Query 030563
Match_columns 175
No_of_seqs 150 out of 411
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 15:37:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030563.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030563hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14009 DUF4228: Domain of un 100.0 6.1E-38 1.3E-42 245.5 13.0 163 1-170 1-181 (181)
2 PF02824 TGS: TGS domain; Int 68.3 8.9 0.00019 25.8 3.6 25 21-45 1-25 (60)
3 cd00565 ThiS ThiaminS ubiquiti 59.3 24 0.00052 23.6 4.5 23 24-46 2-24 (65)
4 cd03063 TRX_Fd_FDH_beta TRX-li 50.4 19 0.00042 26.7 3.0 32 10-43 40-71 (92)
5 PRK07440 hypothetical protein; 50.1 45 0.00097 23.1 4.7 24 22-45 5-28 (70)
6 TIGR01683 thiS thiamine biosyn 48.8 31 0.00068 23.0 3.7 23 24-46 1-23 (64)
7 PF04703 FaeA: FaeA-like prote 44.2 15 0.00032 25.5 1.5 27 136-162 33-59 (62)
8 PRK06437 hypothetical protein; 43.6 70 0.0015 21.9 4.8 53 24-87 5-63 (67)
9 PRK05659 sulfur carrier protei 43.3 25 0.00053 23.4 2.5 22 24-45 3-24 (66)
10 PRK08364 sulfur carrier protei 39.9 80 0.0017 21.6 4.7 53 24-87 7-66 (70)
11 PRK08053 sulfur carrier protei 37.6 99 0.0021 20.8 4.8 22 24-45 3-24 (66)
12 cd01668 TGS_RelA_SpoT TGS_RelA 37.1 54 0.0012 20.7 3.3 24 22-45 2-25 (60)
13 PF10813 DUF2733: Protein of u 35.6 14 0.00031 22.8 0.3 10 1-10 1-10 (32)
14 TIGR03746 conj_TIGR03746 integ 32.3 28 0.00061 29.7 1.6 30 23-52 147-176 (202)
15 PRK06944 sulfur carrier protei 32.2 45 0.00098 22.0 2.4 23 24-46 3-25 (65)
16 PF00197 Kunitz_legume: Trypsi 32.0 40 0.00087 27.3 2.5 19 73-91 7-25 (176)
17 KOG4224 Armadillo repeat prote 31.8 19 0.0004 34.1 0.5 11 1-11 1-11 (550)
18 cd00265 MADS_MEF2_like MEF2 (m 30.5 68 0.0015 22.7 3.2 32 15-47 38-69 (77)
19 cd00178 STI Soybean trypsin in 29.4 40 0.00086 27.4 2.0 18 73-90 7-24 (172)
20 PRK05863 sulfur carrier protei 27.5 65 0.0014 21.7 2.5 22 24-45 3-24 (65)
21 PF11211 DUF2997: Protein of u 23.9 53 0.0011 21.6 1.5 12 23-34 4-15 (48)
22 PRK06083 sulfur carrier protei 23.7 79 0.0017 22.9 2.5 23 23-45 20-42 (84)
23 COG2895 CysN GTPases - Sulfate 23.3 53 0.0011 30.9 1.8 75 12-87 258-338 (431)
24 cd01667 TGS_ThrRS_N TGS _ThrRS 22.4 1.6E+02 0.0034 17.8 3.5 25 22-46 2-26 (61)
25 PRK00994 F420-dependent methyl 21.9 1.4E+02 0.0031 26.5 4.2 61 18-94 61-124 (277)
26 smart00452 STI Soybean trypsin 21.4 64 0.0014 26.2 1.8 17 73-89 6-22 (172)
27 PRK07696 sulfur carrier protei 20.7 1E+02 0.0022 21.0 2.5 22 24-45 3-25 (67)
28 cd01616 TGS The TGS domain, na 20.1 1.8E+02 0.0038 17.3 3.3 25 22-46 2-26 (60)
No 1
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=100.00 E-value=6.1e-38 Score=245.45 Aligned_cols=163 Identities=30% Similarity=0.521 Sum_probs=113.6
