Query 030564
Match_columns 175
No_of_seqs 114 out of 1299
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 15:38:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030564.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030564hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00169 CETS family protein; 100.0 1E-53 2.3E-58 330.0 18.6 172 1-175 2-173 (175)
2 KOG3346 Phosphatidylethanolami 100.0 8E-54 1.7E-58 330.6 15.1 174 1-175 1-178 (185)
3 cd00866 PEBP_euk PhosphatidylE 100.0 3.9E-39 8.5E-44 244.3 16.2 140 26-166 2-154 (154)
4 PF01161 PBP: Phosphatidyletha 100.0 2.7E-29 5.9E-34 188.6 12.7 130 25-165 2-146 (146)
5 cd00457 PEBP PhosphatidylEthan 99.9 6.7E-25 1.5E-29 167.5 12.2 123 37-165 6-158 (159)
6 cd00865 PEBP_bact_arch Phospha 99.7 7.2E-17 1.6E-21 122.1 11.0 94 50-154 25-137 (150)
7 PRK10257 putative kinase inhib 99.6 1.2E-15 2.6E-20 116.3 10.4 80 51-135 30-131 (158)
8 PRK09818 putative kinase inhib 99.6 1.6E-15 3.6E-20 117.9 10.6 95 36-135 27-154 (183)
9 TIGR00481 Raf kinase inhibitor 99.6 3.8E-15 8.2E-20 111.6 11.4 94 50-154 13-128 (141)
10 COG1881 Phospholipid-binding p 99.6 1.8E-15 3.9E-20 116.7 9.0 112 36-157 28-164 (174)
11 KOG3586 TBX1 and related T-box 43.1 39 0.00084 29.6 4.1 53 39-94 95-154 (437)
12 PRK04243 50S ribosomal protein 21.9 1.2E+02 0.0026 24.0 3.3 29 63-94 127-155 (196)
No 1
>PLN00169 CETS family protein; Provisional
Probab=100.00 E-value=1e-53 Score=330.02 Aligned_cols=172 Identities=58% Similarity=0.977 Sum_probs=160.9
Q ss_pred CcccchhhhcCCcccccCCCCCCCeEEEEEECCCCeeecCCceeCCcccCCCCeEEEecCCCCcEEEEEEEcCCCCCCCC
Q 030564 1 MAKMSDALVLGRVVGEVIDYFTPSVKMTITYSSIKQQVYNGHEMFPSQVTQKPKVEVLGGDMRSFFTLIMTDPDVPGPSD 80 (175)
Q Consensus 1 ~~~~~~~l~~~~iipdvl~~f~P~~~L~V~f~~~~~~v~~G~~l~~~~~~~~P~i~~~~~~~~~~ytlvmvDpD~p~~~~ 80 (175)
|.+++++|.+++||||||+.|.|+..|.|.|++ ..|.+|+.|++++++++|+|+|.+.+.+++|||+|+|||+|++++
T Consensus 2 ~~~~~~~l~~~~iipdvid~f~P~~~L~V~y~s--~~V~~G~~l~p~~t~~~P~i~~~~~~~~~~ytlim~DpDaP~~~~ 79 (175)
T PLN00169 2 SPRDRDPLVVGRVVGDVLDPFTRSISLRVTYGS--REVNNGCELKPSQVVNQPRVDIGGEDLRTFYTLVMVDPDAPSPSN 79 (175)
T ss_pred CcccccchhhCCcCCcccCCcCCceEEEEEECC--cCcCCcCCCCHHHhccCCEEEEccCCCCceeEEEEECCCCCCCCC
Confidence 789999999999999999999999999999988 789999999999999999999988776899999999999999999
Q ss_pred CCCceEEEEEEEccCCCcCCCCCeeeeeecCCCCCCCCCcEEEEEeeeCCCccccCCCCCCCCcCHHHHHHHhCCCCceE
Q 030564 81 PYLREHLHWIVTDIPGTTDASFGKEVVNYEIPRPNIGIHRFVFLLFKQKRRQTEMSVPASRDRFNTRKFAEENDLGLPVA 160 (175)
Q Consensus 81 ~~~~~~lHwlv~ni~~~~~~~~g~~~~~Y~~P~P~~g~HRYvflL~~Q~~~~~~~~~~~~R~~F~~~~F~~~~~L~~Pva 160 (175)
+++++||||+++||+++.....|+++++|+||.|++|.|||+|+||+|++.+... .+..|.+||+++|++++||+.|||
T Consensus 80 ~~~~~~~HW~v~nip~~~~~~~g~~~~~Y~~P~Pp~G~HRYvflly~Q~~~~~~~-~~~~R~~F~~~~Fa~~~~L~~PvA 158 (175)
T PLN00169 80 PNLREYLHWLVTDIPATTGATFGQEVVCYESPRPTAGIHRFVFVLFRQLGRQTVY-APGWRQNFNTRDFAELYNLGSPVA 158 (175)
T ss_pred CCcccEEEEEEeCCccccccccCccceeecCCCCCCCceeEEEEEEEcCCCcccC-CcccCCCcCHHHHHHHhCCCCceE
