Query 030565
Match_columns 175
No_of_seqs 113 out of 1606
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 15:39:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 99.9 1.7E-21 3.8E-26 139.9 10.3 149 8-164 51-221 (238)
2 PLN02396 hexaprenyldihydroxybe 99.9 4.2E-21 9.1E-26 144.5 10.1 159 7-171 130-293 (322)
3 PF01209 Ubie_methyltran: ubiE 99.9 1.8E-21 4E-26 140.7 7.8 152 6-165 45-218 (233)
4 PLN02244 tocopherol O-methyltr 99.9 3.9E-20 8.5E-25 141.1 15.0 156 7-169 117-280 (340)
5 PF12847 Methyltransf_18: Meth 99.8 3.4E-20 7.4E-25 120.0 9.9 108 8-117 1-110 (112)
6 PRK11036 putative S-adenosyl-L 99.8 3.9E-20 8.5E-25 136.2 10.7 154 8-167 44-207 (255)
7 TIGR00452 methyltransferase, p 99.8 9.8E-20 2.1E-24 136.6 12.3 155 5-166 118-272 (314)
8 PRK15068 tRNA mo(5)U34 methylt 99.8 1.9E-19 4E-24 136.2 13.3 154 6-166 120-273 (322)
9 COG2227 UbiG 2-polyprenyl-3-me 99.8 1.4E-20 2.9E-25 133.4 6.3 155 7-171 58-219 (243)
10 PTZ00098 phosphoethanolamine N 99.8 7.5E-20 1.6E-24 135.0 10.3 153 5-167 49-202 (263)
11 PLN02233 ubiquinone biosynthes 99.8 1.7E-19 3.7E-24 133.0 11.8 110 7-121 72-185 (261)
12 PF08241 Methyltransf_11: Meth 99.8 1.8E-19 4E-24 112.9 8.1 95 13-116 1-95 (95)
13 COG2230 Cfa Cyclopropane fatty 99.8 6.8E-19 1.5E-23 128.7 11.5 155 3-166 67-222 (283)
14 PF02353 CMAS: Mycolic acid cy 99.8 2.3E-19 5E-24 132.5 8.7 158 3-166 57-216 (273)
15 PRK11207 tellurite resistance 99.8 2.3E-18 5.1E-23 122.1 13.3 106 6-117 28-133 (197)
16 PLN02336 phosphoethanolamine N 99.8 9.7E-19 2.1E-23 139.2 11.8 150 7-167 265-414 (475)
17 PF13489 Methyltransf_23: Meth 99.8 9.2E-20 2E-24 125.0 3.5 141 6-164 20-160 (161)
18 KOG1540 Ubiquinone biosynthesi 99.8 3.5E-18 7.6E-23 121.6 11.2 154 5-164 97-278 (296)
19 PRK14103 trans-aconitate 2-met 99.8 5.5E-18 1.2E-22 124.8 12.7 147 6-166 27-183 (255)
20 PF08003 Methyltransf_9: Prote 99.8 6.4E-18 1.4E-22 123.9 12.4 154 5-165 112-265 (315)
21 smart00828 PKS_MT Methyltransf 99.8 1.2E-17 2.7E-22 120.7 13.6 142 10-166 1-143 (224)
22 PRK11873 arsM arsenite S-adeno 99.8 7E-18 1.5E-22 125.3 12.2 152 5-165 74-228 (272)
23 TIGR00477 tehB tellurite resis 99.8 8.1E-18 1.7E-22 119.1 10.7 105 6-117 28-132 (195)
24 PF13847 Methyltransf_31: Meth 99.8 7.9E-18 1.7E-22 114.7 10.2 107 7-120 2-112 (152)
25 TIGR02752 MenG_heptapren 2-hep 99.8 7.3E-18 1.6E-22 122.4 10.4 108 6-119 43-152 (231)
26 TIGR00537 hemK_rel_arch HemK-r 99.8 4.9E-17 1.1E-21 113.7 13.7 135 6-171 17-169 (179)
27 KOG1270 Methyltransferases [Co 99.7 2.1E-18 4.5E-23 123.3 5.8 156 9-170 90-252 (282)
28 PRK00107 gidB 16S rRNA methylt 99.7 2.3E-16 5E-21 110.5 15.0 122 8-165 45-167 (187)
29 PLN02490 MPBQ/MSBQ methyltrans 99.7 4.3E-17 9.4E-22 123.3 11.8 140 8-165 113-254 (340)
30 PF10294 Methyltransf_16: Puta 99.7 4.5E-17 9.7E-22 113.1 10.8 109 3-116 40-154 (173)
31 PF07021 MetW: Methionine bios 99.7 1.1E-16 2.3E-21 110.6 11.7 141 7-165 12-165 (193)
32 PRK12335 tellurite resistance 99.7 8.4E-17 1.8E-21 120.3 11.3 104 7-117 119-222 (287)
33 PF03848 TehB: Tellurite resis 99.7 6.3E-17 1.4E-21 112.9 9.8 107 5-118 27-133 (192)
34 PF06325 PrmA: Ribosomal prote 99.7 1.1E-16 2.3E-21 119.0 11.4 131 6-173 159-292 (295)
35 PRK15451 tRNA cmo(5)U34 methyl 99.7 1.1E-16 2.4E-21 117.3 10.3 107 7-118 55-164 (247)
36 PRK11705 cyclopropane fatty ac 99.7 3E-16 6.5E-21 121.3 13.1 146 6-166 165-311 (383)
37 PF08242 Methyltransf_12: Meth 99.7 2.8E-18 6.1E-23 108.7 1.4 97 13-114 1-99 (99)
38 TIGR02021 BchM-ChlM magnesium 99.7 1.6E-16 3.5E-21 114.5 10.4 148 7-166 54-205 (219)
39 TIGR00138 gidB 16S rRNA methyl 99.7 4.6E-16 1E-20 108.7 12.3 100 7-117 41-141 (181)
40 COG2264 PrmA Ribosomal protein 99.7 8E-16 1.7E-20 113.5 14.0 125 7-165 161-286 (300)
41 PF05175 MTS: Methyltransferas 99.7 2.6E-16 5.5E-21 109.2 10.5 106 8-117 31-139 (170)
42 PRK00517 prmA ribosomal protei 99.7 9.4E-16 2E-20 112.6 13.9 127 7-173 118-247 (250)
43 PRK01683 trans-aconitate 2-met 99.7 4.1E-16 8.9E-21 115.0 11.7 147 6-164 29-184 (258)
44 PRK10258 biotin biosynthesis p 99.7 1.6E-16 3.6E-21 116.7 9.4 101 8-120 42-142 (251)
45 PRK05134 bifunctional 3-demeth 99.7 4.1E-16 8.9E-21 113.4 11.3 158 6-170 46-208 (233)
46 PRK08287 cobalt-precorrin-6Y C 99.7 8.2E-16 1.8E-20 108.2 12.3 121 6-161 29-150 (187)
47 PRK08317 hypothetical protein; 99.7 7.4E-16 1.6E-20 112.1 12.2 160 5-171 16-180 (241)
48 PF13649 Methyltransf_25: Meth 99.7 9.9E-17 2.2E-21 101.9 6.5 96 12-112 1-101 (101)
49 PRK00121 trmB tRNA (guanine-N( 99.7 3.5E-16 7.5E-21 111.3 9.7 130 8-163 40-177 (202)
50 PRK00216 ubiE ubiquinone/menaq 99.7 8.7E-16 1.9E-20 111.8 11.8 106 8-118 51-158 (239)
51 TIGR00740 methyltransferase, p 99.7 6.9E-16 1.5E-20 112.6 11.0 106 8-118 53-161 (239)
52 TIGR02469 CbiT precorrin-6Y C5 99.7 1.2E-15 2.5E-20 100.2 10.7 105 6-118 17-122 (124)
53 TIGR01983 UbiG ubiquinone bios 99.7 2E-15 4.4E-20 109.1 12.9 156 7-171 44-207 (224)
54 TIGR00406 prmA ribosomal prote 99.7 1.5E-15 3.3E-20 113.6 12.6 101 7-117 158-258 (288)
55 TIGR03587 Pse_Me-ase pseudamin 99.7 5.6E-16 1.2E-20 110.3 9.2 101 7-119 42-143 (204)
56 COG4123 Predicted O-methyltran 99.7 1.4E-15 3.1E-20 109.5 11.0 132 8-165 44-192 (248)
57 PRK14968 putative methyltransf 99.7 7.3E-15 1.6E-19 103.3 14.4 135 7-169 22-175 (188)
58 KOG4300 Predicted methyltransf 99.7 2.7E-16 5.9E-21 108.8 6.5 103 10-117 78-181 (252)
59 PRK05785 hypothetical protein; 99.7 8.2E-16 1.8E-20 111.2 9.3 90 8-111 51-140 (226)
60 PLN02585 magnesium protoporphy 99.6 2.2E-15 4.9E-20 113.3 11.7 147 8-165 144-297 (315)
61 PLN02336 phosphoethanolamine N 99.6 2.5E-15 5.4E-20 119.8 12.6 106 7-118 36-142 (475)
62 PRK15001 SAM-dependent 23S rib 99.6 1.8E-15 4E-20 116.1 11.3 106 9-117 229-339 (378)
63 TIGR02716 C20_methyl_CrtF C-20 99.6 3.1E-15 6.8E-20 112.9 12.2 150 6-164 147-303 (306)
64 PRK07580 Mg-protoporphyrin IX 99.6 3.4E-15 7.4E-20 108.2 11.9 151 7-167 62-214 (230)
65 PRK00377 cbiT cobalt-precorrin 99.6 4.1E-15 8.9E-20 105.6 11.7 105 5-116 37-143 (198)
66 PRK06202 hypothetical protein; 99.6 5.9E-15 1.3E-19 107.2 12.1 151 8-171 60-226 (232)
67 PF05401 NodS: Nodulation prot 99.6 6.3E-16 1.4E-20 107.0 6.6 101 10-117 45-145 (201)
68 PRK14967 putative methyltransf 99.6 7.6E-15 1.6E-19 106.1 12.2 110 6-120 34-161 (223)
69 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 8.2E-15 1.8E-19 105.6 12.2 104 8-119 39-144 (223)
70 PRK06922 hypothetical protein; 99.6 4.3E-15 9.3E-20 119.4 11.2 109 6-118 416-537 (677)
71 PRK13255 thiopurine S-methyltr 99.6 1.4E-14 3E-19 104.0 12.4 108 8-117 37-154 (218)
72 PRK09489 rsmC 16S ribosomal RN 99.6 6.1E-15 1.3E-19 112.3 11.0 105 9-119 197-304 (342)
73 TIGR03840 TMPT_Se_Te thiopurin 99.6 8.3E-15 1.8E-19 104.8 11.0 111 8-120 34-154 (213)
74 PRK04266 fibrillarin; Provisio 99.6 6.7E-14 1.4E-18 100.9 15.4 140 4-167 68-210 (226)
75 TIGR02081 metW methionine bios 99.6 2.6E-14 5.5E-19 101.2 12.3 141 7-165 12-165 (194)
76 PRK13944 protein-L-isoaspartat 99.6 1.5E-14 3.3E-19 103.2 10.7 101 6-117 70-172 (205)
77 PF13659 Methyltransf_26: Meth 99.6 3.1E-15 6.7E-20 97.4 6.4 109 9-118 1-115 (117)
78 TIGR02072 BioC biotin biosynth 99.6 1.7E-14 3.6E-19 105.0 10.6 102 8-119 34-136 (240)
79 TIGR03533 L3_gln_methyl protei 99.6 1.1E-13 2.4E-18 103.2 14.5 106 9-117 122-250 (284)
80 COG4106 Tam Trans-aconitate me 99.6 6.9E-15 1.5E-19 102.6 7.3 106 6-124 28-135 (257)
81 PTZ00146 fibrillarin; Provisio 99.6 1.6E-13 3.5E-18 101.3 14.9 106 3-117 127-236 (293)
82 PF06080 DUF938: Protein of un 99.6 2.3E-14 4.9E-19 100.4 9.6 154 11-168 28-193 (204)
83 COG4976 Predicted methyltransf 99.6 2.3E-15 4.9E-20 105.8 4.2 138 10-167 127-265 (287)
84 KOG1541 Predicted protein carb 99.6 1.5E-14 3.3E-19 101.1 8.2 107 8-122 50-164 (270)
85 PRK11805 N5-glutamine S-adenos 99.6 2.2E-13 4.7E-18 102.6 14.4 105 10-117 135-262 (307)
86 KOG2361 Predicted methyltransf 99.6 4E-14 8.7E-19 100.3 9.5 151 11-165 74-235 (264)
87 smart00138 MeTrc Methyltransfe 99.5 1.4E-14 3E-19 107.0 7.3 112 8-121 99-245 (264)
88 TIGR01177 conserved hypothetic 99.5 1.5E-13 3.4E-18 104.6 13.0 108 6-117 180-293 (329)
89 TIGR03438 probable methyltrans 99.5 6.5E-14 1.4E-18 105.4 10.8 108 8-117 63-176 (301)
90 PRK13942 protein-L-isoaspartat 99.5 5.9E-14 1.3E-18 100.6 9.8 100 5-118 73-176 (212)
91 TIGR03534 RF_mod_PrmC protein- 99.5 2.7E-13 5.9E-18 99.5 13.5 128 9-165 88-239 (251)
92 TIGR00080 pimt protein-L-isoas 99.5 8.7E-14 1.9E-18 100.0 10.0 101 6-118 75-177 (215)
93 COG2813 RsmC 16S RNA G1207 met 99.5 1.8E-13 3.9E-18 100.7 11.0 108 6-119 156-267 (300)
94 TIGR03704 PrmC_rel_meth putati 99.5 6.4E-13 1.4E-17 97.5 13.4 131 9-169 87-242 (251)
95 TIGR00091 tRNA (guanine-N(7)-) 99.5 1.8E-13 3.8E-18 96.9 9.8 108 8-118 16-132 (194)
96 COG2242 CobL Precorrin-6B meth 99.5 1E-12 2.2E-17 90.4 13.0 125 5-165 31-159 (187)
97 PRK11088 rrmA 23S rRNA methylt 99.5 1.1E-13 2.3E-18 102.9 8.8 96 8-121 85-184 (272)
98 PRK14966 unknown domain/N5-glu 99.5 7.9E-13 1.7E-17 102.1 13.7 128 8-164 251-402 (423)
99 PLN03075 nicotianamine synthas 99.5 3.8E-13 8.1E-18 99.7 11.3 107 8-118 123-233 (296)
100 PRK07402 precorrin-6B methylas 99.5 2.4E-13 5.1E-18 96.4 9.8 103 6-117 38-141 (196)
101 PF05219 DREV: DREV methyltran 99.5 3.5E-13 7.5E-18 97.1 10.1 147 8-171 94-244 (265)
102 PRK01544 bifunctional N5-gluta 99.5 1.1E-12 2.4E-17 104.9 14.1 106 9-117 139-268 (506)
103 PRK09328 N5-glutamine S-adenos 99.5 2.2E-12 4.8E-17 95.9 14.0 126 7-161 107-256 (275)
104 KOG3010 Methyltransferase [Gen 99.5 1.1E-13 2.3E-18 98.2 6.1 99 10-117 35-135 (261)
105 TIGR00536 hemK_fam HemK family 99.5 1.4E-12 3E-17 97.5 11.8 105 10-117 116-243 (284)
106 PHA03411 putative methyltransf 99.5 2.4E-12 5.1E-17 94.3 12.4 127 8-163 64-210 (279)
107 cd02440 AdoMet_MTases S-adenos 99.4 1.5E-12 3.4E-17 81.9 10.1 103 11-117 1-103 (107)
108 PRK11188 rrmJ 23S rRNA methylt 99.4 1.2E-12 2.7E-17 93.5 10.3 99 6-117 49-164 (209)
109 PRK00312 pcm protein-L-isoaspa 99.4 2E-12 4.3E-17 92.8 11.4 99 6-119 76-176 (212)
110 KOG1499 Protein arginine N-met 99.4 4.1E-13 9E-18 100.1 7.7 112 2-116 54-165 (346)
111 COG2518 Pcm Protein-L-isoaspar 99.4 2.1E-12 4.5E-17 90.7 10.1 100 5-119 69-170 (209)
112 PRK14121 tRNA (guanine-N(7)-)- 99.4 2E-12 4.3E-17 99.3 10.7 107 8-117 122-234 (390)
113 TIGR00438 rrmJ cell division p 99.4 1.5E-12 3.4E-17 91.7 9.0 100 5-117 29-145 (188)
114 COG2890 HemK Methylase of poly 99.4 3E-12 6.6E-17 95.2 10.8 100 11-116 113-236 (280)
115 PRK11783 rlmL 23S rRNA m(2)G24 99.4 8.4E-13 1.8E-17 109.4 8.4 110 7-117 537-655 (702)
116 PRK10901 16S rRNA methyltransf 99.4 6.6E-12 1.4E-16 98.8 12.3 112 6-120 242-374 (427)
117 PRK15128 23S rRNA m(5)C1962 me 99.4 5.7E-12 1.2E-16 97.8 11.0 110 6-117 218-338 (396)
118 KOG3201 Uncharacterized conser 99.4 4E-13 8.7E-18 89.7 3.8 138 1-165 22-164 (201)
119 PRK11727 23S rRNA mA1618 methy 99.4 1.1E-11 2.4E-16 93.3 11.6 152 8-165 114-290 (321)
120 PRK14902 16S rRNA methyltransf 99.4 1.2E-11 2.6E-16 97.9 12.0 113 6-120 248-381 (444)
121 PRK14903 16S rRNA methyltransf 99.4 9.3E-12 2E-16 97.9 11.1 115 6-122 235-370 (431)
122 PRK10909 rsmD 16S rRNA m(2)G96 99.4 5.7E-12 1.2E-16 89.2 8.9 108 7-120 52-161 (199)
123 PF05724 TPMT: Thiopurine S-me 99.4 9.9E-12 2.1E-16 89.2 10.2 110 6-117 35-154 (218)
124 COG2263 Predicted RNA methylas 99.3 8.3E-11 1.8E-15 80.9 13.9 132 5-172 42-173 (198)
125 PRK13943 protein-L-isoaspartat 99.3 9.4E-12 2E-16 94.0 10.3 100 6-117 78-179 (322)
126 PLN02781 Probable caffeoyl-CoA 99.3 6.3E-12 1.4E-16 91.3 8.5 104 7-117 67-177 (234)
127 PRK04457 spermidine synthase; 99.3 6.2E-12 1.3E-16 92.8 8.6 107 8-117 66-176 (262)
128 KOG2899 Predicted methyltransf 99.3 9.2E-12 2E-16 88.5 9.0 111 5-117 55-208 (288)
129 COG3897 Predicted methyltransf 99.3 3.9E-12 8.5E-17 87.6 6.8 106 1-116 72-177 (218)
130 PRK13168 rumA 23S rRNA m(5)U19 99.3 1.6E-11 3.4E-16 97.2 11.2 101 7-117 296-399 (443)
131 PF05891 Methyltransf_PK: AdoM 99.3 6.1E-12 1.3E-16 88.7 7.6 144 8-165 55-199 (218)
132 KOG1271 Methyltransferases [Ge 99.3 5.8E-12 1.2E-16 85.9 7.1 105 11-117 70-180 (227)
133 PLN02672 methionine S-methyltr 99.3 3.7E-11 8E-16 102.3 13.5 111 8-120 118-280 (1082)
134 TIGR00563 rsmB ribosomal RNA s 99.3 2.1E-11 4.6E-16 96.0 11.2 112 6-121 236-371 (426)
135 PF01135 PCMT: Protein-L-isoas 99.3 2.1E-12 4.5E-17 92.0 4.9 102 4-119 68-173 (209)
136 TIGR00446 nop2p NOL1/NOP2/sun 99.3 2.5E-11 5.3E-16 89.9 10.6 111 7-122 70-203 (264)
137 PRK14904 16S rRNA methyltransf 99.3 3E-11 6.4E-16 95.6 11.6 112 6-122 248-381 (445)
138 PRK14901 16S rRNA methyltransf 99.3 2.5E-11 5.4E-16 95.8 11.1 114 6-121 250-387 (434)
139 PRK13256 thiopurine S-methyltr 99.3 4.1E-11 8.8E-16 86.1 10.8 111 8-120 43-165 (226)
140 TIGR00478 tly hemolysin TlyA f 99.3 1.3E-11 2.9E-16 88.9 7.5 143 7-167 74-217 (228)
141 PRK03522 rumB 23S rRNA methylu 99.3 4.2E-11 9E-16 90.8 10.6 101 8-117 173-273 (315)
142 PRK00811 spermidine synthase; 99.3 3.4E-11 7.4E-16 89.9 9.1 108 8-117 76-190 (283)
143 KOG2904 Predicted methyltransf 99.3 7E-11 1.5E-15 85.5 10.3 116 3-119 143-286 (328)
144 COG2519 GCD14 tRNA(1-methylade 99.3 1E-10 2.2E-15 84.1 11.1 105 4-120 90-197 (256)
145 PF03291 Pox_MCEL: mRNA cappin 99.2 2.6E-11 5.7E-16 92.0 7.4 113 8-120 62-188 (331)
146 PHA03412 putative methyltransf 99.2 2.3E-10 5E-15 82.2 11.7 95 8-112 49-157 (241)
147 PF08704 GCD14: tRNA methyltra 99.2 1.2E-10 2.5E-15 84.8 10.2 137 4-173 36-180 (247)
148 KOG1500 Protein arginine N-met 99.2 9.7E-11 2.1E-15 87.1 9.7 112 1-117 170-281 (517)
149 COG2521 Predicted archaeal met 99.2 8.2E-11 1.8E-15 83.3 8.7 142 7-168 133-278 (287)
150 smart00650 rADc Ribosomal RNA 99.2 1.2E-10 2.6E-15 80.7 9.5 101 5-117 10-112 (169)
151 KOG1975 mRNA cap methyltransfe 99.2 1.2E-10 2.5E-15 86.2 9.7 115 7-121 116-240 (389)
152 PRK03612 spermidine synthase; 99.2 5.5E-11 1.2E-15 95.6 8.8 109 8-117 297-414 (521)
153 TIGR00417 speE spermidine synt 99.2 1E-10 2.2E-15 86.9 8.8 108 8-117 72-185 (270)
154 TIGR00095 RNA methyltransferas 99.2 9E-11 1.9E-15 82.6 7.5 108 7-119 48-160 (189)
155 PRK01581 speE spermidine synth 99.2 3.2E-10 6.9E-15 86.2 10.4 108 7-117 149-267 (374)
156 PLN02232 ubiquinone biosynthes 99.2 5.5E-11 1.2E-15 81.6 5.6 81 35-120 1-83 (160)
157 TIGR02085 meth_trns_rumB 23S r 99.2 1.6E-10 3.5E-15 89.5 8.8 102 7-117 232-333 (374)
158 PLN02476 O-methyltransferase 99.2 2.3E-10 5E-15 84.5 8.6 104 7-117 117-227 (278)
159 PF00891 Methyltransf_2: O-met 99.2 2.2E-10 4.7E-15 83.8 8.4 102 5-120 97-201 (241)
160 COG4122 Predicted O-methyltran 99.1 3.8E-10 8.3E-15 80.4 8.5 104 6-116 57-164 (219)
161 TIGR00479 rumA 23S rRNA (uraci 99.1 7.9E-10 1.7E-14 87.3 11.0 102 7-117 291-395 (431)
162 KOG3191 Predicted N6-DNA-methy 99.1 3E-09 6.5E-14 72.7 11.9 130 9-168 44-194 (209)
163 PLN02366 spermidine synthase 99.1 8.9E-10 1.9E-14 83.0 10.1 109 7-117 90-205 (308)
164 KOG2940 Predicted methyltransf 99.1 3.7E-10 8.1E-15 80.0 5.8 152 9-173 73-233 (325)
165 PF03602 Cons_hypoth95: Conser 99.0 9.9E-11 2.1E-15 81.9 2.6 108 7-118 41-153 (183)
166 COG1092 Predicted SAM-dependen 99.0 1.5E-09 3.3E-14 83.7 9.2 111 6-117 215-335 (393)
167 PF01596 Methyltransf_3: O-met 99.0 3.5E-10 7.6E-15 80.4 5.4 104 7-117 44-154 (205)
168 PF02475 Met_10: Met-10+ like- 99.0 8.1E-10 1.8E-14 78.1 6.3 98 7-114 100-198 (200)
169 PRK04338 N(2),N(2)-dimethylgua 99.0 2.9E-09 6.4E-14 82.5 8.7 100 9-118 58-158 (382)
170 PF05148 Methyltransf_8: Hypot 99.0 8.9E-10 1.9E-14 77.3 5.1 112 8-165 72-183 (219)
171 PTZ00338 dimethyladenosine tra 98.9 2.5E-09 5.3E-14 80.2 6.8 82 5-92 33-114 (294)
172 PRK14896 ksgA 16S ribosomal RN 98.9 2.9E-09 6.2E-14 78.7 7.0 76 5-88 26-101 (258)
173 PF02390 Methyltransf_4: Putat 98.9 3.1E-09 6.7E-14 75.2 6.7 103 11-118 20-133 (195)
174 COG0742 N6-adenine-specific me 98.9 1E-08 2.2E-13 71.1 8.5 109 6-117 41-153 (187)
175 PF05185 PRMT5: PRMT5 arginine 98.9 5E-09 1.1E-13 82.7 7.9 102 8-113 186-292 (448)
176 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.9 4.9E-09 1.1E-13 76.6 7.0 149 6-166 54-238 (256)
177 KOG3987 Uncharacterized conser 98.9 1.1E-10 2.4E-15 81.3 -1.6 145 9-171 113-264 (288)
178 KOG3420 Predicted RNA methylas 98.9 2.9E-09 6.2E-14 70.2 4.8 79 6-88 46-124 (185)
179 PLN02589 caffeoyl-CoA O-methyl 98.9 8.3E-09 1.8E-13 75.3 7.7 103 7-116 78-188 (247)
180 PF03141 Methyltransf_29: Puta 98.9 1.5E-09 3.2E-14 84.9 3.7 102 10-121 119-222 (506)
181 PF12147 Methyltransf_20: Puta 98.9 5.1E-08 1.1E-12 71.7 11.4 147 8-161 135-292 (311)
182 PRK05031 tRNA (uracil-5-)-meth 98.9 6.6E-09 1.4E-13 80.2 7.1 97 10-117 208-319 (362)
183 PRK00274 ksgA 16S ribosomal RN 98.9 1.3E-08 2.9E-13 75.7 8.4 77 5-88 39-115 (272)
184 TIGR00755 ksgA dimethyladenosi 98.9 1.8E-08 3.9E-13 74.2 8.6 75 5-87 26-103 (253)
185 PF10672 Methyltrans_SAM: S-ad 98.8 3.7E-09 7.9E-14 78.6 4.6 110 7-117 122-237 (286)
186 PRK10611 chemotaxis methyltran 98.8 1.5E-08 3.3E-13 75.5 7.8 110 10-121 117-265 (287)
187 PRK04148 hypothetical protein; 98.8 4.8E-08 1E-12 64.4 9.1 92 8-117 16-108 (134)
188 COG2520 Predicted methyltransf 98.8 8.4E-08 1.8E-12 72.7 11.4 101 7-116 187-287 (341)
189 KOG2793 Putative N2,N2-dimethy 98.8 3.5E-08 7.5E-13 71.6 8.8 100 9-113 87-194 (248)
190 KOG1269 SAM-dependent methyltr 98.8 1.1E-08 2.4E-13 78.4 6.1 107 6-117 108-214 (364)
191 COG1041 Predicted DNA modifica 98.8 5E-08 1.1E-12 73.6 9.2 111 6-119 195-311 (347)
192 TIGR00308 TRM1 tRNA(guanine-26 98.8 2.2E-08 4.9E-13 77.3 7.6 100 10-118 46-147 (374)
193 PF01739 CheR: CheR methyltran 98.8 4E-08 8.7E-13 69.4 8.2 111 8-121 31-178 (196)
194 KOG3045 Predicted RNA methylas 98.8 2E-08 4.3E-13 72.5 6.1 110 8-165 180-289 (325)
195 TIGR02143 trmA_only tRNA (urac 98.8 2.6E-08 5.6E-13 76.7 6.8 98 9-117 198-310 (353)
196 PF09243 Rsm22: Mitochondrial 98.7 1.2E-07 2.7E-12 70.5 10.0 110 6-122 31-143 (274)
197 PRK11933 yebU rRNA (cytosine-C 98.7 1.1E-07 2.3E-12 75.5 9.8 108 6-118 111-242 (470)
198 PF02527 GidB: rRNA small subu 98.7 6.3E-08 1.4E-12 67.7 7.3 95 11-116 51-146 (184)
199 COG1352 CheR Methylase of chem 98.7 1.7E-07 3.6E-12 69.1 9.8 111 9-121 97-244 (268)
200 KOG3178 Hydroxyindole-O-methyl 98.7 1.6E-07 3.5E-12 70.7 9.2 144 10-165 179-328 (342)
201 PLN02823 spermine synthase 98.7 1.6E-07 3.4E-12 71.6 8.6 107 8-117 103-219 (336)
202 COG0220 Predicted S-adenosylme 98.6 2E-07 4.4E-12 67.2 8.1 104 10-118 50-164 (227)
203 KOG1661 Protein-L-isoaspartate 98.6 2.9E-07 6.4E-12 64.5 8.4 102 6-117 80-192 (237)
204 PF09445 Methyltransf_15: RNA 98.6 4.1E-08 8.9E-13 67.0 3.9 76 10-87 1-78 (163)
205 PF07942 N2227: N2227-like pro 98.6 4.1E-06 9E-11 61.8 13.8 144 8-167 56-242 (270)
206 PRK00536 speE spermidine synth 98.6 5.2E-07 1.1E-11 66.4 9.0 99 8-117 72-170 (262)
207 COG2265 TrmA SAM-dependent met 98.6 5.1E-07 1.1E-11 71.1 9.1 99 7-117 292-395 (432)
208 COG3963 Phospholipid N-methylt 98.6 1.5E-06 3.2E-11 59.0 9.8 111 5-123 45-161 (194)
209 COG0357 GidB Predicted S-adeno 98.5 5.9E-07 1.3E-11 64.1 8.2 96 9-116 68-166 (215)
210 PF01170 UPF0020: Putative RNA 98.5 8.5E-07 1.8E-11 62.0 8.8 104 5-110 25-143 (179)
211 COG1189 Predicted rRNA methyla 98.5 4.7E-07 1E-11 64.8 6.3 143 6-166 77-223 (245)
212 PF13679 Methyltransf_32: Meth 98.5 2.9E-06 6.2E-11 57.0 9.9 104 7-121 24-134 (141)
213 KOG0820 Ribosomal RNA adenine 98.5 8.2E-07 1.8E-11 64.7 7.5 79 4-87 54-132 (315)
214 KOG1663 O-methyltransferase [S 98.5 2.1E-06 4.6E-11 61.1 9.4 105 6-117 71-182 (237)
215 COG4076 Predicted RNA methylas 98.5 4.1E-07 8.9E-12 62.8 5.6 102 9-117 33-134 (252)
216 PRK01544 bifunctional N5-gluta 98.5 1E-06 2.3E-11 70.9 8.7 104 9-117 348-461 (506)
217 COG0030 KsgA Dimethyladenosine 98.5 1.4E-06 3E-11 63.8 8.5 79 5-92 27-108 (259)
218 TIGR03439 methyl_EasF probable 98.4 2.1E-06 4.7E-11 65.0 9.6 108 8-117 76-196 (319)
219 PF11968 DUF3321: Putative met 98.4 4.2E-07 9.1E-12 64.3 5.0 121 10-165 53-179 (219)
220 PF05971 Methyltransf_10: Prot 98.4 1.8E-06 4E-11 64.4 8.2 83 9-92 103-191 (299)
221 COG0500 SmtA SAM-dependent met 98.4 6.3E-06 1.4E-10 55.4 10.3 102 12-120 52-157 (257)
222 PF08123 DOT1: Histone methyla 98.4 1E-06 2.2E-11 62.7 6.4 107 5-117 39-157 (205)
223 PF04816 DUF633: Family of unk 98.4 7.2E-06 1.6E-10 58.4 10.4 126 12-172 1-134 (205)
224 KOG1709 Guanidinoacetate methy 98.4 3.4E-06 7.3E-11 59.6 8.3 105 7-117 100-205 (271)
225 TIGR02987 met_A_Alw26 type II 98.4 2.9E-06 6.3E-11 68.8 9.1 79 8-88 31-122 (524)
226 COG0421 SpeE Spermidine syntha 98.4 2.7E-06 5.9E-11 63.3 8.2 105 10-117 78-189 (282)
227 PF02384 N6_Mtase: N-6 DNA Met 98.3 1.5E-06 3.2E-11 66.0 6.6 108 7-117 45-182 (311)
228 PRK11783 rlmL 23S rRNA m(2)G24 98.3 9E-06 1.9E-10 68.1 11.5 111 8-119 190-348 (702)
229 PRK00050 16S rRNA m(4)C1402 me 98.3 8.6E-07 1.9E-11 66.4 4.2 45 7-52 18-64 (296)
230 PF01728 FtsJ: FtsJ-like methy 98.2 2.2E-06 4.7E-11 60.0 4.9 104 8-117 23-138 (181)
231 KOG2915 tRNA(1-methyladenosine 98.2 7.8E-06 1.7E-10 59.7 7.7 105 4-117 101-209 (314)
232 COG0144 Sun tRNA and rRNA cyto 98.2 3.9E-05 8.4E-10 59.3 11.6 116 5-122 153-292 (355)
233 PF01564 Spermine_synth: Sperm 98.2 1.2E-06 2.7E-11 64.2 2.7 109 8-117 76-190 (246)
234 TIGR01444 fkbM_fam methyltrans 98.2 9.7E-06 2.1E-10 54.3 6.7 46 11-57 1-47 (143)
235 COG0116 Predicted N6-adenine-s 98.1 4.1E-05 8.9E-10 58.9 10.6 81 5-88 188-309 (381)
236 KOG1331 Predicted methyltransf 98.1 1.7E-06 3.6E-11 63.5 2.7 98 8-117 45-142 (293)
237 PF05958 tRNA_U5-meth_tr: tRNA 98.1 3.4E-06 7.4E-11 65.0 4.5 52 10-64 198-249 (352)
238 KOG2920 Predicted methyltransf 98.0 1.7E-06 3.8E-11 63.5 1.3 107 6-117 114-233 (282)
239 COG0293 FtsJ 23S rRNA methylas 98.0 7.7E-05 1.7E-09 52.8 8.4 98 7-117 44-158 (205)
240 PRK11760 putative 23S rRNA C24 97.9 0.0001 2.2E-09 56.1 8.3 86 6-111 209-296 (357)
241 PF01269 Fibrillarin: Fibrilla 97.9 0.00014 3.1E-09 51.9 8.4 107 2-117 67-177 (229)
242 KOG2730 Methylase [General fun 97.9 1E-05 2.2E-10 57.4 2.5 100 8-112 94-196 (263)
243 KOG2352 Predicted spermine/spe 97.8 0.00013 2.9E-09 57.5 8.1 105 11-119 51-162 (482)
244 KOG2187 tRNA uracil-5-methyltr 97.8 3.4E-05 7.3E-10 61.0 4.5 60 4-69 379-438 (534)
245 PHA01634 hypothetical protein 97.8 0.0002 4.3E-09 46.6 7.1 50 7-57 27-76 (156)
246 PF03141 Methyltransf_29: Puta 97.8 2.7E-05 5.8E-10 61.6 3.8 96 10-117 367-466 (506)
247 PRK10742 putative methyltransf 97.8 0.00024 5.3E-09 51.8 8.4 81 6-88 84-174 (250)
248 PF00398 RrnaAD: Ribosomal RNA 97.8 7.2E-05 1.6E-09 55.5 5.8 46 6-53 28-73 (262)
249 PF06962 rRNA_methylase: Putat 97.8 6.4E-05 1.4E-09 50.0 4.9 86 33-120 1-94 (140)