Q ss_pred CCCcccccccccCCCCCCceeEEEccCCcEEEecCCCcHHHHHHhCCCcEEeCCCCCCCCCCCCcccccCCCCCcccCCC
Q 030563 1 MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVLKKPSSPSSDDGVVPKIVVVPPDAELQRGK 80 (175)
Q Consensus 1 MGN~isCc~~c~l~cgA~d~~rVVh~dG~Vee~~~PvtAaeVM~~~PgH~V~~s~s~~~~~~~~~ri~~L~pDeeL~~G~ 80 (175)
|||+++||.+ +++...+|||||+||+|++|+.||+|+|||++||+||||+++.+ .+++++.+|+||++|++|+
T Consensus 1 MGn~~~~~~~---~~~~~~~vkvv~~~G~v~~~~~pv~a~evm~~~P~h~v~~~~~~----~~~~~~~~l~~d~~L~~G~ 73 (181)
T PF14009_consen 1 MGNCVSCCLA---SSSSAATVKVVHPDGKVEEFKRPVTAAEVMLENPGHFVCDSDSF----RFGRRIKPLPPDEELQPGQ 73 (181)
T ss_pred CCCccccccc---ccCCCceEEEEcCCCcEEEeCCCcCHHHHHHHCCCCEEeccccc----cCCCcccCCCccCeecCCC
Confidence 9999999886 56778999999999999999999999999999999999999987 8899999999999999999
Q ss_pred eEEEeeCCCCCccccccccccccccccccccc--cccCCCCC-C-Cccccccc--ccccchhhhHHHHhhhhh-------
Q 030563 81 IYFLIPVPATTGDHQKSRSRSSSTKKKRREQS--QSNANNNT-N-NVNSISMT--TNLLVSDQYLSEILSEKL------- 147 (175)
Q Consensus 81 IYfLLP~~~~~~~k~~~~~~~~~~~~~~~~~~--~~~~~~~~-~-~~~~~~~~--~~~~~~~~~l~~~~~e~~------- 147 (175)
||||||++.++..................... ...+.... . ......+. ..+...++.|.+++++..
T Consensus 74 ~Y~llP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rvki~isk~el~~~l~~~s~~~~~~~ 153 (181)
T PF14009_consen 74 IYFLLPMSRLQSVLSASDMASLASSASSASSSSSARKSSSRPFSRSRSSNGGVVRVKIVISKEELEELLSEGSDEEMLSE 153 (181)
T ss_pred EEEEEEccccCcccccchhcccccchhhccccccccccccccccccccccCcccccccccCHHHHHHHHhccccchhhhh
Confidence 99999999988653322221110000000000 00000000 0 00001111 234556778888876432
Q ss_pred -----cccccCCCCCceeccCccceecc
Q 030563 148 -----STQRDRRRGRVGVWRPHLESICE 170 (175)
Q Consensus 148 -----~~~r~~~~~r~~~wrp~l~si~e 170 (175)
..+..++..+...|||.||||.|
T Consensus 154 ~~~~~~~~~~~~~~~~~~WrP~LesI~E 181 (181)
T PF14009_consen 154 SCRRPRRRSSRRGSRSRSWRPALESIPE 181 (181)
T ss_pred hhccccccccccCCCCCCccCCCCCcCc
Confidence 12233567778899999999998
No 2
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=68.27 E-value=8.9 Score=25.76 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=22.5
Q ss_pred eEEEccCCcEEEecCCCcHHHHHHh
Q 030563 21 IRIIHSNGRVEEISGTIKAREIMKA 45 (175)
Q Consensus 21 ~rVVh~dG~Vee~~~PvtAaeVM~~ 45 (175)
|+|..|||++.+|....|+.|+-..
T Consensus 1 I~v~lpdG~~~~~~~g~T~~d~A~~ 25 (60)
T PF02824_consen 1 IRVYLPDGSIKELPEGSTVLDVAYS 25 (60)
T ss_dssp EEEEETTSCEEEEETTBBHHHHHHH
T ss_pred CEEECCCCCeeeCCCCCCHHHHHHH
Confidence 5788899999999999999999864
No 3
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=59.28 E-value=24 Score=23.63 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.1
Q ss_pred EccCCcEEEecCCCcHHHHHHhC
Q 030563 24 IHSNGRVEEISGTIKAREIMKAH 46 (175)
Q Consensus 24 Vh~dG~Vee~~~PvtAaeVM~~~ 46 (175)
|..||+..++..+.++.+|+...