Confidence 9999999999999998755567999999999999999999999999999887654 467899999999999999999999
Q ss_pred EEEEEEeeCCCCCCC
Q 030564 161 AVFFNAQRETAARRR 175 (175)
Q Consensus 161 ~~~f~~~~d~~~~~~ 175 (175)
||||+++|++..++|
T Consensus 159 ~nfF~a~~~~~~~~~ 173 (175)
T PLN00169 159 AVYFNCQRESGSGGR 173 (175)
T ss_pred EEEEEEecCCcCCcc
Confidence 999999999988775
No 2
>KOG3346 consensus Phosphatidylethanolamine binding protein [General function prediction only]
Probab=100.00 E-value=8e-54 Score=330.64 Aligned_cols=174 Identities=48% Similarity=0.771 Sum_probs=164.0
Q ss_pred CcccchhhhcCCcccccCCCCCCCeEEEEEECCCCeeecCCceeCCcccCCCCeEEEecC-CCCcEEEEEEEcCCCCCCC
Q 030564 1 MAKMSDALVLGRVVGEVIDYFTPSVKMTITYSSIKQQVYNGHEMFPSQVTQKPKVEVLGG-DMRSFFTLIMTDPDVPGPS 79 (175)
Q Consensus 1 ~~~~~~~l~~~~iipdvl~~f~P~~~L~V~f~~~~~~v~~G~~l~~~~~~~~P~i~~~~~-~~~~~ytlvmvDpD~p~~~ 79 (175)
|....+.+.+++|++|+|+.+.|++.|+|.|+++ ..|++|+.|++++++++|+|+|.+. +.+++|||+|+|||||+++
T Consensus 1 ~~~~~~~~~~~~iv~Dvl~~~~p~~~l~V~y~~~-~~v~~G~~l~pt~~~~~P~v~~~~~a~~~~~yTLvm~DPDaPsr~ 79 (185)
T KOG3346|consen 1 MSDIRDPLNKHRIVPDVLDDFEPSVKLNVTYNSD-IVVENGNELTPTQVKNRPIVSWDGFADPGSLYTLVMTDPDAPSRS 79 (185)
T ss_pred CcchhhhhhccCcchhhhccCCCceEEEEEeCCC-eeecCCCEeCchhhccCCeEEEcCcCCCCCeEEEEEeCCCCCCCC
Confidence 6678899999999999999999999999999997 8999999999999999999999985 7789999999999999999
Q ss_pred CCCCceEEEEEEEccCCCcCCCCCeeeeeecCCCC--CCCCCcEEEEEeeeCCCccccC-CCCCCCCcCHHHHHHHhCCC
Q 030564 80 DPYLREHLHWIVTDIPGTTDASFGKEVVNYEIPRP--NIGIHRFVFLLFKQKRRQTEMS-VPASRDRFNTRKFAEENDLG 156 (175)
Q Consensus 80 ~~~~~~~lHwlv~ni~~~~~~~~g~~~~~Y~~P~P--~~g~HRYvflL~~Q~~~~~~~~-~~~~R~~F~~~~F~~~~~L~ 156 (175)
+|++++|||||++||+++.++++|++++.|+||.| |+|.|||+|+||+|+.+..... .+..|.+|++++|+++++|+
T Consensus 80 ~p~~rE~lHWlV~nIPg~~~~~~G~~i~~Y~~P~Pp~~tG~HRyVfll~rQ~~~~~~~~~~~~~R~~F~~~~F~~~~~lg 159 (185)
T KOG3346|consen 80 DPKFREWLHWLVTNIPGTDGISKGQEISEYLGPGPPKGTGLHRYVFLLYRQPGRLDSDEPSPLSRGNFNTRKFAKKYELG 159 (185)
T ss_pred CCcceeEEEEEEEeecCCccccCCeEeeeeeCCCCCCCCCceEEEEEEEEcCCccccccCCCCcccceeHHHHHHHhccC
Confidence 99999999999999999977999999999999999 7999999999999999988754 46899999999999999999
Q ss_pred CceEEEEEEEeeCCCCCCC
Q 030564 157 LPVAAVFFNAQRETAARRR 175 (175)
Q Consensus 157 ~Pva~~~f~~~~d~~~~~~ 175 (175)
.|||++||+++||+..++|
T Consensus 160 ~PvA~~~f~aq~d~~~~~~ 178 (185)
T KOG3346|consen 160 TPVAGNFFQAQWDDYVPKL 178 (185)
T ss_pred CchhhheehhhcchhhHHH
Confidence 9999999999999987653
No 3
>cd00866 PEBP_euk PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in eukaryotes. Members here include those in plants such as Arabidopsis thaliana FLOWERING LOCUS (FT) and TERMINAL FLOWER1 (FT1) which function as a promoter and a repressor of the floral transitions, respectively as well as the mammalian Raf kinase inhibitory protein (RKIP) which inhibits MAP kinase (Raf-MEK-ERK), G protein-coupled receptor (GPCR) kinase and NFkappaB signaling cascades. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer).
