BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030564
(175 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QOU|A Chain A, Cen (Centroradialis) Protein From Antirrhinum
pdb|1QOU|B Chain B, Cen (Centroradialis) Protein From Antirrhinum
Length = 181
Score = 279 bits (714), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 133/175 (76%), Positives = 151/175 (86%), Gaps = 4/175 (2%)
Query: 5 SDALVLGRVVGEVIDYFTPSVKMTITYSSIK--QQVYNGHEMFPSQVTQKPKVEVLGGDM 62
SD LV+GRV+G+V+D+FT +VKM++ Y+S + VYNGHE+FPS VT P+VEV GGDM
Sbjct: 7 SDPLVIGRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDM 66
Query: 63 RSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDASFGKEVVNYEIPRPNIGIHRFV 122
RSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTD+SFGKEVV+YE+PRPNIGIHRFV
Sbjct: 67 RSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIHRFV 126
Query: 123 FLLFKQKRRQTEMSVP--ASRDRFNTRKFAEENDLGLPVAAVFFNAQRETAARRR 175
FLLFKQK+R M P RD FNTRKF +EN+LGLPVAAVFFN QRETAARRR
Sbjct: 127 FLLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVAAVFFNCQRETAARRR 181
>pdb|1WKO|A Chain A, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
pdb|1WKO|B Chain B, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
Length = 180
Score = 264 bits (674), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 121/174 (69%), Positives = 152/174 (87%), Gaps = 2/174 (1%)
Query: 2 AKMSDALVLGRVVGEVIDYFTPSVKMTITYSSIKQQVYNGHEMFPSQVTQKPKVEVLGGD 61
++ + L++GRVVG+V+D+FTP+ KM ++Y+ K+QV NGHE+FPS V+ KP+VE+ GGD
Sbjct: 9 TRVIEPLIMGRVVGDVLDFFTPTTKMNVSYN--KKQVSNGHELFPSSVSSKPRVEIHGGD 66
Query: 62 MRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDASFGKEVVNYEIPRPNIGIHRF 121
+RSFFTL+M DPDVPGPSDP+L+EHLHWIVT+IPGTTDA+FGKEVV+YE+PRP+IGIHRF
Sbjct: 67 LRSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRF 126
Query: 122 VFLLFKQKRRQTEMSVPASRDRFNTRKFAEENDLGLPVAAVFFNAQRETAARRR 175
VF+LF+QK+R+ SRD FNTRKFA E DLGLPVAAVFFNAQRETAAR+R
Sbjct: 127 VFVLFRQKQRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 180
>pdb|3AXY|A Chain A, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|B Chain B, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|G Chain G, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|H Chain H, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
Length = 170
Score = 204 bits (520), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/164 (60%), Positives = 125/164 (76%), Gaps = 3/164 (1%)
Query: 6 DALVLGRVVGEVIDYFTPSVKMTITYSSIKQQVYNGHEMFPSQVTQKPKVEVLGGDMRSF 65
D LV+GRVVG+V+D F S + +TY S + V NG E+ PS VT +P+VEV G DMR+F
Sbjct: 9 DPLVVGRVVGDVLDAFVRSTNLKVTYGS--KTVSNGLELKPSMVTHQPRVEVGGNDMRTF 66
Query: 66 FTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDASFGKEVVNYEIPRPNIGIHRFVFLL 125
+TL+M DPD P PSDP LRE+LHW+VTDIPGTT ASFG+EV++YE PRP +GIHR VF+L
Sbjct: 67 YTLVMVDPDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMSYESPRPTMGIHRLVFVL 126
Query: 126 FKQKRRQTEMSVPASRDRFNTRKFAEENDLGLPVAAVFFNAQRE 169
F+Q RQT + P R FNT+ FAE +LG PVAAV+FN+QRE
Sbjct: 127 FQQLGRQT-VYAPGWRQNFNTKDFAELYNLGSPVAAVYFNSQRE 169