T Consensus 2 i~iNg~~~~~~~~~tv~~ll~~l 24 (65)
T cd00565 2 ITVNGEPREVEEGATLAELLEEL 24 (65)
T ss_pred EEECCeEEEcCCCCCHHHHHHHc
Confidence 56799999999999999999754
No 4
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=50.35 E-value=19 Score=26.66 Aligned_cols=32 Identities=9% Similarity=0.103 Sum_probs=23.6
Q ss_pred cccCCCCCCceeEEEccCCcEEEecCCCcHHHHH
Q 030563 10 SCILPCGALDVIRIIHSNGRVEEISGTIKAREIM 43 (175)
Q Consensus 10 ~c~l~cgA~d~~rVVh~dG~Vee~~~PvtAaeVM 43 (175)
-|...|...-.+.|++++|+ -||..|+..+|=
T Consensus 40 GC~G~C~~ePlV~V~~p~g~--v~Y~~V~~edv~ 71 (92)
T cd03063 40 GSRGMYWLEPLVEVETPGGR--VAYGPVTPADVA 71 (92)
T ss_pred cCceecCCCCEEEEEeCCCc--EEEEeCCHHHHH
Confidence 36677886666777789987 688888866643
No 5
>PRK07440 hypothetical protein; Provisional
Probab=50.12 E-value=45 Score=23.12 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=21.0
Q ss_pred EEEccCCcEEEecCCCcHHHHHHh
Q 030563 22 RIIHSNGRVEEISGTIKAREIMKA 45 (175)
Q Consensus 22 rVVh~dG~Vee~~~PvtAaeVM~~ 45 (175)
..|..||+..++..++++.+++.+
T Consensus 5 m~i~vNG~~~~~~~~~tl~~lL~~ 28 (70)
T PRK07440 5 ITLQVNGETRTCSSGTSLPDLLQQ 28 (70)
T ss_pred eEEEECCEEEEcCCCCCHHHHHHH
Confidence 346789999999999999999975
No 6
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=48.79 E-value=31 Score=23.05 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=19.9
Q ss_pred EccCCcEEEecCCCcHHHHHHhC
Q 030563 24 IHSNGRVEEISGTIKAREIMKAH 46 (175)
Q Consensus 24 Vh~dG~Vee~~~PvtAaeVM~~~ 46 (175)
|..||+..++..+++++|++...
T Consensus 1 i~iNg~~~~~~~~~tv~~ll~~l 23 (64)
T TIGR01683 1 ITVNGEPVEVEDGLTLAALLESL 23 (64)
T ss_pred CEECCeEEEcCCCCcHHHHHHHc
Confidence 35799999999999999999754
No 7
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=44.21 E-value=15 Score=25.48 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=20.9
Q ss_pred hhhHHHHhhhhhcccccCCCCCceecc
Q 030563 136 DQYLSEILSEKLSTQRDRRRGRVGVWR 162 (175)
Q Consensus 136 ~~~l~~~~~e~~~~~r~~~~~r~~~wr 162 (175)
.+||..+-+|++-.+..-++|..+.|+
T Consensus 33 R~yL~~Le~eG~V~~~~~~rG~~~~W~ 59 (62)
T PF04703_consen 33 RYYLEKLEKEGKVERSPVRRGKSTYWR 59 (62)
T ss_dssp HHHHHHHHHCTSEEEES-SSSSS-EEE
T ss_pred HHHHHHHHHCCCEEEecCCCCcceeee
Confidence 689999999999877666777778997
No 8
>PRK06437 hypothetical protein; Provisional
Probab=43.56 E-value=70 Score=21.90 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=31.8
Q ss_pred EccCC---cEEEecCCCcHHHHHHhC---CCcEEeCCCCCCCCCCCCcccccCCCCCcccCCCeEEEeeC
Q 030563 24 IHSNG---RVEEISGTIKAREIMKAH---PKHVLKKPSSPSSDDGVVPKIVVVPPDAELQRGKIYFLIPV 87 (175)
