BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030565
(175 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
pdb|3BZB|B Chain B, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
Length = 281
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 24/120 (20%)
Query: 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEI----EDNI----AYNSTTNG 56
E I + ELG+G G ++I A + +DY D EI E NI A + ++
Sbjct: 76 ELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSET 135
Query: 57 ITPALPH-IKHSWGDAFPIPNPD----------WDLILASDILLYVKQYSNLIKSLSVLL 105
+ A P + + WGD +PD + ++L +D+L + + + L++S+ LL
Sbjct: 136 VKRASPKVVPYRWGD-----SPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKXLL 190
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 33.5 bits (75), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 12/110 (10%)
Query: 3 HREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIE---DNIAYNSTTNGITP 59
+R I CI++GSG GAL+I L K + I D++ E NIA + +
Sbjct: 38 NRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHXNEIALKNIADANLND---- 93
Query: 60 ALPHIKHSWGDAFPIPNPD--WDLILASDILLYVKQYSNLIKSLSVLLKS 107
I+ GD IP D DLI++ + + + + + + +LKS
Sbjct: 94 ---RIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKS 140
>pdb|1EE8|A Chain A, Crystal Structure Of Mutm (Fpg) Protein From Thermus
Thermophilus Hb8
pdb|1EE8|B Chain B, Crystal Structure Of Mutm (Fpg) Protein From Thermus
Thermophilus Hb8
Length = 266
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 22/54 (40%)
Query: 106 KSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAG 159
+SY+ D G G EGLP PA RR+ T F +C+ G
Sbjct: 212 QSYRQPDGLPGGFQTRHAVYGREGLPCPACGRPVERRVVAGRGTHFCPTCQGEG 265
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1 MHHREWIERRRCIELGSGTGALAIFLRKA 29
H+R + + +++GSGTG L +F KA
Sbjct: 50 FHNRHLFKDKVVLDVGSGTGILCMFAAKA 78
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1 MHHREWIERRRCIELGSGTGALAIFLRKA 29
H+R + + +++GSGTG L +F KA
Sbjct: 53 FHNRHLFKDKVVLDVGSGTGILCMFAAKA 81
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1 MHHREWIERRRCIELGSGTGALAIFLRKA 29
H+R + + +++GSGTG L +F KA
Sbjct: 63 FHNRHLFKDKVVLDVGSGTGILCMFAAKA 91
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1 MHHREWIERRRCIELGSGTGALAIFLRKA 29
H+R + + +++GSGTG L +F KA
Sbjct: 59 FHNRHLFKDKVVLDVGSGTGILCMFAAKA 87
>pdb|1F3A|A Chain A, Crystal Structure Of Mgsta1-1 In Complex With Gsh
pdb|1F3A|B Chain B, Crystal Structure Of Mgsta1-1 In Complex With Gsh
Length = 222
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 40 NDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN----PDWDLILASDILLYVKQYS 95
+ +E + +A + T N PA + S G + + N D L+ ++LLYV+++
Sbjct: 114 DQREAKTALAKDRTKNRYLPAFEKVLKSHGQDYLVGNRLTRVDIHLL---EVLLYVEEFD 170
Query: 96 NLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGK 145
+ + LLK++K + S + ++ K Q P A + R+ K
Sbjct: 171 ASLLTPFPLLKAFKSRISSLPNVKKFLQPGSQRKPPMDAKQIQEARKAFK 220
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 11 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 70
R ++LG GTG ++FL++ ++ D + + +E +A + A +
Sbjct: 57 RVLDLGGGTGKWSLFLQE-RGFEVVLVDPSKEXLE--VAREKGVKNVVEAK-------AE 106
Query: 71 AFPIPNPDWDLILA-SDILLYVK 92
P P+ ++ +LA D+L YV+
Sbjct: 107 DLPFPSGAFEAVLALGDVLSYVE 129
>pdb|1F3B|A Chain A, Crystal Structure Of Mgsta1-1 In Complex With Glutathione
Conjugate Of Benzo[a]pyrene Epoxide
pdb|1F3B|B Chain B, Crystal Structure Of Mgsta1-1 In Complex With Glutathione
Conjugate Of Benzo[a]pyrene Epoxide
Length = 222
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 40 NDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN----PDWDLILASDILLYVKQYS 95
+ +E + +A + T N PA + S G + + N D L+ ++LLYV+++
Sbjct: 114 DQREAKTALAKDRTKNRYLPAFEKVLKSHGQDYLVGNRLTRVDIHLL---EVLLYVEEFD 170