Probab=100.00 E-value=3.9e-39 Score=244.26 Aligned_cols=140 Identities=43% Similarity=0.726 Sum_probs=128.3
Q ss_pred EEEEEECCCCeeecCCceeCCcccCCCCeEEEecCC-CCcEEEEEEEcCCCCCCCCCCCceEEEEEEEccCCCcC----C
Q 030564 26 KMTITYSSIKQQVYNGHEMFPSQVTQKPKVEVLGGD-MRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTD----A 100 (175)
Q Consensus 26 ~L~V~f~~~~~~v~~G~~l~~~~~~~~P~i~~~~~~-~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~ni~~~~~----~ 100 (175)
.|.|.|+++ ..+.+|+.|++++++.+|+|+|.... .+++|+|+|+|||+|.+.++.+++|||||++||+++.. .
T Consensus 2 ~l~v~y~~~-~~v~~G~~l~~~~~~~~P~i~~~~~~~~~~~y~lvm~DpD~p~~~~~~~~~~lHwl~~ni~~~~~~~~~~ 80 (154)
T cd00866 2 DLTVSYGSS-GVVTPGNLLTPSETQKAPTVSFSSEDPPDKLYTLVMVDPDAPSRDDPKFREWLHWLVTNIPGSDTTTGLV 80 (154)
T ss_pred eEEEEECCC-cCcCCCCCCCHHHhCcCCeEEEecCCCCCCeEEEEEECCCCCCCCCCCCCCEEEEEEeCcCCcccccccc
Confidence 689999985 78999999999999999999999886 68999999999999999999999999999999998743 4
Q ss_pred CCCeeeeeecCCCC--CCCCCcEEEEEeeeCCCccccC------CCCCCCCcCHHHHHHHhCCCCceEEEEEEE
Q 030564 101 SFGKEVVNYEIPRP--NIGIHRFVFLLFKQKRRQTEMS------VPASRDRFNTRKFAEENDLGLPVAAVFFNA 166 (175)
Q Consensus 101 ~~g~~~~~Y~~P~P--~~g~HRYvflL~~Q~~~~~~~~------~~~~R~~F~~~~F~~~~~L~~Pva~~~f~~ 166 (175)
+.|..+++|+||+| |+|.|||+|+||+|+..+.... ....|.+||+++|++++||+.|||+|||++
T Consensus 81 ~~~~~~~~Y~~P~Pp~g~g~HRY~fll~~q~~~~~~~~~~~~~~~~~~r~~F~~~~F~~~~~L~~pva~~~f~~ 154 (154)
T cd00866 81 SKGEVLVPYLGPGPPKGTGPHRYVFLLFKQPGGLDFPESKLPPTSGLGRRGFDVREFAKKNGLGLPVAANFFQV 154 (154)
T ss_pred CCCCCcceeeCCCCCCCCCCccEEEEEEEeCCccCccccccccCCccccCCcCHHHHHHHhCCCCcEEEEEEeC
Confidence 56889999999999 7899999999999999988764 257899999999999999999999999985
No 4
>PF01161 PBP: Phosphatidylethanolamine-binding protein; InterPro: IPR008914 The PEBP (PhosphatidylEthanolamine-Binding Protein) family is a highly conserved group of proteins that have been identified in numerous tissues in a wide variety of organisms, including bacteria, yeast, nematodes, plants, drosophila and mammals. The various functions described for members of this family include lipid binding, neuronal development [], serine protease inhibition [], the control of the morphological switch between shoot growth and flower structures [], and the regulation of several signalling pathways such as the MAP kinase pathway [], and the NF-kappaB pathway []. The control of the latter two pathways involves the PEBP protein RKIP, which interacts with MEK and Raf-1 to inhibit the MAP kinase pathway, and with TAK1, NIK, IKKalpha and IKKbeta to inhibit the NF-kappaB pathway. Other PEBP-like proteins that show strong structural homology to PEBP include Escherichia coli YBHB and YBCL, the Rattus norvegicus (Rat) neuropeptide HCNP, and Antirrhinum majus (Garden snapdragon) protein centroradialis (CEN). Structures have been determined for several members of the PEBP-like family, all of which show extensive fold conservation. The structure consists of a large central beta-sheet flanked by a smaller beta-sheet on one side, and an alpha helix on the other. Sequence alignments show