Q Consensus 24 Vh~dG---~Vee~~~PvtAaeVM~~~---PgH~V~~s~s~~~~~~~~~ri~~L~pDeeL~~G~IYfLLP~ 87 (175)
|..|| +..++..+.|++||+.+. |..++.--. -.+++++..|+.|--.-++|+
T Consensus 5 ~~v~g~~~~~~~i~~~~tv~dLL~~Lgi~~~~vaV~vN-----------g~iv~~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 5 IRVKGHINKTIEIDHELTVNDIIKDLGLDEEEYVVIVN-----------GSPVLEDHNVKKEDDVLILEV 63 (67)
T ss_pred EEecCCcceEEEcCCCCcHHHHHHHcCCCCccEEEEEC-----------CEECCCceEcCCCCEEEEEec
Confidence 44567 557777889999999842 332221111 124557888888755555543
No 9
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=43.32 E-value=25 Score=23.44 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=20.1
Q ss_pred EccCCcEEEecCCCcHHHHHHh
Q 030563 24 IHSNGRVEEISGTIKAREIMKA 45 (175)
Q Consensus 24 Vh~dG~Vee~~~PvtAaeVM~~ 45 (175)
|..||+..++..++|+++++..
T Consensus 3 i~vNG~~~~~~~~~tl~~lL~~ 24 (66)
T PRK05659 3 IQLNGEPRELPDGESVAALLAR 24 (66)
T ss_pred EEECCeEEEcCCCCCHHHHHHh
Confidence 6789999999999999999975
No 10
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=39.95 E-value=80 Score=21.61 Aligned_cols=53 Identities=25% Similarity=0.312 Sum_probs=32.3
Q ss_pred EccCCc----EEEecCCCcHHHHHHhC---CCcEEeCCCCCCCCCCCCcccccCCCCCcccCCCeEEEeeC
Q 030563 24 IHSNGR----VEEISGTIKAREIMKAH---PKHVLKKPSSPSSDDGVVPKIVVVPPDAELQRGKIYFLIPV 87 (175)
Q Consensus 24 Vh~dG~----Vee~~~PvtAaeVM~~~---PgH~V~~s~s~~~~~~~~~ri~~L~pDeeL~~G~IYfLLP~ 87 (175)
|..||+ ..++....|++|++.+. +..++.--. -.++++|..|+.|--.-++|.
T Consensus 7 v~vng~~~~~~~~~~~~~tv~~ll~~l~~~~~~v~v~vN-----------g~iv~~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 7 VKVIGRGIEKEIEWRKGMKVADILRAVGFNTESAIAKVN-----------GKVALEDDPVKDGDYVEVIPV 66 (70)
T ss_pred EEEeccccceEEEcCCCCcHHHHHHHcCCCCccEEEEEC-----------CEECCCCcCcCCCCEEEEEcc
Confidence 345777 55667789999999753 222211111 123467888888876666664
No 11
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=37.57 E-value=99 Score=20.79 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=19.8
Q ss_pred EccCCcEEEecCCCcHHHHHHh
Q 030563 24 IHSNGRVEEISGTIKAREIMKA 45 (175)
Q Consensus 24 Vh~dG~Vee~~~PvtAaeVM~~ 45 (175)
|..||+..++..++++++++..
T Consensus 3 i~vNg~~~~~~~~~tl~~ll~~ 24 (66)
T PRK08053 3 ILFNDQPMQCAAGQTVHELLEQ 24 (66)
T ss_pred EEECCeEEEcCCCCCHHHHHHH
Confidence 5679999999999999999974
No 12
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=37.11 E-value=54 Score=20.65 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=20.7
Q ss_pred EEEccCCcEEEecCCCcHHHHHHh
Q 030563 22 RIIHSNGRVEEISGTIKAREIMKA 45 (175)
Q Consensus 22 rVVh~dG~Vee~~~PvtAaeVM~~ 45 (175)
-|..+||...+|..++++++++..