250 PF01861 DUF43: Protein of unk 97.8 0.00093 2E-08 48.4 11.1 133 4-165 40-176 (243)
251 PF04672 Methyltransf_19: S-ad 97.7 4.7E-05 1E-09 56.0 4.4 109 10-120 70-192 (267)
252 PF03059 NAS: Nicotianamine sy 97.7 0.00013 2.8E-09 54.2 6.7 105 9-117 121-229 (276)
253 COG2384 Predicted SAM-dependen 97.7 0.0043 9.4E-08 44.3 14.0 93 8-109 16-111 (226)
254 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.7 5.2E-05 1.1E-09 56.8 4.3 114 6-121 83-222 (283)
255 COG1889 NOP1 Fibrillarin-like 97.7 0.0019 4.1E-08 45.5 11.2 105 3-117 71-179 (231)
256 KOG2798 Putative trehalase [Ca 97.7 0.001 2.3E-08 49.8 10.4 143 8-165 150-335 (369)
257 COG4262 Predicted spermidine s 97.6 0.00067 1.5E-08 51.9 9.0 105 9-117 290-406 (508)
258 COG1064 AdhP Zn-dependent alco 97.6 0.00042 9E-09 52.9 7.6 99 2-118 160-259 (339)
259 cd00315 Cyt_C5_DNA_methylase C 97.6 0.0038 8.2E-08 46.7 12.5 70 11-88 2-72 (275)
260 COG5459 Predicted rRNA methyla 97.5 0.00022 4.8E-09 54.2 5.5 116 5-122 110-229 (484)
261 PF13578 Methyltransf_24: Meth 97.4 1.3E-05 2.9E-10 50.9 -2.1 95 13-116 1-103 (106)
262 PF02005 TRM: N2,N2-dimethylgu 97.4 0.00025 5.4E-09 55.2 4.4 100 9-118 50-154 (377)
263 KOG1501 Arginine N-methyltrans 97.4 0.00059 1.3E-08 53.4 6.2 55 10-65 68-122 (636)
264 KOG3115 Methyltransferase-like 97.3 0.00074 1.6E-08 47.6 5.6 107 10-117 62-182 (249)
265 PRK09424 pntA NAD(P) transhydr 97.3 0.0024 5.3E-08 51.6 9.2 101 6-118 162-285 (509)
266 COG4627 Uncharacterized protei 97.3 5.1E-05 1.1E-09 51.0 -0.5 51 72-123 41-91 (185)
267 KOG0024 Sorbitol dehydrogenase 97.2 0.0038 8.3E-08 47.1 8.7 102 5-118 166-273 (354)
268 KOG1122 tRNA and rRNA cytosine 97.1 0.0044 9.5E-08 48.3 8.7 111 5-118 238-371 (460)
269 COG1867 TRM1 N2,N2-dimethylgua 97.1 0.0027 5.8E-08 48.7 6.8 104 9-121 53-157 (380)
270 PRK09880 L-idonate 5-dehydroge 97.0 0.0057 1.2E-07 47.0 8.6 96 7-117 168-265 (343)
271 PLN02668 indole-3-acetate carb 97.0 0.0085 1.8E-07 46.8 9.1 113 9-122 64-241 (386)
272 TIGR02822 adh_fam_2 zinc-bindi 96.9 0.013 2.8E-07 44.9 9.3 90 6-117 163-253 (329)
273 KOG4058 Uncharacterized conser 96.8 0.0065 1.4E-07 40.8 6.2 98 8-117 72-171 (199)
274 PF03492 Methyltransf_7: SAM d 96.8 0.005 1.1E-07 47.3 6.5 114 8-123 16-188 (334)
275 TIGR01202 bchC 2-desacetyl-2-h 96.8 0.035 7.6E-07 42.1 11.0 85 8-117 144-230 (308)
276 KOG1596 Fibrillarin and relate 96.7 0.0068 1.5E-07 44.0 6.2 108 2-117 150-260 (317)
277 KOG1227 Putative methyltransfe 96.7 0.0013 2.8E-08 49.0 2.4 95 9-113 195-290 (351)
278 PF07757 AdoMet_MTase: Predict 96.7 0.0019 4.2E-08 40.8 2.8 32 9-41 59-90 (112)
279 COG1568 Predicted methyltransf 96.6 0.041 8.8E-07 40.9 9.5 104 1-111 145-250 (354)
280 PF04445 SAM_MT: Putative SAM- 96.6 0.011 2.3E-07 43.0 6.5 77 11-88 78-161 (234)
281 PF04989 CmcI: Cephalosporin h 96.6 0.014 3.1E-07 41.5 7.0 104 7-117 31-146 (206)
282 COG1063 Tdh Threonine dehydrog 96.5 0.018 3.9E-07 44.6 8.1 97 7-117 167-268 (350)
283 COG0286 HsdM Type I restrictio 96.5 0.037 8.1E-07 44.8 10.0 106 8-117 186-325 (489)
284 COG4798 Predicted methyltransf 96.5 0.059 1.3E-06 38.0 9.5 143 5-165 45-203 (238)
285 PF07091 FmrO: Ribosomal RNA m 96.4 0.0075 1.6E-07 44.1 5.1 75 8-88 105-181 (251)
286 COG3129 Predicted SAM-dependen 96.3 0.0065 1.4E-07 43.8 4.2 80 8-88 78-163 (292)
287 KOG2198 tRNA cytosine-5-methyl 96.3 0.043 9.4E-07 42.3 8.8 119 5-123 152-301 (375)
288 KOG4589 Cell division protein 96.3 0.0071 1.5E-07 42.2 4.2 38 4-41 65-104 (232)
289 cd08254 hydroxyacyl_CoA_DH 6-h 96.3 0.018 4E-07 43.7 6.8 94 6-117 163-262 (338)
290 KOG1253 tRNA methyltransferase 96.3 0.0026 5.6E-08 50.5 2.1 104 7-118 108-216 (525)
291 PF02636 Methyltransf_28: Puta 96.2 0.0092 2E-07 44.0 4.6 41 10-51 20-69 (252)
292 KOG2539 Mitochondrial/chloropl 96.2 0.0091 2E-07 47.2 4.5 107 8-117 200-314 (491)
293 TIGR00675 dcm DNA-methyltransf 96.0 0.18 4E-06 38.5 10.9 39 12-52 1-40 (315)
294 cd08283 FDH_like_1 Glutathione 95.9 0.077 1.7E-06 41.5 8.8 107 6-117 182-305 (386)
295 PRK11524 putative methyltransf 95.9 0.028 6.1E-07 42.2 6.0 45 7-53 207-251 (284)
296 KOG1562 Spermidine synthase [A 95.8 0.033 7.2E-07 41.7 5.7 111 5-117 118-235 (337)
297 cd08237 ribitol-5-phosphate_DH 95.7 0.074 1.6E-06 40.9 7.8 91 7-117 162-255 (341)
298 TIGR00561 pntA NAD(P) transhyd 95.6 0.036 7.8E-07 45.0 6.0 99 7-117 162-283 (511)
299 PRK13699 putative methylase; P 95.6 0.047 1E-06 39.7 6.0 44 7-52 162-205 (227)
300 PF00107 ADH_zinc_N: Zinc-bind 95.6 0.0059 1.3E-07 39.9 1.3 83 18-117 1-88 (130)
301 COG4301 Uncharacterized conser 95.6 0.14 3.1E-06 37.5 8.3 108 8-117 78-192 (321)
302 cd05188 MDR Medium chain reduc 95.5 0.09 2E-06 38.4 7.6 97 7-117 133-231 (271)
303 cd08239 THR_DH_like L-threonin 95.5 0.2 4.3E-06 38.3 9.7 95 6-117 161-261 (339)
304 TIGR03366 HpnZ_proposed putati 95.4 0.15 3.2E-06 38.1 8.2 95 7-117 119-217 (280)
305 PF06859 Bin3: Bicoid-interact 95.3 0.0073 1.6E-07 38.4 0.8 39 78-117 1-43 (110)
306 cd08230 glucose_DH Glucose deh 95.2 0.15 3.2E-06 39.4 8.1 93 7-117 171-268 (355)
307 PRK10458 DNA cytosine methylas 95.1 0.56 1.2E-05 37.9 11.1 42 9-51 88-129 (467)
308 cd00401 AdoHcyase S-adenosyl-L 95.1 0.077 1.7E-06 42.0 6.1 88 6-117 199-288 (413)
309 COG0686 Ald Alanine dehydrogen 95.0 0.038 8.2E-07 41.8 3.9 100 8-117 167-267 (371)
310 TIGR03451 mycoS_dep_FDH mycoth 94.9 0.094 2E-06 40.6 6.3 98 6-117 174-275 (358)
311 KOG2651 rRNA adenine N-6-methy 94.9 0.056 1.2E-06 41.9 4.7 35 10-44 155-189 (476)
312 PF03269 DUF268: Caenorhabditi 94.8 0.014 3E-07 39.8 1.1 105 9-121 2-114 (177)
313 PF02737 3HCDH_N: 3-hydroxyacy 94.6 0.82 1.8E-05 31.9 9.8 149 12-167 2-179 (180)
314 KOG2671 Putative RNA methylase 94.6 0.022 4.8E-07 43.5 2.0 112 6-119 206-355 (421)
315 KOG2078 tRNA modification enzy 94.6 0.02 4.3E-07 44.9 1.8 50 7-58 248-297 (495)
316 cd08281 liver_ADH_like1 Zinc-d 94.5 0.17 3.7E-06 39.3 6.9 98 6-117 189-289 (371)
317 COG0270 Dcm Site-specific DNA 94.5 0.39 8.5E-06 36.9 8.7 44 9-53 3-46 (328)
318 COG1565 Uncharacterized conser 94.5 0.14 2.9E-06 39.6 6.0 37 8-44 77-122 (370)
319 cd08232 idonate-5-DH L-idonate 94.4 0.26 5.7E-06 37.6 7.6 93 8-117 165-261 (339)
320 PRK01747 mnmC bifunctional tRN 94.4 0.28 6E-06 41.4 8.1 126 10-165 59-225 (662)
321 PRK07066 3-hydroxybutyryl-CoA 94.4 0.6 1.3E-05 35.8 9.3 158 10-173 8-191 (321)
322 PLN02586 probable cinnamyl alc 94.4 0.22 4.7E-06 38.7 7.0 95 7-117 182-277 (360)
323 PLN02827 Alcohol dehydrogenase 94.1 0.76 1.6E-05 35.9 9.7 98 6-117 191-294 (378)
324 PRK13699 putative methylase; P 94.0 0.39 8.6E-06 34.9 7.3 43 74-116 16-70 (227)
325 TIGR00006 S-adenosyl-methyltra 93.9 0.18 4E-06 38.3 5.6 46 6-52 18-64 (305)
326 KOG1099 SAM-dependent methyltr 93.6 0.21 4.5E-06 36.3 5.1 96 10-118 43-163 (294)
327 PLN03154 putative allyl alcoho 93.6 0.7 1.5E-05 35.7 8.6 95 6-117 156-257 (348)
328 cd08245 CAD Cinnamyl alcohol d 93.6 0.83 1.8E-05 34.6 8.9 95 6-117 160-255 (330)
329 PF10354 DUF2431: Domain of un 93.5 1.7 3.7E-05 30.0 12.1 101 15-120 3-127 (166)
330 cd08234 threonine_DH_like L-th 93.2 0.99 2.1E-05 34.3 8.7 95 6-117 157-256 (334)
331 cd08255 2-desacetyl-2-hydroxye 93.1 1.4 3.1E-05 32.4 9.3 93 6-117 95-189 (277)
332 PRK06035 3-hydroxyacyl-CoA deh 93.1 2.9 6.4E-05 31.4 11.0 97 10-115 4-118 (291)
333 TIGR03201 dearomat_had 6-hydro 93.0 1.1 2.4E-05 34.5 8.8 39 6-44 164-203 (349)
334 PF11599 AviRa: RRNA methyltra 92.8 0.24 5.3E-06 35.6 4.5 45 8-53 51-98 (246)
335 PLN02740 Alcohol dehydrogenase 92.8 0.42 9.1E-06 37.4 6.3 96 5-117 195-299 (381)
336 cd08298 CAD2 Cinnamyl alcohol 92.7 1.3 2.8E-05 33.6 8.8 89 7-117 166-255 (329)
337 PRK10309 galactitol-1-phosphat 92.6 1.4 3.1E-05 33.8 8.9 98 6-117 158-259 (347)
338 KOG2912 Predicted DNA methylas 92.4 0.18 4E-06 38.3 3.6 78 12-90 106-190 (419)
339 TIGR00936 ahcY adenosylhomocys 92.3 0.47 1E-05 37.6 6.0 88 6-117 192-281 (406)
340 PRK05476 S-adenosyl-L-homocyst 92.3 0.46 9.9E-06 37.9 5.9 87 7-117 210-298 (425)
341 TIGR00518 alaDH alanine dehydr 92.3 0.21 4.5E-06 39.1 4.0 98 8-117 166-266 (370)
342 COG0604 Qor NADPH:quinone redu 92.3 0.48 1E-05 36.4 5.9 97 6-117 140-240 (326)
343 TIGR02825 B4_12hDH leukotriene 92.2 0.47 1E-05 36.0 5.9 97 6-117 136-236 (325)
344 cd08261 Zn_ADH7 Alcohol dehydr 92.2 0.55 1.2E-05 35.8 6.2 98 6-117 157-257 (337)
345 cd05278 FDH_like Formaldehyde 92.2 0.55 1.2E-05 35.9 6.2 98 6-117 165-266 (347)
346 KOG1098 Putative SAM-dependent 92.2 0.054 1.2E-06 44.5 0.6 35 7-41 43-79 (780)
347 PF00145 DNA_methylase: C-5 cy 91.9 0.35 7.6E-06 36.7 4.7 42 11-53 2-43 (335)
348 KOG0023 Alcohol dehydrogenase, 91.8 0.14 3E-06 39.0 2.3 102 2-117 175-278 (360)
349 PLN02178 cinnamyl-alcohol dehy 91.7 0.77 1.7E-05 35.9 6.5 94 8-117 178-272 (375)
350 cd08294 leukotriene_B4_DH_like 91.7 0.47 1E-05 35.9 5.2 97 6-117 141-240 (329)
351 TIGR02437 FadB fatty oxidation 91.6 2.7 5.8E-05 36.0 10.0 157 10-174 314-500 (714)
352 PRK09260 3-hydroxybutyryl-CoA 91.6 1.5 3.3E-05 32.9 7.8 99 11-117 3-116 (288)
353 cd08231 MDR_TM0436_like Hypoth 91.6 5.2 0.00011 30.8 11.4 96 8-117 177-279 (361)
354 PF11312 DUF3115: Protein of u 91.5 0.63 1.4E-05 35.4 5.6 110 8-117 86-241 (315)
355 KOG0022 Alcohol dehydrogenase, 91.4 1.1 2.4E-05 34.2 6.7 145 4-164 188-345 (375)
356 PF05206 TRM13: Methyltransfer 91.3 0.39 8.5E-06 35.7 4.3 34 8-41 18-57 (259)
357 PLN02514 cinnamyl-alcohol dehy 91.3 1.3 2.9E-05 34.2 7.5 95 7-117 179-274 (357)
358 PRK05708 2-dehydropantoate 2-r 91.3 2.4 5.2E-05 32.2 8.7 97 10-117 3-103 (305)
359 cd08293 PTGR2 Prostaglandin re 91.2 0.89 1.9E-05 34.7 6.4 94 10-117 156-253 (345)
360 COG1250 FadB 3-hydroxyacyl-CoA 91.1 5.6 0.00012 30.4 11.2 104 10-118 4-118 (307)
361 cd08285 NADP_ADH NADP(H)-depen 91.0 1.2 2.6E-05 34.3 7.0 98 6-117 164-265 (351)
362 PF11899 DUF3419: Protein of u 90.8 0.39 8.4E-06 37.7 4.1 46 74-120 291-336 (380)
363 PF05050 Methyltransf_21: Meth 90.6 1.2 2.5E-05 30.0 6.0 43 14-57 1-50 (167)
364 cd08295 double_bond_reductase_ 90.5 3.1 6.7E-05 31.8 8.8 98 6-117 149-250 (338)
365 COG1255 Uncharacterized protei 90.5 0.56 1.2E-05 30.2 3.8 34 8-42 13-47 (129)
366 PF03686 UPF0146: Uncharacteri 90.5 0.57 1.2E-05 30.7 3.9 88 8-117 13-101 (127)
367 cd05285 sorbitol_DH Sorbitol d 90.4 3.2 6.9E-05 31.8 8.8 98 6-117 160-264 (343)
368 PRK08306 dipicolinate synthase 90.4 1.1 2.4E-05 34.0 6.1 92 6-118 149-241 (296)
369 TIGR00497 hsdM type I restrict 90.3 4.8 0.0001 32.9 10.1 107 8-117 217-354 (501)
370 cd08278 benzyl_alcohol_DH Benz 90.3 1.4 3E-05 34.2 6.8 98 6-117 184-284 (365)
371 PRK11524 putative methyltransf 90.1 0.53 1.1E-05 35.4 4.2 44 74-117 23-79 (284)
372 cd08277 liver_alcohol_DH_like 90.0 3.8 8.3E-05 31.8 9.0 98 6-117 182-285 (365)
373 cd01842 SGNH_hydrolase_like_5 90.0 1.5 3.2E-05 30.7 5.8 46 74-119 46-100 (183)
374 PLN02494 adenosylhomocysteinas 90.0 0.8 1.7E-05 37.0 5.2 88 7-117 252-340 (477)
375 cd08233 butanediol_DH_like (2R 89.9 1.4 3E-05 33.9 6.4 98 6-117 170-271 (351)
376 KOG3924 Putative protein methy 89.6 2.2 4.7E-05 33.6 7.0 106 6-117 190-307 (419)
377 PRK05786 fabG 3-ketoacyl-(acyl 89.3 6.2 0.00014 28.2 9.3 37 7-44 3-42 (238)
378 PRK11730 fadB multifunctional 89.3 4 8.7E-05 35.0 9.2 157 10-174 314-500 (715)
379 cd08296 CAD_like Cinnamyl alco 89.1 1.7 3.7E-05 33.1 6.4 97 6-117 161-258 (333)
380 PRK15001 SAM-dependent 23S rib 89.1 6 0.00013 31.2 9.3 95 11-117 47-141 (378)
381 cd08242 MDR_like Medium chain 89.0 4.7 0.0001 30.4 8.7 91 6-117 153-244 (319)
382 TIGR02441 fa_ox_alpha_mit fatt 88.7 4.4 9.6E-05 34.9 9.0 157 10-174 336-522 (737)
383 cd08289 MDR_yhfp_like Yhfp put 88.3 2 4.4E-05 32.4 6.3 94 9-117 147-242 (326)
384 cd08236 sugar_DH NAD(P)-depend 88.2 2.5 5.4E-05 32.3 6.8 97 7-117 158-257 (343)
385 TIGR02819 fdhA_non_GSH formald 88.0 2.2 4.9E-05 33.6 6.5 103 6-117 183-298 (393)
386 PRK07417 arogenate dehydrogena 87.8 4.4 9.4E-05 30.3 7.7 82 11-112 2-85 (279)
387 PTZ00075 Adenosylhomocysteinas 87.8 1.4 3E-05 35.7 5.2 88 6-117 251-340 (476)
388 PRK11154 fadJ multifunctional 87.7 4.5 9.8E-05 34.7 8.5 157 10-173 310-496 (708)
389 cd08240 6_hydroxyhexanoate_dh_ 87.2 2.9 6.3E-05 32.1 6.7 96 8-117 175-273 (350)
390 cd08263 Zn_ADH10 Alcohol dehyd 87.1 2.6 5.5E-05 32.7 6.3 97 7-117 186-286 (367)
391 COG3510 CmcI Cephalosporin hyd 87.0 3.6 7.7E-05 29.3 6.2 97 8-117 69-179 (237)
392 TIGR00027 mthyl_TIGR00027 meth 86.9 6.9 0.00015 29.1 8.2 151 10-165 83-248 (260)
393 cd05281 TDH Threonine dehydrog 86.8 4.5 9.7E-05 30.9 7.5 96 8-117 163-261 (341)
394 PRK06522 2-dehydropantoate 2-r 86.8 7.3 0.00016 29.2 8.5 94 11-117 2-99 (304)
395 cd05279 Zn_ADH1 Liver alcohol 86.7 4.5 9.7E-05 31.4 7.5 98 6-117 181-284 (365)
396 cd08291 ETR_like_1 2-enoyl thi 86.3 3.7 8.1E-05 31.1 6.7 95 8-117 142-241 (324)
397 TIGR00692 tdh L-threonine 3-de 85.9 4.2 9.2E-05 31.0 6.9 97 7-117 160-260 (340)
398 PRK10083 putative oxidoreducta 85.9 4.8 0.0001 30.6 7.2 98 6-117 158-258 (339)
399 PF14740 DUF4471: Domain of un 85.6 0.66 1.4E-05 35.0 2.2 66 76-163 220-285 (289)
400 PRK06249 2-dehydropantoate 2-r 85.3 5.1 0.00011 30.5 7.0 98 9-117 5-105 (313)
401 PRK03369 murD UDP-N-acetylmura 85.0 7.7 0.00017 31.6 8.3 39 6-44 9-48 (488)
402 PF02558 ApbA: Ketopantoate re 85.0 0.95 2.1E-05 30.3 2.7 98 13-121 2-104 (151)
403 COG4017 Uncharacterized protei 84.9 1.3 2.8E-05 31.4 3.2 36 7-43 43-79 (254)
404 PRK01438 murD UDP-N-acetylmura 84.7 15 0.00033 29.7 9.9 75 6-88 13-88 (480)
405 cd05213 NAD_bind_Glutamyl_tRNA 84.6 13 0.00029 28.3 9.0 38 7-44 176-215 (311)
406 PF05430 Methyltransf_30: S-ad 84.6 1.2 2.5E-05 29.2 2.8 61 76-166 48-110 (124)
407 TIGR02440 FadJ fatty oxidation 84.4 11 0.00023 32.4 9.1 158 10-174 305-492 (699)
408 PF11899 DUF3419: Protein of u 84.4 2.1 4.5E-05 33.7 4.6 39 5-44 32-70 (380)
409 PRK06701 short chain dehydroge 84.2 12 0.00026 28.0 8.6 35 6-41 43-80 (290)
410 PRK12921 2-dehydropantoate 2-r 84.0 8.1 0.00018 29.1 7.6 94 11-117 2-101 (305)
411 PRK05808 3-hydroxybutyryl-CoA 83.9 16 0.00034 27.3 10.7 153 11-169 5-185 (282)
412 COG0771 MurD UDP-N-acetylmuram 83.9 7.6 0.00017 31.4 7.5 73 8-88 6-79 (448)
413 PRK07819 3-hydroxybutyryl-CoA 83.7 4.9 0.00011 30.3 6.2 102 10-117 6-120 (286)
414 PRK07533 enoyl-(acyl carrier p 83.6 15 0.00033 26.9 9.7 41 3-43 4-48 (258)
415 cd08279 Zn_ADH_class_III Class 83.2 7.2 0.00016 30.2 7.2 97 7-117 181-281 (363)
416 PRK07530 3-hydroxybutyryl-CoA 83.0 9.8 0.00021 28.6 7.6 98 10-115 5-116 (292)
417 PRK08293 3-hydroxybutyryl-CoA 82.9 5 0.00011 30.1 6.0 97 10-114 4-116 (287)
418 TIGR02356 adenyl_thiF thiazole 82.9 7.5 0.00016 27.6 6.6 36 6-41 18-55 (202)
419 PRK05225 ketol-acid reductoiso 82.8 1.1 2.3E-05 36.1 2.4 88 5-118 32-131 (487)
420 PRK07502 cyclohexadienyl dehyd 82.6 10 0.00023 28.7 7.7 88 10-116 7-98 (307)
421 PLN02702 L-idonate 5-dehydroge 82.4 5.4 0.00012 30.9 6.2 98 6-117 179-284 (364)
422 KOG2352 Predicted spermine/spe 82.1 4 8.6E-05 33.0 5.3 108 8-118 295-416 (482)
423 COG3288 PntA NAD/NADP transhyd 82.1 2.8 6E-05 32.0 4.2 105 6-117 161-280 (356)
424 COG0287 TyrA Prephenate dehydr 82.0 5.7 0.00012 29.9 5.9 84 10-112 4-92 (279)
425 cd08265 Zn_ADH3 Alcohol dehydr 81.9 4.3 9.3E-05 31.8 5.5 99 6-117 201-306 (384)
426 COG3315 O-Methyltransferase in 81.9 12 0.00026 28.5 7.7 153 10-165 94-262 (297)
427 PRK06130 3-hydroxybutyryl-CoA 81.9 9.1 0.0002 29.0 7.2 35 10-45 5-41 (311)
428 PF01795 Methyltransf_5: MraW 81.9 2.3 5.1E-05 32.4 3.8 45 6-51 18-63 (310)
429 PRK00141 murD UDP-N-acetylmura 81.8 12 0.00026 30.4 8.1 40 3-42 9-49 (473)
430 PRK05396 tdh L-threonine 3-deh 81.7 7.2 0.00016 29.7 6.7 96 8-117 163-262 (341)
431 PRK01710 murD UDP-N-acetylmura 81.7 8 0.00017 31.2 7.1 37 6-42 11-48 (458)
432 PRK12480 D-lactate dehydrogena 81.2 6.9 0.00015 30.2 6.3 90 6-117 143-233 (330)
433 cd05283 CAD1 Cinnamyl alcohol 81.1 12 0.00027 28.5 7.7 92 7-117 168-262 (337)
434 COG1893 ApbA Ketopantoate redu 81.1 11 0.00024 28.8 7.4 96 11-117 2-100 (307)
435 PF03446 NAD_binding_2: NAD bi 81.1 0.68 1.5E-05 31.7 0.7 83 12-115 4-91 (163)
436 PF01210 NAD_Gly3P_dh_N: NAD-d 81.0 3.3 7.1E-05 28.1 4.1 102 12-120 2-105 (157)
437 PRK08324 short chain dehydroge 80.8 12 0.00025 32.0 8.0 38 6-44 419-459 (681)
438 cd08241 QOR1 Quinone oxidoredu 80.2 7.3 0.00016 29.0 6.2 97 6-117 137-237 (323)
439 PF02153 PDH: Prephenate dehyd 80.2 1.5 3.3E-05 32.5 2.3 72 23-113 2-74 (258)
440 PRK15057 UDP-glucose 6-dehydro 80.0 6.5 0.00014 31.1 5.9 33 12-45 3-36 (388)
441 cd05284 arabinose_DH_like D-ar 80.0 21 0.00045 27.1 8.6 97 6-117 165-265 (340)
442 PRK07806 short chain dehydroge 79.8 20 0.00043 25.8 8.6 34 7-41 4-40 (248)
443 TIGR02279 PaaC-3OHAcCoADH 3-hy 79.8 15 0.00034 30.1 8.1 151 10-168 6-186 (503)
444 TIGR02818 adh_III_F_hyde S-(hy 79.8 5.7 0.00012 30.9 5.5 98 6-117 183-286 (368)
445 cd08274 MDR9 Medium chain dehy 79.7 8 0.00017 29.5 6.3 92 6-117 175-272 (350)
446 cd08286 FDH_like_ADH2 formalde 79.4 11 0.00024 28.8 7.0 97 7-117 165-265 (345)
447 PRK13243 glyoxylate reductase; 79.1 4.3 9.4E-05 31.3 4.6 38 6-43 147-185 (333)
448 PRK00045 hemA glutamyl-tRNA re 79.0 31 0.00068 27.6 9.9 38 7-44 180-219 (423)
449 PF03721 UDPG_MGDP_dh_N: UDP-g 79.0 5.4 0.00012 28.0 4.7 102 11-116 2-118 (185)
450 PRK11064 wecC UDP-N-acetyl-D-m 79.0 31 0.00068 27.6 9.8 34 10-44 4-39 (415)
451 PRK09489 rsmC 16S ribosomal RN 78.9 6.9 0.00015 30.4 5.6 98 3-117 14-111 (342)
452 PRK13403 ketol-acid reductoiso 78.8 7.6 0.00017 30.0 5.7 92 5-117 12-105 (335)
453 cd05280 MDR_yhdh_yhfp Yhdh and 78.3 6.5 0.00014 29.5 5.4 93 9-117 147-242 (325)
454 PRK12475 thiamine/molybdopteri 78.3 16 0.00034 28.4 7.4 35 7-41 22-58 (338)
455 PRK00094 gpsA NAD(P)H-dependen 77.9 12 0.00026 28.4 6.8 99 11-117 3-104 (325)
456 COG0275 Predicted S-adenosylme 77.9 8.3 0.00018 29.4 5.5 47 5-52 20-68 (314)
457 KOG0821 Predicted ribosomal RN 77.8 4.5 9.7E-05 29.5 3.9 43 2-44 44-86 (326)
458 cd08270 MDR4 Medium chain dehy 77.6 17 0.00037 27.0 7.4 88 8-117 132-221 (305)
459 PRK09422 ethanol-active dehydr 77.6 7.8 0.00017 29.4 5.7 98 6-117 160-260 (338)
460 cd01492 Aos1_SUMO Ubiquitin ac 77.5 22 0.00048 25.2 7.5 35 7-41 19-55 (197)
461 COG5379 BtaA S-adenosylmethion 77.4 5.6 0.00012 30.3 4.5 38 6-44 61-98 (414)
462 COG1748 LYS9 Saccharopine dehy 77.3 9.8 0.00021 30.1 6.1 73 10-88 2-78 (389)
463 PF12692 Methyltransf_17: S-ad 77.2 5.3 0.00011 27.1 3.9 31 10-40 30-61 (160)
464 cd01075 NAD_bind_Leu_Phe_Val_D 77.2 9.8 0.00021 27.0 5.7 40 5-44 24-64 (200)
465 cd08266 Zn_ADH_like1 Alcohol d 77.1 25 0.00053 26.4 8.3 91 7-117 165-264 (342)
466 cd08243 quinone_oxidoreductase 77.1 11 0.00024 28.1 6.3 91 7-117 141-237 (320)
467 cd08260 Zn_ADH6 Alcohol dehydr 77.0 11 0.00023 28.8 6.3 98 6-117 163-263 (345)
468 COG0863 DNA modification methy 76.9 9.3 0.0002 28.6 5.9 46 6-53 220-265 (302)
469 PF01488 Shikimate_DH: Shikima 76.9 6.3 0.00014 26.0 4.4 75 6-88 9-85 (135)
470 PF08468 MTS_N: Methyltransfer 76.9 1.1 2.3E-05 30.7 0.6 99 2-117 6-104 (155)
471 cd00650 LDH_MDH_like NAD-depen 76.7 13 0.00029 27.5 6.5 13 32-44 27-39 (263)
472 COG1062 AdhC Zn-dependent alco 76.5 9.2 0.0002 29.7 5.5 146 5-165 182-337 (366)
473 KOG1209 1-Acyl dihydroxyaceton 76.4 10 0.00022 27.7 5.4 35 8-42 6-43 (289)
474 PRK08655 prephenate dehydrogen 76.2 17 0.00036 29.3 7.3 84 11-114 2-88 (437)
475 PRK13771 putative alcohol dehy 76.1 17 0.00038 27.5 7.2 92 7-117 161-254 (334)
476 PRK07574 formate dehydrogenase 75.8 8.9 0.00019 30.4 5.5 91 6-115 189-281 (385)
477 PF02254 TrkA_N: TrkA-N domain 75.7 5.4 0.00012 25.2 3.7 85 17-116 4-94 (116)
478 PF02826 2-Hacid_dh_C: D-isome 75.3 6.8 0.00015 27.2 4.4 39 6-44 33-72 (178)
479 cd05289 MDR_like_2 alcohol deh 75.2 28 0.0006 25.6 8.0 93 6-117 142-237 (309)
480 PF01262 AlaDh_PNT_C: Alanine 75.2 9.4 0.0002 26.2 5.0 41 4-44 15-56 (168)
481 TIGR02354 thiF_fam2 thiamine b 75.2 26 0.00056 24.9 7.4 34 7-40 19-54 (200)
482 PRK08818 prephenate dehydrogen 74.6 7.8 0.00017 30.5 4.9 33 8-40 3-38 (370)
483 cd08292 ETR_like_2 2-enoyl thi 74.2 15 0.00033 27.5 6.4 97 6-117 137-237 (324)
484 PRK15469 ghrA bifunctional gly 74.1 5.2 0.00011 30.6 3.8 89 7-116 134-224 (312)
485 cd08287 FDH_like_ADH3 formalde 74.0 22 0.00047 27.1 7.3 97 7-117 167-267 (345)
486 cd01065 NAD_bind_Shikimate_DH 73.8 23 0.00049 23.5 6.6 38 7-44 17-56 (155)
487 COG1004 Ugd Predicted UDP-gluc 73.7 8.4 0.00018 30.5 4.8 34 11-44 2-36 (414)
488 cd08300 alcohol_DH_class_III c 73.4 11 0.00025 29.2 5.7 98 6-117 184-287 (368)
489 PTZ00142 6-phosphogluconate de 73.1 18 0.00039 29.5 6.8 89 12-114 4-97 (470)
490 PF07101 DUF1363: Protein of u 73.1 1.3 2.9E-05 27.3 0.3 13 12-24 6-18 (124)
491 cd08269 Zn_ADH9 Alcohol dehydr 73.1 24 0.00053 26.2 7.3 97 7-117 128-228 (312)
492 COG3392 Adenine-specific DNA m 72.9 3.1 6.7E-05 31.0 2.2 35 6-41 25-59 (330)
493 PRK06124 gluconate 5-dehydroge 72.8 26 0.00056 25.4 7.2 77 7-87 9-97 (256)
494 cd05286 QOR2 Quinone oxidoredu 72.5 14 0.0003 27.3 5.8 97 6-117 134-234 (320)
495 TIGR02853 spore_dpaA dipicolin 72.2 8.2 0.00018 29.2 4.4 39 6-44 148-187 (287)
496 PRK05650 short chain dehydroge 72.0 36 0.00079 24.9 7.9 74 11-88 2-87 (270)
497 cd00757 ThiF_MoeB_HesA_family 71.6 18 0.00039 26.2 6.0 35 7-41 19-55 (228)
498 PRK01390 murD UDP-N-acetylmura 71.6 15 0.00033 29.6 6.1 37 7-43 7-44 (460)
499 cd08301 alcohol_DH_plants Plan 71.2 13 0.00028 28.9 5.5 98 6-117 185-288 (369)
500 KOG1201 Hydroxysteroid 17-beta 71.2 15 0.00033 27.9 5.5 45 5-50 34-81 (300)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.86 E-value=1.7e-21 Score=139.85 Aligned_cols=149 Identities=18% Similarity=0.261 Sum_probs=104.0
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
+|.+|||+|||||..++.+++.. ..+|+++|+|+.|| +.+++.....+... +..+ ...+..+|+++++||+|.++.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML-~~a~~k~~~~~~~~-i~fv-~~dAe~LPf~D~sFD~vt~~f 127 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESML-EVAREKLKKKGVQN-VEFV-VGDAENLPFPDNSFDAVTISF 127 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHH-HHHHHHhhccCccc-eEEE-EechhhCCCCCCccCEEEeee
Confidence 78999999999999999998875 35799999999999 66666665544422 2222 223457889999999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC------------------CCCCCCCCc---eEeeeeccCCC
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE------------------GTEGLPWPA---FLMSWRRRIGK 145 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~------------------~~~~~~~~~---~~~~~~~~~~~ 145 (175)
.+.+.. +...+|+|++|+|||||++++......... ..+....+. ++....+.+.