>pdb|1WKP|A Chain A, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|B Chain B, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|C Chain C, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|D Chain D, Flowering Locus T (Ft) From Arabidopsis Thaliana
Length = 171
Score = 197 bits (501), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 93/168 (55%), Positives = 126/168 (75%), Gaps = 3/168 (1%)
Query: 3 KMSDALVLGRVVGEVIDYFTPSVKMTITYSSIKQQVYNGHEMFPSQVTQKPKVEVLGGDM 62
+ D L++ RVVG+V+D F S+ + +TY +++V NG + PSQV KP+VE+ G D+
Sbjct: 7 NIRDPLIVSRVVGDVLDPFNRSITLKVTYG--QREVTNGLNLRPSQVQNKPRVEIGGEDL 64
Query: 63 RSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDASFGKEVVNYEIPRPNIGIHRFV 122
R+F+TL+M DPDVP PS+P+LRE+LHW+VTDIP TT +FG E+V+YE P P GIHR V
Sbjct: 65 RNFYTLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVSYENPSPTAGIHRVV 124
Query: 123 FLLFKQKRRQTEMSVPASRDRFNTRKFAEENDLGLPVAAVFFNAQRET 170
F+LF+Q RQT + P R FNTR+FAE +LGLPVAAVF+N+QRE+
Sbjct: 125 FILFRQLGRQT-VYAPGWRQNFNTREFAEIYNLGLPVAAVFYNSQRES 171
>pdb|2JYZ|A Chain A, Cg7054 Solution Structure
Length = 179
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 11/166 (6%)
Query: 13 VVGEVIDYFTPSVKMTITYSSIKQQVYNGHEMFPSQVTQKPKVEVLGGDMRS-FFTLIMT 71
+V +V+D P+ + + Y +V G+E+ P+QV +P V G + +S TL+M
Sbjct: 4 IVPDVLD-AVPAGTIKVIYGD-DLEVKQGNELTPTQVKDQPIVSWSGLEGKSNLLTLLMV 61
Query: 72 DPDVPGPSDPYLREHLHWIVTDIPGTT-DASFGKEVVNY--EIPRPNIGIHRFVFLLFKQ 128
DPD P DP RE LHW V +IPG+ + S G + +Y P + G+HR++FLL++Q
Sbjct: 62 DPDAPTRQDPKYREILHWSVVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLLYRQ 121
Query: 129 KRRQTEMSVPASRDR-----FNTRKFAEENDLGLPVAAVFFNAQRE 169
+ + E ++ R FN R FA ++ LG P+AA ++ AQ +
Sbjct: 122 ENKIEETPTISNTTRTGRLNFNARDFAAKHGLGEPIAANYYQAQYD 167
>pdb|1KN3|A Chain A, Murine Pebp-2 (Phosphatidylethanolamine-Binding Protein-2)
Length = 183
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 23 PSVKMTITYSSIKQQVYNGHEMFPSQVTQKP-KVEVLGGDMRSFFTLIMTDPDVPGPSDP 81
P + +TY+ + + G + P+QV +P + G D +TLI+TDPD P P
Sbjct: 17 PQHLLRVTYTEAEVEEL-GQVLTPTQVKHRPGSISWDGLDPGKLYTLILTDPDAPSRKKP 75
Query: 82 YLREHLHWIVTDIPGTTDASFGKEVVNY--EIPRPNIGIHRFVFLLFKQKR--RQTEMSV 137
RE H++V ++ G D S G + +Y P G+HR+V+L+++Q + R E +
Sbjct: 76 VYREWHHFLVVNMKG-NDISSGNVLSDYVGSGPPKGTGLHRYVWLVYQQDKPLRCDEPIL 134
Query: 138 PA----SRDRFNTRKFAEENDLGLPVAAVFFNAQRET 170
R +F T F ++ LG PVA + A+ ++
Sbjct: 135 TNRSGDHRGKFKTAAFRKKYHLGAPVAGTCYQAEWDS 171
>pdb|2IQX|A Chain A, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|B Chain B, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|C Chain C, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
Length = 187
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 75/140 (53%), Gaps = 10/140 (7%)
Query: 41 GHEMFPSQVTQKPK-VEVLGGDMRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTD 99
G + P+QV +P + G D +TL++TDPD P DP RE H++V ++ G D
Sbjct: 38 GKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPKFREWHHFLVVNMKG-ND 96
Query: 100 ASFGKEVVNY--EIPRPNIGIHRFVFLLFKQKR----RQTEMSVPA--SRDRFNTRKFAE 151
S G + Y P + G+HR+V+L+++Q++ + +S + +R +F +F +
Sbjct: 97 ISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSNKSGDNRGKFKVEEFRK 156
Query: 152 ENDLGLPVAAVFFNAQRETA 171
+ LG PVA F A+ + +
Sbjct: 157 KYHLGAPVAGTCFQAEWDDS 176
>pdb|2IQY|A Chain A, Rat Phosphatidylethanolamine-Binding Protein
Length = 190
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 10/140 (7%)
Query: 41 GHEMFPSQVTQKPK-VEVLGGDMRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTD 99
G + P+QV +P + G D +TL++TDPD P DP RE H++V ++ G D
Sbjct: 41 GKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPKFREWHHFLVVNMKG-ND 99
Query: 100 ASFGKEVVNY--EIPRPNIGIHRFVFLLFKQKR----RQTEMSVPA--SRDRFNTRKFAE 151
S G + Y P + G+HR+V+L+++Q++ + +S + +R +F F +
Sbjct: 100 ISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSNKSGDNRGKFKVESFRK 159
Query: 152 ENDLGLPVAAVFFNAQRETA 171
+ LG PVA F A+ + +
Sbjct: 160 KYHLGAPVAGTCFQAEWDDS 179
>pdb|1BD9|A Chain A, Human Phosphatidylethanolamine Binding Protein
pdb|1BD9|B Chain B, Human Phosphatidylethanolamine Binding Protein
pdb|1BEH|A Chain A, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|1BEH|B Chain B, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|2QYQ|A Chain A, Human Raf Kinase Inhibitor Protein (Rkip) In Complex With
O- Phosphotyrosine
pdb|2L7W|A Chain A, Solution Structure Of The Human Raf-1 Kinase Inhibitor
Protein
Length = 187
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 10/138 (7%)
Query: 41 GHEMFPSQVTQKP-KVEVLGGDMRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTD 99
G + P+QV +P + G D +TL++TDPD P DP RE H++V ++ G D
Sbjct: 38 GKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKG-ND 96
Query: 100 ASFGKEVVNY--EIPRPNIGIHRFVFLLFKQKR-RQTEMSVPASRD-----RFNTRKFAE 151
S G + +Y P G+HR+V+L+++Q R + + + ++R +F F +
Sbjct: 97 ISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRK 156
Query: 152 ENDLGLPVAAVFFNAQRE 169
+ +L PVA + A+ +
Sbjct: 157 KYELRAPVAGTCYQAEWD 174
>pdb|1B7A|A Chain A, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
pdb|1B7A|B Chain B, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
Length = 186
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 10/138 (7%)
Query: 41 GHEMFPSQVTQKP-KVEVLGGDMRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTD 99
G + P+QV +P + G D +TL++TDPD P DP RE H++V ++ G +
Sbjct: 37 GKVLTPTQVKNRPTSITWDGLDPGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKG-NN 95
Query: 100 ASFGKEVVNY--EIPRPNIGIHRFVFLLFKQ----KRRQTEMSVPAS--RDRFNTRKFAE 151
S G + +Y P G+HR+V+L+++Q K + +S + R +F F +
Sbjct: 96 ISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILSNRSGDHRGKFKVASFRK 155
Query: 152 ENDLGLPVAAVFFNAQRE 169
+ +LG PVA + A+ +
Sbjct: 156 KYELGAPVAGTCYQAEWD 173
>pdb|1A44|A Chain A, Phosphatidylethanolamine Binding Protein From Calf Brain
Length = 185
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 10/138 (7%)
Query: 41 GHEMFPSQVTQKP-KVEVLGGDMRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTD 99
G + P+QV +P + G D +TL++TDPD P DP RE H++V ++ G +
Sbjct: 37 GKVLTPTQVKNRPTSITWDGLDPGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKG-NN 95
Query: 100 ASFGKEVVNY--EIPRPNIGIHRFVFLLFKQ----KRRQTEMSVPAS--RDRFNTRKFAE 151
S G + +Y P G+HR+V+L+++Q K + +S + R +F F +