two conserved central regions, CR1 and CR2, that form a consensus signature for the PEBP family. These two regions form part of the ligand-binding site, which can accommodate various anionic groups. The N- and C-terminal regions are the least conserved, and may be involved in interactions with different protein partners. The N-terminal residues 2-12 form the natural cleavage peptide HCNP involved in neuronal development. The C-terminal region is deleted in plant and bacterial PEBP homologues, and may help control accessibility to the active site. ; PDB: 1BD9_A 1BEH_A 2QYQ_A 2L7W_A 3AXY_A 2IQX_C 2IQY_A 1KN3_A 1FUX_A 1B7A_A ....
Probab=99.96 E-value=2.7e-29 Score=188.64 Aligned_cols=130 Identities=31% Similarity=0.585 Sum_probs=106.4
Q ss_pred eEEEEEECCCCeeecCCceeCCcc-cCCCCeEEEecCCCCcEEEEEEEcCCCCCCCCCCCceEEEEEEEccC--------
Q 030564 25 VKMTITYSSIKQQVYNGHEMFPSQ-VTQKPKVEVLGGDMRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIP-------- 95 (175)
Q Consensus 25 ~~L~V~f~~~~~~v~~G~~l~~~~-~~~~P~i~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~ni~-------- 95 (175)
..|.|.|.++ ..+.+|+.+++.. ++..|+ .+++|+|+|+|||+|++.+++.++|||||++||+
T Consensus 2 ~~L~v~f~~~-~~~~~G~~~sp~~~~~~~P~-------~~~~y~lim~D~D~P~~~~~~~~~~~Hwl~~ni~~~~~~~~~ 73 (146)
T PF01161_consen 2 GKLPVKFTGN-KSVCPGNNVSPPLSWQNAPT-------GTKSYTLIMVDPDAPSRENPSFGPFLHWLVTNIPSTELPEGS 73 (146)
T ss_dssp CEEEEEECTT-EECSTTEEEEGGGECSS-TC-------TTSEEEEEEEETTSSBTTSCTTTSEEEEEEEEEETSEE-TTS
T ss_pred cCcCceeEcc-cccCCCCCCCcCcccccCCC-------CCcEEEEEEECCCCCccccCCCCcEEEEEEcCCCCccCCCCC
Confidence 4799999543 8999999999999 889988 4789999999999999999999999999999999
Q ss_pred -CC-cCCC-CCeeeeeecCCCC--CCCCCcEEEEEeeeCCCccccCCCCCCCCcCHHHHHHHhCCCCc-eEEEEEE
Q 030564 96 -GT-TDAS-FGKEVVNYEIPRP--NIGIHRFVFLLFKQKRRQTEMSVPASRDRFNTRKFAEENDLGLP-VAAVFFN 165 (175)
Q Consensus 96 -~~-~~~~-~g~~~~~Y~~P~P--~~g~HRYvflL~~Q~~~~~~~~~~~~R~~F~~~~F~~~~~L~~P-va~~~f~ 165 (175)
.. ...+ .|..+++|.||+| |+|.|||+|+||+|+..+.+ ......+++++.+++++|+.+ +|++||+
T Consensus 74 ~~~~~~~~~~g~~~~~Y~~P~Pp~g~g~HrY~f~ly~q~~~~~l---~~~~~~~~~~~~~~~~~L~~~~l~~~y~r 146 (146)
T PF01161_consen 74 DGARQGINSSGQVIAPYLGPCPPKGSGPHRYVFLLYAQPSPLPL---SDGATKFDLREAFKGHGLGPASLAGNYFR 146 (146)
T ss_dssp STCETSBGGTSEEEES--SB-SSTTSSCEEEEEEEEEESSSSTS---GBSSTHHTHHHHHHHTTEESEESEEEEEE
T ss_pred CccEecccccCccccEEcCCcCcCcCCCceEEEEEEEcCCCCCC---CCCCCHHHHHHHHHcCCCCCceEEEEEEC
Confidence 10 0122 3677999999999 68899999999999996654 335556889999999999987 8999997
No 5
>cd00457 PEBP PhosphatidylEthanolamine-Binding Protein (PEBP) domain. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). A number of biological roles for members of the PEBP family include serine protease inhibition, membrane biogenesis, regulation of flowering plant stem architecture, and Raf-1 kinase inhibition. Although their overall structures are similar, the members of the PEBP family bind very different substrates including phospholipids, opioids, and hydrophobic odorant molecules as well as having different oligomerization states (monomer/dimer/tetramer).