T Consensus 128 glrnv~---d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p- 203 (238)
T COG2226 128 GLRNVT---DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFP- 203 (238)
T ss_pred hhhcCC---CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCC-
Confidence 996665 445999999999999998888743332211 111110110 1111122222
Q ss_pred cchhHHHHHHHHcCCeeEE
Q 030565 146 EDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 146 ~~~~~~~~~~~~~g~~~~~ 164 (175)
+.+++.+.++++||....
T Consensus 204 -~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 204 -DQEELKQMIEKAGFEEVR 221 (238)
T ss_pred -CHHHHHHHHHhcCceEEe
Confidence 258899999999998665
No 2
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.85 E-value=4.2e-21 Score=144.50 Aligned_cols=159 Identities=15% Similarity=0.152 Sum_probs=105.3
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||||||+|.++..+++. +.+|+|+|+++.++ +.++++.........+..+..+. +.+++.+++||+|++.+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i-~~Ar~~~~~~~~~~~i~~~~~da-e~l~~~~~~FD~Vi~~~ 206 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNV-KIARLHADMDPVTSTIEYLCTTA-EKLADEGRKFDAVLSLE 206 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHH-HHHHHHHHhcCcccceeEEecCH-HHhhhccCCCCEEEEhh
Confidence 46789999999999999999875 88999999999998 66665544433212222222221 23445567999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC--CCCCC-CCC-ceEeee-eccCCCcchhHHHHHHHHcCCe
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTEGL-PWP-AFLMSW-RRRIGKEDETIFFTSCENAGLE 161 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~--~~~~~-~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ 161 (175)
+++|..+ ...+++++.++|||||.+++.+....... ..... ..- .+.... ..+....+..++.++++++||+
T Consensus 207 vLeHv~d---~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~ 283 (322)
T PLN02396 207 VIEHVAN---PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVD 283 (322)
T ss_pred HHHhcCC---HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCe
Confidence 9966664 44999999999999999999854432100 00000 000 000000 0111122468999999999999
Q ss_pred eEEecceEEE
Q 030565 162 VKHLGSRVYC 171 (175)
Q Consensus 162 ~~~~~~~~~~ 171 (175)
+.++....|-
T Consensus 284 i~~~~G~~~~ 293 (322)
T PLN02396 284 VKEMAGFVYN 293 (322)
T ss_pred EEEEeeeEEc
Confidence 9999777764
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.85 E-value=1.8e-21 Score=140.71 Aligned_cols=152 Identities=15% Similarity=0.154 Sum_probs=74.7
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..+|.+|||+|||||.++..+++..+ .+|+++|+|+.|+ +.++++....+.. ++..+. .....+|+++++||+|+
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML-~~a~~k~~~~~~~-~i~~v~-~da~~lp~~d~sfD~v~ 121 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGML-EVARKKLKREGLQ-NIEFVQ-GDAEDLPFPDNSFDAVT 121 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHH-HHHHHHHHHTT---SEEEEE--BTTB--S-TT-EEEEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHH-HHHHHHHHhhCCC-CeeEEE-cCHHHhcCCCCceeEEE
Confidence 45688999999999999999988653 5799999999999 7777666665542 233332 22356788899999999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCC-----------------CCCCCCCC---CceEeeeeccC
Q 030565 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQG-----------------EGTEGLPW---PAFLMSWRRRI 143 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~-----------------~~~~~~~~---~~~~~~~~~~~ 143 (175)
++..+.+.+ ++.++++|++|+|||||++++......+. ...+..+. ..++....+.+
T Consensus 122 ~~fglrn~~---d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f 198 (233)
T PF01209_consen 122 CSFGLRNFP---DRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRF 198 (233)
T ss_dssp EES-GGG-S---SHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH------------------------------
T ss_pred HHhhHHhhC---CHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeecccccccccccccccccccccccccccc
Confidence 999884444 56699999999999999999883333221 01111111 11222222223
Q ss_pred CCcchhHHHHHHHHcCCeeEEe
Q 030565 144 GKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 144 ~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
.. .+++.++++++||+..+.
T Consensus 199 ~~--~~~~~~~l~~~Gf~~v~~ 218 (233)
T PF01209_consen 199 PS--PEELKELLEEAGFKNVEY 218 (233)
T ss_dssp ----------------------
T ss_pred cc--cccccccccccccccccc
Confidence 22 588999999999985544
No 4
>PLN02244 tocopherol O-methyltransferase
Probab=99.85 E-value=3.9e-20 Score=141.11 Aligned_cols=156 Identities=11% Similarity=0.098 Sum_probs=106.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++++|||||||+|.++..+++..+.+|+|+|+|+.|+ +.++++....+...++..+..+. ..+++.+++||+|++..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i-~~a~~~~~~~g~~~~v~~~~~D~-~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQA-ARANALAAAQGLSDKVSFQVADA-LNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHH-HHHHHHHHhcCCCCceEEEEcCc-ccCCCCCCCccEEEECC
Confidence 46789999999999999999987788999999999998 66666666555533344443333 23567788999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC---CCCCCCCCceE----ee-eeccCCCcchhHHHHHHHHc
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE---GTEGLPWPAFL----MS-WRRRIGKEDETIFFTSCENA 158 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~---~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~ 158 (175)
+++|.. +...++++++++|||||++++......... ..........+ .. +...+ .+..++.++++++
T Consensus 195 ~~~h~~---d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~--~s~~~~~~~l~~a 269 (340)
T PLN02244 195 SGEHMP---DKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAW--CSTSDYVKLAESL 269 (340)
T ss_pred chhccC---CHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCC--CCHHHHHHHHHHC
Confidence 986655 455999999999999999999754332111 11100000000 00 01111 1358999999999
Q ss_pred CCeeEEecceE
Q 030565 159 GLEVKHLGSRV 169 (175)
Q Consensus 159 g~~~~~~~~~~ 169 (175)
||+..+..+..
T Consensus 270 Gf~~v~~~d~s 280 (340)
T PLN02244 270 GLQDIKTEDWS 280 (340)
T ss_pred CCCeeEeeeCc
Confidence 99987776543
No 5
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.84 E-value=3.4e-20 Score=119.97 Aligned_cols=108 Identities=19% Similarity=0.274 Sum_probs=83.3
Q ss_pred CCCcEEEeCCCccHHHHHHHH-hCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 8 ERRRCIELGSGTGALAIFLRK-AMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~-~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
++++|||||||+|.++..+++ ..+.+|+++|+|+.++ +.++++........++..+..+. .......+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEML-EIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHH-HHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence 578999999999999999988 3588999999999998 77777775555555566555544 22233345799999998
Q ss_pred -cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 87 -ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 -~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++.+....++..++++++.+.|+|||++++.
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 4432333467789999999999999998875
No 6
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.83 E-value=3.9e-20 Score=136.16 Aligned_cols=154 Identities=16% Similarity=0.168 Sum_probs=102.5
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
++.+|||+|||+|..+..+++. +.+|+++|+|+.|+ +.++++....+...++..+..+..+..+..+++||+|+++.+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l-~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMI-QRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 4679999999999999999887 78999999999998 677777666555333344433333322345679999999999
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC--CCCCCCCC----ceE----eeeeccCCCcchhHHHHHHHH
Q 030565 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTEGLPWP----AFL----MSWRRRIGKEDETIFFTSCEN 157 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~--~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~ 157 (175)
+++.. ++..+++++.++|||||.+++..+...... ..+...+. ... ......+ ..+.+++.+++++
T Consensus 122 l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~l~~~l~~ 197 (255)
T PRK11036 122 LEWVA---DPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDY-PLDPEQVYQWLEE 197 (255)
T ss_pred HHhhC---CHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCC-CCCHHHHHHHHHH
Confidence 95554 345899999999999999988744432110 00000000 000 0000111 1245889999999
Q ss_pred cCCeeEEecc
Q 030565 158 AGLEVKHLGS 167 (175)
Q Consensus 158 ~g~~~~~~~~ 167 (175)
+||++++...
T Consensus 198 aGf~~~~~~g 207 (255)
T PRK11036 198 AGWQIMGKTG 207 (255)
T ss_pred CCCeEeeeee
Confidence 9999876543
No 7
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.83 E-value=9.8e-20 Score=136.60 Aligned_cols=155 Identities=11% Similarity=-0.030 Sum_probs=96.3
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...++++|||+|||+|.++..++......|+|+|+|+.|+. .++...........+.....+.. .++. .++||+|++
T Consensus 118 ~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~-q~~~~~~~~~~~~~v~~~~~~ie-~lp~-~~~FD~V~s 194 (314)
T TIGR00452 118 SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLC-QFEAVRKLLDNDKRAILEPLGIE-QLHE-LYAFDTVFS 194 (314)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHH-HHHHHHHHhccCCCeEEEECCHH-HCCC-CCCcCEEEE
Confidence 45678999999999999999988874457999999999873 32211111111112222222222 2232 348999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
..+++|..+ +..++++++++|+|||.+++.+............+... .......+...+...+.++++++||+..+
T Consensus 195 ~gvL~H~~d---p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~r-y~k~~nv~flpS~~~L~~~L~~aGF~~V~ 270 (314)
T TIGR00452 195 MGVLYHRKS---PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDR-YAKMKNVYFIPSVSALKNWLEKVGFENFR 270 (314)
T ss_pred cchhhccCC---HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHH-HHhccccccCCCHHHHHHHHHHCCCeEEE
Confidence 999977654 44899999999999999998743322111111000000 00011111122468899999999999776
Q ss_pred ec
Q 030565 165 LG 166 (175)
Q Consensus 165 ~~ 166 (175)
+.
T Consensus 271 i~ 272 (314)
T TIGR00452 271 IL 272 (314)
T ss_pred EE
Confidence 54
No 8
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.83 E-value=1.9e-19 Score=136.22 Aligned_cols=154 Identities=14% Similarity=0.069 Sum_probs=96.7
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++++|||||||+|.++..++..+...|+|+|+|+.++.+ .+...........+..+..+. +.+++ +++||+|++.
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q-~~a~~~~~~~~~~i~~~~~d~-e~lp~-~~~FD~V~s~ 196 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQ-FEAVRKLLGNDQRAHLLPLGI-EQLPA-LKAFDTVFSM 196 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHH-HHHHHHhcCCCCCeEEEeCCH-HHCCC-cCCcCEEEEC
Confidence 45789999999999999999988855569999999988732 221111111111233333322 23444 6789999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
.+++|..+ +..+++++++.|+|||.+++..............+... +......+...+...+.++++++||+..++
T Consensus 197 ~vl~H~~d---p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~-y~~~~~~~~lps~~~l~~~L~~aGF~~i~~ 272 (322)
T PRK15068 197 GVLYHRRS---PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDR-YAKMRNVYFIPSVPALKNWLERAGFKDVRI 272 (322)
T ss_pred ChhhccCC---HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhH-HhcCccceeCCCHHHHHHHHHHcCCceEEE
Confidence 99976654 45899999999999999988632211111000000000 001111111224689999999999997766
Q ss_pred c
Q 030565 166 G 166 (175)
Q Consensus 166 ~ 166 (175)
.
T Consensus 273 ~ 273 (322)
T PRK15068 273 V 273 (322)
T ss_pred E
Confidence 4
No 9
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.82 E-value=1.4e-20 Score=133.40 Aligned_cols=155 Identities=15% Similarity=0.118 Sum_probs=104.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.+|.+|||+|||-|.++..+|+. |.+|+|+|+++.+| +.++.....++... ....... +++....++||+|++..
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I-~~Ak~ha~e~gv~i--~y~~~~~-edl~~~~~~FDvV~cmE 132 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPI-EVAKLHALESGVNI--DYRQATV-EDLASAGGQFDVVTCME 132 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHH-HHHHHhhhhccccc--cchhhhH-HHHHhcCCCccEEEEhh
Confidence 58899999999999999999998 89999999999998 88887777777731 1111111 12222337999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-------CCCCCCCCceEeeeeccCCCcchhHHHHHHHHcC
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-------GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAG 159 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (175)
++.|.+ +...+++.+.+.+||||.+++++....... .++...+-.-...-.+.+-. ++++...+..++
T Consensus 133 VlEHv~---dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~ir--p~El~~~~~~~~ 207 (243)
T COG2227 133 VLEHVP---DPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIK--PAELIRWLLGAN 207 (243)
T ss_pred HHHccC---CHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcC--HHHHHHhcccCC
Confidence 995554 455899999999999999999865542211 01000000000000011111 477778888889
Q ss_pred CeeEEecceEEE
Q 030565 160 LEVKHLGSRVYC 171 (175)
Q Consensus 160 ~~~~~~~~~~~~ 171 (175)
+++.+.....|.
T Consensus 208 ~~~~~~~g~~y~ 219 (243)
T COG2227 208 LKIIDRKGLTYN 219 (243)
T ss_pred ceEEeecceEec
Confidence 999888777663
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.82 E-value=7.5e-20 Score=135.02 Aligned_cols=153 Identities=13% Similarity=0.133 Sum_probs=102.2
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...++.+|||||||+|..+..+++..+.+|+++|+|+.++ +.++.+... ...+..+..+.. ..++++++||+|++
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~-~~a~~~~~~---~~~i~~~~~D~~-~~~~~~~~FD~V~s 123 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMV-NIAKLRNSD---KNKIEFEANDIL-KKDFPENTFDMIYS 123 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHH-HHHHHHcCc---CCceEEEECCcc-cCCCCCCCeEEEEE
Confidence 3457889999999999999999876678999999999998 555544322 112233322222 34566789999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEee-eeccCCCcchhHHHHHHHHcCCeeE
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMS-WRRRIGKEDETIFFTSCENAGLEVK 163 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (175)
.++++|.. ..+...++++++++|||||.++++.+....... . ...+... ..+.+...+..++.++++++||++.
T Consensus 124 ~~~l~h~~-~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 198 (263)
T PTZ00098 124 RDAILHLS-YADKKKLFEKCYKWLKPNGILLITDYCADKIEN-W---DEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNV 198 (263)
T ss_pred hhhHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEeccccccC-c---HHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCee
Confidence 98875543 346679999999999999999997544322110 0 0000000 0111222346899999999999977
Q ss_pred Eecc
Q 030565 164 HLGS 167 (175)
Q Consensus 164 ~~~~ 167 (175)
...+
T Consensus 199 ~~~d 202 (263)
T PTZ00098 199 VAKD 202 (263)
T ss_pred eEEe
Confidence 7644
No 11
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.82 E-value=1.7e-19 Score=133.00 Aligned_cols=110 Identities=16% Similarity=0.212 Sum_probs=80.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhh--CCCCCCcceeeccCCCCCCCCCCCccEE
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTT--NGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
.++.+|||+|||+|.++..+++..+ .+|+|+|+|++|+ +.++++... .....++..+..+ ...+++++++||+|
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml-~~A~~r~~~~~~~~~~~i~~~~~d-~~~lp~~~~sfD~V 149 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQL-AVAASRQELKAKSCYKNIEWIEGD-ATDLPFDDCYFDAI 149 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhhhhccCCCeEEEEcc-cccCCCCCCCEeEE
Confidence 4678999999999999999887643 5899999999998 555433221 1111122333222 23467778899999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
+++.++++.. ++..++++++|+|||||++++.....
T Consensus 150 ~~~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 150 TMGYGLRNVV---DRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred EEecccccCC---CHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 9999985544 45699999999999999998885443
No 12
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.81 E-value=1.8e-19 Score=112.87 Aligned_cols=95 Identities=19% Similarity=0.391 Sum_probs=73.0
Q ss_pred EEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcccCcc
Q 030565 13 IELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVK 92 (175)
Q Consensus 13 LDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~ 92 (175)
||+|||+|..+..+++..+.+|+++|++++++ +.+++....... .....+ ...+++++++||+|++..++++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~-~~~~~~~~~~~~----~~~~~d-~~~l~~~~~sfD~v~~~~~~~~~- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEML-EQARKRLKNEGV----SFRQGD-AEDLPFPDNSFDVVFSNSVLHHL- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHH-HHHHHHTTTSTE----EEEESB-TTSSSS-TT-EEEEEEESHGGGS-
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHH-HHHHhcccccCc----hheeeh-HHhCccccccccccccccceeec-
Confidence 89999999999999887678899999999998 666665544333 233333 34568889999999999999655
Q ss_pred cchHHHHHHHHHHhhcCCCCceee
Q 030565 93 QYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 93 ~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
++..++++++.|+|||||.+++
T Consensus 74 --~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 --EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp --SHHHHHHHHHHHHEEEEEEEEE
T ss_pred --cCHHHHHHHHHHHcCcCeEEeC
Confidence 5677999999999999998875
No 13
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.80 E-value=6.8e-19 Score=128.70 Aligned_cols=155 Identities=13% Similarity=0.162 Sum_probs=112.4
Q ss_pred CccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030565 3 HREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
...+.+|.+|||||||.|.+++++|++.+.+|+|+++|+++. +.+++.+...++..++.....++. ...+.||-|
T Consensus 67 kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~-~~~~~r~~~~gl~~~v~v~l~d~r----d~~e~fDrI 141 (283)
T COG2230 67 KLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQL-AYAEKRIAARGLEDNVEVRLQDYR----DFEEPFDRI 141 (283)
T ss_pred hcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHH-HHHHHHHHHcCCCcccEEEecccc----cccccccee
Confidence 345678999999999999999999999889999999999997 888888888888544444443333 223459999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeee-ccCCCcchhHHHHHHHHcCCe
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWR-RRIGKEDETIFFTSCENAGLE 161 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ 161 (175)
+|..++.|.. .+.....++.+.++|+|||.+++......+.... ..+.|+..+. +.....+.....+.++++||.
T Consensus 142 vSvgmfEhvg-~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~---~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~ 217 (283)
T COG2230 142 VSVGMFEHVG-KENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR---RFPDFIDKYIFPGGELPSISEILELASEAGFV 217 (283)
T ss_pred eehhhHHHhC-cccHHHHHHHHHhhcCCCceEEEEEecCCCcccc---cchHHHHHhCCCCCcCCCHHHHHHHHHhcCcE
Confidence 9999985554 5668899999999999999988874433332211 2233333322 111122347777779999999
Q ss_pred eEEec
Q 030565 162 VKHLG 166 (175)
Q Consensus 162 ~~~~~ 166 (175)
+.+..
T Consensus 218 v~~~~ 222 (283)
T COG2230 218 VLDVE 222 (283)
T ss_pred EehHh
Confidence 87653
No 14
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.80 E-value=2.3e-19 Score=132.52 Aligned_cols=158 Identities=15% Similarity=0.175 Sum_probs=99.9
Q ss_pred CccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030565 3 HREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
...+.+|.+|||||||.|.+++.++++.+++|+|+.+|+++. +.+++.+...++...+.....++ ..+ +.+||.|
T Consensus 57 ~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~-~~a~~~~~~~gl~~~v~v~~~D~---~~~-~~~fD~I 131 (273)
T PF02353_consen 57 KLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQA-EYARERIREAGLEDRVEVRLQDY---RDL-PGKFDRI 131 (273)
T ss_dssp TTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHH-HHHHHHHHCSTSSSTEEEEES-G---GG----S-SEE
T ss_pred HhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHH-HHHHHHHHhcCCCCceEEEEeec---ccc-CCCCCEE
Confidence 346778999999999999999999998899999999999997 88888888877754444433333 222 2399999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCC-CCCCCceEeeee-ccCCCcchhHHHHHHHHcCC
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTE-GLPWPAFLMSWR-RRIGKEDETIFFTSCENAGL 160 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~ 160 (175)
++..++.|.. .++...+++++.+.|+|||++++............ ......|+..+. +.....+...+...++++||
T Consensus 132 vSi~~~Ehvg-~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l 210 (273)
T PF02353_consen 132 VSIEMFEHVG-RKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGL 210 (273)
T ss_dssp EEESEGGGTC-GGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-
T ss_pred EEEechhhcC-hhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCE
Confidence 9999996554 46777999999999999999988733322211000 001112222221 11112235777788999999
Q ss_pred eeEEec
Q 030565 161 EVKHLG 166 (175)
Q Consensus 161 ~~~~~~ 166 (175)
++.++.
T Consensus 211 ~v~~~~ 216 (273)
T PF02353_consen 211 EVEDVE 216 (273)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 988774
No 15
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.80 E-value=2.3e-18 Score=122.05 Aligned_cols=106 Identities=17% Similarity=0.348 Sum_probs=79.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++++|||+|||+|..+..+++. +.+|+|+|+|+.++ +.++++....+.. .+.....+.. ..++ +++||+|+++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i-~~a~~~~~~~~~~-~v~~~~~d~~-~~~~-~~~fD~I~~~ 102 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSI-ANLERIKAAENLD-NLHTAVVDLN-NLTF-DGEYDFILST 102 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHH-HHHHHHHHHcCCC-cceEEecChh-hCCc-CCCcCEEEEe
Confidence 446789999999999999999987 78999999999998 6666666665551 2233333322 2223 4579999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.++++. ..+++..+++++.++|+|||.+++.
T Consensus 103 ~~~~~~-~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 103 VVLMFL-EAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred cchhhC-CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 998444 3557789999999999999986554
No 16
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.79 E-value=9.7e-19 Score=139.19 Aligned_cols=150 Identities=12% Similarity=0.183 Sum_probs=101.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||||||+|..+..+++..+.+|+|+|+|+.++ +.++++... ...++..+..+.. ..++++++||+|++..
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l-~~A~~~~~~--~~~~v~~~~~d~~-~~~~~~~~fD~I~s~~ 340 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMI-SFALERAIG--RKCSVEFEVADCT-KKTYPDNSFDVIYSRD 340 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHH-HHHHHHhhc--CCCceEEEEcCcc-cCCCCCCCEEEEEECC
Confidence 45789999999999999999887788999999999998 565555432 2122333333332 2345567999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEec
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 166 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (175)
+++|..+ ...++++++++|+|||++++..+......... ....+.. ...+...+...+.++++++||++..+.
T Consensus 341 ~l~h~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~--~~~~~~~--~~g~~~~~~~~~~~~l~~aGF~~i~~~ 413 (475)
T PLN02336 341 TILHIQD---KPALFRSFFKWLKPGGKVLISDYCRSPGTPSP--EFAEYIK--QRGYDLHDVQAYGQMLKDAGFDDVIAE 413 (475)
T ss_pred cccccCC---HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcH--HHHHHHH--hcCCCCCCHHHHHHHHHHCCCeeeeee
Confidence 9966654 45999999999999999998855432211000 0000111 111222345889999999999987664
Q ss_pred c
Q 030565 167 S 167 (175)
Q Consensus 167 ~ 167 (175)
+
T Consensus 414 d 414 (475)
T PLN02336 414 D 414 (475)
T ss_pred c
Confidence 3
No 17
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.78 E-value=9.2e-20 Score=125.03 Aligned_cols=141 Identities=21% Similarity=0.262 Sum_probs=93.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++++|||+|||+|.++..+++. +.+|+++|+++.++. . . ......+.. .....++++||+|+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~-~---------~--~~~~~~~~~-~~~~~~~~~fD~i~~~ 85 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIE-K---------R--NVVFDNFDA-QDPPFPDGSFDLIICN 85 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHH-H---------T--TSEEEEEEC-HTHHCHSSSEEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHh-h---------h--hhhhhhhhh-hhhhccccchhhHhhH
Confidence 456899999999999999999776 779999999999973 3 1 111111111 1223456799999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
++++|.. ++..+++++.++|||||.+++..+............+.. ...........+..++.++++++||++.+
T Consensus 86 ~~l~~~~---d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 86 DVLEHLP---DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRY-DRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp SSGGGSS---HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCG-TCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHhhcc---cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCC-cCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 9996665 566999999999999999999866542110000000000 00000001112358999999999999865
No 18
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.78 E-value=3.5e-18 Score=121.57 Aligned_cols=154 Identities=14% Similarity=0.122 Sum_probs=106.9
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCC-------CcEEEEeCChHHHHHHHHHHHhhCCCCCCc-ceeeccCCCCCCCCC
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMN-------LDITTSDYNDQEIEDNIAYNSTTNGITPAL-PHIKHSWGDAFPIPN 76 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~-------~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 76 (175)
....+.++||++||||-.+..+.+... .+|+.+|+||.|| ...++......+...- .......++.+|+++
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL-~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd 175 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML-AVGKQRAKKRPLKASSRVEWVEGDAEDLPFDD 175 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH-HHHHHHHhhcCCCcCCceEEEeCCcccCCCCC
Confidence 344679999999999999988877652 5799999999999 4444444334442221 111222356788999
Q ss_pred CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCC--C---------------CCCC---CCCCceE
Q 030565 77 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQG--E---------------GTEG---LPWPAFL 136 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~--~---------------~~~~---~~~~~~~ 136 (175)
++||...++..+.++.+++ ++++|++|+|||||+|++......+. . .++. .....++
T Consensus 176 ~s~D~yTiafGIRN~th~~---k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYL 252 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNVTHIQ---KALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYL 252 (296)
T ss_pred CcceeEEEecceecCCCHH---HHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhH
Confidence 9999999999997887655 99999999999999999874333221 0 1110 1111244
Q ss_pred eeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030565 137 MSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
....+++.. .++|..+.+++||....
T Consensus 253 veSI~rfp~--qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 253 VESIRRFPP--QEEFASMIEDAGFSSVN 278 (296)
T ss_pred HhhhhcCCC--HHHHHHHHHHcCCcccc
Confidence 444455555 68999999999998665
No 19
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.78 E-value=5.5e-18 Score=124.79 Aligned_cols=147 Identities=18% Similarity=0.263 Sum_probs=95.3
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||+|||+|.++..+++.. +.+|+|+|+|+.|+ +.++.. +. ..+..+.. .+ ..+++||+|++
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~-~~a~~~----~~----~~~~~d~~-~~-~~~~~fD~v~~ 95 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMV-AAARER----GV----DARTGDVR-DW-KPKPDTDVVVS 95 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHhc----CC----cEEEcChh-hC-CCCCCceEEEE
Confidence 3467899999999999999998874 56899999999998 444321 12 23332322 22 23568999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-----CCCC--CCCCceEe--eeeccCCCcchhHHHHHH
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-----GTEG--LPWPAFLM--SWRRRIGKEDETIFFTSC 155 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-----~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~ 155 (175)
+.++++.. ++..++++++++|||||.+++..+...... ..+. ..+..... .+.......+...+.+++
T Consensus 96 ~~~l~~~~---d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l 172 (255)
T PRK14103 96 NAALQWVP---EHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELL 172 (255)
T ss_pred ehhhhhCC---CHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHH
Confidence 99995554 445999999999999999998754321111 0000 01111100 011111223468899999
Q ss_pred HHcCCeeEEec
Q 030565 156 ENAGLEVKHLG 166 (175)
Q Consensus 156 ~~~g~~~~~~~ 166 (175)
+++||++....
T Consensus 173 ~~aGf~v~~~~ 183 (255)
T PRK14103 173 TDAGCKVDAWE 183 (255)
T ss_pred HhCCCeEEEEe
Confidence 99999865443
No 20
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.77 E-value=6.4e-18 Score=123.92 Aligned_cols=154 Identities=14% Similarity=0.082 Sum_probs=97.7
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++|++|||||||+|..+..++.+++..|+|+|+++.-+ ...+...+..+.......+.+.+ +.++. .+.||+|++
T Consensus 112 ~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~-~QF~~i~~~lg~~~~~~~lplgv-E~Lp~-~~~FDtVF~ 188 (315)
T PF08003_consen 112 PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFY-LQFEAIKHFLGQDPPVFELPLGV-EDLPN-LGAFDTVFS 188 (315)
T ss_pred CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHH-HHHHHHHHHhCCCccEEEcCcch-hhccc-cCCcCEEEE
Confidence 4578999999999999999999998677799999998653 22111111111111111111122 33444 679999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
..++||-.++ ...|.++...|+|||.+++-+.-.........-+.. .+....+-|...+...+.++++++||.-.+
T Consensus 189 MGVLYHrr~P---l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~-rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~ 264 (315)
T PF08003_consen 189 MGVLYHRRSP---LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPED-RYAKMRNVWFIPSVAALKNWLERAGFKDVR 264 (315)
T ss_pred eeehhccCCH---HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCC-cccCCCceEEeCCHHHHHHHHHHcCCceEE
Confidence 9999887654 499999999999999999874333222211110100 111122222233568999999999998555
Q ss_pred e
Q 030565 165 L 165 (175)
Q Consensus 165 ~ 165 (175)
+
T Consensus 265 ~ 265 (315)
T PF08003_consen 265 C 265 (315)
T ss_pred E
Confidence 4
No 21
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.77 E-value=1.2e-17 Score=120.66 Aligned_cols=142 Identities=12% Similarity=0.083 Sum_probs=98.9
Q ss_pred CcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030565 10 RRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
++|||||||+|..+..+++.. +.+|+++|+|+.++ +.++.+....+...++..+..+.... +. .++||+|++..++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~-~~a~~~~~~~gl~~~i~~~~~d~~~~-~~-~~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQA-EVGRERIRALGLQGRIRIFYRDSAKD-PF-PDTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHhcCCCcceEEEecccccC-CC-CCCCCEeehHHHH
Confidence 479999999999999998875 57899999999998 77777776666644444444443222 22 3589999999998
Q ss_pred cCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEec
Q 030565 89 LYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 166 (175)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (175)
++.. +...+++++.++|+|||.+++......... .. .......+ ..+...+.+.++++||++.+..
T Consensus 78 ~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~-------~~~~~~~~-~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 78 HHIK---DKMDLFSNISRHLKDGGHLVLADFIANLLS-AI-------EHEETTSY-LVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred HhCC---CHHHHHHHHHHHcCCCCEEEEEEcccccCc-cc-------cccccccc-cCCHHHHHHHHHHCCCeEEEeE
Confidence 5554 455999999999999999998743221100 00 00011111 1235788999999999987653
No 22
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.77 E-value=7e-18 Score=125.34 Aligned_cols=152 Identities=13% Similarity=0.140 Sum_probs=98.7
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
...++.+|||+|||+|..+..+++..+ .+|+++|+++.++ +.++++....+. .++.....+. ..+++.+++||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l-~~A~~~~~~~g~-~~v~~~~~d~-~~l~~~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEML-AKARANARKAGY-TNVEFRLGEI-EALPVADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHH-HHHHHHHHHcCC-CCEEEEEcch-hhCCCCCCceeEE
Confidence 345789999999999999887777544 3699999999998 667766665554 2223322222 2345567799999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-CCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCe
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLE 161 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (175)
+++.++++.. +...++++++++|||||++++......... ..+... ......... ...+..++.++++++||.
T Consensus 151 i~~~v~~~~~---d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~e~~~~l~~aGf~ 224 (272)
T PRK11873 151 ISNCVINLSP---DKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRND-AELYAGCVA--GALQEEEYLAMLAEAGFV 224 (272)
T ss_pred EEcCcccCCC---CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHh-HHHHhcccc--CCCCHHHHHHHHHHCCCC
Confidence 9998885444 344899999999999999998732221111 000000 000100000 112357899999999998
Q ss_pred eEEe
Q 030565 162 VKHL 165 (175)
Q Consensus 162 ~~~~ 165 (175)
...+
T Consensus 225 ~v~i 228 (272)
T PRK11873 225 DITI 228 (272)
T ss_pred ceEE
Confidence 7665
No 23
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.76 E-value=8.1e-18 Score=119.12 Aligned_cols=105 Identities=17% Similarity=0.301 Sum_probs=78.2
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++++|||+|||+|.++..+++. +.+|+|+|+|+.++ +.++++...++.. +.....+. +..++ +++||+|+++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l-~~a~~~~~~~~~~--v~~~~~d~-~~~~~-~~~fD~I~~~ 101 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASI-ASVLDMKARENLP--LRTDAYDI-NAAAL-NEDYDFIFST 101 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHH-HHHHHHHHHhCCC--ceeEeccc-hhccc-cCCCCEEEEe
Confidence 345789999999999999999886 78999999999998 6666666555542 22222222 12222 3589999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.++++ .+.++...+++++.+.|+|||.+++.
