.513 Sum_probs=59.2
Q ss_pred CCCCeEEEEeEcCCC--CCCCCCCeEEEEEEEEEeCCCCcEEecccccCCCCCCCcCEEEEeCCCCccHhHHhhhc
Q 030561 101 NSGGVKALDLRLGRG--PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVSPNFLVNAI 174 (175)
Q Consensus 101 ~~sGv~~~iLk~G~G--~~p~~GD~V~VhYtG~L~~~dG~vFDSS~d~~~~~G~~~P~~F~LG~GqVIpG~eeALi 174 (175)
+.+++++.++++-+. .+.+.||+|.+||+|.+. ||++|||||++++ |++|+||.|+||+|||++|+
T Consensus 66 ~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~le--DGt~fdSS~~rg~------P~~f~LG~gqVIkG~Dqgl~ 133 (188)
T KOG0549|consen 66 PDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLE--DGTKFDSSYSRGA------PFTFTLGTGQVIKGWDQGLL 133 (188)
T ss_pred CCCceeEEEEECCccccccccCCCEEEEEEEEEec--CCCEEeeeccCCC------CEEEEeCCCceeccHhHHhh
Confidence 568899999988653 469999999999999998 7999999999964 99999999999999999985
No 5
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=3.9e-13 Score=113.74 Aligned_cols=66 Identities=41% Similarity=0.743 Sum_probs=62.0
Q ss_pred CCCCCeEEEEeEcCCCCCCCCCCeEEEEEEEEEeCCCCcEEecccccCCCCCCCcCEE-EEeCCCCccHhHHhhh
Q 030561 100 PNSGGVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFL-FILGSGKVSPNFLVNA 173 (175)
Q Consensus 100 ~~~sGv~~~iLk~G~G~~p~~GD~V~VhYtG~L~~~dG~vFDSS~d~~~~~G~~~P~~-F~LG~GqVIpG~eeAL 173 (175)
+.++||+|++++.|+|+.+..|+.|.+||+|++.. +|++||+++..+ |+. |.+|.++||+|||.++
T Consensus 117 tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~-~GkvFd~~~~~k-------p~~~f~lg~g~VIkG~d~gv 183 (226)
T KOG0552|consen 117 TLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKG-NGKVFDSNFGGK-------PFKLFRLGSGEVIKGWDVGV 183 (226)
T ss_pred ecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecC-CCeEeecccCCC-------CccccccCCCCCCchHHHhh
Confidence 45799999999999999999999999999999996 799999999875 899 9999999999999987
No 6
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.34 E-value=4.5e-12 Score=109.57 Aligned_cols=77 Identities=29% Similarity=0.418 Sum_probs=67.8
Q ss_pred cHHHHHhcccceecCCCCCeEEEEeEcCCCCCCCCCCeEEEEEEEEEeCCCCcEEecccccCCCCCCCcCEEEEeCCCCc
Q 030561 86 SSAAAAAAAELLELPNSGGVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKV 165 (175)
Q Consensus 86 ~~~~~~~~~~~~~l~~~sGv~~~iLk~G~G~~p~~GD~V~VhYtG~L~~~dG~vFDSS~d~~~~~G~~~P~~F~LG~GqV 165 (175)
|.+.++.+.++.. .++|++|+++++|+|..|+.||.|.|||.|++. ||++||++++++ . |+.|.++ ++
T Consensus 131 fl~~~~k~~gv~~--t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~--dG~vfdss~~~g----~--p~~f~l~--~v 198 (269)
T PRK10902 131 YREKFAKEKGVKT--TSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLI--DGKEFDNSYTRG----E--PLSFRLD--GV 198 (269)
T ss_pred HHHHhccCCCcEE--CCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeC--CCCEeeccccCC----C--ceEEecC--Cc
Confidence 5667777777776 459999999999999999999999999999998 699999999875 3 9999985 79
Q ss_pred cHhHHhhhc
Q 030561 166 SPNFLVNAI 174 (175)
Q Consensus 166 IpG~eeALi 174 (175)
||||+++|.