Probab=99.92 E-value=6.7e-25 Score=167.52 Aligned_cols=123 Identities=28% Similarity=0.391 Sum_probs=98.9
Q ss_pred eecC-CceeCC----cccCCCCeEEEecCC-CCcEEEEEEEcCCCCCCCCCCCceEEEEEEEccCCCcCC----------
Q 030564 37 QVYN-GHEMFP----SQVTQKPKVEVLGGD-MRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDA---------- 100 (175)
Q Consensus 37 ~v~~-G~~l~~----~~~~~~P~i~~~~~~-~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~ni~~~~~~---------- 100 (175)
.+.. |+.|+. .....+|.|+|++.. .+++|+|+|+|||+|. .++|+||+++||+.+...
T Consensus 6 ~~~~~g~~lp~~~~~~g~~~sP~l~w~~~p~~t~s~ali~~DpDap~-----~~~~~HWvv~nIp~~~~~~~~~~~~~~~ 80 (159)
T cd00457 6 EVGPSGSVLPPEYSFEGVGRFPSLSWDGPPPDVKEYVLVMEDPDAPL-----GRPIVHGLVYGIPANKTSLSNDDFVVTD 80 (159)
T ss_pred CcCCCCCccChhhccCCCCcCCceEecCCCCCCeEEEEEEECCCCCC-----CCCceEEEEeccCcccccccccccccCC
Confidence 3455 777777 666778999999886 5799999999999983 357999999999976311
Q ss_pred --CCCe----------eeeeecCCCC--CCCCCcEEEEEeeeCCCccccCCCCCCCCcCHHHHHHHhCCCCceEEEEEE
Q 030564 101 --SFGK----------EVVNYEIPRP--NIGIHRFVFLLFKQKRRQTEMSVPASRDRFNTRKFAEENDLGLPVAAVFFN 165 (175)
Q Consensus 101 --~~g~----------~~~~Y~~P~P--~~g~HRYvflL~~Q~~~~~~~~~~~~R~~F~~~~F~~~~~L~~Pva~~~f~ 165 (175)
..+. ....|.||+| |+|.|||+|+||+|+..+........+..|++.+|++.+.|+ ++|.++++
T Consensus 81 ~~~~~~~~~n~~g~~~~~~~Y~GP~PP~G~g~HrY~f~lyald~~~~~~~~~~~~~~~~~~~~~~~~vL~-~~a~~~~~ 158 (159)
T cd00457 81 NGKGGLQGGFKYGKNRGGTVYIGPRPPLGHGPHRYFFQVYALDEPLDRSKLGDGRTKFEVARFAEGNVLG-AVGEWVGQ 158 (159)
T ss_pred CCccceeccccccccCCCcCCcCCCCCCCCCCeeEEEEEEEecCccccccccCCCCHHHHHHHHHhCeee-EEEEEEEE
Confidence 1111 2349999999 678999999999999988764224689999999999999997 68999886
No 6
>cd00865 PEBP_bact_arch PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.