Query: 96 NLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGK 145
+ + LLK++K + S + ++ K Q P A + R+ K
Sbjct: 171 ASLLTPFPLLKAFKSRISSLPNVKKFLQPGSQRKPPMDAKQIQEARKAFK 220
>pdb|1ITK|A Chain A, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
pdb|1ITK|B Chain B, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
Length = 731
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 57 ITPALPHIKHSWGDAFPIPNPDWDLI-------LASDILLYVKQYSNLIKSLSVLLKSYK 109
+ P +P + W D P+P+ D+DLI L +IL S L+K+ +Y+
Sbjct: 418 LGPEVPDEEMIWQD--PLPDADYDLIGDEEIAELKEEILDSDLSVSQLVKTAWASASTYR 475
Query: 110 PKDSQVG 116
D + G
Sbjct: 476 DSDKRGG 482
>pdb|3VLM|A Chain A, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLM|B Chain B, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
Length = 737
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 57 ITPALPHIKHSWGDAFPIPNPDWDLI-------LASDILLYVKQYSNLIKSLSVLLKSYK 109
+ P +P + W D P+P+ D+DLI L +IL S L+K+ +Y+
Sbjct: 418 LGPEVPDEEMIWQD--PLPDADYDLIGDEEIAELKEEILDSDLSVSQLVKTAWASASTYR 475
Query: 110 PKDSQVG 116
D + G
Sbjct: 476 DSDKRGG 482
>pdb|3UW8|A Chain A, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
pdb|3UW8|B Chain B, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
Length = 737
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 57 ITPALPHIKHSWGDAFPIPNPDWDLI-------LASDILLYVKQYSNLIKSLSVLLKSYK 109
+ P +P + W D P+P+ D+DLI L +IL S L+K+ +Y+
Sbjct: 418 LGPEVPDEEMIWQD--PLPDADYDLIGDEEIAELKEEILDSDLSVSQLVKTAWASASTYR 475
Query: 110 PKDSQVG 116
D + G
Sbjct: 476 DSDKRGG 482
>pdb|3VLK|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLK|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLL|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
pdb|3VLL|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
Length = 737
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 57 ITPALPHIKHSWGDAFPIPNPDWDLI-------LASDILLYVKQYSNLIKSLSVLLKSYK 109
+ P +P + W D P+P+ D+DLI L +IL S L+K+ +Y+
Sbjct: 418 LGPEVPDEEMIWQD--PLPDADYDLIGDEEIAELKEEILDSDLSVSQLVKTAWASASTYR 475
Query: 110 PKDSQVG 116
D + G
Sbjct: 476 DSDKRGG 482
>pdb|3VLH|A Chain A, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLH|B Chain B, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLI|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLI|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLJ|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
pdb|3VLJ|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
Length = 737
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 57 ITPALPHIKHSWGDAFPIPNPDWDLI-------LASDILLYVKQYSNLIKSLSVLLKSYK 109
+ P +P + W D P+P+ D+DLI L +IL S L+K+ +Y+
Sbjct: 418 LGPEVPDEEMIWQD--PLPDADYDLIGDEEIAELKEEILDSDLSVSQLVKTAWASASTYR 475
Query: 110 PKDSQVG 116
D + G
Sbjct: 476 DSDKRGG 482
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|C Chain C, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|D Chain D, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
Length = 690
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 77 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFL 136
PDW + + +I K S ++ LLK+Y S V +T+NE G W + +
Sbjct: 423 PDWSAVASDEITGVEKDISAALQVNCALLKAYGLP-SSVKIVTENEVILGNCDDFWVSVI 481
Query: 137 MSWRRRIGKEDETIFFTSCENAGLEVKHL 165
R+ + E ++ NAG + L
Sbjct: 482 GIARKNLLSHVEELYGGEVRNAGQVIAAL 510
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 66 HSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLK 106
+WG+A P P +D++L L +V+ ++ +L+
Sbjct: 83 RAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLR 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,725,264
Number of Sequences: 62578
Number of extensions: 234713
Number of successful extensions: 602
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 22
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)