T Consensus 102 ~~~~~-~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 102 VVFMF-LQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred ccccc-CCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 88743 33456779999999999999986665
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.76 E-value=7.9e-18 Score=114.73 Aligned_cols=107 Identities=21% Similarity=0.369 Sum_probs=82.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCCCCccEE
Q 030565 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~i 82 (175)
.++.+|||+|||+|.++..+++.. +.+|+|+|+|+.|+ +.++......+.. ++..+..+..+ ++ +. +.||+|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i-~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~~-~~~D~I 77 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMI-EYAKKRAKELGLD-NIEFIQGDIED-LPQELE-EKFDII 77 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHH-HHHHHHHHHTTST-TEEEEESBTTC-GCGCSS-TTEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHH-HHhhccccccccc-ccceEEeehhc-cccccC-CCeeEE
Confidence 357899999999999999998543 67899999999998 7777776666663 45555555554 33 33 799999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
++..++++.. ++..+++++.+.|+++|.+++..+.
T Consensus 78 ~~~~~l~~~~---~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVLHHFP---DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEESTGGGTS---HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEcCchhhcc---CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999984443 5559999999999999999887444
No 25
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.76 E-value=7.3e-18 Score=122.39 Aligned_cols=108 Identities=15% Similarity=0.188 Sum_probs=80.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..++++|||+|||+|..+..+++.. +.+|+++|+++.++ +.++.+....+. .++..+..+.. ..++.+++||+|+
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~-~~v~~~~~d~~-~~~~~~~~fD~V~ 119 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENML-SVGRQKVKDAGL-HNVELVHGNAM-ELPFDDNSFDYVT 119 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHhcCC-CceEEEEechh-cCCCCCCCccEEE
Confidence 3457899999999999999998764 45899999999998 677666655444 23333333322 2345667999999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030565 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
+..++.+. ++...+++++.++|+|||.+++...
T Consensus 120 ~~~~l~~~---~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 120 IGFGLRNV---PDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred EecccccC---CCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 99887433 3455999999999999999987643
No 26
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.75 E-value=4.9e-17 Score=113.68 Aligned_cols=135 Identities=20% Similarity=0.213 Sum_probs=97.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++++|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++...++. .+..+..++ .....++||+|+++
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~---~~~~~~~fD~Vi~n 89 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAV-KELRENAKLNNV--GLDVVMTDL---FKGVRGKFDVILFN 89 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEccc---ccccCCcccEEEEC
Confidence 446788999999999999999887 45899999999998 777878776655 222333232 22334689999999
Q ss_pred CcccCcccc------------------hHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcc
Q 030565 86 DILLYVKQY------------------SNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKED 147 (175)
Q Consensus 86 ~~l~~~~~~------------------~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (175)
..+++.... ..+..+++++.++|+|||++++..... ..
T Consensus 90 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~------------------------~~ 145 (179)
T TIGR00537 90 PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL------------------------NG 145 (179)
T ss_pred CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc------------------------CC
Confidence 776433211 124578999999999999888752211 11
Q ss_pred hhHHHHHHHHcCCeeEEecceEEE
Q 030565 148 ETIFFTSCENAGLEVKHLGSRVYC 171 (175)
Q Consensus 148 ~~~~~~~~~~~g~~~~~~~~~~~~ 171 (175)
...+.+.+++.||+++.+.+...+
T Consensus 146 ~~~~~~~l~~~gf~~~~~~~~~~~ 169 (179)
T TIGR00537 146 EPDTFDKLDERGFRYEIVAERGLF 169 (179)
T ss_pred hHHHHHHHHhCCCeEEEEEEeecC
Confidence 377889999999999888766554
No 27
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.75 E-value=2.1e-18 Score=123.31 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=98.8
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCC-Cc-ceeeccCCCCCCCCCCCccEEEeCC
Q 030565 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-AL-PHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
|++|||+|||.|.++..||+. |..|+|+|.++.|+ +.++......-... .+ ..+.+...+. +...+.||.|+++.
T Consensus 90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V-~vA~~h~~~dP~~~~~~~y~l~~~~~~~-E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMV-EVANEHKKMDPVLEGAIAYRLEYEDTDV-EGLTGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhh-CCeeEeecccHHHH-HHHHHhhhcCchhccccceeeehhhcch-hhcccccceeeeHH
Confidence 588999999999999999887 89999999999998 66555533322211 00 1122222221 22234599999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCC--CCCCCCC-CCCCceEee-ee-ccCCCcchhHHHHHHHHcCCe
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNE--QGEGTEG-LPWPAFLMS-WR-RRIGKEDETIFFTSCENAGLE 161 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~--~~~~~~~-~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~g~~ 161 (175)
++ ++..+++.+++.+.+.|||+|++++++.... .....++ .+...-+.. .. .|-.-.++.+..+.++.++++
T Consensus 167 vl---eHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~ 243 (282)
T KOG1270|consen 167 VL---EHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQ 243 (282)
T ss_pred HH---HHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcc
Confidence 99 5555677999999999999999999843321 1111111 000000000 00 111112357888889999999
Q ss_pred eEEecceEE
Q 030565 162 VKHLGSRVY 170 (175)
Q Consensus 162 ~~~~~~~~~ 170 (175)
+..+-+.+|
T Consensus 244 v~~v~G~~y 252 (282)
T KOG1270|consen 244 VNDVVGEVY 252 (282)
T ss_pred hhhhhcccc
Confidence 888866554
No 28
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.74 E-value=2.3e-16 Score=110.54 Aligned_cols=122 Identities=18% Similarity=0.236 Sum_probs=88.6
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
++.+|||+|||+|..++.+++.. +.+|+++|+|+.|+ +.++++.+.++.. .+..+..+..+ .+. .++||+|+++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l-~~A~~~~~~~~l~-~i~~~~~d~~~-~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKI-AFLREVAAELGLK-NVTVVHGRAEE-FGQ-EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHH-HHHHHHHHHcCCC-CEEEEeccHhh-CCC-CCCccEEEEcc
Confidence 47899999999999999988743 67899999999998 7788888777762 23333333322 333 56899999975
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
. . ++..++++++++|+|||++++..... ....+....+..|+.+..+
T Consensus 121 ~----~---~~~~~l~~~~~~LkpGG~lv~~~~~~-------------------------~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 121 V----A---SLSDLVELCLPLLKPGGRFLALKGRD-------------------------PEEEIAELPKALGGKVEEV 167 (187)
T ss_pred c----c---CHHHHHHHHHHhcCCCeEEEEEeCCC-------------------------hHHHHHHHHHhcCceEeee
Confidence 2 2 34489999999999999888741110 1356777777778875554
No 29
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.73 E-value=4.3e-17 Score=123.34 Aligned_cols=140 Identities=12% Similarity=0.091 Sum_probs=94.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
++.+|||||||+|.++..+++.. +.+|+++|+|+.|+ +.++++.... ++..+..+. ..+++.+++||+|+++.
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL-~~A~~k~~~~----~i~~i~gD~-e~lp~~~~sFDvVIs~~ 186 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQL-AKAKQKEPLK----ECKIIEGDA-EDLPFPTDYADRYVSAG 186 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHhhhcc----CCeEEeccH-HhCCCCCCceeEEEEcC
Confidence 46799999999999999888764 56899999999998 5555443322 223333222 23456678999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-CCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
++.++.+ ...++++++++|+|||++++......... .... . ..+......+++.++++++||+..++
T Consensus 187 ~L~~~~d---~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~---~------~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 187 SIEYWPD---PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFF---A------DVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred hhhhCCC---HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHh---h------hhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 9866554 34899999999999999887532211100 0000 0 00111123588999999999986655
No 30
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.73 E-value=4.5e-17 Score=113.10 Aligned_cols=109 Identities=27% Similarity=0.431 Sum_probs=73.6
Q ss_pred CccccCCCcEEEeCCCccHHHHHHHHh-CCCcEEEEeCChHHHHHHHHHHHhhCC--CCCCcceeeccCCCCC--C-CCC
Q 030565 3 HREWIERRRCIELGSGTGALAIFLRKA-MNLDITTSDYNDQEIEDNIAYNSTTNG--ITPALPHIKHSWGDAF--P-IPN 76 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~~D~s~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~-~~~ 76 (175)
++....+++|||||||+|..++.+++. .+.+|+++|.++ .+ +.++.|++.|+ ....+....++|++.. + ...
T Consensus 40 ~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l-~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~ 117 (173)
T PF10294_consen 40 NPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VL-ELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEP 117 (173)
T ss_dssp -GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HH-HHHHHHHHTT--------EEEE--TTS-HHHHHHS-
T ss_pred chhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hh-HHHHHHHHhccccccccccCcEEEecCccccccccc
Confidence 356778999999999999999999887 477899999999 65 88899999887 4567778889998744 1 234
Q ss_pred CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030565 77 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
++||+|++++++|.....+ .+++-+.+.++|+|.+++
T Consensus 118 ~~~D~IlasDv~Y~~~~~~---~L~~tl~~ll~~~~~vl~ 154 (173)
T PF10294_consen 118 HSFDVILASDVLYDEELFE---PLVRTLKRLLKPNGKVLL 154 (173)
T ss_dssp SSBSEEEEES--S-GGGHH---HHHHHHHHHBTT-TTEEE
T ss_pred ccCCEEEEecccchHHHHH---HHHHHHHHHhCCCCEEEE
Confidence 6899999999997765544 777778888899986444
No 31
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.73 E-value=1.1e-16 Score=110.58 Aligned_cols=141 Identities=16% Similarity=0.283 Sum_probs=97.4
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEeC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~ 85 (175)
.+|.+|||||||.|.+...+.+..+...+|+|++++.+.++.+ +++ +.++.+..+.++ +++++||+|+++
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~-----rGv----~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA-----RGV----SVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH-----cCC----CEEECCHHHhHhhCCCCCccEEehH
Confidence 4689999999999999999988778999999999987644433 234 566777766664 889999999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCC--------CCCCCC----CCCceEeeeeccCCCcchhHHHH
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQG--------EGTEGL----PWPAFLMSWRRRIGKEDETIFFT 153 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~--------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 153 (175)
+++.. ...+..+++|+.|+-+ ..+++.++.... .+.|+. +..++...-.+.. +.++|.+
T Consensus 83 qtLQ~---~~~P~~vL~EmlRVgr---~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~---Ti~DFe~ 153 (193)
T PF07021_consen 83 QTLQA---VRRPDEVLEEMLRVGR---RAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLC---TIKDFED 153 (193)
T ss_pred hHHHh---HhHHHHHHHHHHHhcC---eEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccc---cHHHHHH
Confidence 99944 4455699999998854 335553333211 022221 1112222222222 2599999
Q ss_pred HHHHcCCeeEEe
Q 030565 154 SCENAGLEVKHL 165 (175)
Q Consensus 154 ~~~~~g~~~~~~ 165 (175)
++++.|+++++-
T Consensus 154 lc~~~~i~I~~~ 165 (193)
T PF07021_consen 154 LCRELGIRIEER 165 (193)
T ss_pred HHHHCCCEEEEE
Confidence 999999987764
No 32
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.72 E-value=8.4e-17 Score=120.33 Aligned_cols=104 Identities=16% Similarity=0.348 Sum_probs=79.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++++|||+|||+|.++..+++. +.+|+|+|+|+.++ +.++++....+. .+.....+..+ ... +++||+|++..
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai-~~~~~~~~~~~l--~v~~~~~D~~~-~~~-~~~fD~I~~~~ 192 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSL-ENLQEIAEKENL--NIRTGLYDINS-ASI-QEEYDFILSTV 192 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEechhc-ccc-cCCccEEEEcc
Confidence 35679999999999999999886 78999999999998 677766666555 23333222221 222 67899999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++++. +.+++..+++++.++|+|||.+++.
T Consensus 193 vl~~l-~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 193 VLMFL-NRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred hhhhC-CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 88544 3567789999999999999986664
No 33
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.72 E-value=6.3e-17 Score=112.91 Aligned_cols=107 Identities=15% Similarity=0.342 Sum_probs=78.4
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...+++++||||||.|+.+++||+. |..|+++|+|+..+ +.+++.....++ .+.....+..+ ..+ ++.||+|++
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al-~~l~~~a~~~~l--~i~~~~~Dl~~-~~~-~~~yD~I~s 100 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVAL-EKLQRLAEEEGL--DIRTRVADLND-FDF-PEEYDFIVS 100 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHH-HHHHHHHHHTT---TEEEEE-BGCC-BS--TTTEEEEEE
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHH-HHHHHHHhhcCc--eeEEEEecchh-ccc-cCCcCEEEE
Confidence 3456789999999999999999998 99999999999998 666666666666 23444444322 222 368999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
..++.+.. .+.+..+++.+.+.++|||.+++.+
T Consensus 101 t~v~~fL~-~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 101 TVVFMFLQ-RELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp ESSGGGS--GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEeccCC-HHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 87774444 6778899999999999999888753
No 34
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.71 E-value=1.1e-16 Score=119.05 Aligned_cols=131 Identities=19% Similarity=0.246 Sum_probs=92.8
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++++|||+|||||.+++.+++.++.+|+|+|++|.++ +.++.|...|+...++... ........+||+|+++
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av-~~a~~N~~~N~~~~~~~v~-----~~~~~~~~~~dlvvAN 232 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAV-EAARENAELNGVEDRIEVS-----LSEDLVEGKFDLVVAN 232 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHH-HHHHHHHHHTT-TTCEEES-----CTSCTCCS-EEEEEEE
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHH-HHHHHHHHHcCCCeeEEEE-----EecccccccCCEEEEC
Confidence 346889999999999999999998777899999999998 8999999999995533221 1222334899999997
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
=. .+.+..++..+.+.++|||.++++ .++. .....+.+.+++ ||++.+.
T Consensus 233 I~------~~vL~~l~~~~~~~l~~~G~lIlS----------------GIl~--------~~~~~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 233 IL------ADVLLELAPDIASLLKPGGYLILS----------------GILE--------EQEDEVIEAYKQ-GFELVEE 281 (295)
T ss_dssp S-------HHHHHHHHHHCHHHEEEEEEEEEE----------------EEEG--------GGHHHHHHHHHT-TEEEEEE
T ss_pred CC------HHHHHHHHHHHHHhhCCCCEEEEc----------------cccH--------HHHHHHHHHHHC-CCEEEEE
Confidence 33 234568888999999999988884 2222 123667777776 9986544
Q ss_pred ---cceEEEEe
Q 030565 166 ---GSRVYCIK 173 (175)
Q Consensus 166 ---~~~~~~i~ 173 (175)
+++.-++.
T Consensus 282 ~~~~~W~~l~~ 292 (295)
T PF06325_consen 282 REEGEWVALVF 292 (295)
T ss_dssp EEETTEEEEEE
T ss_pred EEECCEEEEEE
Confidence 44444433
No 35
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.71 E-value=1.1e-16 Score=117.33 Aligned_cols=107 Identities=17% Similarity=0.167 Sum_probs=80.3
Q ss_pred cCCCcEEEeCCCccHHHHHHHHh---CCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030565 7 IERRRCIELGSGTGALAIFLRKA---MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~---~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
.++.+|||+|||+|..+..+++. .+.+|+++|+|+.|+ +.++++....+...++..+ .++....+.+.+|+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml-~~A~~~~~~~~~~~~v~~~---~~d~~~~~~~~~D~vv 130 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMI-ERCRRHIDAYKAPTPVDVI---EGDIRDIAIENASMVV 130 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEE---eCChhhCCCCCCCEEe
Confidence 36789999999999999888763 367899999999998 7777776655443333333 3333223334699999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030565 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
++.++++.. .++...++++++++|||||.+++..
T Consensus 131 ~~~~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 131 LNFTLQFLE-PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhhHHHhCC-HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 998885544 4567799999999999999999973
No 36
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.70 E-value=3e-16 Score=121.31 Aligned_cols=146 Identities=12% Similarity=0.144 Sum_probs=94.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||||||+|.++..+++..+.+|+++|+|++++ +.++++.. +. . +.+...+.... +++||.|++.
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l-~~A~~~~~--~l--~---v~~~~~D~~~l-~~~fD~Ivs~ 235 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQ-KLAQERCA--GL--P---VEIRLQDYRDL-NGQFDRIVSV 235 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHhc--cC--e---EEEEECchhhc-CCCCCEEEEe
Confidence 457889999999999999999987788999999999998 66665543 22 1 22222232222 4689999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeee-ccCCCcchhHHHHHHHHcCCeeEE
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWR-RRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
.++.+.. ..+...+++++.++|||||.+++.......... ....|...+. +.....+...+... .+.||++.+
T Consensus 236 ~~~ehvg-~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~----~~~~~i~~yifp~g~lps~~~i~~~-~~~~~~v~d 309 (383)
T PRK11705 236 GMFEHVG-PKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDT----NVDPWINKYIFPNGCLPSVRQIAQA-SEGLFVMED 309 (383)
T ss_pred CchhhCC-hHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCC----CCCCCceeeecCCCcCCCHHHHHHH-HHCCcEEEE
Confidence 9885543 455679999999999999999987443322110 0112222221 11111124555554 446898877
Q ss_pred ec
Q 030565 165 LG 166 (175)
Q Consensus 165 ~~ 166 (175)
+.
T Consensus 310 ~~ 311 (383)
T PRK11705 310 WH 311 (383)
T ss_pred Ee
Confidence 64
No 37
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.70 E-value=2.8e-18 Score=108.69 Aligned_cols=97 Identities=20% Similarity=0.300 Sum_probs=59.1
Q ss_pred EEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCC-CCCccEEEeCCcccC
Q 030565 13 IELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP-NPDWDLILASDILLY 90 (175)
Q Consensus 13 LDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~i~~~~~l~~ 90 (175)
||+|||+|.++..++... ..+|+++|+|+.|+ +.++++...... .....+.+...+..... .++||+|++..+++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l-~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSML-ERARERLAELGN-DNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTT-STTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhcCC-cceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 799999999999887764 66799999999998 444444444332 12234444444443332 259999999999966
Q ss_pred cccchHHHHHHHHHHhhcCCCCce
Q 030565 91 VKQYSNLIKSLSVLLKSYKPKDSQ 114 (175)
Q Consensus 91 ~~~~~~~~~~l~~l~~~l~pgG~~ 114 (175)
. +++..+++++.+.|+|||.+
T Consensus 79 l---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 L---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----S-HHHHHHHHTTT-TSS-EE
T ss_pred h---hhHHHHHHHHHHHcCCCCCC
Confidence 6 56669999999999999964
No 38
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.70 E-value=1.6e-16 Score=114.51 Aligned_cols=148 Identities=16% Similarity=0.151 Sum_probs=94.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++++|||+|||+|.++..+++. +.+|+|+|+|+.|+ +.++++....+.... +.+..++..... ++||+|++.+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i-~~a~~~~~~~~~~~~---i~~~~~d~~~~~-~~fD~ii~~~ 127 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMV-QMARNRAQGRDVAGN---VEFEVNDLLSLC-GEFDIVVCMD 127 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHH-HHHHHHHHhcCCCCc---eEEEECChhhCC-CCcCEEEEhh
Confidence 45789999999999999999876 77999999999998 666666554443222 333333322222 7899999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCC----CCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCee
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQ----GEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEV 162 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (175)
++++.. .+.+..+++++.+.+++++.+.+....... ........... .......+..++.++++++||++
T Consensus 128 ~l~~~~-~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~Gf~v 201 (219)
T TIGR02021 128 VLIHYP-ASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSR-----ATSAYLHPMTDLERALGELGWKI 201 (219)
T ss_pred HHHhCC-HHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCccc-----ccceEEecHHHHHHHHHHcCcee
Confidence 985554 456778999999998876544443111000 00000000000 00001113589999999999998
Q ss_pred EEec
Q 030565 163 KHLG 166 (175)
Q Consensus 163 ~~~~ 166 (175)
....
T Consensus 202 ~~~~ 205 (219)
T TIGR02021 202 VREG 205 (219)
T ss_pred eeee
Confidence 8764
No 39
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.70 E-value=4.6e-16 Score=108.73 Aligned_cols=100 Identities=21% Similarity=0.280 Sum_probs=73.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++++|||+|||+|.++..++... +.+|+++|+|+.|+ +.++++.+..+. .++..+..+..+ . ...++||+|++.
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~-~~a~~~~~~~~~-~~i~~i~~d~~~-~-~~~~~fD~I~s~ 116 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKV-AFLREVKAELGL-NNVEIVNGRAED-F-QHEEQFDVITSR 116 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHH-HHHHHHHHHhCC-CCeEEEecchhh-c-cccCCccEEEeh
Confidence 458899999999999999987754 46799999999997 677777766655 234444434332 2 235689999986
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. + . ++..+++.+.+.|+|||.+++.
T Consensus 117 ~-~---~---~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 117 A-L---A---SLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred h-h---h---CHHHHHHHHHHhcCCCCEEEEE
Confidence 5 3 2 2337888899999999988773
No 40
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=8e-16 Score=113.54 Aligned_cols=125 Identities=21% Similarity=0.285 Sum_probs=93.8
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCC-CCccEEEeC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN-PDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~fD~i~~~ 85 (175)
.+|++|||+|||+|.+++.+++.++..|+|+|++|..+ +.++.|.+.|+... .+............ ++||+|+++
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV-~aa~eNa~~N~v~~---~~~~~~~~~~~~~~~~~~DvIVAN 236 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAV-EAARENARLNGVEL---LVQAKGFLLLEVPENGPFDVIVAN 236 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHH-HHHHHHHHHcCCch---hhhcccccchhhcccCcccEEEeh
Confidence 47899999999999999999998677799999999998 88888999988832 12222223333333 599999997
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
= + . ..+..+..++.+.++|||+++++ ..+. . -...+.+.+.++||++...
T Consensus 237 I-L---A--~vl~~La~~~~~~lkpgg~lIlS----------------GIl~-------~-q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 237 I-L---A--EVLVELAPDIKRLLKPGGRLILS----------------GILE-------D-QAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred h-h---H--HHHHHHHHHHHHHcCCCceEEEE----------------eehH-------h-HHHHHHHHHHhCCCeEeEE
Confidence 3 2 2 24558899999999999988884 1111 1 1367778888999987666
No 41
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.69 E-value=2.6e-16 Score=109.16 Aligned_cols=106 Identities=20% Similarity=0.286 Sum_probs=78.7
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
++++|||+|||+|.+++.+++.... +|+++|+|+.++ +.+++|...++... +..+..++.+. ..+++||+|+++.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~-~~a~~n~~~n~~~~-v~~~~~d~~~~--~~~~~fD~Iv~NP 106 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL-ELAKRNAERNGLEN-VEVVQSDLFEA--LPDGKFDLIVSNP 106 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH-HHHHHHHHHTTCTT-EEEEESSTTTT--CCTTCEEEEEE--
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHHHHhcCccc-ccccccccccc--ccccceeEEEEcc
Confidence 6789999999999999999887533 599999999998 88999999988833 33333333332 2357999999998
Q ss_pred cccCccc--chHHHHHHHHHHhhcCCCCceeec
Q 030565 87 ILLYVKQ--YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~--~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.++...+ ......++++..+.|+|||.+++.
T Consensus 107 P~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 107 PFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp -SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 7622221 124678999999999999988774
No 42
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.69 E-value=9.4e-16 Score=112.55 Aligned_cols=127 Identities=20% Similarity=0.297 Sum_probs=89.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++++|||+|||+|.+++.+++.+..+|+++|+|+.++ +.++++...++... .+.+..+ +.+||+|+++-
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l-~~A~~n~~~~~~~~---~~~~~~~------~~~fD~Vvani 187 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAV-EAARENAELNGVEL---NVYLPQG------DLKADVIVANI 187 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHcCCCc---eEEEccC------CCCcCEEEEcC
Confidence 46899999999999999988776444599999999998 77788887766621 1111111 12799999864
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe-
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL- 165 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~- 165 (175)
.. +.+..+++++.++|+|||.++++... ......+.+.+++.||++...
T Consensus 188 ~~------~~~~~l~~~~~~~LkpgG~lilsgi~------------------------~~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 188 LA------NPLLELAPDLARLLKPGGRLILSGIL------------------------EEQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred cH------HHHHHHHHHHHHhcCCCcEEEEEECc------------------------HhhHHHHHHHHHHCCCEEEEEE
Confidence 32 23458899999999999988884111 112367888899999986554
Q ss_pred --cceEEEEe
Q 030565 166 --GSRVYCIK 173 (175)
Q Consensus 166 --~~~~~~i~ 173 (175)
+++..++.
T Consensus 238 ~~~~W~~~~~ 247 (250)
T PRK00517 238 ERGEWVALVG 247 (250)
T ss_pred EeCCEEEEEE
Confidence 44444443
No 43
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.69 E-value=4.1e-16 Score=115.01 Aligned_cols=147 Identities=17% Similarity=0.229 Sum_probs=92.7
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||||||+|.++..+++.. +.+|+++|+|+.|+ +.++++.. .+..+..+.. .+ ...++||+|++
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i-~~a~~~~~------~~~~~~~d~~-~~-~~~~~fD~v~~ 99 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAML-AEARSRLP------DCQFVEADIA-SW-QPPQALDLIFA 99 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHhCC------CCeEEECchh-cc-CCCCCccEEEE
Confidence 3467899999999999999998865 57899999999998 55554421 1222222221 11 23458999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCC-----CCC--CCCCceEeeee-ccCCCcchhHHHHHHH
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEG-----TEG--LPWPAFLMSWR-RRIGKEDETIFFTSCE 156 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 156 (175)
+.++++.. +...+++++.++|+|||.+++..+....... ++. .++...+.... ......+...+.+.+.
T Consensus 100 ~~~l~~~~---d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (258)
T PRK01683 100 NASLQWLP---DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALA 176 (258)
T ss_pred ccChhhCC---CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHH
Confidence 99984443 4559999999999999999887543321110 000 11111111111 0111123567889999
Q ss_pred HcCCeeEE
Q 030565 157 NAGLEVKH 164 (175)
Q Consensus 157 ~~g~~~~~ 164 (175)
++|+.+..
T Consensus 177 ~~g~~v~~ 184 (258)
T PRK01683 177 PAACRVDI 184 (258)
T ss_pred hCCCceee
Confidence 99987543
No 44
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.69 E-value=1.6e-16 Score=116.70 Aligned_cols=101 Identities=14% Similarity=0.235 Sum_probs=76.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
++.+|||+|||+|.++..+++. +.+|+++|+|+.|+ +.++.+... ...+..+. ..+++.+++||+|+++.+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l-~~a~~~~~~------~~~~~~d~-~~~~~~~~~fD~V~s~~~ 112 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPML-AQARQKDAA------DHYLAGDI-ESLPLATATFDLAWSNLA 112 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHH-HHHHhhCCC------CCEEEcCc-ccCcCCCCcEEEEEECch
Confidence 4678999999999999998775 78999999999998 555443221 12233333 335667789999999998
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030565 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
+++.. ++..++.++.++|+|||.++++...
T Consensus 113 l~~~~---d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 113 VQWCG---NLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred hhhcC---CHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 84433 4559999999999999999987543
No 45
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.69 E-value=4.1e-16 Score=113.37 Aligned_cols=158 Identities=14% Similarity=0.113 Sum_probs=99.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||||||+|.++..+++. +.+|+++|+++.++ +.++.+....+. .+.....+..+......++||+|+++
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~-~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~ 121 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENI-EVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCM 121 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHH-HHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEh
Confidence 346789999999999999999876 78899999999997 666665554433 22333333322222345789999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCC--CC-CC--CCceEeeeeccCCCcchhHHHHHHHHcCC
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGT--EG-LP--WPAFLMSWRRRIGKEDETIFFTSCENAGL 160 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~--~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (175)
.++.+.. +...+++.+.+.|+|||++++........... +. .. ..........+....+..++.++++++||
T Consensus 122 ~~l~~~~---~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 198 (233)
T PRK05134 122 EMLEHVP---DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGL 198 (233)
T ss_pred hHhhccC---CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCC
Confidence 8885444 45589999999999999998875432110000 00 00 00000000001111235789999999999
Q ss_pred eeEEecceEE
Q 030565 161 EVKHLGSRVY 170 (175)
Q Consensus 161 ~~~~~~~~~~ 170 (175)
++.+.....|
T Consensus 199 ~~v~~~~~~~ 208 (233)
T PRK05134 199 EVQDITGLHY 208 (233)
T ss_pred eEeeeeeEEe
Confidence 9887754433
No 46
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.69 E-value=8.2e-16 Score=108.23 Aligned_cols=121 Identities=21% Similarity=0.181 Sum_probs=86.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||+|||+|.++..+++.. +.+|+++|+|+.++ +.++++....+. .. +.+..++......++||+|++
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~-~~a~~n~~~~~~-~~---i~~~~~d~~~~~~~~~D~v~~ 103 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDAL-RLIKENRQRFGC-GN---IDIIPGEAPIELPGKADAIFI 103 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHhCC-CC---eEEEecCchhhcCcCCCEEEE
Confidence 3467899999999999999998865 46899999999998 777777776655 22 333333322222458999998
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCe
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLE 161 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (175)
.... . .+..+++++.+.|+|||++++.... ..+..++.+.+++.||.
T Consensus 104 ~~~~---~---~~~~~l~~~~~~Lk~gG~lv~~~~~------------------------~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 104 GGSG---G---NLTAIIDWSLAHLHPGGRLVLTFIL------------------------LENLHSALAHLEKCGVS 150 (187)
T ss_pred CCCc---c---CHHHHHHHHHHhcCCCeEEEEEEec------------------------HhhHHHHHHHHHHCCCC
Confidence 7654 2 2347889999999999988773110 11246777888888975
No 47
>PRK08317 hypothetical protein; Provisional
Probab=99.68 E-value=7.4e-16 Score=112.06 Aligned_cols=160 Identities=14% Similarity=0.161 Sum_probs=100.0
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
...++.+|||+|||+|.++..+++.. ..+|+++|+++.++ +.++++... ....+..+..+. ...++.+++||+|
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~-~~a~~~~~~--~~~~~~~~~~d~-~~~~~~~~~~D~v 91 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAML-ALAKERAAG--LGPNVEFVRGDA-DGLPFPDGSFDAV 91 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHH-HHHHHHhhC--CCCceEEEeccc-ccCCCCCCCceEE
Confidence 34567899999999999999998875 46899999999997 555554222 111222322222 2234556799999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCC--CCceEeeee-ccCCCcchhHHHHHHHHcC
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP--WPAFLMSWR-RRIGKEDETIFFTSCENAG 159 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~g 159 (175)
++..++.+.. +...+++++.++|+|||.+++..+............ ...+...+. ..........+.+.++++|
T Consensus 92 ~~~~~~~~~~---~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 168 (241)
T PRK08317 92 RSDRVLQHLE---DPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAG 168 (241)
T ss_pred EEechhhccC---CHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcC
Confidence 9999985554 455899999999999999988754321111000000 000000000 0111122467889999999
Q ss_pred CeeEEecceEEE
Q 030565 160 LEVKHLGSRVYC 171 (175)
Q Consensus 160 ~~~~~~~~~~~~ 171 (175)
|...++......
T Consensus 169 f~~~~~~~~~~~ 180 (241)
T PRK08317 169 LTDIEVEPYTLI 180 (241)
T ss_pred CCceeEEEEEEe
Confidence 987776555443
No 48
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.68 E-value=9.9e-17 Score=101.93 Aligned_cols=96 Identities=18% Similarity=0.312 Sum_probs=70.7
Q ss_pred EEEeCCCccHHHHHHHHhC--C--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030565 12 CIELGSGTGALAIFLRKAM--N--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 12 vLDlGcG~G~~~~~l~~~~--~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
|||+|||+|..+..+++.. + .+++++|+|+.|+ +.+++.....+. .+..+..+..+ ++..+++||+|+++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l-~~~~~~~~~~~~--~~~~~~~D~~~-l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEML-ELAKKRFSEDGP--KVRFVQADARD-LPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHH-HHHHHHSHHTTT--TSEEEESCTTC-HHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHH-HHHHHhchhcCC--ceEEEECCHhH-CcccCCCeeEEEEcCC
Confidence 7999999999999998875 3 7899999999999 666666655444 34444444432 4456779999999555
Q ss_pred -ccCcccchHHHHHHHHHHhhcCCCC
Q 030565 88 -LLYVKQYSNLIKSLSVLLKSYKPKD 112 (175)
Q Consensus 88 -l~~~~~~~~~~~~l~~l~~~l~pgG 112 (175)
+.| .+.+++..+++++.++++|||
T Consensus 77 ~~~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCC-CCHHHHHHHHHHHHHHhCCCC
Confidence 644 667788999999999999997
No 49
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.68 E-value=3.5e-16 Score=111.35 Aligned_cols=130 Identities=12% Similarity=0.104 Sum_probs=88.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCCCCccEEEe
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~i~~ 84 (175)
++.+|||+|||+|..+..+++.. +.+|+++|+|+.++ +.++++...++. .++..+..+..+.++ +.+++||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i-~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGV-GKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHH-HHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEE
Confidence 46789999999999999998865 56799999999998 777777766554 233333333312222 55678999998
Q ss_pred CCcccCcccc-----hHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcC
Q 030565 85 SDILLYVKQY-----SNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAG 159 (175)
Q Consensus 85 ~~~l~~~~~~-----~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (175)
.....+.... .....+++++.++|+|||.+++..... .....+.+.+++.|
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~------------------------~~~~~~~~~~~~~g 173 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE------------------------GYAEYMLEVLSAEG 173 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH------------------------HHHHHHHHHHHhCc
Confidence 6543111100 013589999999999999888852211 01256677778888
Q ss_pred CeeE
Q 030565 160 LEVK 163 (175)
Q Consensus 160 ~~~~ 163 (175)
+.+.
T Consensus 174 ~~~~ 177 (202)
T PRK00121 174 GFLV 177 (202)
T ss_pred cccc
Confidence 7665
No 50
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.67 E-value=8.7e-16 Score=111.77 Aligned_cols=106 Identities=21% Similarity=0.281 Sum_probs=79.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
++.+|||+|||+|..+..+++... .+|+++|+++.++ +.++++....+....+..+..+..+ .+..+++||+|+++
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~I~~~ 128 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGML-AVGREKLRDLGLSGNVEFVQGDAEA-LPFPDNSFDAVTIA 128 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHH-HHHHHhhcccccccCeEEEeccccc-CCCCCCCccEEEEe
Confidence 568999999999999999988763 7899999999998 6776665543332333343333322 33446789999998
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
.++.+.. +...+++++.+.|+|||.+++..