T Consensus 2 ~~~~~~g~~~~~~~~~t~~~~~~~ 25 (60)
T cd01668 2 YVFTPKGEIIELPAGATVLDFAYA 25 (60)
T ss_pred EEECCCCCEEEcCCCCCHHHHHHH
Confidence 356789999999999999998864
No 13
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=35.57 E-value=14 Score=22.77 Aligned_cols=10 Identities=20% Similarity=0.457 Sum_probs=8.8
Q ss_pred CCCccccccc
Q 030563 1 MKNTIRCCIS 10 (175)
Q Consensus 1 MGN~isCc~~ 10 (175)
||+.++||..
T Consensus 1 MG~~~s~Ckr 10 (32)
T PF10813_consen 1 MGSLLSMCKR 10 (32)
T ss_pred Ccceeeeeec
Confidence 9999998876
No 14
>TIGR03746 conj_TIGR03746 integrating conjugative element protein, PFL_4703 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. The function is unknown.
Probab=32.31 E-value=28 Score=29.68 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=28.1
Q ss_pred EEccCCcEEEecCCCcHHHHHHhCCCcEEe
Q 030563 23 IIHSNGRVEEISGTIKAREIMKAHPKHVLK 52 (175)
Q Consensus 23 VVh~dG~Vee~~~PvtAaeVM~~~PgH~V~ 52 (175)
+|+.|..+.|+..+..+++++-.||=++|.
T Consensus 147 ~V~LDl~~~E~~~~e~VK~~~vRYpL~VVR 176 (202)
T TIGR03746 147 TVNLDLSVDEYYGGEPVKRALVRYPLRVVR 176 (202)
T ss_pred EEEEEEEEEeeeCCcchhhhhcccceEEEE
Confidence 788899999999999999999999999983
No 15
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=32.23 E-value=45 Score=22.00 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=20.0
Q ss_pred EccCCcEEEecCCCcHHHHHHhC
Q 030563 24 IHSNGRVEEISGTIKAREIMKAH 46 (175)
Q Consensus 24 Vh~dG~Vee~~~PvtAaeVM~~~ 46 (175)
|..||+..++...++++|++...
T Consensus 3 i~vNg~~~~~~~~~tl~~ll~~l 25 (65)
T PRK06944 3 IQLNQQTLSLPDGATVADALAAY 25 (65)
T ss_pred EEECCEEEECCCCCcHHHHHHhh
Confidence 56799999999999999999753
No 16
>PF00197 Kunitz_legume: Trypsin and protease inhibitor; InterPro: IPR002160 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The Kunitz-type soybean trypsin inhibitor (STI) family consists mainly of proteinase inhibitors from Leguminosae seeds []. They belong to MEROPS inhibitor family I3, clan IC. They exhibit proteinase inhibitory activity against serine proteinases; trypsin (MEROPS peptidase family S1, IPR001254 from INTERPRO) and subtilisin (MEROPS peptidase family S8, IPR000209 from INTERPRO), thiol proteinases (MEROPS peptidase family C1, IPR000668 from INTERPRO) and aspartic proteinases (MEROPS peptidase family A1, IPR001461 from INTERPRO) []. Inhibitors from cereals are active against subtilisin and endogenous alpha-amylases, while some also inhibit tissue plasminogen activator. The inhibitors are usually specific for either trypsin or chymotrypsin, and some are effective against both. They are thought to protect the seeds against consumption by animal predators, while at the same time existing as seed storage proteins themselves - all the actively inhibitory members contain 2 disulphide bridges. The existence of a member with no inhibitory activity, winged bean albumin 1, suggests that the inhibitors may have evolved from seed storage proteins. Proteins from the Kunitz family contain from 170 to 200 amino acid residues and one or two intra-chain disulphide bonds. The best conserved region is found in their N-terminal section. The crystal structures of soybean trypsin inhibitor (STI), trypsin inhibitor DE-3 from the Kaffir tree Erythrina caffra (ETI) [] and the bifunctional proteinase K/alpha-amylase inhibitor from wheat (PK13) have been solved, showing them to share the same 12-stranded beta-sheet structure as those of interleukin-1 and heparin-binding growth factors []. The beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel. Despite the structural similarity, STI shows no interleukin-1 bioactivity, presumably as a result of their primary sequence disparities. The active inhibitory site containing the scissile bond is located in the loop between beta-strands 4 and 5 in STI and ETI. The STIs belong to a superfamily that also contains the interleukin-1 proteins, heparin binding growth factors (HBGF) and histactophilin, all of which have very similar structures, but share no sequence similarity with the STI family.; GO: 0004866 endopeptidase inhibitor activity; PDB: 3TC2_B 3S8J_A 3S8K_A 1TIE_A 2GZB_A 3E8L_C 2IWT_B 3BX1_C 1AVA_D 3IIR_A ....