T Consensus 199 ipG~~EaL~ 207 (269)
T PRK10902 199 IPGWTEGLK 207 (269)
T ss_pred chHHHHHHh
Confidence 999999985
No 7
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.31 E-value=1e-11 Score=101.26 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=60.0
Q ss_pred cCCCCCeEEEEeEc--CCCCCCCCCCeEEEEEEEEEeCCCCcEEecccccCCCCCCCcCEEEEeCCCCccHhHHhhhc
Q 030561 99 LPNSGGVKALDLRL--GRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVSPNFLVNAI 174 (175)
Q Consensus 99 l~~~sGv~~~iLk~--G~G~~p~~GD~V~VhYtG~L~~~dG~vFDSS~d~~~~~G~~~P~~F~LG~GqVIpG~eeALi 174 (175)
.++++|+.|.++++ |+|..|+.||.|.+||++++. ||++|+++++.+ |+.|.+|.+++|+||+++|.
T Consensus 65 ~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~--dG~v~~ss~~~~-------P~~f~vg~~~vi~Gl~e~L~ 133 (177)
T TIGR03516 65 ETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRAL--DGDVIYSEEELG-------PQTYKVDQQDLFSGLRDGLK 133 (177)
T ss_pred eECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeC--CCCEEEeCCCCC-------CEEEEeCCcchhHHHHHHHc
Confidence 55789999999977 667789999999999999999 699999998642 99999999999999999985
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=98.97 E-value=1.5e-09 Score=77.91 Aligned_cols=50 Identities=52% Similarity=0.872 Sum_probs=45.7
Q ss_pred CCCCCCeEEEEEEEEEeCCCCcEEecccccCCCCCCCcCEEEEeCCCCccHhHHhhhc
Q 030561 117 VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVSPNFLVNAI 174 (175)
Q Consensus 117 ~p~~GD~V~VhYtG~L~~~dG~vFDSS~d~~~~~G~~~P~~F~LG~GqVIpG~eeALi 174 (175)
+|+.||.|.+||++++. +|++|+++++.+ . |+.|.+|.+++|+||+++|+
T Consensus 4 ~~~~gd~V~i~y~~~~~--~g~~~~~~~~~~----~--~~~~~~g~~~~i~g~e~al~ 53 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLE--DGKVFDSSYQEG----E--PFEFRLGSGQVIPGLEEALI 53 (94)
T ss_dssp SBSTTSEEEEEEEEEET--TSEEEEETTTTT----S--EEEEETTSSSSSHHHHHHHT
T ss_pred cCCCCCEEEEEEEEEEC--CCcEEEEeeecC----c--ceeeeeccCccccchhhhcc
Confidence 49999999999999998 699999998764 3 99999999999999999986
No 9
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=98.92 E-value=2.6e-09 Score=85.49 Aligned_cols=50 Identities=26% Similarity=0.400 Sum_probs=45.5
Q ss_pred CCCCCCeEEEEEEEEEeCCCCcEEecccccCCCCCCCcCEEEEeCCCCccHhHHhhhc
Q 030561 117 VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVSPNFLVNAI 174 (175)
Q Consensus 117 ~p~~GD~V~VhYtG~L~~~dG~vFDSS~d~~~~~G~~~P~~F~LG~GqVIpG~eeALi 174 (175)
+++.||+|.+||++++. ||++||||++.+ + |+.|.+|.|++|+||+++|+
T Consensus 4 ~i~~~~~V~v~Y~~~~~--dG~v~dst~~~~----~--P~~f~~G~g~vi~gle~aL~ 53 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLD--DGSTAESTRNNG----K--PALFRLGDGSLSEGLEQQLL 53 (156)
T ss_pred ccCCCCEEEEEEEEEeC--CCCEEEECCCCC----C--CEEEEeCCCCccHHHHHHHc
Confidence 57899999999999997 699999998754 3 99999999999999999986
No 10
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=7.3e-05 Score=68.15 Aligned_cols=60 Identities=30% Similarity=0.423 Sum_probs=51.9
Q ss_pred CCCeEEEEeEcCCC--CCCCCCCeEEEEEEEEEeCCCCcEEecccccCCCCCCCcCEEEEeCC-CCccHhHHhhh
Q 030561 102 SGGVKALDLRLGRG--PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS-GKVSPNFLVNA 173 (175)
Q Consensus 102 ~sGv~~~iLk~G~G--~~p~~GD~V~VhYtG~L~~~dG~vFDSS~d~~~~~G~~~P~~F~LG~-GqVIpG~eeAL 173 (175)