T Consensus 129 ~~l~~~~---~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 129 FGLRNVP---DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred cccccCC---CHHHHHHHHHHhccCCcEEEEEE
Confidence 8884444 45599999999999999888763
No 51
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.67 E-value=6.9e-16 Score=112.61 Aligned_cols=106 Identities=13% Similarity=0.171 Sum_probs=78.8
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
++.+|||+|||+|..+..+++.. +.+|+++|+|+.|+ +.++++....+...++..+. ++........+|+|++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml-~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~d~v~~ 128 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMV-ERCRQHIAAYHSEIPVEILC---NDIRHVEIKNASMVIL 128 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEE---CChhhCCCCCCCEEee
Confidence 57889999999999999998753 57899999999998 67766655433322233333 3322223346899999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+.++.+.. .++...++++++++|+|||.+++..
T Consensus 129 ~~~l~~~~-~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 129 NFTLQFLP-PEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred ecchhhCC-HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 99985543 4567799999999999999999874
No 52
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.67 E-value=1.2e-15 Score=100.22 Aligned_cols=105 Identities=15% Similarity=0.192 Sum_probs=75.6
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||+|||+|.++..+++.. +.+|+++|+|+.++ +.++++....+.. .+..+..+.....+...++||+|++
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~v~~ 94 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEAL-RLIERNARRFGVS-NIVIVEGDAPEALEDSLPEPDRVFI 94 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHH-HHHHHHHHHhCCC-ceEEEeccccccChhhcCCCCEEEE
Confidence 3456799999999999999998875 46899999999998 7777776665441 2222222221212233458999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
.... ....++++++.+.|+|||.+++..
T Consensus 95 ~~~~------~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 95 GGSG------GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCcc------hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 7543 233489999999999999988853
No 53
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.67 E-value=2e-15 Score=109.06 Aligned_cols=156 Identities=17% Similarity=0.157 Sum_probs=99.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.++..+++. +.+++++|+++.++ +.++++....+.. .+.....+..+......++||+|++..
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~-~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~ 120 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENI-EVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCME 120 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHH-HHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehh
Confidence 45789999999999999988775 67899999999997 6666666554331 122222222212112246899999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC--CC-----CC-CCCCceEeeeeccCCCcchhHHHHHHHHc
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GT-----EG-LPWPAFLMSWRRRIGKEDETIFFTSCENA 158 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~--~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (175)
++.+.. ++..+++++.+.|+|||.+++......... .. +. ...+.....+.+. .+..++.++++++
T Consensus 121 ~l~~~~---~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~ 194 (224)
T TIGR01983 121 VLEHVP---DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKF---IKPSELTSWLESA 194 (224)
T ss_pred HHHhCC---CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhc---CCHHHHHHHHHHc
Confidence 884444 455999999999999999887643221100 00 00 0000000001111 1347899999999
Q ss_pred CCeeEEecceEEE
Q 030565 159 GLEVKHLGSRVYC 171 (175)
Q Consensus 159 g~~~~~~~~~~~~ 171 (175)
||++.++....|.
T Consensus 195 G~~i~~~~~~~~~ 207 (224)
T TIGR01983 195 GLRVKDVKGLVYN 207 (224)
T ss_pred CCeeeeeeeEEee
Confidence 9999988776654
No 54
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.67 E-value=1.5e-15 Score=113.56 Aligned_cols=101 Identities=16% Similarity=0.147 Sum_probs=77.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++++|||+|||+|.+++.+++....+|+++|+++.++ +.++++...++....+... ..+..+..+++||+|+++.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al-~~a~~n~~~n~~~~~~~~~---~~~~~~~~~~~fDlVvan~ 233 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAV-ESARKNAELNQVSDRLQVK---LIYLEQPIEGKADVIVANI 233 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHcCCCcceEEE---ecccccccCCCceEEEEec
Confidence 46789999999999999998876556899999999998 7888888887764322222 2222334456899999975
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.. ..+..++.++.++|+|||.++++
T Consensus 234 ~~------~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 234 LA------EVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred CH------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 42 23458999999999999988874
No 55
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.66 E-value=5.6e-16 Score=110.28 Aligned_cols=101 Identities=18% Similarity=0.199 Sum_probs=74.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++.+|||+|||+|..+..+++.. +.+++|+|+|+.|+ +.++.+.. .+.....+..+ ++.+++||+|+++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l-~~A~~~~~------~~~~~~~d~~~--~~~~~sfD~V~~~ 112 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAV-EKAKAYLP------NINIIQGSLFD--PFKDNFFDLVLTK 112 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHH-HHHHhhCC------CCcEEEeeccC--CCCCCCEEEEEEC
Confidence 467789999999999999998763 67899999999998 55554321 12223333222 5667899999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
.+++|.. .+.+.+++++++++++ +.+++...
T Consensus 113 ~vL~hl~-p~~~~~~l~el~r~~~--~~v~i~e~ 143 (204)
T TIGR03587 113 GVLIHIN-PDNLPTAYRELYRCSN--RYILIAEY 143 (204)
T ss_pred ChhhhCC-HHHHHHHHHHHHhhcC--cEEEEEEe
Confidence 9997664 5678899999999873 55666543
No 56
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.66 E-value=1.4e-15 Score=109.51 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=103.0
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-CCCCccEEEeC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLILAS 85 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~i~~~ 85 (175)
..++|||||||+|.+++.+|++. ..+++++|+++.+. +.++++.+.+.+..++..++.+..+..+. ...+||+|+|+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a-~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAA-EMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHH-HHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 47899999999999999999985 48899999999997 88999999999988888887776554432 23379999999
Q ss_pred CcccCcccc---------------hHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhH
Q 030565 86 DILLYVKQY---------------SNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETI 150 (175)
Q Consensus 86 ~~l~~~~~~---------------~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (175)
..+|-.... -++..+++...++|||||.++++.... ...+
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e-------------------------rl~e 177 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE-------------------------RLAE 177 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH-------------------------HHHH
Confidence 887533322 236789999999999999988863221 1356
Q ss_pred HHHHHHHcCCeeEEe
Q 030565 151 FFTSCENAGLEVKHL 165 (175)
Q Consensus 151 ~~~~~~~~g~~~~~~ 165 (175)
+.+.|++.+|+..++
T Consensus 178 i~~~l~~~~~~~k~i 192 (248)
T COG4123 178 IIELLKSYNLEPKRI 192 (248)
T ss_pred HHHHHHhcCCCceEE
Confidence 777788878776654
No 57
>PRK14968 putative methyltransferase; Provisional
Probab=99.66 E-value=7.3e-15 Score=103.28 Aligned_cols=135 Identities=19% Similarity=0.224 Sum_probs=95.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCC-cceeeccCCCCCCCCCCCccEEEeC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA-LPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++++|||+|||+|..+..++.. +.+|+++|+|+.++ +.++++...++.... +..+..++.+. +..++||+|+++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~d~vi~n 97 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAV-ECAKCNAKLNNIRNNGVEVIRSDLFEP--FRGDKFDVILFN 97 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHH-HHHHHHHHHcCCCCcceEEEecccccc--ccccCceEEEEC
Confidence 46789999999999999999887 88999999999998 777777776655221 33344433332 334489999998
Q ss_pred CcccCcc------------------cchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcc
Q 030565 86 DILLYVK------------------QYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKED 147 (175)
Q Consensus 86 ~~l~~~~------------------~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (175)
..++... ....+..+++++.++|+|||.+++..+.. ..
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~------------------------~~ 153 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL------------------------TG 153 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc------------------------CC
Confidence 7653211 01234578999999999999887753211 01
Q ss_pred hhHHHHHHHHcCCeeEEecceE
Q 030565 148 ETIFFTSCENAGLEVKHLGSRV 169 (175)
Q Consensus 148 ~~~~~~~~~~~g~~~~~~~~~~ 169 (175)
...+.+.++++||++....+..
T Consensus 154 ~~~l~~~~~~~g~~~~~~~~~~ 175 (188)
T PRK14968 154 EDEVLEYLEKLGFEAEVVAEEK 175 (188)
T ss_pred HHHHHHHHHHCCCeeeeeeecc
Confidence 3678889999999877765443
No 58
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.65 E-value=2.7e-16 Score=108.80 Aligned_cols=103 Identities=18% Similarity=0.247 Sum_probs=80.5
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEeCCcc
Q 030565 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILASDIL 88 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~~~l 88 (175)
..+||+|||||..-.++--..+..||++|+++.| ++.+.+....+.. .++....+..++.++ .+++++|+|++..++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~m-ee~~~ks~~E~k~-~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKM-EEIADKSAAEKKP-LQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHH-HHHHHHHHhhccC-cceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 3479999999999888753448899999999999 4777666666533 344434444555665 788999999999999
Q ss_pred cCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 89 LYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+... +..+.++++.|+|+|||++++.
T Consensus 156 CSve---~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 156 CSVE---DPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred eccC---CHHHHHHHHHHhcCCCcEEEEE
Confidence 5444 5569999999999999999987
No 59
>PRK05785 hypothetical protein; Provisional
Probab=99.65 E-value=8.2e-16 Score=111.15 Aligned_cols=90 Identities=14% Similarity=0.314 Sum_probs=69.7
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
++.+|||+|||||.++..+++..+.+|+|+|+|++|+ +.++.+. ..+.. ....+|+++++||+|+++.+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml-~~a~~~~---------~~~~~-d~~~lp~~d~sfD~v~~~~~ 119 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENML-KMNLVAD---------DKVVG-SFEALPFRDKSFDVVMSSFA 119 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHH-HHHHhcc---------ceEEe-chhhCCCCCCCEEEEEecCh
Confidence 4689999999999999999887557899999999998 4433221 11222 22456788899999999999
Q ss_pred ccCcccchHHHHHHHHHHhhcCCC
Q 030565 88 LLYVKQYSNLIKSLSVLLKSYKPK 111 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pg 111 (175)
+++.. ++.++++++.|+|||.
T Consensus 120 l~~~~---d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 120 LHASD---NIEKVIAEFTRVSRKQ 140 (226)
T ss_pred hhccC---CHHHHHHHHHHHhcCc
Confidence 85544 4559999999999994
No 60
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.65 E-value=2.2e-15 Score=113.30 Aligned_cols=147 Identities=18% Similarity=0.091 Sum_probs=87.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC-CCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
++.+|||+|||+|.++..+++. +.+|+++|+|+.|+ +.++++....... .....+.+...+. +..+++||+|++.+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml-~~A~~~~~~~~~~~~~~~~~~f~~~Dl-~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMV-AEAERRAKEALAALPPEVLPKFEANDL-ESLSGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHH-HHHHHHHHhcccccccccceEEEEcch-hhcCCCcCEEEEcC
Confidence 5789999999999999999886 78999999999998 6666554432110 0011222222222 22357899999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeecc-ccCCC-----CCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCC
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL-TKNEQ-----GEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGL 160 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (175)
+++|.++ +....+++.+.+. .++|. ++.. +.... ...+.+.... ...+.+ ..+.+++.++++++||
T Consensus 221 vL~H~p~-~~~~~ll~~l~~l-~~g~l-iIs~~p~~~~~~~l~~~g~~~~g~~----~~~r~y-~~s~eel~~lL~~AGf 292 (315)
T PLN02585 221 VLIHYPQ-DKADGMIAHLASL-AEKRL-IISFAPKTLYYDILKRIGELFPGPS----KATRAY-LHAEADVERALKKAGW 292 (315)
T ss_pred EEEecCH-HHHHHHHHHHHhh-cCCEE-EEEeCCcchHHHHHHHHHhhcCCCC----cCceee-eCCHHHHHHHHHHCCC
Confidence 9866543 3455677777754 55544 4432 21100 0011110000 000111 1246899999999999
Q ss_pred eeEEe
Q 030565 161 EVKHL 165 (175)
Q Consensus 161 ~~~~~ 165 (175)
++...
T Consensus 293 ~v~~~ 297 (315)
T PLN02585 293 KVARR 297 (315)
T ss_pred EEEEE
Confidence 97755
No 61
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.65 E-value=2.5e-15 Score=119.75 Aligned_cols=106 Identities=20% Similarity=0.226 Sum_probs=79.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC-CCCCCCCCccEEEeC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~fD~i~~~ 85 (175)
.++++|||||||+|.++..+++. +.+|+|+|+++.+++.+.+. +.....+..+..+..+ ..++++++||+|++.
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~----~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~ 110 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESI----NGHYKNVKFMCADVTSPDLNISDGSVDLIFSN 110 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHH----hccCCceEEEEecccccccCCCCCCEEEEehh
Confidence 35679999999999999999887 67899999999998433221 1111233444444432 345667899999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
.++++.. .+.+..+++++.++|+|||.+++..
T Consensus 111 ~~l~~l~-~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 111 WLLMYLS-DKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred hhHHhCC-HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 9986654 4457799999999999999988864
No 62
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.65 E-value=1.8e-15 Score=116.06 Aligned_cols=106 Identities=13% Similarity=0.131 Sum_probs=79.7
Q ss_pred CCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEeCC
Q 030565 9 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILASD 86 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~~ 86 (175)
+++|||+|||+|.+++.+++.. ..+|+++|+|+.++ +.+++|.+.++.. ....+.+.+.+... ..+.+||+|+++.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av-~~A~~N~~~n~~~-~~~~v~~~~~D~l~~~~~~~fDlIlsNP 306 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAV-ASSRLNVETNMPE-ALDRCEFMINNALSGVEPFRFNAVLCNP 306 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCcc-cCceEEEEEccccccCCCCCEEEEEECc
Confidence 4689999999999999998875 56899999999998 8888888777542 12234444444443 3345899999987
Q ss_pred cccCccc---chHHHHHHHHHHhhcCCCCceeec
Q 030565 87 ILLYVKQ---YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~---~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+ |... .....++++++.++|+|||.++++
T Consensus 307 Pf-h~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 307 PF-HQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred Cc-ccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 76 3321 123458899999999999999986
No 63
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.65 E-value=3.1e-15 Score=112.90 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=98.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||||||+|.++..+++.. ..+++++|. +.++ +.++++....+...++..+..+..+ .++ +.+|+|++
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~gl~~rv~~~~~d~~~-~~~--~~~D~v~~ 221 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAI-DLVNENAAEKGVADRMRGIAVDIYK-ESY--PEADAVLF 221 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHH-HHHHHHHHhCCccceEEEEecCccC-CCC--CCCCEEEe
Confidence 3456899999999999999998875 567999998 6787 7777777777765444444443322 122 34799999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCc------eEeeeeccCCCcchhHHHHHHHHc
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPA------FLMSWRRRIGKEDETIFFTSCENA 158 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 158 (175)
+.+++++. .+....+++++++.|+|||++++......+........... +..... .....+++.++++++
T Consensus 222 ~~~lh~~~-~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~e~~~ll~~a 297 (306)
T TIGR02716 222 CRILYSAN-EQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVL---GFKEQARYKEILESL 297 (306)
T ss_pred EhhhhcCC-hHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccc---cCCCHHHHHHHHHHc
Confidence 98885443 45557899999999999999999843222111110000000 000011 111248999999999
Q ss_pred CCeeEE
Q 030565 159 GLEVKH 164 (175)
Q Consensus 159 g~~~~~ 164 (175)
||+..+
T Consensus 298 Gf~~v~ 303 (306)
T TIGR02716 298 GYKDVT 303 (306)
T ss_pred CCCeeE
Confidence 998554
No 64
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.64 E-value=3.4e-15 Score=108.24 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=93.0
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++....+....+.... ++ .+..+++||+|++..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i-~~a~~~~~~~~~~~~i~~~~---~d-~~~~~~~fD~v~~~~ 135 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMV-EEARERAPEAGLAGNITFEV---GD-LESLLGRFDTVVCLD 135 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHhcCCccCcEEEE---cC-chhccCCcCEEEEcc
Confidence 45789999999999999999887 67799999999998 66666655544322233332 33 344467899999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC--CCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
++.+++ .+.+..+++++.+.+++++.+.+ ........ ..+...++... ........+..++.+.++++||++.+
T Consensus 136 ~l~~~~-~~~~~~~l~~l~~~~~~~~~i~~-~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~l~~~Gf~~~~ 211 (230)
T PRK07580 136 VLIHYP-QEDAARMLAHLASLTRGSLIFTF-APYTPLLALLHWIGGLFPGPS--RTTRIYPHREKGIRRALAAAGFKVVR 211 (230)
T ss_pred hhhcCC-HHHHHHHHHHHHhhcCCeEEEEE-CCccHHHHHHHHhccccCCcc--CCCCccccCHHHHHHHHHHCCCceEe
Confidence 985544 45677889999887654442222 11110000 00000000000 00011112357899999999999887
Q ss_pred ecc
Q 030565 165 LGS 167 (175)
Q Consensus 165 ~~~ 167 (175)
+..
T Consensus 212 ~~~ 214 (230)
T PRK07580 212 TER 214 (230)
T ss_pred eee
Confidence 743
No 65
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.64 E-value=4.1e-15 Score=105.57 Aligned_cols=105 Identities=16% Similarity=0.154 Sum_probs=76.3
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
...++.+|||+|||+|.++..+++.. +.+|+++|+++.++ +.++++...++...++..+..+..+.++...+.||.|
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~-~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V 115 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAI-NLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRI 115 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEE
Confidence 44578899999999999999988754 35799999999998 7788787776643333333333222222234689999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
++.... ..+..+++++.+.|+|||++++
T Consensus 116 ~~~~~~------~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 116 FIGGGS------EKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred EECCCc------ccHHHHHHHHHHHcCCCcEEEE
Confidence 985422 2345899999999999998876
No 66
>PRK06202 hypothetical protein; Provisional
Probab=99.63 E-value=5.9e-15 Score=107.25 Aligned_cols=151 Identities=18% Similarity=0.212 Sum_probs=91.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-----CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-----~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
++.+|||+|||+|.++..+++.. +.+|+|+|+|+.|+ +.++.+....+. ..... ..+.++..+++||+|
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l-~~a~~~~~~~~~----~~~~~-~~~~l~~~~~~fD~V 133 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAV-AFARANPRRPGV----TFRQA-VSDELVAEGERFDVV 133 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHH-HHHHhccccCCC----eEEEE-ecccccccCCCccEE
Confidence 56789999999999998887531 34899999999998 555544333222 22221 123344456799999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC------CCCCCCCCce-----EeeeeccCCCcchhHH
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE------GTEGLPWPAF-----LMSWRRRIGKEDETIF 151 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~------~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 151 (175)
+++.+++|.. .+++..+++++.++++ |.+++......... .........+ ..+..+.+. .+++
T Consensus 134 ~~~~~lhh~~-d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~---~~el 207 (232)
T PRK06202 134 TSNHFLHHLD-DAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYT---PAEL 207 (232)
T ss_pred EECCeeecCC-hHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcC---HHHH
Confidence 9999996665 3456789999999998 44444321111000 0000000000 111122332 4888
Q ss_pred HHHHHHcCCeeEEecceEEE
Q 030565 152 FTSCENAGLEVKHLGSRVYC 171 (175)
Q Consensus 152 ~~~~~~~g~~~~~~~~~~~~ 171 (175)
.+++++ ||++...-.-.|.
T Consensus 208 ~~ll~~-Gf~~~~~~~~~~~ 226 (232)
T PRK06202 208 AALAPQ-GWRVERQWPFRYL 226 (232)
T ss_pred HHHhhC-CCeEEeccceeeE
Confidence 999998 9998887544443
No 67
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.63 E-value=6.3e-16 Score=107.01 Aligned_cols=101 Identities=22% Similarity=0.326 Sum_probs=73.6
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCccc
Q 030565 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILL 89 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (175)
.++||+|||.|.++..|+.+ ..+++++|+|+..+ +.+++.... . ..+..+..+..+. .+.++||+|+.+.++|
T Consensus 45 ~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al-~~Ar~Rl~~--~-~~V~~~~~dvp~~--~P~~~FDLIV~SEVlY 117 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPR-CDRLLAVDISPRAL-ARARERLAG--L-PHVEWIQADVPEF--WPEGRFDLIVLSEVLY 117 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHH-HHHHHHTTT----SSEEEEES-TTT-----SS-EEEEEEES-GG
T ss_pred ceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHH-HHHHHhcCC--C-CCeEEEECcCCCC--CCCCCeeEEEEehHhH
Confidence 57999999999999999887 67899999999998 555544432 2 2233333333222 3567999999999999
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 90 YVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 90 ~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|..+.+++..++..+.+.|+|||.+++.
T Consensus 118 YL~~~~~L~~~l~~l~~~L~pgG~LV~g 145 (201)
T PF05401_consen 118 YLDDAEDLRAALDRLVAALAPGGHLVFG 145 (201)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 9987788999999999999999999986
No 68
>PRK14967 putative methyltransferase; Provisional
Probab=99.63 E-value=7.6e-15 Score=106.06 Aligned_cols=110 Identities=16% Similarity=0.216 Sum_probs=77.3
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||+|||+|.++..+++....+|+++|+|+.++ +.++++...++. .+..+..++.+ ...+++||+|+++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l-~~a~~n~~~~~~--~~~~~~~d~~~--~~~~~~fD~Vi~n 108 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAV-RSARLNALLAGV--DVDVRRGDWAR--AVEFRPFDVVVSN 108 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHhCC--eeEEEECchhh--hccCCCeeEEEEC
Confidence 345789999999999999999886334899999999998 777777776554 22333333322 1345689999998
Q ss_pred CcccCccc------------------chHHHHHHHHHHhhcCCCCceeecccc
Q 030565 86 DILLYVKQ------------------YSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 86 ~~l~~~~~------------------~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
..+..... ...+..+++++.+.|+|||++++....
T Consensus 109 pPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 109 PPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 65321111 112457888999999999998886433
No 69
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.63 E-value=8.2e-15 Score=105.58 Aligned_cols=104 Identities=21% Similarity=0.292 Sum_probs=76.7
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
++.+|||+|||+|..+..+++... .+++++|+++.++ +.++.+.. ...++.....+.. ..++.+++||+|+++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~-~~~~~~~~---~~~~i~~~~~d~~-~~~~~~~~~D~i~~~ 113 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEML-EVAKKKSE---LPLNIEFIQADAE-ALPFEDNSFDAVTIA 113 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHH-HHHHHHhc---cCCCceEEecchh-cCCCCCCcEEEEEEe
Confidence 678999999999999999988765 4899999999987 55555443 1122333333332 233455789999998
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
.++.+. +++..+++++.+.|+|||.+++...
T Consensus 114 ~~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 114 FGLRNV---TDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred eeeCCc---ccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 887333 3566999999999999999988643
No 70
>PRK06922 hypothetical protein; Provisional
Probab=99.62 E-value=4.3e-15 Score=119.39 Aligned_cols=109 Identities=18% Similarity=0.224 Sum_probs=79.7
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCCCCccEE
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~i 82 (175)
..++.+|||+|||+|..+..+++.. +.+|+|+|+|+.|+ +.++.+....+. .+..+..+.. .++ +.+++||+|
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML-e~Ararl~~~g~--~ie~I~gDa~-dLp~~fedeSFDvV 491 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI-DTLKKKKQNEGR--SWNVIKGDAI-NLSSSFEKESVDTI 491 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhcCC--CeEEEEcchH-hCccccCCCCEEEE
Confidence 4568899999999999998887754 67899999999998 666555443322 2222222222 233 567799999
Q ss_pred EeCCcccCcc----------cchHHHHHHHHHHhhcCCCCceeecc
Q 030565 83 LASDILLYVK----------QYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 83 ~~~~~l~~~~----------~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+++.+++++. ..+++.+++++++++|||||.+++..
T Consensus 492 Vsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 492 VYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 9998874332 13567899999999999999999974
No 71
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.62 E-value=1.4e-14 Score=104.04 Aligned_cols=108 Identities=14% Similarity=0.086 Sum_probs=75.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCC-------CCCcceeeccCCCCCCC---CCC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI-------TPALPHIKHSWGDAFPI---PNP 77 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~---~~~ 77 (175)
++.+|||+|||.|..++.||+. |.+|+|+|+|+.+++...+++...... ......+.+.+++.... ..+
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 5679999999999999999987 999999999999984432221111000 00112334444444433 235
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.||.|+-..++.+. ..+...+.++.+.++|+|||+.++.
T Consensus 116 ~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 116 DVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred CeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 89999998887444 4667789999999999999975554
No 72
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.62 E-value=6.1e-15 Score=112.34 Aligned_cols=105 Identities=12% Similarity=0.181 Sum_probs=79.2
Q ss_pred CCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030565 9 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
.++|||+|||+|.++..+++.. ..+|+++|+|+.++ +.++.+...++... . +.+.+......++||+|+++..
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al-~~A~~nl~~n~l~~--~---~~~~D~~~~~~~~fDlIvsNPP 270 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAAL-ESSRATLAANGLEG--E---VFASNVFSDIKGRFDMIISNPP 270 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCC--E---EEEcccccccCCCccEEEECCC
Confidence 4589999999999999998874 45899999999998 78888888776621 1 2223333334578999999988
Q ss_pred ccCcc--cchHHHHHHHHHHhhcCCCCceeeccc
Q 030565 88 LLYVK--QYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 88 l~~~~--~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
++... .......+++++.+.|+|||.++++..
T Consensus 271 FH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 271 FHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 63221 233557999999999999999988743
No 73
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.61 E-value=8.3e-15 Score=104.80 Aligned_cols=111 Identities=15% Similarity=0.093 Sum_probs=76.6
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCC-------CCCcceeeccCCCCCCCC---CC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI-------TPALPHIKHSWGDAFPIP---NP 77 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~---~~ 77 (175)
++.+|||+|||.|..+..||++ |.+|+|+|+|+.+++...+++...... ......+.+.++|..... .+
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 6689999999999999999987 999999999999984322221110000 000122344444544332 35
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030565 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
.||.|+-..++.+. ..+.....++.+.++|+|||++++....
T Consensus 113 ~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 113 PVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred CcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 79999998877444 4666788999999999999987666443
No 74
>PRK04266 fibrillarin; Provisional
Probab=99.61 E-value=6.7e-14 Score=100.93 Aligned_cols=140 Identities=8% Similarity=-0.015 Sum_probs=85.8
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC--CCCCCCcc
Q 030565 4 REWIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF--PIPNPDWD 80 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fD 80 (175)
....++.+|||+|||+|..+..+++..+ ..|+++|+++.|++ .+.++.... .++..+..+..+.. ....++||
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~-~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMR-ELLEVAEER---KNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHH-HHHHHhhhc---CCcEEEECCCCCcchhhhccccCC
Confidence 3455788999999999999999988753 57999999999984 333333321 12233322222110 11134699
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCC
Q 030565 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGL 160 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (175)
+|++... .......+++++.++|||||.++++++... . .+.....++ .+...+.++++||
T Consensus 144 ~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~--~--------d~~~~~~~~-----~~~~~~~l~~aGF 203 (226)
T PRK04266 144 VIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLLLAIKARS--I--------DVTKDPKEI-----FKEEIRKLEEGGF 203 (226)
T ss_pred EEEECCC-----ChhHHHHHHHHHHHhcCCCcEEEEEEeccc--c--------cCcCCHHHH-----HHHHHHHHHHcCC
Confidence 9986422 222334678999999999999999633210 0 000000011 1345688999999
Q ss_pred eeEEecc
Q 030565 161 EVKHLGS 167 (175)
Q Consensus 161 ~~~~~~~ 167 (175)
++.+..+
T Consensus 204 ~~i~~~~ 210 (226)
T PRK04266 204 EILEVVD 210 (226)
T ss_pred eEEEEEc
Confidence 9776633
No 75
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.60 E-value=2.6e-14 Score=101.21 Aligned_cols=141 Identities=16% Similarity=0.212 Sum_probs=87.8
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEEEeC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i~~~ 85 (175)
.++++|||+|||+|.++..+++..+..++++|+++.++ +.++. .+. ..+..+..+.+ ++.+++||+|+++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i-~~a~~----~~~----~~~~~d~~~~l~~~~~~sfD~Vi~~ 82 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGV-LACVA----RGV----NVIQGDLDEGLEAFPDKSFDYVILS 82 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHH-HHHHH----cCC----eEEEEEhhhcccccCCCCcCEEEEh
Confidence 35789999999999999999776677899999999987 44332 122 33333333323 3556799999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC--------CCCC--CCCC-ceE-eeeeccCCCcchhHHHH
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--------GTEG--LPWP-AFL-MSWRRRIGKEDETIFFT 153 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~--------~~~~--~~~~-~~~-~~~~~~~~~~~~~~~~~ 153 (175)
.++++.. +...+++++.+.+++ .++..+...... ..+. ...+ .+. ....+.+ +..++.+
T Consensus 83 ~~l~~~~---d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~ 153 (194)
T TIGR02081 83 QTLQATR---NPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFC---TIADFED 153 (194)
T ss_pred hHhHcCc---CHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccC---cHHHHHH
Confidence 9995554 455889999887664 344322211000 0000 0000 011 0111112 3588999
Q ss_pred HHHHcCCeeEEe
Q 030565 154 SCENAGLEVKHL 165 (175)
Q Consensus 154 ~~~~~g~~~~~~ 165 (175)
+++++||++.+.
T Consensus 154 ll~~~Gf~v~~~ 165 (194)
T TIGR02081 154 LCGELNLRILDR 165 (194)
T ss_pred HHHHCCCEEEEE
Confidence 999999998775
No 76
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.59 E-value=1.5e-14 Score=103.16 Aligned_cols=101 Identities=16% Similarity=0.084 Sum_probs=73.0
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..++.+|||+|||+|..+..+++.. +.+|+++|++++++ +.++++....+...++..+..+..+..+ ..++||+|+
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~-~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Ii 147 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELA-IYAAQNIERLGYWGVVEVYHGDGKRGLE-KHAPFDAII 147 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCCcEEEEECCcccCCc-cCCCccEEE
Confidence 3467899999999999999988765 35899999999998 6777777766653223333333322222 346899999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+..++.+ . -+++.+.|+|||++++.
T Consensus 148 ~~~~~~~---~------~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 148 VTAAAST---I------PSALVRQLKDGGVLVIP 172 (205)
T ss_pred EccCcch---h------hHHHHHhcCcCcEEEEE
Confidence 9877622 2 24788999999998875
No 77
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.59 E-value=3.1e-15 Score=97.40 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=80.7
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEEEeCCc
Q 030565 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILASDI 87 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i~~~~~ 87 (175)
|.+|||+|||+|.+++.+++....+++++|+++..+ +.++.+....+...++..+..+..+.. ...+++||+|+++..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~-~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAV-ELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHH-HHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHH-HHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 568999999999999999888548899999999997 888888888776555555554443332 356789999999888
Q ss_pred ccCccc-----chHHHHHHHHHHhhcCCCCceeecc
Q 030565 88 LLYVKQ-----YSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 88 l~~~~~-----~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+..... ......+++++.+.|+|||.+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 632211 1134688999999999999888753
No 78
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.59 E-value=1.7e-14 Score=104.97 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=75.7
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.+.+|||+|||+|.++..+++.. ..+++++|+++.++ +.++.... .++..+..+.. ..++.+++||+|++..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~-~~~~~~~~-----~~~~~~~~d~~-~~~~~~~~fD~vi~~~ 106 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGML-AQAKTKLS-----ENVQFICGDAE-KLPLEDSSFDLIVSNL 106 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHH-HHHHHhcC-----CCCeEEecchh-hCCCCCCceeEEEEhh
Confidence 45789999999999999998875 45689999999997 45443332 12233333332 3345667999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
++++.. +...+++++.++|+|||.+++..+
T Consensus 107 ~l~~~~---~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 107 ALQWCD---DLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred hhhhcc---CHHHHHHHHHHHcCCCcEEEEEeC
Confidence 984443 455999999999999999998743
No 79
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.58 E-value=1.1e-13 Score=103.23 Aligned_cols=106 Identities=17% Similarity=0.248 Sum_probs=76.7
Q ss_pred CCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030565 9 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
+.+|||+|||+|.+++.+++.. +.+|+++|+|+.++ +.+++|...++...++..+..++.+. .++++||+|+++..
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al-~~A~~n~~~~~~~~~i~~~~~D~~~~--~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDAL-AVAEINIERHGLEDRVTLIQSDLFAA--LPGRKYDLIVSNPP 198 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECchhhc--cCCCCccEEEECCC
Confidence 5789999999999999998865 56899999999998 88888888877643444444443222 33458999999743
Q ss_pred ccC-------------cc---------cchHHHHHHHHHHhhcCCCCceeec
Q 030565 88 LLY-------------VK---------QYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 88 l~~-------------~~---------~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
... .+ .......+++++.+.|+|||++++.
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 210 00 0112357788999999999988773
No 80
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.58 E-value=6.9e-15 Score=102.60 Aligned_cols=106 Identities=19% Similarity=0.241 Sum_probs=80.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCC-CCCccEEE
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP-NPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~i~ 83 (175)
.-...+|.|||||+|..+..++++. +..++|+|.|++|++++.++ . +...+..++.-... +..+|+++
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-l---------p~~~f~~aDl~~w~p~~~~dllf 97 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-L---------PDATFEEADLRTWKPEQPTDLLF 97 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-C---------CCCceecccHhhcCCCCccchhh
Confidence 3345789999999999999998887 77899999999999544332 1 23344444444433 34799999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCC
Q 030565 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQG 124 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~ 124 (175)
++.++++.++.. .++..+...|.|||.+.+..+.....
T Consensus 98 aNAvlqWlpdH~---~ll~rL~~~L~Pgg~LAVQmPdN~de 135 (257)
T COG4106 98 ANAVLQWLPDHP---ELLPRLVSQLAPGGVLAVQMPDNLDE 135 (257)
T ss_pred hhhhhhhccccH---HHHHHHHHhhCCCceEEEECCCccCc
Confidence 999996666555 99999999999999999997776543
No 81
>PTZ00146 fibrillarin; Provisional
Probab=99.58 E-value=1.6e-13 Score=101.33 Aligned_cols=106 Identities=9% Similarity=0.006 Sum_probs=70.6
Q ss_pred CccccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC--CCCCCCC
Q 030565 3 HREWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPNPD 78 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 78 (175)
...+.++.+|||+|||+|.++..++...+ ..|+++|+++.+++...+......+ +..+..+.... .....++
T Consensus 127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~N----I~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPN----IVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCC----CEEEECCccChhhhhcccCC
Confidence 34566789999999999999999999864 4699999999875333332222222 23333332211 1223457
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
||+|++.... .++...++.++.+.|||||.+++.