Probab=31.98 E-value=40 Score=27.32 Aligned_cols=19 Identities=21% Similarity=0.534 Sum_probs=15.6
Q ss_pred CCcccCCCeEEEeeCCCCC
Q 030563 73 DAELQRGKIYFLIPVPATT 91 (175)
Q Consensus 73 DeeL~~G~IYfLLP~~~~~ 91 (175)
.++|++|.-||++|+..-.
T Consensus 7 G~~l~~g~~YyI~p~~~~~ 25 (176)
T PF00197_consen 7 GNPLRNGGEYYILPAIRGA 25 (176)
T ss_dssp SCB-BTTSEEEEEESSTGC
T ss_pred CCCCcCCCCEEEEeCccCC
Confidence 6789999999999987754
No 17
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.75 E-value=19 Score=34.13 Aligned_cols=11 Identities=45% Similarity=0.960 Sum_probs=9.5
Q ss_pred CCCcccccccc
Q 030563 1 MKNTIRCCISC 11 (175)
Q Consensus 1 MGN~isCc~~c 11 (175)
||||++||-..
T Consensus 1 MG~c~sc~~~S 11 (550)
T KOG4224|consen 1 MGNCLSCCESS 11 (550)
T ss_pred CCccccccccc
Confidence 99999999664
No 18
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=30.47 E-value=68 Score=22.69 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=23.1
Q ss_pred CCCCceeEEEccCCcEEEecCCCcHHHHHHhCC
Q 030563 15 CGALDVIRIIHSNGRVEEISGTIKAREIMKAHP 47 (175)
Q Consensus 15 cgA~d~~rVVh~dG~Vee~~~PvtAaeVM~~~P 47 (175)
|++.-.+-|..++|++..|..|- .-+|+..|=
T Consensus 38 c~~~v~lvv~sp~gk~~~f~s~s-~~~vl~ry~ 69 (77)
T cd00265 38 CDAEVALIIFSSSGKLYEFSSPS-MEKIIERYQ 69 (77)
T ss_pred cCCceeEEEEcCCCceEEecCCC-HHHHHHHHH
Confidence 67544445667899999998875 488887653
No 19
>cd00178 STI Soybean trypsin inhibitor (Kunitz) family of protease inhibitors. Inhibit proteases by binding with high affinity to their active sites. Trefoil fold, common to interleukins and fibroblast growth factors.