Sbjct: 96 ISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILSNRSGDHRGKFKVASFRK 155
Query: 152 ENDLGLPVAAVFFNAQRE 169
+ +LG PVA + A+ +
Sbjct: 156 KYELGAPVAGTCYQAEWD 173
>pdb|1WPX|B Chain B, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
Length = 220
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 29/131 (22%)
Query: 65 FFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDAS---------FGKE--------VV 107
FTL+MTDPD P +D E H + D+ +A+ F E ++
Sbjct: 89 LFTLVMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLI 148
Query: 108 NYEIPRP--NIGIHRFVFLLFKQKRRQTEMSVPASRDRFN---------TRKFAEENDLG 156
Y P P G HR+VFLL+KQ + +DR N K+A+EN+L
Sbjct: 149 EYMGPAPPKGSGPHRYVFLLYKQPKGVDSSKFSKIKDRPNWGYGTPATGVGKWAKENNLQ 208
Query: 157 LPVAAVFFNAQ 167
L VA+ FF A+
Sbjct: 209 L-VASNFFYAE 218
>pdb|2R77|A Chain A, Crystal Structure Of Phosphatidylethanolamine-Binding
Protein, Pfl0955c, From Plasmodium Falciparum
Length = 205
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 66 FTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDASFGKE-----VVNYEIP--RPNIGI 118
F L M DPD P P +E++HW+V+ I T + G + ++ Y P + G+
Sbjct: 86 FVLFMVDPDYPSRLRPDGKEYIHWVVSGIK-TKELIKGTQKNCVTILPYVGPSIKKGTGL 144
Query: 119 HR--FVFLLFKQKRRQTEMSVPASR-DRFNTR 147
HR F+ L K++ + +P + +++ TR
Sbjct: 145 HRISFIISLIKEEDKDNITGLPHYKGEKYITR 176
>pdb|2GZQ|A Chain A, Phosphatidylethanolamine-Binding Protein From Plasmodium
Vivax
Length = 200
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 66 FTLIMTDPDVPGPSDPYLREHLHWIVTDI------PGTTDASFGKEVVNYEIP--RPNIG 117
+ L DPD P P R+++HW V+ I GT ++ Y P + G
Sbjct: 79 YILFXIDPDFPSRRRPDGRDYVHWAVSGIKSKELVKGTDKNCI--TLLPYVGPSIKKGTG 136
Query: 118 IHR--FVFLLFKQKRRQTEMSVPASR 141
+HR F+ L K++ + VP R
Sbjct: 137 LHRISFILSLVKEENKGNVTGVPLYR 162
>pdb|2A8L|A Chain A, Crystal Structure Of Human Taspase1 (T234a Mutant)
pdb|2A8L|B Chain B, Crystal Structure Of Human Taspase1 (T234a Mutant)
Length = 420
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 106 VVNYEIPR--PNIGIHRFVFLLFKQKRRQTEMSVPASRDRFNTRK----FAEENDLGL-- 157
V++ IP PNI RF FK+ +R+ E++ D +K +END G
Sbjct: 174 AVDHGIPSCPPNIMTTRFSLAAFKRNKRKLELAERVDTDFMQLKKRRQSSEKENDSGTLD 233
Query: 158 PVAAVFFNAQRETAA 172
V AV + + AA
Sbjct: 234 AVGAVVVDHEGNVAA 248
>pdb|2A8M|A Chain A, Crystal Structure Of Human Taspase1 (T234s Mutant)
pdb|2A8M|B Chain B, Crystal Structure Of Human Taspase1 (T234s Mutant)
Length = 420
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 106 VVNYEIPR--PNIGIHRFVFLLFKQKRRQTEMSVPASRDRFNTRK----FAEENDLGL-- 157
V++ IP PNI RF FK+ +R+ E++ D +K +END G
Sbjct: 174 AVDHGIPSCPPNIMTTRFSLAAFKRNKRKLELAERVDTDFMQLKKRRQSSEKENDSGTLD 233
Query: 158 PVAAVFFNAQRETAA 172
V AV + + AA
Sbjct: 234 SVGAVVVDHEGNVAA 248
>pdb|2A8I|A Chain A, Crystal Structure Of Human Taspase1
pdb|2A8I|B Chain B, Crystal Structure Of Human Taspase1
Length = 420
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 106 VVNYEIPR--PNIGIHRFVFLLFKQKRRQTEMSVPASRDRFNTRK----FAEENDLGL-- 157
V++ IP PNI RF FK+ +R+ E++ D +K +END G
Sbjct: 174 AVDHGIPSCPPNIXTTRFSLAAFKRNKRKLELAERVDTDFXQLKKRRQSSEKENDSGTLD 233