T Consensus 203 vDvV~~Dva~-----pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 203 VDVIFADVAQ-----PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCEEEEeCCC-----cchHHHHHHHHHHhccCCCEEEEE
Confidence 9999886542 233446667899999999998884
No 82
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.57 E-value=2.3e-14 Score=100.39 Aligned_cols=154 Identities=20% Similarity=0.218 Sum_probs=106.2
Q ss_pred cEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC-CCC------CCCCccEE
Q 030565 11 RCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPI------PNPDWDLI 82 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~fD~i 82 (175)
+|||||||||..+.++|+.+ ...-.-+|.++... ..+...+...+.....+.+.++..+. .+. ..++||.|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~-~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR-PSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH-hhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 49999999999999999987 56678889988764 44444444444433335556666443 222 35589999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCC----CCceEeeeeccCCCcchhHHHHHHHHc
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP----WPAFLMSWRRRIGKEDETIFFTSCENA 158 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (175)
++.+++ |....+....+++.+.+.|+|||.+++- +.....+.+..+ +..++......++..|.+++.++++++
T Consensus 107 ~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~Y--GPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~ 183 (204)
T PF06080_consen 107 FCINML-HISPWSAVEGLFAGAARLLKPGGLLFLY--GPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAH 183 (204)
T ss_pred eehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEe--CCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHC
Confidence 999999 7777888899999999999999966654 433333222211 112333333455666778999999999
Q ss_pred CCeeEEecce
Q 030565 159 GLEVKHLGSR 168 (175)
Q Consensus 159 g~~~~~~~~~ 168 (175)
|++.++.-+|
T Consensus 184 GL~l~~~~~M 193 (204)
T PF06080_consen 184 GLELEEDIDM 193 (204)
T ss_pred CCccCccccc
Confidence 9987776443
No 83
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.57 E-value=2.3e-15 Score=105.85 Aligned_cols=138 Identities=20% Similarity=0.237 Sum_probs=92.1
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEeCCcc
Q 030565 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILASDIL 88 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~~~l 88 (175)
+++||||||||..+..+... ..+++|+|+|.+|+.++..+ +.......- +....++ .....||+|.+.+++
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eK-----g~YD~L~~A--ea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEK-----GLYDTLYVA--EAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred ceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhc-----cchHHHHHH--HHHHHhhhccCCcccchhhhhHH
Confidence 68999999999999998665 88899999999998443222 221100000 0001122 345689999999999
Q ss_pred cCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEecc
Q 030565 89 LYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGS 167 (175)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 167 (175)
-+....+ .++.-....|+|||.|.++.-..... ..|-.....++.. ........++..||++..+.+
T Consensus 199 ~YlG~Le---~~~~~aa~~L~~gGlfaFSvE~l~~~--------~~f~l~ps~RyAH-~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 199 PYLGALE---GLFAGAAGLLAPGGLFAFSVETLPDD--------GGFVLGPSQRYAH-SESYVRALLAASGLEVIAIED 265 (287)
T ss_pred Hhhcchh---hHHHHHHHhcCCCceEEEEecccCCC--------CCeecchhhhhcc-chHHHHHHHHhcCceEEEeec
Confidence 7766555 89999999999999999974333222 1122222223323 346677889999999888754
No 84
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.57 E-value=1.5e-14 Score=101.11 Aligned_cols=107 Identities=13% Similarity=0.229 Sum_probs=82.8
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
.+.-|||||||+|..+..+... |...+|+|+|+.|++.+.++..+ . ..+..+.+..+|+.+++||-+|+..+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e~e-g------dlil~DMG~GlpfrpGtFDg~ISISA 121 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVERELE-G------DLILCDMGEGLPFRPGTFDGVISISA 121 (270)
T ss_pred CCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhhhh-c------CeeeeecCCCCCCCCCccceEEEeee
Confidence 4677999999999999999776 77899999999999555554443 2 35678889999999999999998766
Q ss_pred ccCccc--------chHHHHHHHHHHhhcCCCCceeeccccCC
Q 030565 88 LLYVKQ--------YSNLIKSLSVLLKSYKPKDSQVGHLTKNE 122 (175)
Q Consensus 88 l~~~~~--------~~~~~~~l~~l~~~l~pgG~~~~~~~~~~ 122 (175)
+..... ..-+..++..++.+|++|++.++..|..+
T Consensus 122 vQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 122 VQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred eeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 632111 12356678889999999999999866554
No 85
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.56 E-value=2.2e-13 Score=102.63 Aligned_cols=105 Identities=17% Similarity=0.246 Sum_probs=76.3
Q ss_pred CcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030565 10 RRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
.+|||+|||+|.+++.+++.. +.+|+++|+|+.++ +.+++|...++...++..+..++.+. .+.++||+|+++...
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al-~~A~~n~~~~~l~~~i~~~~~D~~~~--l~~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDAL-AVAEINIERHGLEDRVTLIESDLFAA--LPGRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCCcEEEEECchhhh--CCCCCccEEEECCCC
Confidence 689999999999999998875 56899999999998 88888888777643444444443322 234589999997432
Q ss_pred c-------------Cccc---------chHHHHHHHHHHhhcCCCCceeec
Q 030565 89 L-------------YVKQ---------YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 89 ~-------------~~~~---------~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. +.+. ......+++++.+.|+|||.+++.
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1 0010 122357889999999999988874
No 86
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.55 E-value=4e-14 Score=100.29 Aligned_cols=151 Identities=17% Similarity=0.112 Sum_probs=103.0
Q ss_pred cEEEeCCCccHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CCCCCCCCccEEEe
Q 030565 11 RCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AFPIPNPDWDLILA 84 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~fD~i~~ 84 (175)
+|||+|||.|.....+.+.- +..|++.|.||.++ +..+.+...... .+.....+... ..+...+++|+|++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai-~~vk~~~~~~e~--~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI-ELVKKSSGYDES--RVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH-HHHHhccccchh--hhcccceeccchhccCCCCcCccceEEE
Confidence 79999999999998887753 24699999999997 666655544322 22222222221 22456779999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEee-eeccCCCc----chhHHHHHHHHcC
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMS-WRRRIGKE----DETIFFTSCENAG 159 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~g 159 (175)
..++ ..-..+.+..+++++.+++||||.+++-.|+..+....-+.+...+-.. |.|..+.. +.+.+.+++.++|
T Consensus 151 IFvL-SAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ag 229 (264)
T KOG2361|consen 151 IFVL-SAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAG 229 (264)
T ss_pred EEEE-eccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcc
Confidence 9888 5556789999999999999999999998777665543333222222211 22222221 3578889999999
Q ss_pred CeeEEe
Q 030565 160 LEVKHL 165 (175)
Q Consensus 160 ~~~~~~ 165 (175)
|..+++
T Consensus 230 f~~~~~ 235 (264)
T KOG2361|consen 230 FEEVQL 235 (264)
T ss_pred cchhcc
Confidence 986655
No 87
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.55 E-value=1.4e-14 Score=106.99 Aligned_cols=112 Identities=20% Similarity=0.341 Sum_probs=74.5
Q ss_pred CCCcEEEeCCCccH----HHHHHHHhC------CCcEEEEeCChHHHHHHHHHHHhh----CCCC---------------
Q 030565 8 ERRRCIELGSGTGA----LAIFLRKAM------NLDITTSDYNDQEIEDNIAYNSTT----NGIT--------------- 58 (175)
Q Consensus 8 ~~~~vLDlGcG~G~----~~~~l~~~~------~~~v~~~D~s~~~l~~~~~~~~~~----~~~~--------------- 58 (175)
++.+|+|+|||+|. +++.+++.. ..+|+|+|+|+.|+ +.+++.... .+..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L-~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKAL-EKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHH-HHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 45789999999996 455555542 35799999999998 554433210 0000
Q ss_pred ---CC-cceeeccCCCCC--CCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030565 59 ---PA-LPHIKHSWGDAF--PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 59 ---~~-~~~~~~~~~~~~--~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
.. -..+.+...+.. +.+.++||+|++.+++.|.. .+...++++++++.|+|||.+++...+.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~-~~~~~~~l~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD-EPTQRKLLNRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC-HHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 00 012333333332 23467999999999985554 5677799999999999999999864433
No 88
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.55 E-value=1.5e-13 Score=104.63 Aligned_cols=108 Identities=17% Similarity=0.085 Sum_probs=77.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||+|||+|.+++.++.. +.+++|+|+++.|+ ..++.|....+... +.....+.. .++..+++||+|+++
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~-~~a~~nl~~~g~~~-i~~~~~D~~-~l~~~~~~~D~Iv~d 255 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMV-AGARINLEHYGIED-FFVKRGDAT-KLPLSSESVDAIATD 255 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHH-HHHHHHHHHhCCCC-CeEEecchh-cCCcccCCCCEEEEC
Confidence 446789999999999999887665 88999999999998 77777877766632 222222222 244456799999997
Q ss_pred CcccCcc-----cc-hHHHHHHHHHHhhcCCCCceeec
Q 030565 86 DILLYVK-----QY-SNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~-----~~-~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..+.... .. .....+++++.+.|+|||++++.
T Consensus 256 PPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 256 PPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred CCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 5431100 01 22468999999999999988875
No 89
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.54 E-value=6.5e-14 Score=105.41 Aligned_cols=108 Identities=12% Similarity=0.079 Sum_probs=72.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCC----CccE
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP----DWDL 81 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~fD~ 81 (175)
++.+|||+|||+|..+..+++.. +.+|+++|+|+.|+ +.+.++.........+..+..+..+..+.... ...+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL-~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADAL-KESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHH-HHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 56889999999999999988876 57899999999999 55544444322212223333333332222222 2334
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+++..++++ ...++...+++++++.|+|||.+++.
T Consensus 142 ~~~gs~~~~-~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIGN-FTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEecccccC-CCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 545556644 44677889999999999999999875
No 90
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.54 E-value=5.9e-14 Score=100.58 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=73.6
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCCCCcc
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWD 80 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD 80 (175)
...++.+|||+|||+|..+..+++..+ .+|+++|+++.++ +.++++....+. ..+.+..++... ...+.||
T Consensus 73 ~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~-~~a~~~l~~~g~----~~v~~~~gd~~~~~~~~~~fD 147 (212)
T PRK13942 73 DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELA-EKAKKTLKKLGY----DNVEVIVGDGTLGYEENAPYD 147 (212)
T ss_pred CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCC----CCeEEEECCcccCCCcCCCcC
Confidence 345789999999999999999888653 5899999999998 777777776655 234444444322 2346899
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030565 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+|++.... .. +.+.+.+.|+|||++++..
T Consensus 148 ~I~~~~~~---~~------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 148 RIYVTAAG---PD------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEEECCCc---cc------chHHHHHhhCCCcEEEEEE
Confidence 99987665 22 2246777899999988853
No 91
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.54 E-value=2.7e-13 Score=99.48 Aligned_cols=128 Identities=19% Similarity=0.315 Sum_probs=88.3
Q ss_pred CCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030565 9 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
+.+|||+|||+|.++..+++.. ..+++++|+++.++ +.++.+....+.. ++..+..+..+ .+.+++||+|+++..
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~~~~-~~~~~~~d~~~--~~~~~~fD~Vi~npP 163 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEAL-AVARKNAARLGLD-NVTFLQSDWFE--PLPGGKFDLIVSNPP 163 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-eEEEEECchhc--cCcCCceeEEEECCC
Confidence 4689999999999999998864 56899999999998 7777777776652 23333333322 234678999999765
Q ss_pred ccCccc-----------------------chHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCC
Q 030565 88 LLYVKQ-----------------------YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIG 144 (175)
Q Consensus 88 l~~~~~-----------------------~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (175)
+..... ......+++++.++|+|||.+++...
T Consensus 164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~------------------------- 218 (251)
T TIGR03534 164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG------------------------- 218 (251)
T ss_pred CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC-------------------------
Confidence 421110 01124678999999999998877310
Q ss_pred CcchhHHHHHHHHcCCeeEEe
Q 030565 145 KEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 145 ~~~~~~~~~~~~~~g~~~~~~ 165 (175)
......+.+.++++||+...+
T Consensus 219 ~~~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 219 YDQGEAVRALFEAAGFADVET 239 (251)
T ss_pred ccHHHHHHHHHHhCCCCceEE
Confidence 011366788889999975444
No 92
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.53 E-value=8.7e-14 Score=100.01 Aligned_cols=101 Identities=15% Similarity=0.137 Sum_probs=72.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCC--cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNL--DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~--~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..++.+|||+|||+|.++..+++..+. +|+++|+++.++ +.++++....+. .++..+..+..+.. ...++||+|+
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~-~~A~~~~~~~g~-~~v~~~~~d~~~~~-~~~~~fD~Ii 151 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELA-EKAERRLRKLGL-DNVIVIVGDGTQGW-EPLAPYDRIY 151 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHCCC-CCeEEEECCcccCC-cccCCCCEEE
Confidence 457889999999999999999887543 499999999998 788888877665 23333332322221 2245899999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030565 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+.... . .+.+.+.+.|+|||++++..
T Consensus 152 ~~~~~---~------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 152 VTAAG---P------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred EcCCc---c------cccHHHHHhcCcCcEEEEEE
Confidence 87654 2 23356788999999988864
No 93
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=1.8e-13 Score=100.74 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=80.2
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...+.+|||+|||.|.+++.+++.. ..+++.+|.|...+ +.+++|...|+.... .+..+.. ..+.. ++||.|++
T Consensus 156 ~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av-~~ar~Nl~~N~~~~~--~v~~s~~-~~~v~-~kfd~Iis 230 (300)
T COG2813 156 PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAV-ESARKNLAANGVENT--EVWASNL-YEPVE-GKFDLIIS 230 (300)
T ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHH-HHHHHhHHHcCCCcc--EEEEecc-ccccc-ccccEEEe
Confidence 3345599999999999999999975 46899999999998 899999999888321 1111111 11222 39999999
Q ss_pred CCcccCcccchH---HHHHHHHHHhhcCCCCceeeccc
Q 030565 85 SDILLYVKQYSN---LIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 85 ~~~l~~~~~~~~---~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
+..+ |...... -.+++++..+.|++||.+.++..
T Consensus 231 NPPf-h~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 231 NPPF-HAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CCCc-cCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 9997 4332221 24899999999999999988754
No 94
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.51 E-value=6.4e-13 Score=97.49 Aligned_cols=131 Identities=15% Similarity=0.167 Sum_probs=88.7
Q ss_pred CCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEeCC
Q 030565 9 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILASD 86 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~~ 86 (175)
+.+|||+|||+|.+++.+++.. +.+|+++|+|+.++ +.+++|...++. ..+..++.+..+ ...++||+|+++.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al-~~A~~N~~~~~~----~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAV-RCARRNLADAGG----TVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCC----EEEEeechhhcchhcCCCEeEEEECC
Confidence 3589999999999999988764 56899999999998 788888876553 334434333222 1235799999987
Q ss_pred cccCccc-----------------------chHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccC
Q 030565 87 ILLYVKQ-----------------------YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRI 143 (175)
Q Consensus 87 ~l~~~~~-----------------------~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (175)
...-... .+-+..+++.+.+.|+|||++++.+..
T Consensus 162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~----------------------- 218 (251)
T TIGR03704 162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE----------------------- 218 (251)
T ss_pred CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-----------------------
Confidence 6421000 111357778888999999988874111
Q ss_pred CCcchhHHHHHHHHcCCeeEEecceE
Q 030565 144 GKEDETIFFTSCENAGLEVKHLGSRV 169 (175)
Q Consensus 144 ~~~~~~~~~~~~~~~g~~~~~~~~~~ 169 (175)
....++.+.+++.||.........
T Consensus 219 --~~~~~v~~~l~~~g~~~~~~~~~~ 242 (251)
T TIGR03704 219 --RQAPLAVEAFARAGLIARVASSEE 242 (251)
T ss_pred --chHHHHHHHHHHCCCCceeeEccc
Confidence 013667888888998755554433
No 95
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.51 E-value=1.8e-13 Score=96.88 Aligned_cols=108 Identities=10% Similarity=0.037 Sum_probs=74.7
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCCCCccEEEe
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~i~~ 84 (175)
.+.++||||||+|.++..+++.. ..+|+|+|+++.++ +.++++....+. .++..+..+..+..+ +.++++|.|++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l-~~a~~~~~~~~l-~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIV-LAANNKANKLGL-KNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHH-HHHHHHHHHhCC-CCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 45689999999999999998865 56899999999998 666666666555 233333333222111 33568999998
Q ss_pred CCcccCcccch------HHHHHHHHHHhhcCCCCceeecc
Q 030565 85 SDILLYVKQYS------NLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 85 ~~~l~~~~~~~------~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+..- .|+... ....+++++.++|||||.+++.+
T Consensus 94 ~~pd-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 94 NFPD-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred ECCC-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 7543 111110 01478999999999999998874
No 96
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.50 E-value=1e-12 Score=90.44 Aligned_cols=125 Identities=21% Similarity=0.242 Sum_probs=91.8
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-CC-CCccE
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PN-PDWDL 81 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~fD~ 81 (175)
...++.+++|+|||||+.++.++... ..+|+++|-+++++ +..++|.+..+. +++.+.-++.... .+ .+||.
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~-~~~~~N~~~fg~----~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEAL-ELIERNAARFGV----DNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHH-HHHHHHHHHhCC----CcEEEEeccchHhhcCCCCCCE
Confidence 45678999999999999999998543 67899999999997 888999988775 4454444443332 11 27999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCC-
Q 030565 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGL- 160 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~- 160 (175)
|+....- .+..+++.+...|+|||++++.... .++.....+.+++.|+
T Consensus 106 iFIGGg~-------~i~~ile~~~~~l~~ggrlV~nait------------------------lE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 106 IFIGGGG-------NIEEILEAAWERLKPGGRLVANAIT------------------------LETLAKALEALEQLGGR 154 (187)
T ss_pred EEECCCC-------CHHHHHHHHHHHcCcCCeEEEEeec------------------------HHHHHHHHHHHHHcCCc
Confidence 9987552 3449999999999999999984111 2234566777888888
Q ss_pred eeEEe
Q 030565 161 EVKHL 165 (175)
Q Consensus 161 ~~~~~ 165 (175)
++..+
T Consensus 155 ei~~v 159 (187)
T COG2242 155 EIVQV 159 (187)
T ss_pred eEEEE
Confidence 55444
No 97
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.50 E-value=1.1e-13 Score=102.91 Aligned_cols=96 Identities=17% Similarity=0.202 Sum_probs=68.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC----CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~----~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
++.+|||+|||+|.++..+++.. +.+|+|+|+|+.++ +.++++. ..+.....+. ..+++.+++||+|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l-~~A~~~~------~~~~~~~~d~-~~lp~~~~sfD~I~ 156 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAI-KYAAKRY------PQVTFCVASS-HRLPFADQSLDAII 156 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHH-HHHHHhC------CCCeEEEeec-ccCCCcCCceeEEE
Confidence 45779999999999999887753 24699999999998 5544331 1122233222 34567788999999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030565 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
+... + ..++++.|+|||||.+++..+..
T Consensus 157 ~~~~----~------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 157 RIYA----P------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred EecC----C------CCHHHHHhhccCCCEEEEEeCCC
Confidence 8533 1 34578999999999999875443
No 98
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.50 E-value=7.9e-13 Score=102.06 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=86.4
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
++.+|||+|||+|.+++.+++.. +.+|+++|+|+.++ +.+++|...++. ++..+..++.+......++||+|+++.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~AL-e~AreNa~~~g~--rV~fi~gDl~e~~l~~~~~FDLIVSNP 327 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPAL-ETARKNAADLGA--RVEFAHGSWFDTDMPSEGKWDIIVSNP 327 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCC--cEEEEEcchhccccccCCCccEEEECC
Confidence 45789999999999999988753 67899999999998 788888876554 344444444322111235799999987
Q ss_pred cccCccc-----------------------chHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccC
Q 030565 87 ILLYVKQ-----------------------YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRI 143 (175)
Q Consensus 87 ~l~~~~~-----------------------~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (175)
.. .... .+....+++++.+.|+|||.+++.+..
T Consensus 328 PY-I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~----------------------- 383 (423)
T PRK14966 328 PY-IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF----------------------- 383 (423)
T ss_pred CC-CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-----------------------
Confidence 53 2110 012346777778899999976663111
Q ss_pred CCcchhHHHHHHHHcCCeeEE
Q 030565 144 GKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 144 ~~~~~~~~~~~~~~~g~~~~~ 164 (175)
...+...+++++.||...+
T Consensus 384 --~Q~e~V~~ll~~~Gf~~v~ 402 (423)
T PRK14966 384 --DQGAAVRGVLAENGFSGVE 402 (423)
T ss_pred --cHHHHHHHHHHHCCCcEEE
Confidence 1136777888888886433
No 99
>PLN03075 nicotianamine synthase; Provisional
Probab=99.50 E-value=3.8e-13 Score=99.74 Aligned_cols=107 Identities=15% Similarity=0.132 Sum_probs=75.9
Q ss_pred CCCcEEEeCCCccHHH-HHHHH-hC-CCcEEEEeCChHHHHHHHHHHHhh-CCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030565 8 ERRRCIELGSGTGALA-IFLRK-AM-NLDITTSDYNDQEIEDNIAYNSTT-NGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~-~~l~~-~~-~~~v~~~D~s~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
++++|+|||||.|-++ +.+++ .. +.+++++|+++.++ +.+++.... .++..++.+...+..+..+ ..+.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai-~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-~l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSAN-DVARRLVSSDPDLSKRMFFHTADVMDVTE-SLKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHhhhccCccCCcEEEECchhhccc-ccCCcCEEE
Confidence 6789999999987554 44443 22 56799999999998 666666643 5554555665555444321 246899999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030565 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+. ++.++ +.++..++++++.+.|+|||.+++..
T Consensus 201 ~~-ALi~~-dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 201 LA-ALVGM-DKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred Ee-ccccc-ccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99 55233 23456699999999999999888864
No 100
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.50 E-value=2.4e-13 Score=96.42 Aligned_cols=103 Identities=15% Similarity=0.166 Sum_probs=71.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||+|||+|.++..+++.. +.+|+++|+|+.++ +.++++....+. .++..+..+..+.++.....+|.++.
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~-~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~d~v~~ 115 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVV-NLIRRNCDRFGV-KNVEVIEGSAPECLAQLAPAPDRVCI 115 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCC-CCeEEEECchHHHHhhCCCCCCEEEE
Confidence 3467899999999999999987653 57899999999998 788888776655 22333322222212222234566554
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.. ...+..+++++.+.|+|||++++.
T Consensus 116 ~~-------~~~~~~~l~~~~~~LkpgG~li~~ 141 (196)
T PRK07402 116 EG-------GRPIKEILQAVWQYLKPGGRLVAT 141 (196)
T ss_pred EC-------CcCHHHHHHHHHHhcCCCeEEEEE
Confidence 21 123458999999999999988885
No 101
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.49 E-value=3.5e-13 Score=97.13 Aligned_cols=147 Identities=14% Similarity=0.179 Sum_probs=95.4
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
...++||||+|.|..+..++.. -.+|++++.|+.|. ..+++ .+. ..+. .++....+.+||+|.|-++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr-~rL~~----kg~----~vl~---~~~w~~~~~~fDvIscLNv 160 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMR-WRLSK----KGF----TVLD---IDDWQQTDFKFDVISCLNV 160 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHH-HHHHh----CCC----eEEe---hhhhhccCCceEEEeehhh
Confidence 4578999999999999999776 66799999999995 44432 223 1111 0112223458999999999
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeeccccC-CCCC-CCC-CCCCCc-eEeeeeccCCCcchhHHHHHHHHcCCeeE
Q 030565 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN-EQGE-GTE-GLPWPA-FLMSWRRRIGKEDETIFFTSCENAGLEVK 163 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~-~~~~-~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (175)
+ ..-..+..+++++++.|+|+|++++++.-. .... ..- ....|. .+......+.. -...|.+.++.+||+++
T Consensus 161 L---DRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~-~v~~l~~v~~p~GF~v~ 236 (265)
T PF05219_consen 161 L---DRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEE-QVSSLVNVFEPAGFEVE 236 (265)
T ss_pred h---hccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHH-HHHHHHHHHHhcCCEEE
Confidence 9 444456699999999999999999983222 1111 111 011111 12111122222 23566688999999999
Q ss_pred EecceEEE
Q 030565 164 HLGSRVYC 171 (175)
Q Consensus 164 ~~~~~~~~ 171 (175)
..+.-.|+
T Consensus 237 ~~tr~PYL 244 (265)
T PF05219_consen 237 RWTRLPYL 244 (265)
T ss_pred EEeccCcc
Confidence 99877664
No 102
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.49 E-value=1.1e-12 Score=104.91 Aligned_cols=106 Identities=19% Similarity=0.275 Sum_probs=75.5
Q ss_pred CCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030565 9 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
+.+|||+|||+|.+++.+++.. +.+|+++|+|+.++ +.++.|...++...++..+..++.+. ...++||+|+++..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al-~~A~~N~~~~~l~~~v~~~~~D~~~~--~~~~~fDlIvsNPP 215 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAI-EVAKSNAIKYEVTDRIQIIHSNWFEN--IEKQKFDFIVSNPP 215 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHH-HHHHHHHHHcCCccceeeeecchhhh--CcCCCccEEEECCC
Confidence 4689999999999999988764 67899999999998 88888887776644444444443322 23458999999654
Q ss_pred ccC--------------cc---------cchHHHHHHHHHHhhcCCCCceeec
Q 030565 88 LLY--------------VK---------QYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 88 l~~--------------~~---------~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..- .+ .......+++++.+.|+|||.+++.
T Consensus 216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 211 00 0112355778888999999988773
No 103
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.47 E-value=2.2e-12 Score=95.95 Aligned_cols=126 Identities=18% Similarity=0.294 Sum_probs=85.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++.+|||+|||+|.++..+++.. ..+|+++|+|+.++ +.++.+.. ......+..+..++.+. ..+++||+|+++
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l-~~a~~n~~-~~~~~~i~~~~~d~~~~--~~~~~fD~Iv~n 182 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEAL-AVARRNAK-HGLGARVEFLQGDWFEP--LPGGRFDLIVSN 182 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHH-hCCCCcEEEEEccccCc--CCCCceeEEEEC
Confidence 356789999999999999998875 47899999999998 77777766 22222334444443222 224689999997
Q ss_pred CcccCcc-----------------------cchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeecc
Q 030565 86 DILLYVK-----------------------QYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRR 142 (175)
Q Consensus 86 ~~l~~~~-----------------------~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (175)
..+.... .......+++++.+.|+|||.+++.+. +
T Consensus 183 pPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g----------------------~ 240 (275)
T PRK09328 183 PPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG----------------------Y 240 (275)
T ss_pred CCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC----------------------c
Confidence 5431100 112345788888899999998877310 0
Q ss_pred CCCcchhHHHHHHHHcCCe
Q 030565 143 IGKEDETIFFTSCENAGLE 161 (175)
Q Consensus 143 ~~~~~~~~~~~~~~~~g~~ 161 (175)
. ....+.+.+++.||.
T Consensus 241 ~---~~~~~~~~l~~~gf~ 256 (275)
T PRK09328 241 D---QGEAVRALLAAAGFA 256 (275)
T ss_pred h---HHHHHHHHHHhCCCc
Confidence 1 125677888889986
No 104
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.47 E-value=1.1e-13 Score=98.21 Aligned_cols=99 Identities=11% Similarity=0.110 Sum_probs=70.1
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCC--CCCccEEEeCCc
Q 030565 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP--NPDWDLILASDI 87 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~fD~i~~~~~ 87 (175)
+.++|+|||+|..++.++.. ..+|+|+|+|+.|| +.+++....... .....+.-.+..++. +++.|+|++..+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL-~~a~k~~~~~y~---~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAML-KVAKKHPPVTYC---HTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHH-HHhhcCCCcccc---cCCccccccccccccCCCcceeeehhhhh
Confidence 37999999999777777776 77899999999998 555443322211 111112222223333 789999999999
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+ ||.+.+ +++++++|+||+.|-++.+
T Consensus 110 ~-HWFdle---~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 110 V-HWFDLE---RFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred H-HhhchH---HHHHHHHHHcCCCCCEEEE
Confidence 8 888777 9999999999988844433
No 105
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.45 E-value=1.4e-12 Score=97.48 Aligned_cols=105 Identities=16% Similarity=0.263 Sum_probs=76.8
Q ss_pred CcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030565 10 RRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
.+|||+|||+|.+++.+++.. +.+|+++|+|+.++ +.+++|...++...++..+..++.+. +..++||+|+++...
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al-~~a~~n~~~~~~~~~v~~~~~d~~~~--~~~~~fDlIvsNPPy 192 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDAL-AVAEENAEKNQLEHRVEFIQSNLFEP--LAGQKIDIIVSNPPY 192 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECchhcc--CcCCCccEEEECCCC
Confidence 689999999999999998875 46899999999998 88888888777643345555444332 233489999997332
Q ss_pred -------------cCccc---------chHHHHHHHHHHhhcCCCCceeec
Q 030565 89 -------------LYVKQ---------YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 89 -------------~~~~~---------~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+.+. ......+++++.+.|+|||.+++.
T Consensus 193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 11110 124567889999999999988774
No 106
>PHA03411 putative methyltransferase; Provisional
Probab=99.45 E-value=2.4e-12 Score=94.29 Aligned_cols=127 Identities=13% Similarity=0.117 Sum_probs=82.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-CCCCccEEEeC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLILAS 85 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~i~~~ 85 (175)
.+++|||+|||+|.+++.++++. +.+|+++|+|+.++ +.++++.. .+.+..++...+ .+.+||+|+++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al-~~Ar~n~~---------~v~~v~~D~~e~~~~~kFDlIIsN 133 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFA-RIGKRLLP---------EAEWITSDVFEFESNEKFDVVISN 133 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHhCc---------CCEEEECchhhhcccCCCcEEEEc
Confidence 35789999999999999887764 57899999999998 55554421 122233333332 24589999999
Q ss_pred CcccCcccchH------------------HHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcc
Q 030565 86 DILLYVKQYSN------------------LIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKED 147 (175)
Q Consensus 86 ~~l~~~~~~~~------------------~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (175)
..+++.. ..+ +.+.+......|+|+|.+++. +.. .+.+. . ..+
T Consensus 134 PPF~~l~-~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~-yss----------~~~y~----~---sl~ 194 (279)
T PHA03411 134 PPFGKIN-TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA-YSG----------RPYYD----G---TMK 194 (279)
T ss_pred CCccccC-chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE-Eec----------ccccc----c---cCC
Confidence 9875432 221 235556666778888865553 111 11111 1 224
Q ss_pred hhHHHHHHHHcCCeeE
Q 030565 148 ETIFFTSCENAGLEVK 163 (175)
Q Consensus 148 ~~~~~~~~~~~g~~~~ 163 (175)
.+++.++++++||...
T Consensus 195 ~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 195 SNKYLKWSKQTGLVTY 210 (279)
T ss_pred HHHHHHHHHhcCcEec
Confidence 5889999999999743
No 107
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.45 E-value=1.5e-12 Score=81.88 Aligned_cols=103 Identities=21% Similarity=0.248 Sum_probs=72.8
Q ss_pred cEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcccC
Q 030565 11 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLY 90 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~ 90 (175)
+++|+|||+|..+..+++....+++++|+++..+ ..+++....... ..+..+..+..+......++||+|++..++.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVAL-ELARKAAAALLA-DNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHhcccc-cceEEEEcChhhhccccCCceEEEEEccceee
Confidence 5899999999999998874477899999999887 555432222222 23334433333322224568999999998843
Q ss_pred cccchHHHHHHHHHHhhcCCCCceeec
Q 030565 91 VKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 91 ~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. .+....+++.+.+.++|+|.+++.
T Consensus 79 ~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 2 446669999999999999988774
No 108
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.44 E-value=1.2e-12 Score=93.53 Aligned_cols=99 Identities=10% Similarity=0.123 Sum_probs=67.8
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-------CCCC
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-------PIPN 76 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 76 (175)
..++.+|||||||+|.++..+++..+ ..|+|+|+++ |. . . ..+..+..+..+.. ++.+
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-~----------~-~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-P----------I-VGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-C----------C-CCcEEEecCCCChHHHHHHHHHhCC
Confidence 35678999999999999999988753 5799999988 31 0 1 12233444433321 2446
Q ss_pred CCccEEEeCCcccCcccc--h------HHHHHHHHHHhhcCCCCceeec
Q 030565 77 PDWDLILASDILLYVKQY--S------NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~--~------~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++||+|++..+.+..... + ....+++++.++|+|||.+++.
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 789999997655332211 0 1247899999999999988884
No 109
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.44 E-value=2e-12 Score=92.79 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=71.2
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-C-CCCCccEEE
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-I-PNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~fD~i~ 83 (175)
..++.+|||+|||+|..+..+++. ..+|+++|+++.++ +.++++....+.. .+.+..++... . ..++||+|+
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~-~~a~~~~~~~~~~----~v~~~~~d~~~~~~~~~~fD~I~ 149 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQ-WEAKRRLKQLGLH----NVSVRHGDGWKGWPAYAPFDRIL 149 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHH-HHHHHHHHHCCCC----ceEEEECCcccCCCcCCCcCEEE
Confidence 446789999999999999988776 45899999999997 6777777665552 23333332221 1 236899999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030565 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
+...+ . .+.+.+.+.|+|||++++...