Probab=29.39 E-value=40 Score=27.39 Aligned_cols=18 Identities=22% Similarity=0.558 Sum_probs=15.9
Q ss_pred CCcccCCCeEEEeeCCCC
Q 030563 73 DAELQRGKIYFLIPVPAT 90 (175)
Q Consensus 73 DeeL~~G~IYfLLP~~~~ 90 (175)
.++|+.|.-||++|+..-
T Consensus 7 G~~l~~g~~YyI~p~~~g 24 (172)
T cd00178 7 GNPLRNGGRYYILPAIRG 24 (172)
T ss_pred CCCCcCCCeEEEEEceeC
Confidence 689999999999999753
No 20
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=27.55 E-value=65 Score=21.74 Aligned_cols=22 Identities=9% Similarity=0.194 Sum_probs=19.9
Q ss_pred EccCCcEEEecCCCcHHHHHHh
Q 030563 24 IHSNGRVEEISGTIKAREIMKA 45 (175)
Q Consensus 24 Vh~dG~Vee~~~PvtAaeVM~~ 45 (175)
|..||...++..+.++.+++.+
T Consensus 3 i~vNG~~~~~~~~~tl~~ll~~ 24 (65)
T PRK05863 3 VVVNEEQVEVDEQTTVAALLDS 24 (65)
T ss_pred EEECCEEEEcCCCCcHHHHHHH
Confidence 5679999999999999999975
No 21
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=23.92 E-value=53 Score=21.60 Aligned_cols=12 Identities=50% Similarity=0.612 Sum_probs=9.5
Q ss_pred EEccCCcEEEec
Q 030563 23 IIHSNGRVEEIS 34 (175)
Q Consensus 23 VVh~dG~Vee~~ 34 (175)
+|++||+|++=-
T Consensus 4 ~I~~dG~V~~~v 15 (48)
T PF11211_consen 4 TIYPDGRVEEEV 15 (48)
T ss_pred EECCCcEEEEEE
Confidence 578999998754
No 22
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=23.71 E-value=79 Score=22.92 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=20.9
Q ss_pred EEccCCcEEEecCCCcHHHHHHh
Q 030563 23 IIHSNGRVEEISGTIKAREIMKA 45 (175)
Q Consensus 23 VVh~dG~Vee~~~PvtAaeVM~~ 45 (175)
-|..||+..++..++++++++..
T Consensus 20 ~I~VNG~~~~~~~~~tl~~LL~~ 42 (84)
T PRK06083 20 TISINDQSIQVDISSSLAQIIAQ 42 (84)
T ss_pred EEEECCeEEEcCCCCcHHHHHHH
Confidence 47899999999999999999974
No 23
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=23.28 E-value=53 Score=30.86 Aligned_cols=75 Identities=20% Similarity=0.315 Sum_probs=42.5
Q ss_pred cCCCCC-CceeEEEccCCcEEEecCCCcHHHHHHh----CCCcEEeCCCCCCC-CCCCCcccccCCCCCcccCCCeEEEe
Q 030563 12 ILPCGA-LDVIRIIHSNGRVEEISGTIKAREIMKA----HPKHVLKKPSSPSS-DDGVVPKIVVVPPDAELQRGKIYFLI 85 (175)
Q Consensus 12 ~l~cgA-~d~~rVVh~dG~Vee~~~PvtAaeVM~~----~PgH~V~~s~s~~~-~~~~~~ri~~L~pDeeL~~G~IYfLL 85 (175)
++|+|- ..+.+|+.+||.+.+......+.=+|.+ .-|-+|+..+.... .+.+.-.+. -=.++.|+||+-|.|=
T Consensus 258 vlPsG~~s~V~~Ivt~dg~~~~A~aG~aVtl~L~deidisRGd~i~~~~~~~~~~~~f~A~vv-Wm~~~pl~pGr~Y~lK 336 (431)
T COG2895 258 VLPSGKTSRVKRIVTFDGELAQASAGEAVTLVLADEIDISRGDLIVAADAPPAVADAFDADVV-WMDEEPLLPGRSYDLK 336 (431)
T ss_pred EccCCCeeeEEEEeccCCchhhccCCceEEEEEcceeecccCcEEEccCCCcchhhhcceeEE-EecCCCCCCCceEEEE
Confidence 356664 3444788888888877666544444433 33556666665421 112222221 1247789999999884
Q ss_pred eC
Q 030563 86 PV 87 (175)
Q Consensus 86 P~ 87 (175)
-.
T Consensus 337 ~~ 338 (431)
T COG2895 337 IA 338 (431)
T ss_pred ec
Confidence 43
No 24
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=22.38 E-value=1.6e+02 Score=17.78 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=20.9
Q ss_pred EEEccCCcEEEecCCCcHHHHHHhC
Q 030563 22 RIIHSNGRVEEISGTIKAREIMKAH 46 (175)
Q Consensus 22 rVVh~dG~Vee~~~PvtAaeVM~~~ 46 (175)
+|..++|...++..+++..++..+.
