BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030563
MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVLKKPSSPSSD
DGVVPKIVVVPPDAELQRGKIYFLIPVPATTGDHQKSRSRSSSTKKKRREQSQSNANNNT
NNVNSISMTTNLLVSDQYLSEILSEKLSTQRDRRRGRVGVWRPHLESICESPSDV

High Scoring Gene Products

Symbol, full name Information P value
AT1G29195 protein from Arabidopsis thaliana 2.7e-36
AT2G30230 protein from Arabidopsis thaliana 3.9e-24
AT1G06980 protein from Arabidopsis thaliana 1.1e-21

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030563
        (175 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006153 - symbol:AT1G29195 "AT1G29195" speci...   318  2.7e-36   2
TAIR|locus:2060859 - symbol:AT2G30230 "AT2G30230" species...   249  3.9e-24   2
TAIR|locus:2007377 - symbol:AT1G06980 "AT1G06980" species...   253  1.1e-21   1


>TAIR|locus:505006153 [details] [associations]
            symbol:AT1G29195 "AT1G29195" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=IDA] EMBL:CP002684 GO:GO:0009507 EMBL:AC021043
            InterPro:IPR025322 Pfam:PF14009 HOGENOM:HOG000237531 EMBL:AY052248
            EMBL:AY060513 EMBL:AY087880 IPI:IPI00533956 PIR:D86414
            RefSeq:NP_564323.1 UniGene:At.15805 IntAct:Q9LP48 PRIDE:Q9LP48
            EnsemblPlants:AT1G29195.1 GeneID:839794 KEGG:ath:AT1G29195
            TAIR:At1g29195 InParanoid:Q9LP48 OMA:KETIRCC PhylomeDB:Q9LP48
            ProtClustDB:CLSN2715567 Genevestigator:Q9LP48 Uniprot:Q9LP48
        Length = 193

 Score = 318 (117.0 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
 Identities = 67/98 (68%), Positives = 73/98 (74%)

Query:     1 MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVL---XXXXXX 57
             MK TIRCCI+CILPCGALDVIRI+HSNG VEEISGTI A EIMKAHPKHVL         
Sbjct:     1 MKETIRCCIACILPCGALDVIRIVHSNGHVEEISGTITASEIMKAHPKHVLKKPSSPTSD 60

Query:    58 XXXXGVVP--KIVVVPPDAELQRGKIYFLIPVPATTGD 93
                  V+   KIV+VPP+AELQRGKIYFL+P  AT  D
Sbjct:    61 HDERDVISATKIVIVPPEAELQRGKIYFLMP--ATKSD 96

 Score = 89 (36.4 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
 Identities = 20/39 (51%), Positives = 25/39 (64%)

Query:   132 LLVSDQYLSEILSEKLSTQXXXXXXXXXXXXPHLESICE 170
             L+ SD+YL+EILSEK++TQ            PHLESI E
Sbjct:   150 LISSDRYLTEILSEKVATQKDRRKGRVGVWRPHLESISE 188


>TAIR|locus:2060859 [details] [associations]
            symbol:AT2G30230 "AT2G30230" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002685
            GenomeReviews:CT485783_GR EMBL:AC002338 EMBL:AC004165
            InterPro:IPR025322 Pfam:PF14009 EMBL:AY735593 IPI:IPI00535439
            PIR:T00577 RefSeq:NP_180582.1 UniGene:At.50978 PRIDE:O22919
            EnsemblPlants:AT2G30230.1 GeneID:817573 KEGG:ath:AT2G30230
            TAIR:At2g30230 eggNOG:NOG269368 HOGENOM:HOG000237531
            InParanoid:O22919 OMA:ENRHRRK PhylomeDB:O22919
            ProtClustDB:CLSN2683858 Genevestigator:O22919 Uniprot:O22919
        Length = 177

 Score = 249 (92.7 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
 Identities = 46/86 (53%), Positives = 65/86 (75%)

Query:     1 MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVLXXXXXXXXX 60
             M N++RCC++C+LPCGALD+IRI+H NG V+EI+  + A EI++A+P HVL         
Sbjct:     1 MGNSLRCCLACVLPCGALDLIRIVHLNGHVDEITSPMTAGEILQANPNHVLSKPCSQ--- 57

Query:    61 XGVVPKIVVVPPDAELQRGKIYFLIP 86
              GVV KI+++ P++EL+RG IYFLIP
Sbjct:    58 -GVVRKILILSPESELKRGSIYFLIP 82

 Score = 42 (19.8 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query:   132 LLVSDQYLSEI-LSEKLST--------QXXXXXXXXXXXXPHLESICE 170
             L + ++YL ++ LSEK+S+        +            PHL+SI E
Sbjct:   127 LTLCEKYLEDVMLSEKMSSAGKENRHRRKHSRSASVSTWRPHLDSITE 174


>TAIR|locus:2007377 [details] [associations]
            symbol:AT1G06980 "AT1G06980" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002684
            GenomeReviews:CT485782_GR EMBL:AC067971 InterPro:IPR025322
            Pfam:PF14009 HOGENOM:HOG000237531 ProtClustDB:CLSN2683858
            EMBL:AY088543 EMBL:BT024871 EMBL:AK117118 IPI:IPI00518476
            PIR:E86204 RefSeq:NP_563773.1 UniGene:At.42319
            EnsemblPlants:AT1G06980.1 GeneID:837208 KEGG:ath:AT1G06980
            TAIR:At1g06980 eggNOG:NOG269026 InParanoid:Q9LMJ2 OMA:SGHIEEY
            PhylomeDB:Q9LMJ2 Genevestigator:Q9LMJ2 Uniprot:Q9LMJ2
        Length = 169

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 48/86 (55%), Positives = 66/86 (76%)

Query:     1 MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVLXXXXXXXXX 60
             M N++RCC++C+LPCGALD+IRI+H NG VEEI+ +I A EI++A+P HVL         
Sbjct:     1 MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRSITAGEILQANPNHVLSKPCSQ--- 57

Query:    61 XGVVPKIVVVPPDAELQRGKIYFLIP 86
              GVV KI+++ P++EL+RG IYFLIP
Sbjct:    58 -GVVRKILILSPESELKRGSIYFLIP 82


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.413    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      175       116   0.00091  102 3  11 22  0.47    30
                                                     29  0.45    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  520 (55 KB)
  Total size of DFA:  112 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.45u 0.14s 9.59t   Elapsed:  00:00:00
  Total cpu time:  9.45u 0.14s 9.59t   Elapsed:  00:00:00
  Start:  Sat May 11 05:51:35 2013   End:  Sat May 11 05:51:35 2013

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