+++|.++++++|.| ..|.+|..|.|||.|++. ++ +|+++. . .|.|.+|. ..||.|||.+|
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~--~~-~f~~~~-------~--~fe~~~Ge~~~vi~Gle~al 145 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELE--DG-VFDQRE-------L--RFEFGEGEDIDVIEGLEIAL 145 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEEC--Cc-ceeccc-------c--ceEEecCCccchhHHHHHHH
Confidence 89999999999999 579999999999999998 35 777542 2 68899988 58999999987
No 11
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=97.12 E-value=0.0009 Score=60.02 Aligned_cols=48 Identities=29% Similarity=0.507 Sum_probs=41.0
Q ss_pred CCCCCCCeEEEEEEEEEeCCCCcEEecccccCCCCCCCcCEEEEeCCCCccHhHHhhhc
Q 030561 116 PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVSPNFLVNAI 174 (175)
Q Consensus 116 ~~p~~GD~V~VhYtG~L~~~dG~vFDSS~d~~~~~G~~~P~~F~LG~GqVIpG~eeALi 174 (175)
.+++.||.|.++|+++. +|+.|+++... |+.|.+|.+.+++||+++|+
T Consensus 145 ~~~~~gD~V~v~~~~~~---dg~~~~~~~~~--------~~~~~lg~~~~~~~~ee~L~ 192 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI---DGEAFEGGKAE--------NFSLELGSGQFIPGFEEQLV 192 (408)
T ss_pred cccCCCCEEEEEEEEEE---CCEECcCCCCC--------CeEEEECCCCcchhHHHHhC
Confidence 45789999999999976 48898876432 89999999999999999986
No 12
>PRK01490 tig trigger factor; Provisional
Probab=97.07 E-value=0.0011 Score=60.15 Aligned_cols=47 Identities=30% Similarity=0.572 Sum_probs=40.5
Q ss_pred CCCCCCeEEEEEEEEEeCCCCcEEecccccCCCCCCCcCEEEEeCCCCccHhHHhhhc
Q 030561 117 VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVSPNFLVNAI 174 (175)
Q Consensus 117 ~p~~GD~V~VhYtG~L~~~dG~vFDSS~d~~~~~G~~~P~~F~LG~GqVIpG~eeALi 174 (175)
.++.||.|.++|.|+. +|+.|+++... ++.|.+|.+++++||+++|+
T Consensus 157 ~~~~gD~V~vd~~~~~---~g~~~~~~~~~--------~~~~~lg~~~~~~~fee~L~ 203 (435)
T PRK01490 157 PAENGDRVTIDFVGSI---DGEEFEGGKAE--------DFSLELGSGRFIPGFEEQLV 203 (435)
T ss_pred cCCCCCEEEEEEEEEE---CCEECcCCCCC--------ceEEEEcCCCcchhHHHHhC
Confidence 4789999999999997 48888865432 79999999999999999986
No 13
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0018 Score=59.21 Aligned_cols=33 Identities=45% Similarity=0.884 Sum_probs=30.1
Q ss_pred EcCCCC-CCCCCCeEEEEEEEEEeCCCCcEEecccc
Q 030561 111 RLGRGP-VPVDGDQVAIHYYGRLAAKQGWRFDSTYD 145 (175)
Q Consensus 111 k~G~G~-~p~~GD~V~VhYtG~L~~~dG~vFDSS~d 145 (175)
++|+|. .|..||.|.+||+|++. ||+.||||.+
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~--dgt~fdss~d 34 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLL--DGTKFDSSRD 34 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEec--CCeecccccC
Confidence 478896 49999999999999999 6999999988
No 14
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0031 Score=58.31 Aligned_cols=46 Identities=30% Similarity=0.570 Sum_probs=39.2
Q ss_pred CCCCCeEEEEEEEEEeCCCCcEEecccccCCCCCCCcCEEEEeCCCCccHhHHhhhc
Q 030561 118 PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVSPNFLVNAI 174 (175)
Q Consensus 118 p~~GD~V~VhYtG~L~~~dG~vFDSS~d~~~~~G~~~P~~F~LG~GqVIpG~eeALi 174 (175)
++.||.|+|.|.|+. ||..|...-.. -|.|.||+|++||||+++||
T Consensus 158 a~~gD~v~IDf~g~i---Dg~~fegg~ae--------~~~l~lGs~~fipgFe~~Lv 203 (441)
T COG0544 158 AENGDRVTIDFEGSV---DGEEFEGGKAE--------NFSLELGSGRFIPGFEDQLV 203 (441)