Probab=99.72 E-value=7.2e-17 Score=122.08 Aligned_cols=94 Identities=24% Similarity=0.356 Sum_probs=74.4
Q ss_pred CCCCeEEEecCC-CCcEEEEEEEcCCCCCCCCCCCceEEEEEEEccCCCc-CCCCC----------------eeeeeecC
Q 030564 50 TQKPKVEVLGGD-MRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTT-DASFG----------------KEVVNYEI 111 (175)
Q Consensus 50 ~~~P~i~~~~~~-~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~ni~~~~-~~~~g----------------~~~~~Y~~ 111 (175)
..+|.|+|.+.. .+++|+|+|+|+|+|. ..+|+||+++||+.+. .+..| .....|.|
T Consensus 25 ~~SP~l~w~~~p~~t~s~al~m~D~Dap~-----~~~~~HW~~~nIp~~~~~i~~g~~~~~~~~~~~~g~n~~~~~~Y~g 99 (150)
T cd00865 25 NVSPPLSWSGVPAGTKSLALIVEDPDAPT-----GGGFVHWVVWNIPADTTELPEGASRGALPAGAVQGRNDFGEAGYGG 99 (150)
T ss_pred CcCCCeEEcCCCCCCeEEEEEEEcCCCCC-----CCCEEEEEEeccCcccccccCCcccccCCCCCeEeecCCCCCeecC
Confidence 578999999885 5799999999999983 3679999999999862 22211 25789999
Q ss_pred CCC-CCCCCcEEEEEeeeCCCccccCCCCCCCCcCHHHHHHHhC
Q 030564 112 PRP-NIGIHRFVFLLFKQKRRQTEMSVPASRDRFNTRKFAEEND 154 (175)
Q Consensus 112 P~P-~~g~HRYvflL~~Q~~~~~~~~~~~~R~~F~~~~F~~~~~ 154 (175)
|+| ..+.|||+|.||+++..+.. ...+...+++++..
T Consensus 100 P~Pp~~~~HrY~f~vyAld~~l~~------~~~~~~~~l~~ai~ 137 (150)
T cd00865 100 PCPPDGGPHRYVFTVYALDVPLLL------PPGATRAELLFAMK 137 (150)
T ss_pred CCCcCCCceEEEEEEEEeCCccCC------CCCCCHHHHHHHHh
Confidence 999 55899999999999988765 25677777776643
No 7
>PRK10257 putative kinase inhibitor protein; Provisional
Probab=99.65 E-value=1.2e-15 Score=116.25 Aligned_cols=80 Identities=24% Similarity=0.383 Sum_probs=62.4
Q ss_pred CCCeEEEecCC-CCcEEEEEEEcCCCCCCCCCCCceEEEEEEEccCCCcC-C----C-------CCe-------eeeeec
Q 030564 51 QKPKVEVLGGD-MRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTD-A----S-------FGK-------EVVNYE 110 (175)
Q Consensus 51 ~~P~i~~~~~~-~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~ni~~~~~-~----~-------~g~-------~~~~Y~ 110 (175)
.+|.|+|.+.. .+++|+|+|.|||+|.. ..|+||++.||+++.. + . .|. ....|.
T Consensus 30 ~SP~L~w~~~P~~t~s~ali~~DpDap~~-----~~~~HWvv~nIP~~~~~l~eg~~~~~~~~p~g~~~g~n~~g~~gY~ 104 (158)
T PRK10257 30 ISPHLAWDDVPAGTKSFVVTCYDPDAPTG-----SGWWHWVVVNLPADTRVLPQGFGSGLVALPDGVLQTRTDFGKAGYG 104 (158)
T ss_pred CCceEEEcCCCCCceEEEEEEECCCCCCC-----CcEEEEEEEcCCCCcccccCCCCcccccCCCCceeccccCCCccCc
Confidence 48999999875 46999999999999864 3699999999997521 1 1 111 246899
Q ss_pred CCCCCCC-CCcEEEEEeeeC-CCcccc
Q 030564 111 IPRPNIG-IHRFVFLLFKQK-RRQTEM 135 (175)
Q Consensus 111 ~P~P~~g-~HRYvflL~~Q~-~~~~~~ 135 (175)
||+|+.| .|||+|.||+++ ..+.+.
T Consensus 105 GP~PP~g~~HrY~f~vyALd~~~L~l~ 131 (158)
T PRK10257 105 GAAPPKGETHRYIFTVHALDVERIDVD 131 (158)
T ss_pred CCCCccCCCceEEEEEEEecCcccCCC
Confidence 9999544 799999999999 467764
No 8
>PRK09818 putative kinase inhibitor; Provisional
Probab=99.64 E-value=1.6e-15 Score=117.92 Aligned_cols=95 Identities=22% Similarity=0.382 Sum_probs=71.1
Q ss_pred eeecCCceeCCccc---------CCCCeEEEecCC-CCcEEEEEEEcCCCCCCCCCCCceEEEEEEEccCCCcC-CC---
Q 030564 36 QQVYNGHEMFPSQV---------TQKPKVEVLGGD-MRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTD-AS--- 101 (175)
Q Consensus 36 ~~v~~G~~l~~~~~---------~~~P~i~~~~~~-~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~ni~~~~~-~~--- 101 (175)
..+..|..|+.+.+ ..+|.++|.+.. .+++|+|+|.|||+|.. ..|+||+++||+.+.. +.