T Consensus 150 ~~~~~---~------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 150 VTAAA---P------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EccCc---h------hhhHHHHHhcCCCcEEEEEEc
Confidence 98665 2 223567889999999888654
No 110
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.44 E-value=4.1e-13 Score=100.14 Aligned_cols=112 Identities=20% Similarity=0.213 Sum_probs=82.7
Q ss_pred CCccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccE
Q 030565 2 HHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDL 81 (175)
Q Consensus 2 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 81 (175)
.|..+++++.|||+|||||.+++..|+.++.+|+|+|.|.-+ +.+......|+....+..+.....+ ..++.++.|+
T Consensus 54 ~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia--~~a~~iv~~N~~~~ii~vi~gkvEd-i~LP~eKVDi 130 (346)
T KOG1499|consen 54 QNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA--DFARKIVKDNGLEDVITVIKGKVED-IELPVEKVDI 130 (346)
T ss_pred cchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH--HHHHHHHHhcCccceEEEeecceEE-EecCccceeE
Confidence 466788999999999999999999999988889999998843 6677777788886555555444433 2444689999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030565 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
|++-++=|+......+..++-.-=+.|+|||.++=
T Consensus 131 IvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 131 IVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred EeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 99988765544333334455555579999995543
No 111
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.1e-12 Score=90.70 Aligned_cols=100 Identities=20% Similarity=0.257 Sum_probs=79.1
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-C-CCCCccEE
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-I-PNPDWDLI 82 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~fD~i 82 (175)
...++.+|||||||+|..+..+++. ..+|+.+|..+... +.++++....+. .++...++|... + +...||.|
T Consensus 69 ~~~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~-~~A~~~L~~lg~----~nV~v~~gDG~~G~~~~aPyD~I 142 (209)
T COG2518 69 ELKPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELA-EQARRNLETLGY----ENVTVRHGDGSKGWPEEAPYDRI 142 (209)
T ss_pred CCCCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHH-HHHHHHHHHcCC----CceEEEECCcccCCCCCCCcCEE
Confidence 4567899999999999999999887 55999999999876 888888888777 446666666554 3 34689999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
+.+... ...+ +.+.+.|+|||++++-+.
T Consensus 143 ~Vtaaa---~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 143 IVTAAA---PEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEeecc---CCCC------HHHHHhcccCCEEEEEEc
Confidence 998877 4444 457788999999988644
No 112
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.42 E-value=2e-12 Score=99.25 Aligned_cols=107 Identities=15% Similarity=0.087 Sum_probs=76.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC-CCCCCCCccEEEeC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPIPNPDWDLILAS 85 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fD~i~~~ 85 (175)
.+..+||||||+|.++..+|+.. ...++|+|+++.++ +.+.++....++ .++..+..+.... ..++++++|.|+++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i-~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSI-EQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHH-HHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEEEEe
Confidence 35689999999999999999875 56899999999998 666666666665 2233333332211 13567899999987
Q ss_pred CcccCcccch----HHHHHHHHHHhhcCCCCceeec
Q 030565 86 DILLYVKQYS----NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~----~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
... -|.... ....+++++.|+|+|||.+.+.
T Consensus 200 FPd-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 200 FPV-PWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred CCC-CccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 543 121111 1148899999999999999997
No 113
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.41 E-value=1.5e-12 Score=91.66 Aligned_cols=100 Identities=12% Similarity=0.164 Sum_probs=66.7
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-------CCC
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-------PIP 75 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 75 (175)
...++.+|||+|||+|.++..+++.. ..+|+++|+|+.+ .. ..+..+..+..+.. ...
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~----~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PI----ENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cC----CCceEEEeeCCChhHHHHHHHHhC
Confidence 44678999999999999999887764 3469999999843 01 11233333332211 134
Q ss_pred CCCccEEEeCCccc--------CcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 76 NPDWDLILASDILL--------YVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~--------~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.++||+|++..+.. +....+.+..+++.+.++|+|||++++.
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 56899999854321 1111123468999999999999988884
No 114
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=3e-12 Score=95.19 Aligned_cols=100 Identities=20% Similarity=0.265 Sum_probs=73.6
Q ss_pred cEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCccc
Q 030565 11 RCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILL 89 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (175)
+|||+|||||..++.+++... .+|+|+|+|+.++ +.+++|...+++ .++..+..+|.+. ..++||+|++|...
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al-~~A~~Na~~~~l-~~~~~~~~dlf~~---~~~~fDlIVsNPPY- 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDAL-ALARENAERNGL-VRVLVVQSDLFEP---LRGKFDLIVSNPPY- 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHH-HHHHHHHHHcCC-ccEEEEeeecccc---cCCceeEEEeCCCC-
Confidence 799999999999999999863 4899999999998 899999999887 3333333333333 33489999998653
Q ss_pred Cccc-----------------------chHHHHHHHHHHhhcCCCCceee
Q 030565 90 YVKQ-----------------------YSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 90 ~~~~-----------------------~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
-... .+....++.++.+.|+|||.+++
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l 236 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL 236 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE
Confidence 2221 11245677778888999886666
No 115
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.41 E-value=8.4e-13 Score=109.42 Aligned_cols=110 Identities=13% Similarity=0.081 Sum_probs=80.3
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC-CCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++++|||+|||+|.+++.+++.++.+|+++|+|+.++ +.+++|...++.. .++..+..+..+.+....++||+|++.
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al-~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYL-EWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 46899999999999999999987555799999999998 8999999998874 344444444322222124689999996
Q ss_pred CcccCc--------ccchHHHHHHHHHHhhcCCCCceeec
Q 030565 86 DILLYV--------KQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~--------~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...+-. ....+...++..+.++|+|||.+++.
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 543111 11224557888899999999988774
No 116
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.39 E-value=6.6e-12 Score=98.81 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=78.0
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEE
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~ 83 (175)
..+|.+|||+|||+|..+..+++... .+|+++|+++.++ +.++++....+.. +..+..+..+... ...++||.|+
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l-~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~Vl 318 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRL-ERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDRIL 318 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHH-HHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCEEE
Confidence 34688999999999999999988753 5899999999998 7888888877662 2233322222112 2346899999
Q ss_pred eCCcccCc------------ccc-------hHHHHHHHHHHhhcCCCCceeecccc
Q 030565 84 ASDILLYV------------KQY-------SNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 84 ~~~~l~~~------------~~~-------~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
+....... ... ..+.+++..+.+.|+|||++++++..
T Consensus 319 ~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 319 LDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred ECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 64432110 001 12357899999999999999987543
No 117
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.38 E-value=5.7e-12 Score=97.85 Aligned_cols=110 Identities=14% Similarity=0.152 Sum_probs=77.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC-CCcceeeccCCCCCC---CCCCCccE
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAFP---IPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~fD~ 81 (175)
..++++|||+|||+|.+++.++.....+|+++|+|+.++ +.+++|...+++. .++..+..+..+.+. ...++||+
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al-~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEAL-DIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 346889999999999999887766455899999999998 8889999998873 234444433322221 12458999
Q ss_pred EEeCCcccCcccch-------HHHHHHHHHHhhcCCCCceeec
Q 030565 82 ILASDILLYVKQYS-------NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~-------~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|++.... +..... ....++....++|+|||.++..
T Consensus 297 VilDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 297 IVMDPPK-FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred EEECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 9987664 333221 2345556778999999977764
No 118
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=4e-13 Score=89.69 Aligned_cols=138 Identities=20% Similarity=0.274 Sum_probs=95.1
Q ss_pred CCCccccCCCcEEEeCCC-ccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCC--CcceeeccC-CCCCCCC
Q 030565 1 MHHREWIERRRCIELGSG-TGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITP--ALPHIKHSW-GDAFPIP 75 (175)
Q Consensus 1 ~~~~~~~~~~~vLDlGcG-~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~ 75 (175)
++++....|++|||+|.| +|..++.+|... ...|+.+|-+...+ ++.++....|.... .+..+...+ +......
T Consensus 22 l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~sv-rnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~e 100 (201)
T KOG3201|consen 22 LRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESV-RNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQE 100 (201)
T ss_pred HhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHH-HHHHHHHhcccccccceehhhHHHHhhhHHHHh
Confidence 356777789999999999 577777766543 56799999999997 77776666653321 222223332 2333334
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHH
Q 030565 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSC 155 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (175)
-.+||+|++++++|+.+..+ .+++.+.+.|+|.|.-.+. +.+|.. +...|.+.+
T Consensus 101 q~tFDiIlaADClFfdE~h~---sLvdtIk~lL~p~g~Al~f--------------------sPRRg~---sL~kF~de~ 154 (201)
T KOG3201|consen 101 QHTFDIILAADCLFFDEHHE---SLVDTIKSLLRPSGRALLF--------------------SPRRGQ---SLQKFLDEV 154 (201)
T ss_pred hCcccEEEeccchhHHHHHH---HHHHHHHHHhCcccceeEe--------------------cCcccc---hHHHHHHHH
Confidence 45899999999997777665 7778888889999964442 222222 348888888
Q ss_pred HHcCCeeEEe
Q 030565 156 ENAGLEVKHL 165 (175)
Q Consensus 156 ~~~g~~~~~~ 165 (175)
+..||.+...
T Consensus 155 ~~~gf~v~l~ 164 (201)
T KOG3201|consen 155 GTVGFTVCLE 164 (201)
T ss_pred HhceeEEEec
Confidence 9999877644
No 119
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.37 E-value=1.1e-11 Score=93.33 Aligned_cols=152 Identities=12% Similarity=0.098 Sum_probs=90.5
Q ss_pred CCCcEEEeCCCccHHHHHHHHh-CCCcEEEEeCChHHHHHHHHHHHhhC-CCCCCcceeec-cCCCCCC---CCCCCccE
Q 030565 8 ERRRCIELGSGTGALAIFLRKA-MNLDITTSDYNDQEIEDNIAYNSTTN-GITPALPHIKH-SWGDAFP---IPNPDWDL 81 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~~D~s~~~l~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~---~~~~~fD~ 81 (175)
.+.++||||||+|.+...++.. .+.+++|+|+++.++ +.+++|...+ ++..++..... +..+... ...+.||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al-~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQAL-ASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHH-HHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 4688999999999877766554 377899999999998 8999999998 67554444321 1111111 23568999
Q ss_pred EEeCCcccCcccchHHH---HHHHHH----------------HhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeecc
Q 030565 82 ILASDILLYVKQYSNLI---KSLSVL----------------LKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRR 142 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~---~~l~~l----------------~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (175)
|+|+..+| ....+... +-.+.+ .+++.+||.+.+......... .+ .....|.......
T Consensus 193 ivcNPPf~-~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~-~~-~~~~gwftsmv~k 269 (321)
T PRK11727 193 TLCNPPFH-ASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESK-AF-AKQVLWFTSLVSK 269 (321)
T ss_pred EEeCCCCc-CcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHH-HH-HhhCcEEEEEeec
Confidence 99999974 33222111 111122 233446776666533332221 11 1122344443333
Q ss_pred CCCcchhHHHHHHHHcCCeeEEe
Q 030565 143 IGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 143 ~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
.. +.+.+.+.+++.|..-..+
T Consensus 270 k~--~l~~l~~~L~~~~~~~~~~ 290 (321)
T PRK11727 270 KE--NLPPLYRALKKVGAVEVKT 290 (321)
T ss_pred cC--CHHHHHHHHHHcCCceEEE
Confidence 32 3688999999999854443
No 120
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.36 E-value=1.2e-11 Score=97.86 Aligned_cols=113 Identities=11% Similarity=0.050 Sum_probs=77.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..++.+|||+|||+|..+..+++.. ..+|+++|+++.++ +.++++....+.. .+..+..+..+..+...++||+|+
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l-~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~~fD~Vl 325 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKL-KLIEENAKRLGLT-NIETKALDARKVHEKFAEKFDKIL 325 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-eEEEEeCCcccccchhcccCCEEE
Confidence 3467899999999999999998865 46899999999998 7888888877762 233333332222211236899999
Q ss_pred eCCcccCcc------c------ch-------HHHHHHHHHHhhcCCCCceeecccc
Q 030565 84 ASDILLYVK------Q------YS-------NLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 84 ~~~~l~~~~------~------~~-------~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
+........ + .. ....+++++.+.|||||++++++..
T Consensus 326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 754321110 0 01 1246899999999999999876433
No 121
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.36 E-value=9.3e-12 Score=97.92 Aligned_cols=115 Identities=10% Similarity=0.029 Sum_probs=79.2
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..+|.+|||+|||+|..+..++... +.+|+++|+++.++ +.++.+....+.. .+..+..+..+......++||.|+
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl-~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl 312 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKI-QLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRIL 312 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEEE
Confidence 3467899999999999999998865 46899999999998 7888888776662 222332222211113356899999
Q ss_pred eCCcccCc---ccc----------------hHHHHHHHHHHhhcCCCCceeeccccCC
Q 030565 84 ASDILLYV---KQY----------------SNLIKSLSVLLKSYKPKDSQVGHLTKNE 122 (175)
Q Consensus 84 ~~~~l~~~---~~~----------------~~~~~~l~~l~~~l~pgG~~~~~~~~~~ 122 (175)
+....... ... ..+.+++.++.+.|+|||.+++++....
T Consensus 313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 73322111 100 1346789999999999999998865543
No 122
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.36 E-value=5.7e-12 Score=89.16 Aligned_cols=108 Identities=11% Similarity=0.084 Sum_probs=74.0
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.+++.++.+...+|+++|+++..+ +.+++|.+.++.. ++..+..++.+.++....+||+|++..
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~-~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DP 129 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVA-QQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDP 129 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECC
Confidence 45789999999999999976566567899999999997 7888888877652 333333333222222234799999987
Q ss_pred cccCcccchHHHHHHHHHHh--hcCCCCceeecccc
Q 030565 87 ILLYVKQYSNLIKSLSVLLK--SYKPKDSQVGHLTK 120 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~--~l~pgG~~~~~~~~ 120 (175)
.+ .....+ .+++.+.. .++|++.+++.+..
T Consensus 130 Py-~~g~~~---~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 130 PF-RKGLLE---ETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CC-CCChHH---HHHHHHHHCCCcCCCcEEEEEecC
Confidence 74 333223 45555544 37888887776544
No 123
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.35 E-value=9.9e-12 Score=89.19 Aligned_cols=110 Identities=21% Similarity=0.233 Sum_probs=76.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCC-------CcceeeccCCCCCCCCC--
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-------ALPHIKHSWGDAFPIPN-- 76 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-- 76 (175)
..++.+||..|||.|.....||+. |.+|+|+|+|+..++...+++........ ....+.+..+|.+....
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 345679999999999999999987 88999999999988444343332111110 11233444556555332
Q ss_pred -CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 77 -PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 77 -~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++||+|+=..++ +....+...+..+.+.++|+|||++++.
T Consensus 114 ~g~fD~iyDr~~l-~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 114 VGKFDLIYDRTFL-CALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp HHSEEEEEECSST-TTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred cCCceEEEEeccc-ccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 379999998887 4445778889999999999999994443
No 124
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=8.3e-11 Score=80.94 Aligned_cols=132 Identities=15% Similarity=0.155 Sum_probs=84.3
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..+.|++|+|+|||||++++..+-.+...|+|+|++++++ +.++.|... ....+..+. . +.......||.+++
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~-ei~r~N~~~--l~g~v~f~~---~-dv~~~~~~~dtvim 114 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEAL-EIARANAEE--LLGDVEFVV---A-DVSDFRGKFDTVIM 114 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHH-HHHHHHHHh--hCCceEEEE---c-chhhcCCccceEEE
Confidence 4568899999999999999999887668899999999998 788878776 222333332 2 23334567899999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
+..+--+-...+ ..++..+.+..+ .+.+ .+ ... +.+...+..+..|+++..
T Consensus 115 NPPFG~~~rhaD-r~Fl~~Ale~s~----vVYs------------------iH----~a~--~~~f~~~~~~~~G~~v~~ 165 (198)
T COG2263 115 NPPFGSQRRHAD-RPFLLKALEISD----VVYS------------------IH----KAG--SRDFVEKFAADLGGTVTH 165 (198)
T ss_pred CCCCccccccCC-HHHHHHHHHhhh----eEEE------------------ee----ccc--cHHHHHHHHHhcCCeEEE
Confidence 877633322222 345555554431 1111 11 000 235555667888888777
Q ss_pred ecceEEEE
Q 030565 165 LGSRVYCI 172 (175)
Q Consensus 165 ~~~~~~~i 172 (175)
...-.|+|
T Consensus 166 ~~~~~~~i 173 (198)
T COG2263 166 IERARFPI 173 (198)
T ss_pred EEEEEEec
Confidence 76655554
No 125
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.35 E-value=9.4e-12 Score=94.04 Aligned_cols=100 Identities=14% Similarity=0.127 Sum_probs=69.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCC--cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNL--DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~--~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..++.+|||+|||+|.++..+++..+. .|+++|+++.++ +.++++....+. ..+..+..+..+. ....++||+|+
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l-~~Ar~~l~~~g~-~nV~~i~gD~~~~-~~~~~~fD~Ii 154 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC-EIAKRNVRRLGI-ENVIFVCGDGYYG-VPEFAPYDVIF 154 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHHHHcCC-CcEEEEeCChhhc-ccccCCccEEE
Confidence 446789999999999999999887543 599999999998 777777776665 2233332221111 12235799999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+...+ . .....+.+.|+|||++++.
T Consensus 155 ~~~g~---~------~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 155 VTVGV---D------EVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred ECCch---H------HhHHHHHHhcCCCCEEEEE
Confidence 87554 2 2224567889999998875
No 126
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.34 E-value=6.3e-12 Score=91.35 Aligned_cols=104 Identities=18% Similarity=0.171 Sum_probs=76.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-----CCCCCc
Q 030565 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-----IPNPDW 79 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~f 79 (175)
.++++|||+|||+|..++.++... +.+|+++|++++++ +.++.+....+...++..+..+..+.++ ...++|
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~-~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAY-EVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 467899999999999888887754 46899999999997 8888898888875444444333322221 124689
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|+.-.- .+.....+..+.+.++|||.+++-
T Consensus 146 D~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 146 DFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 99987421 344558899999999999977763
No 127
>PRK04457 spermidine synthase; Provisional
Probab=99.34 E-value=6.2e-12 Score=92.84 Aligned_cols=107 Identities=14% Similarity=0.085 Sum_probs=71.5
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
++++|||||||+|.++..+++.. +.+|+++|+++.++ +.++++........++..+..+..+.++...++||+|++.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi-~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D- 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVI-AVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD- 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe-
Confidence 46789999999999999987765 56899999999998 6766665443221222222222111122234689999974
Q ss_pred cccCcccch---HHHHHHHHHHhhcCCCCceeec
Q 030565 87 ILLYVKQYS---NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~---~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+ .....+ ....+++++.+.|+|||++++.
T Consensus 144 ~~-~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 144 GF-DGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CC-CCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 21 211111 1248999999999999999885
No 128
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.34 E-value=9.2e-12 Score=88.49 Aligned_cols=111 Identities=16% Similarity=0.235 Sum_probs=75.1
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCC-CCCcc--------------------
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGI-TPALP-------------------- 62 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~-~~~~~-------------------- 62 (175)
++..++.+|||||.+|.+++.+|+.+++. |.|+||++..| +.+.++++...- ...+.
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI-~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLI-QRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHH-HHHHHhccccccccccccCCCccccccccccccccccc
Confidence 46678999999999999999999988655 99999999887 555555433211 00000
Q ss_pred -----------------eeeccCCCCCCCCCCCccEEEeCCcccCccc----chHHHHHHHHHHhhcCCCCceeec
Q 030565 63 -----------------HIKHSWGDAFPIPNPDWDLILASDILLYVKQ----YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 63 -----------------~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~----~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+..+...+.+......||+|+|-.+. .|-+ .+-+..+++++++.|.|||.+++-
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiT-kWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSIT-KWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEee-eeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00000011122345689999986553 3222 356899999999999999988884
No 129
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.34 E-value=3.9e-12 Score=87.63 Aligned_cols=106 Identities=22% Similarity=0.347 Sum_probs=79.0
Q ss_pred CCCccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCcc
Q 030565 1 MHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWD 80 (175)
Q Consensus 1 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 80 (175)
.+||+...|++|||+|+|+|..++..++.+...|++.|+.|... .++..|...|+.. +.+-..+... .+..||
T Consensus 72 ~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-~ai~lNa~angv~-----i~~~~~d~~g-~~~~~D 144 (218)
T COG3897 72 DDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-QAIRLNAAANGVS-----ILFTHADLIG-SPPAFD 144 (218)
T ss_pred hcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-HHhhcchhhccce-----eEEeeccccC-CCccee
Confidence 36899999999999999999999999999888899999998875 8889898888862 2222223333 667899
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030565 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
++++.+++|...... +++.-..++...|-.+++
T Consensus 145 l~LagDlfy~~~~a~---~l~~~~~~l~~~g~~vlv 177 (218)
T COG3897 145 LLLAGDLFYNHTEAD---RLIPWKDRLAEAGAAVLV 177 (218)
T ss_pred EEEeeceecCchHHH---HHHHHHHHHHhCCCEEEE
Confidence 999999996555333 777744444444443433
No 130
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.33 E-value=1.6e-11 Score=97.16 Aligned_cols=101 Identities=16% Similarity=0.231 Sum_probs=72.2
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCCCCCccEEE
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~i~ 83 (175)
.++.+|||+|||+|.+++.+++. +.+|+|+|+|+.|+ +.+++|...++. ..+..+..++.+.+ ++.+++||+|+
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al-~~A~~n~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMV-ERARENARRNGL-DNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHH-HHHHHHHHHcCC-CceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 45789999999999999999887 57899999999998 788888887776 23444444443222 23456899999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+...- . .+...++.+.+ ++|++.+|++
T Consensus 373 ~dPPr---~---g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 373 LDPPR---A---GAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred ECcCC---c---ChHHHHHHHHh-cCCCeEEEEE
Confidence 86553 1 12255655555 6888877775
No 131
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.33 E-value=6.1e-12 Score=88.74 Aligned_cols=144 Identities=14% Similarity=0.103 Sum_probs=86.4
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCccee-eccCCCCCCCCCCCccEEEeCC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI-KHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
...+.||.|||.|+.+..+......+|..+|+.+.-+ +.++........ .+..+ .... ++....+++||+|++-+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl-~~a~~~l~~~~~--~v~~~~~~gL-Q~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFL-EQAKEYLGKDNP--RVGEFYCVGL-QDFTPEEGKYDLIWIQW 130 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHH-HHHHHHTCCGGC--CEEEEEES-G-GG----TT-EEEEEEES
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHH-HHHHHHhcccCC--CcceEEecCH-hhccCCCCcEeEEEehH
Confidence 4578999999999999877665577899999999887 555544332111 11111 1111 23333456999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
++-|.. .+++..+|++....|+|+|.+++-..........+-...+.+ ..+...|.+++++||+++...
T Consensus 131 ~lghLT-D~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSv---------TRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 131 CLGHLT-DEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSV---------TRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp -GGGS--HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEE---------EEEHHHHHHHHHHCT-EEEEE
T ss_pred hhccCC-HHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCee---------ecCHHHHHHHHHHcCCEEEEe
Confidence 996655 678999999999999999977775333221111111111111 113488999999999997664
No 132
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.33 E-value=5.8e-12 Score=85.91 Aligned_cols=105 Identities=21% Similarity=0.306 Sum_probs=70.5
Q ss_pred cEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc-
Q 030565 11 RCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL- 88 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l- 88 (175)
+|||||||+|.+...|++.. ....+|+|+|+.++ +.++...+..+....+.+.+.+..+. .+..++||+|+--..+
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV-~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAV-ELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHH-HHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCcee
Confidence 89999999999999999975 33499999999997 55555555555543355555444433 4566788888753322
Q ss_pred --cCccc--chHHHHHHHHHHhhcCCCCceeec
Q 030565 89 --LYVKQ--YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 89 --~~~~~--~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
--.++ ...+.-.+..+.+.|+|||+|+|+
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvIt 180 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVIT 180 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEE
Confidence 11111 112234566777888999988886
No 133
>PLN02672 methionine S-methyltransferase
Probab=99.32 E-value=3.7e-11 Score=102.30 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=76.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCC---------------CCcceeeccCCCC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGIT---------------PALPHIKHSWGDA 71 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 71 (175)
++.+|||+|||+|.+++.+++.. ..+|+|+|+|+.++ +.+++|...++.. .++..+.-++.+.
T Consensus 118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al-~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~ 196 (1082)
T PLN02672 118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAV-KVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY 196 (1082)
T ss_pred CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCcccccccccccccccccccEEEEECchhhh
Confidence 46789999999999999998875 46899999999998 8888888876432 1233444444333
Q ss_pred CCCCCCCccEEEeCCcccCccc------------------------------------chHHHHHHHHHHhhcCCCCcee
Q 030565 72 FPIPNPDWDLILASDILLYVKQ------------------------------------YSNLIKSLSVLLKSYKPKDSQV 115 (175)
Q Consensus 72 ~~~~~~~fD~i~~~~~l~~~~~------------------------------------~~~~~~~l~~l~~~l~pgG~~~ 115 (175)
.+.....||+|+++-.. -... ..-..+++++..+.|+|||.++
T Consensus 197 ~~~~~~~fDlIVSNPPY-I~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~ 275 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQ-ILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI 275 (1082)
T ss_pred ccccCCceEEEEECCCc-CCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 32112369999997542 1000 0112567778888999999888
Q ss_pred ecccc
Q 030565 116 GHLTK 120 (175)
Q Consensus 116 ~~~~~ 120 (175)
+-+..
T Consensus 276 lEiG~ 280 (1082)
T PLN02672 276 FNMGG 280 (1082)
T ss_pred EEECc
Confidence 75433
No 134
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.32 E-value=2.1e-11 Score=95.98 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=78.6
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC--CC--CCCCcc
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF--PI--PNPDWD 80 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~fD 80 (175)
..+|.+|||+|||+|..+..+++..+ .+|+++|+++.++ +.++++....+.. + .+....++.. +. ..++||
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l-~~~~~n~~r~g~~--~-~v~~~~~d~~~~~~~~~~~~fD 311 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRL-KRVYENLKRLGLT--I-KAETKDGDGRGPSQWAENEQFD 311 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHHHHHcCCC--e-EEEEeccccccccccccccccC
Confidence 34678999999999999999988653 6899999999998 7788888877763 1 1222223322 21 356899
Q ss_pred EEEeCC------cccCcccc-------------hHHHHHHHHHHhhcCCCCceeeccccC
Q 030565 81 LILASD------ILLYVKQY-------------SNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 81 ~i~~~~------~l~~~~~~-------------~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
.|++.. ++...++. ..+..++.++.+.|||||++++++...
T Consensus 312 ~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 312 RILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred EEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999632 22111110 124689999999999999999985554
No 135
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.32 E-value=2.1e-12 Score=92.02 Aligned_cols=102 Identities=19% Similarity=0.303 Sum_probs=72.1
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCCC--cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-C-CCCCc
Q 030565 4 REWIERRRCIELGSGTGALAIFLRKAMNL--DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-I-PNPDW 79 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~--~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~f 79 (175)
....+|.+|||||||+|..+..++...+. .|+++|+++..+ +.+++++...+. .++.+..++... . ....|
T Consensus 68 L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~-~~A~~~l~~~~~----~nv~~~~gdg~~g~~~~apf 142 (209)
T PF01135_consen 68 LDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELA-ERARRNLARLGI----DNVEVVVGDGSEGWPEEAPF 142 (209)
T ss_dssp TTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHH-HHHHHHHHHHTT----HSEEEEES-GGGTTGGG-SE
T ss_pred HhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHH-HHHHHHHHHhcc----CceeEEEcchhhccccCCCc
Confidence 34668999999999999999999887654 599999999887 777888887666 344444444322 1 24589
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030565 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
|.|+++... ...+ ..+.+.|++||++++-..
T Consensus 143 D~I~v~~a~---~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 143 DRIIVTAAV---PEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEEESSBB---SS--------HHHHHTEEEEEEEEEEES
T ss_pred CEEEEeecc---chHH------HHHHHhcCCCcEEEEEEc
Confidence 999999877 3333 457888999999988643
No 136
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.32 E-value=2.5e-11 Score=89.87 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=77.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC--CCCCCCCCccEE
Q 030565 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--AFPIPNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fD~i 82 (175)
.+|.+|||+|||+|..+..+++.. ...|+++|+++.++ +.++++....+.. .+.....+ ..+...+.||.|
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l-~~~~~n~~~~g~~----~v~~~~~D~~~~~~~~~~fD~V 144 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRT-KVLIANINRCGVL----NVAVTNFDGRVFGAAVPKFDAI 144 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHH-HHHHHHHHHcCCC----cEEEecCCHHHhhhhccCCCEE
Confidence 467899999999999999988865 34799999999998 7888888877662 22222222 222234569999
Q ss_pred EeCCcccC------ccc------c-------hHHHHHHHHHHhhcCCCCceeeccccCC
Q 030565 83 LASDILLY------VKQ------Y-------SNLIKSLSVLLKSYKPKDSQVGHLTKNE 122 (175)
Q Consensus 83 ~~~~~l~~------~~~------~-------~~~~~~l~~l~~~l~pgG~~~~~~~~~~ 122 (175)
++...... .++ . ..+.++++.+.+.+||||++++++....
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 97433211 000 0 1235699999999999999988854443
No 137
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.31 E-value=3e-11 Score=95.64 Aligned_cols=112 Identities=22% Similarity=0.187 Sum_probs=77.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-CCCCccEE
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~i 82 (175)
..+|.+|||+|||+|..+..+++.. +.+|+++|+|+.++ +.++++....+. ..+.+..++.... .+++||+|
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l-~~~~~~~~~~g~----~~v~~~~~Da~~~~~~~~fD~V 322 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKL-EKIRSHASALGI----TIIETIEGDARSFSPEEQPDAI 322 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHhCC----CeEEEEeCcccccccCCCCCEE
Confidence 3467899999999999998887754 35899999999998 777778777666 2233333332222 34589999
Q ss_pred EeCC------cccCcc------cch-------HHHHHHHHHHhhcCCCCceeeccccCC
Q 030565 83 LASD------ILLYVK------QYS-------NLIKSLSVLLKSYKPKDSQVGHLTKNE 122 (175)
Q Consensus 83 ~~~~------~l~~~~------~~~-------~~~~~l~~l~~~l~pgG~~~~~~~~~~ 122 (175)
++-. ++...+ ... .+..++.++.+.|+|||++++.+....
T Consensus 323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 9621 111110 011 234689999999999999999865553
No 138
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.31 E-value=2.5e-11 Score=95.76 Aligned_cols=114 Identities=14% Similarity=0.093 Sum_probs=78.3
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCCCCCcc
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWD 80 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD 80 (175)
..+|.+|||+|||+|..+..+++.. ..+|+++|+++.++ +.++++....+.. .+..+..+..+.. +...++||
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl-~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRL-KKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHH-HHHHHHHHHcCCC-eEEEEeCChhhcccccccccccCC
Confidence 3467899999999999999998865 34799999999998 7888888887762 2233322222111 12346899
Q ss_pred EEEeCC------cccCcccc-------------hHHHHHHHHHHhhcCCCCceeeccccC
Q 030565 81 LILASD------ILLYVKQY-------------SNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 81 ~i~~~~------~l~~~~~~-------------~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
.|++.. ++...++. ..+.+++.++.+.|||||++++++...
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 999732 22111110 114688999999999999988774443
No 139
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.30 E-value=4.1e-11 Score=86.08 Aligned_cols=111 Identities=10% Similarity=0.129 Sum_probs=78.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhC-----CC--CCCcceeeccCCCCCCCC-----
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN-----GI--TPALPHIKHSWGDAFPIP----- 75 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~----- 75 (175)
++.+||..|||.|.....||.. |.+|+|+|+|+..++...+++.... +. ......+.+..+|.+...
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 4689999999999999999887 8899999999999844333221100 00 001123444455555432
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030565 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
.+.||+|+-..++... ..+...+..+.+.++|+|||.+++....
T Consensus 122 ~~~fD~VyDra~~~Al-pp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 122 LPVFDIWYDRGAYIAL-PNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cCCcCeeeeehhHhcC-CHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 2579999998887444 4677889999999999999988887543
No 140
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=99.28 E-value=1.3e-11 Score=88.85 Aligned_cols=143 Identities=11% Similarity=0.065 Sum_probs=80.0
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceee-ccCCCCCCCCCCCccEEEeC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK-HSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++++|||+|||||.++..+++.+..+|+|+|+++.|+...++.+.+.... ...++. ..|.+.. ..-..+|+++++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~--~~~ni~~~~~~~~~-~d~~~~DvsfiS 150 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVL--ERTNIRYVTPADIF-PDFATFDVSFIS 150 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEe--ecCCcccCCHhHcC-CCceeeeEEEee
Confidence 578899999999999999999985667999999998874434433221000 111222 2332222 122367777665
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
.. .++..+.+.|+| |.+++..-++.+...+.....+...-.-.+ ......+...+.+.||++..+
T Consensus 151 ~~-----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 215 (228)
T TIGR00478 151 LI-----------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAI---ALALHKVIDKGESPDFQEKKI 215 (228)
T ss_pred hH-----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHH---HHHHHHHHHHHHcCCCeEeeE
Confidence 33 346678888899 766655322221111110111111000000 112367777788889987766
Q ss_pred cc
Q 030565 166 GS 167 (175)
Q Consensus 166 ~~ 167 (175)
..
T Consensus 216 ~~ 217 (228)
T TIGR00478 216 IF 217 (228)
T ss_pred EE
Confidence 43
No 141
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.28 E-value=4.2e-11 Score=90.83 Aligned_cols=101 Identities=12% Similarity=0.083 Sum_probs=68.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
++.+|||+|||+|.+++.+++. +.+|+|+|+++.++ +.++++...++. .++..+..+..+......+.||+|++...
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av-~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAI-ACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHH-HHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 5689999999999999999886 68999999999998 788888888776 33344433332222212357999998754
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
- . .... .+++ +...++|++.+|++
T Consensus 250 r-~-G~~~---~~~~-~l~~~~~~~ivyvs 273 (315)
T PRK03522 250 R-R-GIGK---ELCD-YLSQMAPRFILYSS 273 (315)
T ss_pred C-C-CccH---HHHH-HHHHcCCCeEEEEE
Confidence 2 1 1111 3333 33446777766665
No 142
>PRK00811 spermidine synthase; Provisional
Probab=99.27 E-value=3.4e-11 Score=89.90 Aligned_cols=108 Identities=13% Similarity=0.093 Sum_probs=71.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCC-CCcceeeccCCCCC---CCCCCCccEE
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAF---PIPNPDWDLI 82 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~fD~i 82 (175)
++++||+||||+|..+..+++.. ..+|+++|+++.++ +.+++........ ..-+.+.+..+|.. +...++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv-~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVV-EVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHH-HHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 46899999999999999988864 46799999999998 6666655432110 01123333333332 2245689999
Q ss_pred EeCCcccCcccchH--HHHHHHHHHhhcCCCCceeec
Q 030565 83 LASDILLYVKQYSN--LIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~--~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++...--..+ ... -..+++.+.+.|+|||.+++.