T ss_pred cccCCEEEEEEEEEE---cCeeccCcccc--------CeEEEEcCCCchhhHHhhhc
Confidence 889999999999975 58888754332 58999999999999999987
No 15
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.019 Score=50.62 Aligned_cols=67 Identities=22% Similarity=0.251 Sum_probs=55.7
Q ss_pred CCCCeEEEEeEcCCCC--CCCCCCeEEEEEEEEEeCCCCcEEecccccCCCCCCCcCEEEEeCCCCccHhHHhhh
Q 030561 101 NSGGVKALDLRLGRGP--VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVSPNFLVNA 173 (175)
Q Consensus 101 ~~sGv~~~iLk~G~G~--~p~~GD~V~VhYtG~L~~~dG~vFDSS~d~~~~~G~~~P~~F~LG~GqVIpG~eeAL 173 (175)
...||+++++..|+|+ ...+|..|.+||.....+..++++|+|+..+ . |....+|.-=-++-||.-|
T Consensus 8 ~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~g----k--PmeiiiGkkFkL~VwE~il 76 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVG----K--PMEIIIGKKFKLEVWEIIL 76 (329)
T ss_pred cchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcC----C--CeEEeeccccccHHHHHHH
Confidence 5689999999999996 4789999999999987653578999998765 3 9999999876788887643
No 16
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=0.1 Score=43.08 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=24.4
Q ss_pred CCCCCCeEEEEEEEEEeCCCCcEEecccc
Q 030561 117 VPVDGDQVAIHYYGRLAAKQGWRFDSTYD 145 (175)
Q Consensus 117 ~p~~GD~V~VhYtG~L~~~dG~vFDSS~d 145 (175)
++++||.|.+||++++. ||++||+|.+
T Consensus 2 ~i~k~~~V~i~Y~~~~~--dg~v~Dtt~e 28 (174)
T COG1047 2 KIEKGDVVSLHYTLKVE--DGEVVDTTDE 28 (174)
T ss_pred cccCCCEEEEEEEEEec--CCcEEEcccc
Confidence 47899999999999999 6999999965
No 17
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=49.35 E-value=41 Score=26.70 Aligned_cols=28 Identities=21% Similarity=0.158 Sum_probs=23.9
Q ss_pred CCCeEEEEeEcCCCC------CCCCCCeEEEEEE
Q 030561 102 SGGVKALDLRLGRGP------VPVDGDQVAIHYY 129 (175)
Q Consensus 102 ~sGv~~~iLk~G~G~------~p~~GD~V~VhYt 129 (175)
..|++++.++.|++. .++.||.|.++++
T Consensus 43 ~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vt 76 (135)
T TIGR03096 43 VEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVE 76 (135)
T ss_pred eCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEE
Confidence 688899999989872 3899999999986
No 18
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=27.17 E-value=64 Score=26.97 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=15.5
Q ss_pred CCCCCCeEEEEEEEEEeC
Q 030561 117 VPVDGDQVAIHYYGRLAA 134 (175)
Q Consensus 117 ~p~~GD~V~VhYtG~L~~ 134 (175)
++++++.|++||++++.+
T Consensus 2 kI~~~~vV~l~Y~l~~~d 19 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTED 19 (196)
T ss_pred ccCCCCEEEEEEEEEeCC
Confidence 467899999999999864
No 19
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=25.42 E-value=65 Score=23.80 Aligned_cols=22 Identities=14% Similarity=-0.014 Sum_probs=16.7
Q ss_pred cHHHHHhcccceecCCCCCeEEEE
Q 030561 86 SSAAAAAAAELLELPNSGGVKALD 109 (175)
Q Consensus 86 ~~~~~~~~~~~~~l~~~sGv~~~i 109 (175)
|.+.++.+.++.+++ +||+|+|
T Consensus 103 fla~n~k~~GV~~t~--SGLqY~V 124 (124)
T PF01346_consen 103 FLAENAKKEGVKTTE--SGLQYKV 124 (124)
T ss_dssp HHHHHHTSTTEEE-T--TS-EEEE
T ss_pred HHHHHcCCCCCEECC--CCCeeeC
Confidence 678888888888765 9999986
Done!