Query: 158 PVAAVFFNAQRETAA 172
V AV + + AA
Sbjct: 234 TVGAVVVDHEGNVAA 248
>pdb|2A8J|A Chain A, Crystal Structure Of Human Taspase1 (Acivated Form)
pdb|2A8J|B Chain B, Crystal Structure Of Human Taspase1 (Acivated Form)
Length = 420
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 106 VVNYEIPR--PNIGIHRFVFLLFKQKRRQTEMSVPASRDRFNTRK----FAEENDLGL-- 157
V++ IP PNI RF FK+ +R+ E++ D +K +END G
Sbjct: 174 AVDHGIPSCPPNIMTTRFSLAAFKRNKRKLELAERVDTDFMQLKKRRQSSEKENDSGTLD 233
Query: 158 PVAAVFFNAQRETAA 172
V AV + + AA
Sbjct: 234 TVGAVVVDHEGNVAA 248
>pdb|4EDL|A Chain A, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|B Chain B, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|C Chain C, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|D Chain D, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|E Chain E, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|F Chain F, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDM|A Chain A, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDM|B Chain B, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDN|A Chain A, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|B Chain B, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|C Chain C, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|D Chain D, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|E Chain E, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|F Chain F, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|G Chain G, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|H Chain H, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|I Chain I, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|J Chain J, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
Length = 133
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 2 AKMSDALVLGRVVGEVIDYFTPSVKMTITYSSIKQQVYN---GHEMFPSQVTQKPKV--- 55
+ +D + L ++G + DYF P +T S Q+V+N E+ +KPK
Sbjct: 49 TQFADGVYLVLLMGLLEDYFVPLHHFYLTPESFDQKVHNVSFAFELMLDGGLKKPKARPE 108
Query: 56 EVLGGDMRS 64
+V+ D++S
Sbjct: 109 DVVNLDLKS 117
>pdb|3NNQ|A Chain A, Crystal Structure Of The N-Terminal Domain Of Moloney
Murine Leukemia Virus Integrase, Northeast Structural
Genomics Consortium Target Or3
pdb|3NNQ|B Chain B, Crystal Structure Of The N-Terminal Domain Of Moloney
Murine Leukemia Virus Integrase, Northeast Structural
Genomics Consortium Target Or3
Length = 114
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 79 SDPYLREHLHWIVTDIPGTT 98
S PY EH H+ VTDI T
Sbjct: 5 SSPYTSEHFHYTVTDIKDLT 24
>pdb|2WPG|A Chain A, Sucrose Hydrolase
Length = 637
Score = 27.3 bits (59), Expect = 4.8, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 60 GDMRSF-------FTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDA 100
GD R F F + DVP P D H W V D GT DA
Sbjct: 570 GDARLFALTRGDSFLAVHNFSDVPLPVDLTQTGHALWAVLDTDGTGDA 617
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,278,846
Number of Sequences: 62578
Number of extensions: 215982
Number of successful extensions: 443
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 21
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)