T Consensus 27 ~~f~~G~~ip~~~~~~~~~~~G~n~SP~L~W~~~P~gtks~aLi~~DpDaP~g-----~~~~HWvv~nIP~~~~~l~eg~ 101 (183)
T PRK09818 27 NEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGAPEGTKSFAVTVYDPDAPTG-----SGWWHWTVANIPATVTYLPADA 101 (183)
T ss_pred cCccCcCCCCHHHcccccCCCCCCcceeEEEccCCCCcEEEEEEEECCCCCCC-----CcEEEEEEEcCCCCccccCCCC
Confidence 34567777775432 258999999875 46999999999999864 3699999999986521 10
Q ss_pred ---------CC-------eeeeeecCCCC--CCCCCcEEEEEeeeC-CCcccc
Q 030564 102 ---------FG-------KEVVNYEIPRP--NIGIHRFVFLLFKQK-RRQTEM 135 (175)
Q Consensus 102 ---------~g-------~~~~~Y~~P~P--~~g~HRYvflL~~Q~-~~~~~~ 135 (175)
.| -....|.||+| |.|.|||+|.||+.+ +.+.+.
T Consensus 102 ~~~~~~~~~~g~~~g~N~~g~~gY~GP~PP~G~g~HrY~F~vyALd~~~l~l~ 154 (183)
T PRK09818 102 GRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTDKIPVD 154 (183)
T ss_pred cccccccCCCCCEEeecCCCCCceECCCCccCCCCEEEEEEEEEecCcccCCC
Confidence 11 12458999999 677999999999998 456654
No 9
>TIGR00481 Raf kinase inhibitor-like protein, YbhB/YbcL family.
Probab=99.63 E-value=3.8e-15 Score=111.65 Aligned_cols=94 Identities=26% Similarity=0.389 Sum_probs=71.4
Q ss_pred CCCCeEEEecCC-CCcEEEEEEEcCCCCCCCCCCCceEEEEEEEccCCCc-C----CC-------CC--------eeeee
Q 030564 50 TQKPKVEVLGGD-MRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTT-D----AS-------FG--------KEVVN 108 (175)
Q Consensus 50 ~~~P~i~~~~~~-~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~ni~~~~-~----~~-------~g--------~~~~~ 108 (175)
..+|.|+|.+.. .+++|+|+|.|||+|... .|+||++.||+.+. . +. .| -....
T Consensus 13 n~SP~l~w~~~P~~t~s~al~~~D~Dap~~~-----~~~HWv~~nIp~~~~~l~e~~~~~~~~~~~g~~~~g~n~~g~~~ 87 (141)
T TIGR00481 13 NISPPLSWDGVPEGAKSLALTCIDPDAPTGC-----GWWHWVVVNIPADTTVLPENASSDDKRLPQGVPLQGRNDFGKSG 87 (141)
T ss_pred CCCcEEEEcCCCCCceEEEEEEECCCCCCCC-----CeEEEEEecCCCCcccccCCccccccccCCcceeEeeccCCCcc
Confidence 358999999874 468999999999998754 39999999999742 1 11 12 12568
Q ss_pred ecCCCCCCCCCcEEEEEeeeCCC-ccccCCCCCCCCcCHHHHHHHhC
Q 030564 109 YEIPRPNIGIHRFVFLLFKQKRR-QTEMSVPASRDRFNTRKFAEEND 154 (175)
Q Consensus 109 Y~~P~P~~g~HRYvflL~~Q~~~-~~~~~~~~~R~~F~~~~F~~~~~ 154 (175)
|.||+|+.|.|||+|.||+.+.. +.+. .++...+++++..
T Consensus 88 Y~GP~PP~g~HrY~f~vyALd~~~l~l~------~~~~~~~l~~ai~ 128 (141)
T TIGR00481 88 YIGPCPPKGDHRYLFTVYALDTEKLDLD------PGFSLADLGDAME 128 (141)
T ss_pred EeCCCCcCCCEEEEEEEEEecCCCCCCC------CCCCHHHHHHHHh
Confidence 99999966679999999999976 7653 2567777766543
No 10
>COG1881 Phospholipid-binding protein [General function prediction only]
Probab=99.62 E-value=1.8e-15 Score=116.73 Aligned_cols=112 Identities=22% Similarity=0.349 Sum_probs=78.9
Q ss_pred eeecCCceeCCccc----CCCCeEEEecCC-CCcEEEEEEEcCCCCCCCCCCCceEEEEEEEccCCCc-C-----CC---
Q 030564 36 QQVYNGHEMFPSQV----TQKPKVEVLGGD-MRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTT-D-----AS--- 101 (175)
Q Consensus 36 ~~v~~G~~l~~~~~----~~~P~i~~~~~~-~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~ni~~~~-~-----~~--- 101 (175)
..+..|+.++...+ ...|.++|++.. .+++|.|+|.|||||+ ...|+||+++||+... . ..