T Consensus 2 ~i~~~~~~~~~~~~~~t~~~~~~~~ 26 (61)
T cd01667 2 KITLPDGSVKEFPKGTTPLDIAKSI 26 (61)
T ss_pred EEEcCCCCEEEeCCCCCHHHHHHHH
Confidence 4667889999999999999988764
No 25
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=21.89 E-value=1.4e+02 Score=26.49 Aligned_cols=61 Identities=28% Similarity=0.425 Sum_probs=42.3
Q ss_pred CceeEEEccCCcEEEecCCCcHHHHHHhC--CCcEEeCCCCCCCCCCCCcccccCCCCCccc-CCCeEEEeeCCCCCccc
Q 030563 18 LDVIRIIHSNGRVEEISGTIKAREIMKAH--PKHVLKKPSSPSSDDGVVPKIVVVPPDAELQ-RGKIYFLIPVPATTGDH 94 (175)
Q Consensus 18 ~d~~rVVh~dG~Vee~~~PvtAaeVM~~~--PgH~V~~s~s~~~~~~~~~ri~~L~pDeeL~-~G~IYfLLP~~~~~~~k 94 (175)
.|.+-||-||+- ..+|..|.|++++. |--+|.+.... + .+++|+ -|-=|++++....-..+
T Consensus 61 pDf~i~isPN~a---~PGP~~ARE~l~~~~iP~IvI~D~p~~--------K-----~~d~l~~~g~GYIivk~DpMIGAr 124 (277)
T PRK00994 61 PDFVIVISPNPA---APGPKKAREILKAAGIPCIVIGDAPGK--------K-----VKDAMEEQGLGYIIVKADPMIGAR 124 (277)
T ss_pred CCEEEEECCCCC---CCCchHHHHHHHhcCCCEEEEcCCCcc--------c-----hHHHHHhcCCcEEEEecCccccch
Confidence 466778888875 47899999999976 77677665432 1 135555 56669999987765433
No 26
>smart00452 STI Soybean trypsin inhibitor (Kunitz) family of protease inhibitors.
Probab=21.43 E-value=64 Score=26.20 Aligned_cols=17 Identities=24% Similarity=0.647 Sum_probs=15.3
Q ss_pred CCcccCCCeEEEeeCCC
Q 030563 73 DAELQRGKIYFLIPVPA 89 (175)
Q Consensus 73 DeeL~~G~IYfLLP~~~ 89 (175)
.++|+.|.=||++|+..
T Consensus 6 G~~l~~G~~YyI~p~~~ 22 (172)
T smart00452 6 GNPLRNGGTYYILPAIR 22 (172)
T ss_pred CCCCcCCCcEEEEEccc
Confidence 67899999999999975
No 27
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=20.65 E-value=1e+02 Score=21.00 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=18.8
Q ss_pred EccCCcEEEecCC-CcHHHHHHh
Q 030563 24 IHSNGRVEEISGT-IKAREIMKA 45 (175)
Q Consensus 24 Vh~dG~Vee~~~P-vtAaeVM~~ 45 (175)
|..||+..++..+ .+++|++..
T Consensus 3 I~vNG~~~~~~~~~~tv~~lL~~ 25 (67)
T PRK07696 3 LKINGNQIEVPESVKTVAELLTH 25 (67)
T ss_pred EEECCEEEEcCCCcccHHHHHHH
Confidence 5679999999987 789999974
No 28
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=20.14 E-value=1.8e+02 Score=17.30 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=20.7
Q ss_pred EEEccCCcEEEecCCCcHHHHHHhC
Q 030563 22 RIIHSNGRVEEISGTIKAREIMKAH 46 (175)
Q Consensus 22 rVVh~dG~Vee~~~PvtAaeVM~~~ 46 (175)
.++..||...++....++.++..+.
T Consensus 2 ~~~~~~~~~~~~~~g~t~~~~~~~~ 26 (60)
T cd01616 2 IIFTPDGSAVELPKGATAMDFALKI 26 (60)
T ss_pred EEECCCCCEEEcCCCCCHHHHHHHH
Confidence 4677889999999999999988654
Done!