T Consensus 28 ~~f~~g~~ip~~~t~~g~~~sPpl~ws~~P~~tkS~AL~v~DpDAP~-----g~~~~HWvv~nIp~~~~~~~~~~~~~~~ 102 (174)
T COG1881 28 NAFADGAPIPDEYTCGGPNISPPLSWSGVPEGTKSFALTVDDPDAPT-----GGGWVHWVVANIPADVTELPEGSGPKSK 102 (174)
T ss_pred hhhhCCCccchhhhcCCCCcCCceeecCCCCCCeeEEEEEECCCCCC-----CCcEEEEEEEccCCcccccccccccccc
Confidence 46677888776653 578999999874 5799999999999997 3579999999999731 1 10
Q ss_pred C-------CeeeeeecCCCCCCCC-CcEEEEEeeeCCCccccCCCCCCCCcCHH---HHHHHhCCCC
Q 030564 102 F-------GKEVVNYEIPRPNIGI-HRFVFLLFKQKRRQTEMSVPASRDRFNTR---KFAEENDLGL 157 (175)
Q Consensus 102 ~-------g~~~~~Y~~P~P~~g~-HRYvflL~~Q~~~~~~~~~~~~R~~F~~~---~F~~~~~L~~ 157 (175)
. +-.-..|.||+|+.|. |||.|.||+++...... + .+|.-. +-++.|.|..
T Consensus 103 ~~~~qg~Nd~g~~~Y~Gp~PP~g~~HrY~f~vyALd~~~~~~--~---~g~~~~~~~~~~~~hil~~ 164 (174)
T COG1881 103 IGIVQGINDFGSRGYGGPCPPKGHGHRYYFTVYALDVELLLL--P---AGASGAELGKAMEGHILAQ 164 (174)
T ss_pred cceEEeeccccccCcccCCCCCCCCeEEEEEEEEcccccccC--C---CCCCHHHHHHHHHHHHHHH
Confidence 0 1233459999995555 99999999999865432 1 344433 3345555553
No 11
>KOG3586 consensus TBX1 and related T-box transcription factors [Transcription]
Probab=43.07 E-value=39 Score=29.60 Aligned_cols=53 Identities=26% Similarity=0.277 Sum_probs=32.0
Q ss_pred cCCcee--CCcccCCCCeEE--EecCCCCcEEEEEEEcCCCCCCCCCCCceEEE---EEEEcc
Q 030564 39 YNGHEM--FPSQVTQKPKVE--VLGGDMRSFFTLIMTDPDVPGPSDPYLREHLH---WIVTDI 94 (175)
Q Consensus 39 ~~G~~l--~~~~~~~~P~i~--~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lH---wlv~ni 94 (175)
..|.++ +++--..-|+|+ |.+.+..+.|.|+| |- -..++..|+...| |||+.=
T Consensus 95 ~lGTEMIITKsGRRMFPTvrV~~~GldP~a~Y~vlm-Dv--VPvD~KRYRYayH~S~WlvAGk 154 (437)
T KOG3586|consen 95 DLGTEMIITKSGRRMFPTVRVKFSGLDPMADYYVLM-DV--VPVDSKRYRYAYHSSSWLVAGK 154 (437)
T ss_pred hcCceEEEecccccccceEEEEEecCCcccceEEEE-eE--EecccceeeeeecccceeeecC
Confidence 445553 444446789965 55667778886655 32 2233445777766 999874
No 12
>PRK04243 50S ribosomal protein L15e; Validated
Probab=21.90 E-value=1.2e+02 Score=23.98 Aligned_cols=29 Identities=24% Similarity=0.641 Sum_probs=21.9
Q ss_pred CcEEEEEEEcCCCCCCCCCCCceEEEEEEEcc
Q 030564 63 RSFFTLIMTDPDVPGPSDPYLREHLHWIVTDI 94 (175)
Q Consensus 63 ~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~ni 94 (175)
-+.|-+|||||.-|.-.+ ..-+.|+....
T Consensus 127 yK~fEVIlVDp~H~aIr~---Dp~~nWI~~~~ 155 (196)
T PRK04243 127 YKWYEVILVDPHHPAIKN---DPDLNWICDKS 155 (196)
T ss_pred cccEEEEEecCCCcchhc---Ccccceecccc
Confidence 378999999999887654 35688888543
Done!