T Consensus 155 i~D~~dp~~~-~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGP-AEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCc-hhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9853211111 111 247788999999999988875
No 143
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.27 E-value=7e-11 Score=85.49 Aligned_cols=116 Identities=17% Similarity=0.268 Sum_probs=82.7
Q ss_pred CccccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeecc----CCCCCCCCCC
Q 030565 3 HREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS----WGDAFPIPNP 77 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 77 (175)
+....++..+||+|||+|..++.+++.. .+.|+|+|.|+.++ ..+..|.+...+...+..+... +-+..+..++
T Consensus 143 ~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai-~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~ 221 (328)
T KOG2904|consen 143 NSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAI-KLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEG 221 (328)
T ss_pred hhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHH-HHHHHHHHHHhhcCceEEEecccccccccccccccC
Confidence 4456677789999999999999988865 56699999999987 7777777777776666666443 3344456678
Q ss_pred CccEEEeCCcccCcccc-----------------------hHHHHHHHHHHhhcCCCCceeeccc
Q 030565 78 DWDLILASDILLYVKQY-----------------------SNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~-----------------------~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
++|+++++...-...+. ..+..++.-+.|.|+|||.+.+...
T Consensus 222 ~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 222 KIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 99999998663222211 1234455567789999997777543
No 144
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1e-10 Score=84.14 Aligned_cols=105 Identities=21% Similarity=0.259 Sum_probs=80.0
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCcc
Q 030565 4 REWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWD 80 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD 80 (175)
.++.+|++|+|.|.|+|.++.+|+...+ .+|+.+|+.++.. +.+.+|....++... +.+..+|... ...+.||
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~-k~A~~Nl~~~~l~d~---v~~~~~Dv~~~~~~~~vD 165 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFA-KTARENLSEFGLGDR---VTLKLGDVREGIDEEDVD 165 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHH-HHHHHHHHHhccccc---eEEEeccccccccccccC
Confidence 4677899999999999999999987554 4799999999887 888888888766433 3333444333 2233899
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030565 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
.|+. +.+++..+++.+.+.|+|||.+++..+.
T Consensus 166 av~L--------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 166 AVFL--------DLPDPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred EEEE--------cCCChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 9886 3445669999999999999988885443
No 145
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.24 E-value=2.6e-11 Score=91.96 Aligned_cols=113 Identities=15% Similarity=0.111 Sum_probs=70.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCC-C-------CCcceeeccCC-----CCCCC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI-T-------PALPHIKHSWG-----DAFPI 74 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~-~-------~~~~~~~~~~~-----~~~~~ 74 (175)
++.+|||||||-|....-.....-..++|+|++...|+++..|..+.... . -....+..+.. +.++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 67899999999988777776665677999999999986555544221111 0 01111222111 11222
Q ss_pred CCCCccEEEeCCcccCcccchH-HHHHHHHHHhhcCCCCceeecccc
Q 030565 75 PNPDWDLILASDILLYVKQYSN-LIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 75 ~~~~fD~i~~~~~l~~~~~~~~-~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
...+||+|-+-.++++....+. ...+|+.+...|+|||.|+.++++
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 2359999999888877766654 455999999999999999998433
No 146
>PHA03412 putative methyltransferase; Provisional
Probab=99.24 E-value=2.3e-10 Score=82.16 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=64.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC----CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-CCCCccEE
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLI 82 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~----~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~i 82 (175)
.+.+|||+|||+|.+++.+++.. ..+|+++|+++.++ +.++++.. .+..+ +.+.... .+++||+|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al-~~Ar~n~~------~~~~~---~~D~~~~~~~~~FDlI 118 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYY-KLGKRIVP------EATWI---NADALTTEFDTLFDMA 118 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHH-HHHHhhcc------CCEEE---EcchhcccccCCccEE
Confidence 46799999999999999988752 45799999999997 66665532 12222 2332221 24689999
Q ss_pred EeCCcccCcc---------cchHHHHHHHHHHhhcCCCC
Q 030565 83 LASDILLYVK---------QYSNLIKSLSVLLKSYKPKD 112 (175)
Q Consensus 83 ~~~~~l~~~~---------~~~~~~~~l~~l~~~l~pgG 112 (175)
+++..++-.. .......+++...+++++|+
T Consensus 119 IsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~ 157 (241)
T PHA03412 119 ISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT 157 (241)
T ss_pred EECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE
Confidence 9998864211 01224568888888666665
No 147
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.23 E-value=1.2e-10 Score=84.79 Aligned_cols=137 Identities=14% Similarity=0.208 Sum_probs=92.8
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC-CCC-CCCCCc
Q 030565 4 REWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AFP-IPNPDW 79 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~f 79 (175)
.++.+|++|||-|.|+|.++..+++..+ .+|+..|+.++.. +.+++|....++...+....-++.. .++ ..+..+
T Consensus 36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~-~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~ 114 (247)
T PF08704_consen 36 LDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRA-EKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDF 114 (247)
T ss_dssp TT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSE
T ss_pred cCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHH-HHHHHHHHHcCCCCCceeEecceecccccccccCcc
Confidence 4677899999999999999999998664 4799999999987 8888899998885555555555532 221 224689
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhc-CCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHc
Q 030565 80 DLILASDILLYVKQYSNLIKSLSVLLKSY-KPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENA 158 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l-~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (175)
|.|+. +.+++..++..+.+.| +|||++++..++.+ . .....+.+++.
T Consensus 115 DavfL--------Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie--------------Q----------v~~~~~~L~~~ 162 (247)
T PF08704_consen 115 DAVFL--------DLPDPWEAIPHAKRALKKPGGRICCFSPCIE--------------Q----------VQKTVEALREH 162 (247)
T ss_dssp EEEEE--------ESSSGGGGHHHHHHHE-EEEEEEEEEESSHH--------------H----------HHHHHHHHHHT
T ss_pred cEEEE--------eCCCHHHHHHHHHHHHhcCCceEEEECCCHH--------------H----------HHHHHHHHHHC
Confidence 99876 2334448999999999 89998887533321 0 24556677888
Q ss_pred CCe---eEEecceEEEEe
Q 030565 159 GLE---VKHLGSRVYCIK 173 (175)
Q Consensus 159 g~~---~~~~~~~~~~i~ 173 (175)
||. +.++..|.|-+.
T Consensus 163 gf~~i~~~Evl~R~~~v~ 180 (247)
T PF08704_consen 163 GFTDIETVEVLLREWEVR 180 (247)
T ss_dssp TEEEEEEEEEEEEEEEEE
T ss_pred CCeeeEEEEEEeeEEEEE
Confidence 885 444555666554
No 148
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.23 E-value=9.7e-11 Score=87.14 Aligned_cols=112 Identities=13% Similarity=0.196 Sum_probs=85.6
Q ss_pred CCCccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCcc
Q 030565 1 MHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWD 80 (175)
Q Consensus 1 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 80 (175)
|.+...++++.|||+|||+|.++.+.++.++.+|++++-|. |. +++++-+..|++..++..+.....+ ++ .+++.|
T Consensus 170 l~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MA-qyA~~Lv~~N~~~~rItVI~GKiEd-ie-LPEk~D 245 (517)
T KOG1500|consen 170 LENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MA-QYARKLVASNNLADRITVIPGKIED-IE-LPEKVD 245 (517)
T ss_pred HhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HH-HHHHHHHhcCCccceEEEccCcccc-cc-Cchhcc
Confidence 34566788999999999999999999999888999999887 64 8888888888887777666555533 22 246889
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+||+-.+=|... .+.+.+..-...+.|+|.|..+=+
T Consensus 246 viISEPMG~mL~-NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 246 VIISEPMGYMLV-NERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred EEEeccchhhhh-hHHHHHHHHHHHhhcCCCCcccCc
Confidence 999976653333 455555555677999999977665
No 149
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.22 E-value=8.2e-11 Score=83.35 Aligned_cols=142 Identities=15% Similarity=0.101 Sum_probs=96.2
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC----CCCCCCccEE
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF----PIPNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~fD~i 82 (175)
.+|.+|||...|-|..++..+++++.+|+.++.++..+ +.++.|....++... .+..-.++.. .+.+.+||+|
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VL-eLa~lNPwSr~l~~~--~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVL-ELAKLNPWSRELFEI--AIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeE-EeeccCCCCcccccc--ccEEecccHHHHHhcCCccccceE
Confidence 36899999999999999999898666999999999998 676767666555322 3444445432 3678899999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCee
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEV 162 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (175)
+--..=+.....---.++.+|++|+|+|||+++--+... .++..+.+.++...+.++++||++
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~P-----------------g~ryrG~d~~~gVa~RLr~vGF~~ 272 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNP-----------------GKRYRGLDLPKGVAERLRRVGFEV 272 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCC-----------------CcccccCChhHHHHHHHHhcCcee
Confidence 863322111111112478899999999999877632221 112222333588889999999995
Q ss_pred EEecce
Q 030565 163 KHLGSR 168 (175)
Q Consensus 163 ~~~~~~ 168 (175)
...-.+
T Consensus 273 v~~~~~ 278 (287)
T COG2521 273 VKKVRE 278 (287)
T ss_pred eeeehh
Confidence 544333
No 150
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.22 E-value=1.2e-10 Score=80.71 Aligned_cols=101 Identities=15% Similarity=0.098 Sum_probs=65.1
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
+..++.+|||+|||+|.++..+++. +.+|+++|+++.++ +.++++... . .++..+..+.. ..++.+.+||.|++
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~-~~~~~~~~~--~-~~v~ii~~D~~-~~~~~~~~~d~vi~ 83 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLA-PRLREKFAA--A-DNLTVIHGDAL-KFDLPKLQPYKVVG 83 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHH-HHHHHHhcc--C-CCEEEEECchh-cCCccccCCCEEEE
Confidence 3456789999999999999999887 78999999999997 666666532 1 12233322222 22334446999998
Q ss_pred CCcccCcccchHHHHHHHHHHhh--cCCCCceeec
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKS--YKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~--l~pgG~~~~~ 117 (175)
+-.+ +.. . ..+.++.+. +.++|.+++.
T Consensus 84 n~Py-~~~-~----~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 84 NLPY-NIS-T----PILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred CCCc-ccH-H----HHHHHHHhcCCCcceEEEEEE
Confidence 7654 432 2 344444432 3366666554
No 151
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.22 E-value=1.2e-10 Score=86.17 Aligned_cols=115 Identities=16% Similarity=0.169 Sum_probs=79.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCC----CcceeeccC-----CCCCCCCCC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP----ALPHIKHSW-----GDAFPIPNP 77 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~----~~~~~~~~~-----~~~~~~~~~ 77 (175)
.+++.++|||||-|...+-.-+.+-.+++++||++-.++++-++.....+... ...++..+. .+.+++.+.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 35778999999999988887777566899999999887555444333322211 122333332 123344555
Q ss_pred CccEEEeCCcccCccc-chHHHHHHHHHHhhcCCCCceeeccccC
Q 030565 78 DWDLILASDILLYVKQ-YSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~-~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
+||+|-+-.++++... .+....++..+.++|+|||.|+-++|+.
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 6999998777765444 4567789999999999999888876554
No 152
>PRK03612 spermidine synthase; Provisional
Probab=99.22 E-value=5.5e-11 Score=95.64 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=70.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCC---CCcceeeccCCCCC---CCCCCCcc
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGIT---PALPHIKHSWGDAF---PIPNPDWD 80 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~fD 80 (175)
++++|||||||+|..+..+++... .+|+++|++++++ +.++++....... -.-+.+.+..+|.. ...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi-~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMT-ELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHH-HHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 568999999999999999888644 6899999999998 6666532211110 01123333333322 22346899
Q ss_pred EEEeCCcccCcccch--HHHHHHHHHHhhcCCCCceeec
Q 030565 81 LILASDILLYVKQYS--NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~--~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|++...-...+... .-.++++.+.+.|+|||.+++.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 999963321101000 0136888999999999988874
No 153
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.20 E-value=1e-10 Score=86.91 Aligned_cols=108 Identities=15% Similarity=0.128 Sum_probs=70.5
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---CCCCCccEEE
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---IPNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~fD~i~ 83 (175)
.+++||+||||+|..+..+++.. ..+|+++|+++.++ +.+++...........+.+.+..++... ...++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi-~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVI-ELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHH-HHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 45799999999999998887765 46799999999997 6666554332110111222222233221 2246899999
Q ss_pred eCCcccCcccchH--HHHHHHHHHhhcCCCCceeec
Q 030565 84 ASDILLYVKQYSN--LIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~--~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+...- ....... ...+++.+.+.|+|||.+++.
T Consensus 151 ~D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 86442 1111111 347889999999999988886
No 154
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.19 E-value=9e-11 Score=82.63 Aligned_cols=108 Identities=11% Similarity=-0.006 Sum_probs=71.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-C-CCC-CccEEE
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-I-PNP-DWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~-~fD~i~ 83 (175)
.+++++||++||+|.+++.++++++.+|+++|.++.++ +.+++|...++...++..+..+..+.+. . ... .||+|+
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~-~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKAN-QTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 46899999999999999999998666899999999997 7888888887764334444333322221 1 122 366666
Q ss_pred eCCcccCcccchHHHHHHHHHHh--hcCCCCceeeccc
Q 030565 84 ASDILLYVKQYSNLIKSLSVLLK--SYKPKDSQVGHLT 119 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~--~l~pgG~~~~~~~ 119 (175)
.-..+ .... ...+++.+.. .++++|.+++...
T Consensus 127 ~DPPy-~~~~---~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 127 LDPPF-FNGA---LQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred ECcCC-CCCc---HHHHHHHHHHCCCCCCCeEEEEEec
Confidence 65443 3222 2355554443 6888886666433
No 155
>PRK01581 speE spermidine synthase; Validated
Probab=99.17 E-value=3.2e-10 Score=86.25 Aligned_cols=108 Identities=17% Similarity=0.098 Sum_probs=68.8
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhh---CCCCCCcceeeccCCCCC---CCCCCCc
Q 030565 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTT---NGITPALPHIKHSWGDAF---PIPNPDW 79 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~f 79 (175)
...++||+||||+|.....+++.. ..+|+++|+++.++ +.++..... +...-.-+.+.+..+|.. +...++|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVI-elAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMI-NMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHH-HHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 356899999999999988887764 36899999999998 565532111 000001233344444332 2345689
Q ss_pred cEEEeCCcccCccc--ch--HHHHHHHHHHhhcCCCCceeec
Q 030565 80 DLILASDILLYVKQ--YS--NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~--~~--~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|++... .... .. .-..+++.+.+.|+|||.+++.
T Consensus 228 DVIIvDl~--DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 228 DVIIIDFP--DPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred cEEEEcCC--CccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99998621 1100 00 1146889999999999987774
No 156
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.17 E-value=5.5e-11 Score=81.63 Aligned_cols=81 Identities=11% Similarity=0.128 Sum_probs=55.8
Q ss_pred EEEeCChHHHHHHHHHHHhhCC--CCCCcceeeccCCCCCCCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCC
Q 030565 35 TTSDYNDQEIEDNIAYNSTTNG--ITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKD 112 (175)
Q Consensus 35 ~~~D~s~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG 112 (175)
+|+|+|++|+ +.++++..... ...++..+..+. ..+++.+++||+|++..++.++. +...++++++|+|||||
T Consensus 1 ~GvD~S~~ML-~~A~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~v~~~~~l~~~~---d~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 1 MGLDFSSEQL-AVAATRQSLKARSCYKCIEWIEGDA-IDLPFDDCEFDAVTMGYGLRNVV---DRLRAMKEMYRVLKPGS 75 (160)
T ss_pred CeEcCCHHHH-HHHHHhhhcccccCCCceEEEEech-hhCCCCCCCeeEEEecchhhcCC---CHHHHHHHHHHHcCcCe
Confidence 4899999999 55543333211 111233333322 35677788999999999885554 55699999999999999
Q ss_pred ceeecccc
Q 030565 113 SQVGHLTK 120 (175)
Q Consensus 113 ~~~~~~~~ 120 (175)
.+++....
T Consensus 76 ~l~i~d~~ 83 (160)
T PLN02232 76 RVSILDFN 83 (160)
T ss_pred EEEEEECC
Confidence 99887444
No 157
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.17 E-value=1.6e-10 Score=89.51 Aligned_cols=102 Identities=13% Similarity=0.061 Sum_probs=70.2
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.+++.++.. +.+|+++|+++.++ +.+++|...++.. ++..+..+..+......++||+|++..
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av-~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DP 308 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAI-ACAQQSAQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNP 308 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECC
Confidence 35678999999999999999876 68899999999998 8888888887762 333333333222221224699999876
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.- . . ....+++.+. .++|++.+|+.
T Consensus 309 Pr-~-G---~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 309 PR-R-G---IGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CC-C-C---CcHHHHHHHH-hcCCCeEEEEE
Confidence 53 1 1 1125555554 36888877775
No 158
>PLN02476 O-methyltransferase
Probab=99.15 E-value=2.3e-10 Score=84.54 Aligned_cols=104 Identities=12% Similarity=0.159 Sum_probs=77.0
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-----CCCCCc
Q 030565 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-----IPNPDW 79 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~f 79 (175)
.+.++|||||+++|..++.++... +.+|+++|.+++.. +.++++.+..+...++..+..+..+.++ ...++|
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~-~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSL-EVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 467899999999999999998854 34699999999987 8888899888885444443332222221 123589
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|+.-. +..+-...++.+.+.|+|||.+++-
T Consensus 196 D~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 196 DFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 9998752 2445668899999999999987763
No 159
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.15 E-value=2.2e-10 Score=83.77 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=73.3
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
++.+.++|+|||+|+|.++..+++.. +.+++..|. |.++ +.++. ..++..+..+..+.+ +. +|+++
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~-~~~~~-------~~rv~~~~gd~f~~~---P~-~D~~~ 163 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVI-EQAKE-------ADRVEFVPGDFFDPL---PV-ADVYL 163 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHH-CCHHH-------TTTEEEEES-TTTCC---SS-ESEEE
T ss_pred cccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhh-hcccc-------ccccccccccHHhhh---cc-cccee
Confidence 34455789999999999999988865 678999999 4455 44443 234455554444222 23 99999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCC--Cceeecccc
Q 030565 84 ASDILLYVKQYSNLIKSLSVLLKSYKPK--DSQVGHLTK 120 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pg--G~~~~~~~~ 120 (175)
..++++.|. .++-..+|+++++.|+|| |++++...-
T Consensus 164 l~~vLh~~~-d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 164 LRHVLHDWS-DEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp EESSGGGS--HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred eehhhhhcc-hHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 999995555 678899999999999999 999997433
No 160
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.13 E-value=3.8e-10 Score=80.40 Aligned_cols=104 Identities=16% Similarity=0.250 Sum_probs=80.7
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceee-ccCCCCCC-CCCCCccE
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK-HSWGDAFP-IPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~fD~ 81 (175)
..+.++|||||.+.|..++.||.... .+++.+|+++++. +.++++.+..+...++..+. .+..+.+. ...++||+
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~-~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERA-EIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHH-HHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 34678999999999999999988653 4699999999997 89999999988866555554 23333333 45689999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030565 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
|+.-. +..+-...++.+.+.|+|||.+++
T Consensus 136 iFIDa------dK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 136 VFIDA------DKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EEEeC------ChhhCHHHHHHHHHHhCCCcEEEE
Confidence 99842 234445899999999999997777
No 161
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.12 E-value=7.9e-10 Score=87.34 Aligned_cols=102 Identities=14% Similarity=0.178 Sum_probs=69.6
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCCCCCccEEE
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~i~ 83 (175)
.++.+|||+|||+|.+++.+++. +.+|+++|+++.++ +.+++|...++. .++..+..+..+.+ ...+++||+|+
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av-~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESV-EKAQQNAELNGI-ANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHH-HHHHHHHHHhCC-CceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 34678999999999999999886 67899999999998 888888887776 23334433332211 12345799999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+...- . ... ..+++.+.+ ++|++.+|++
T Consensus 368 ~dPPr-~-G~~---~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 368 LDPPR-K-GCA---AEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred ECcCC-C-CCC---HHHHHHHHh-cCCCEEEEEc
Confidence 75442 1 111 255665554 7888766664
No 162
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=3e-09 Score=72.70 Aligned_cols=130 Identities=14% Similarity=0.188 Sum_probs=83.3
Q ss_pred CCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 9 RRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
..-++|||||+|..+.++++..+ ..+.++|+||.++ +...+-...|.. .+..+.-+..+.+. .++.|+++.+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~--~~~~V~tdl~~~l~--~~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRV--HIDVVRTDLLSGLR--NESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCC--ccceeehhHHhhhc--cCCccEEEECC
Confidence 56699999999999999988764 4489999999997 555545555444 23444444444443 38899988875
Q ss_pred cccCcccc-------------------hHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcc
Q 030565 87 ILLYVKQY-------------------SNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKED 147 (175)
Q Consensus 87 ~l~~~~~~-------------------~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (175)
.+ -..+. +-+++++..+-..|.|.|.+|+..-. .- .
T Consensus 119 PY-Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~---------------------~N---~ 173 (209)
T KOG3191|consen 119 PY-VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR---------------------AN---K 173 (209)
T ss_pred Cc-CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh---------------------hc---C
Confidence 52 11111 11345555666777888877774111 11 1
Q ss_pred hhHHHHHHHHcCCeeEEecce
Q 030565 148 ETIFFTSCENAGLEVKHLGSR 168 (175)
Q Consensus 148 ~~~~~~~~~~~g~~~~~~~~~ 168 (175)
+++....++.-||.+....+|
T Consensus 174 p~ei~k~l~~~g~~~~~~~~R 194 (209)
T KOG3191|consen 174 PKEILKILEKKGYGVRIAMQR 194 (209)
T ss_pred HHHHHHHHhhcccceeEEEEE
Confidence 366667788888776655444
No 163
>PLN02366 spermidine synthase
Probab=99.11 E-value=8.9e-10 Score=82.96 Aligned_cols=109 Identities=13% Similarity=0.151 Sum_probs=71.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---C-CCCCCccE
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---P-IPNPDWDL 81 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~fD~ 81 (175)
.++++||+||||.|..+..+++... .+|+.+|+++.++ +.+++..........-+.+.+..+|.. . ...++||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi-~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVI-DVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHH-HHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 3578999999999999999988653 5799999999987 666665433211112234444445432 2 22568999
Q ss_pred EEeCCcccCcccch--HHHHHHHHHHhhcCCCCceeec
Q 030565 82 ILASDILLYVKQYS--NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~--~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|++-..- ...... --..+++.+.+.|+|||.++..
T Consensus 169 Ii~D~~d-p~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSD-PVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9984321 111011 1236889999999999988764
No 164
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.06 E-value=3.7e-10 Score=79.95 Aligned_cols=152 Identities=12% Similarity=0.026 Sum_probs=95.8
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeecc-CCCCCCCCCCCccEEEeCCc
Q 030565 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS-WGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~fD~i~~~~~ 87 (175)
...++||||+-|.+...+..+.-.+++.+|.|..|+ +.++. .+.+++ ....+. ..+.+++.++++|+|+++-.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~-~s~~~-~qdp~i----~~~~~v~DEE~Ldf~ens~DLiisSls 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMI-KSCRD-AQDPSI----ETSYFVGDEEFLDFKENSVDLIISSLS 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHH-HHhhc-cCCCce----EEEEEecchhcccccccchhhhhhhhh
Confidence 457999999999999999887666799999999998 44432 222222 111121 23456788999999999999
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeecc------ccCCCCC--CCCCCCCCceEeeeeccCCCcchhHHHHHHHHcC
Q 030565 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL------TKNEQGE--GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAG 159 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (175)
+++.-+.+ ..+.+....|||+|.|+.+. |+.+-.. .++. +...+.....+... ..+.-+++..||
T Consensus 147 lHW~NdLP---g~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelE-R~GGiSphiSPf~q---vrDiG~LL~rAG 219 (325)
T KOG2940|consen 147 LHWTNDLP---GSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELE-REGGISPHISPFTQ---VRDIGNLLTRAG 219 (325)
T ss_pred hhhhccCc---hHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHH-hccCCCCCcChhhh---hhhhhhHHhhcC
Confidence 84444444 89999999999999877762 2211111 1110 00000000001111 266778899999
Q ss_pred CeeEEecceEEEEe
Q 030565 160 LEVKHLGSRVYCIK 173 (175)
Q Consensus 160 ~~~~~~~~~~~~i~ 173 (175)
|....+...-+.|.
T Consensus 220 F~m~tvDtDEi~v~ 233 (325)
T KOG2940|consen 220 FSMLTVDTDEIVVG 233 (325)
T ss_pred cccceecccceeec
Confidence 98877766555543
No 165
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.05 E-value=9.9e-11 Score=81.88 Aligned_cols=108 Identities=18% Similarity=0.147 Sum_probs=72.0
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---CCCCCccEEE
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---IPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~fD~i~ 83 (175)
.+|+++||+-||||.+++++.++++.+|+.+|.++..+ ..+++|.+.-+...++..+..+....++ .....||+|+
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~-~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAI-KIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHH-HHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHH-HHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 68999999999999999999999788899999999987 8888888876663323333333211121 1356899999
Q ss_pred eCCcccCcccchHHHHHHHHHH--hhcCCCCceeecc
Q 030565 84 ASDILLYVKQYSNLIKSLSVLL--KSYKPKDSQVGHL 118 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~--~~l~pgG~~~~~~ 118 (175)
+-... ..... ...+++.+. ..|+++|.+++-+
T Consensus 120 lDPPY-~~~~~--~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 120 LDPPY-AKGLY--YEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp E--ST-TSCHH--HHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ECCCc-ccchH--HHHHHHHHHHCCCCCCCEEEEEEe
Confidence 97664 33321 347777777 6899999777754
No 166
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.04 E-value=1.5e-09 Score=83.72 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=80.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCC-CcceeeccCCCCC---CCCCCCccE
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-ALPHIKHSWGDAF---PIPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~fD~ 81 (175)
..+|++|||+=|-||.+|+++|..++.+||.+|.|...+ +.+++|...|+... ++..+..+.-+.+ .-...+||+
T Consensus 215 ~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al-~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 215 LAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRAL-EWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred hccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHH-HHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 345999999999999999999998566999999999998 99999999999832 2233332221111 123449999
Q ss_pred EEeCCcccC------cccchHHHHHHHHHHhhcCCCCceeec
Q 030565 82 ILASDILLY------VKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~------~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+.-..-|- +....+...++..+.++|+|||.+++.
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~ 335 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTS 335 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 998433210 111234568888999999999988886
No 167
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.04 E-value=3.5e-10 Score=80.39 Aligned_cols=104 Identities=18% Similarity=0.279 Sum_probs=75.6
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-----CCCCCc
Q 030565 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-----IPNPDW 79 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~f 79 (175)
...++||||||++|..++.+|... +.+|+.+|++++.. +.++++....+...++..+..+..+.++ ...++|
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~-~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERA-EIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHH-HHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHH-HHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 467899999999999999999865 56899999999987 8888888887774444444322222111 124589
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|+.-.- ..+-...++.+.+.|+|||.+++-
T Consensus 123 D~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 123 DFVFIDAD------KRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEEEEEST------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEccc------ccchhhHHHHHhhhccCCeEEEEc
Confidence 99998532 334457888899999999977773
No 168
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.02 E-value=8.1e-10 Score=78.07 Aligned_cols=98 Identities=13% Similarity=0.141 Sum_probs=68.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.+|.+|+|+.||.|.+++.+|+.. +..|+++|++|..+ +.+++|.+.|.....+..+..+..+..+ .+.||.|++.
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~-~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--~~~~drvim~ 176 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAV-EYLKENIRLNKVENRIEVINGDAREFLP--EGKFDRVIMN 176 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHH-HHHHHHHHHTT-TTTEEEEES-GGG-----TT-EEEEEE-
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHH-HHHHHHHHHcCCCCeEEEEcCCHHHhcC--ccccCEEEEC
Confidence 468899999999999999999833 67799999999998 9999999999886655555555433333 6799999997
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCce
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQ 114 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~ 114 (175)
..- ... ..+..+.+++++||.+
T Consensus 177 lp~----~~~---~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 177 LPE----SSL---EFLDAALSLLKEGGII 198 (200)
T ss_dssp -TS----SGG---GGHHHHHHHEEEEEEE
T ss_pred ChH----HHH---HHHHHHHHHhcCCcEE
Confidence 442 112 6777888999998854
No 169
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.98 E-value=2.9e-09 Score=82.48 Aligned_cols=100 Identities=15% Similarity=0.115 Sum_probs=71.5
Q ss_pred CCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030565 9 RRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
+.+|||++||+|..++.++...+ .+|+++|+++.++ +.+++|...|+... ......+....+.. .+.||+|++. .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av-~~a~~N~~~N~~~~-~~v~~~Da~~~l~~-~~~fD~V~lD-P 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAV-ELIKKNLELNGLEN-EKVFNKDANALLHE-ERKFDVVDID-P 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCc-eEEEhhhHHHHHhh-cCCCCEEEEC-C
Confidence 35899999999999999988654 4799999999998 88899998887731 11121111111111 3579999984 3
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030565 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
. .... .++....+.++++|.++++.
T Consensus 134 ~---Gs~~---~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 F---GSPA---PFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred C---CCcH---HHHHHHHHHhcCCCEEEEEe
Confidence 2 2222 77788778889999999983
No 170
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.97 E-value=8.9e-10 Score=77.26 Aligned_cols=112 Identities=14% Similarity=0.131 Sum_probs=67.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
++..|.|+|||.+.++..+.. ...|...|.-..- . ..+.-+. ...|.++++.|+++..-+
T Consensus 72 ~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva~n-------------~----~Vtacdi-a~vPL~~~svDv~VfcLS 131 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVAPN-------------P----RVTACDI-ANVPLEDESVDVAVFCLS 131 (219)
T ss_dssp TTS-EEEES-TT-HHHHH--S-----EEEEESS-SS-------------T----TEEES-T-TS-S--TT-EEEEEEES-
T ss_pred CCEEEEECCCchHHHHHhccc--CceEEEeeccCCC-------------C----CEEEecC-ccCcCCCCceeEEEEEhh
Confidence 457899999999999966532 4679999983311 0 0111111 456778899999888766
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030565 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
| .- .++...+.|+.|+|||||.+.|+.... ++. +.+.|.+.+++.||++..-
T Consensus 132 L-MG---Tn~~~fi~EA~RvLK~~G~L~IAEV~S--------------------Rf~--~~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 132 L-MG---TNWPDFIREANRVLKPGGILKIAEVKS--------------------RFE--NVKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp ---S---S-HHHHHHHHHHHEEEEEEEEEEEEGG--------------------G-S---HHHHHHHHHCTTEEEEEE
T ss_pred h-hC---CCcHHHHHHHHheeccCcEEEEEEecc--------------------cCc--CHHHHHHHHHHCCCeEEec
Confidence 6 22 356699999999999999888852211 111 3589999999999997764
No 171
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.94 E-value=2.5e-09 Score=80.17 Aligned_cols=82 Identities=16% Similarity=0.234 Sum_probs=59.0
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...++.+|||||||+|.++..+++. +.+|+++|+++.++ +.++++....+.. ..+.+..+|.+......||.|++
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li-~~l~~~~~~~~~~---~~v~ii~~Dal~~~~~~~d~Vva 107 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMV-AELKKRFQNSPLA---SKLEVIEGDALKTEFPYFDVCVA 107 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHH-HHHHHHHHhcCCC---CcEEEEECCHhhhcccccCEEEe
Confidence 3456789999999999999999887 77899999999998 7777766654432 23344444444444457899988
Q ss_pred CCcccCcc
Q 030565 85 SDILLYVK 92 (175)
Q Consensus 85 ~~~l~~~~ 92 (175)
+-.+ ++.
T Consensus 108 NlPY-~Is 114 (294)
T PTZ00338 108 NVPY-QIS 114 (294)
T ss_pred cCCc-ccC
Confidence 7553 444
No 172
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.94 E-value=2.9e-09 Score=78.66 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=55.0
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
+..++++|||+|||+|.++..+++. +.+|+++|+++.++ +.++.+... . +.+.+..++........||.|++
T Consensus 26 ~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~-~~l~~~~~~--~----~~v~ii~~D~~~~~~~~~d~Vv~ 97 (258)
T PRK14896 26 EDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLA-EFLRDDEIA--A----GNVEIIEGDALKVDLPEFNKVVS 97 (258)
T ss_pred CCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHH-HHHHHHhcc--C----CCEEEEEeccccCCchhceEEEE
Confidence 3456789999999999999999888 77899999999998 666655432 1 22333444444433346899999
Q ss_pred CCcc
Q 030565 85 SDIL 88 (175)
Q Consensus 85 ~~~l 88 (175)
+-.+
T Consensus 98 NlPy 101 (258)
T PRK14896 98 NLPY 101 (258)
T ss_pred cCCc
Confidence 8774
No 173
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.93 E-value=3.1e-09 Score=75.17 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=66.5
Q ss_pred cEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-----CCCCCccEEEe
Q 030565 11 RCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-----IPNPDWDLILA 84 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~fD~i~~ 84 (175)
.+||||||.|.+.+.+|+.. ...++|+|+....+. .+.+.....++ .++.+-.++... ++++++|-|..
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~-~a~~~~~~~~l----~Nv~~~~~da~~~l~~~~~~~~v~~i~i 94 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVA-KALRKAEKRGL----KNVRFLRGDARELLRRLFPPGSVDRIYI 94 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHH-HHHHHHHHHTT----SSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHH-HHHHHHHhhcc----cceEEEEccHHHHHhhcccCCchheEEE
Confidence 69999999999999998875 667999999999884 44444444444 344433333221 34678998887
Q ss_pred CCcccCcccch-----HHHHHHHHHHhhcCCCCceeecc
Q 030565 85 SDILLYVKQYS-----NLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 85 ~~~l~~~~~~~-----~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
...=-+.-... --...++.+.++|+|||.+.+.+
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 53321000000 12589999999999999998873
No 174
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.92 E-value=1e-08 Score=71.12 Aligned_cols=109 Identities=16% Similarity=0.097 Sum_probs=76.7
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCC--CccEEE
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP--DWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~fD~i~ 83 (175)
.+.|+++||+=+|+|.++++++++++..++.+|.+...+ ..+++|.+.-++......+..+....++.... .||+|+
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~-~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf 119 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAV-KILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVF 119 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHH-HHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence 468999999999999999999999888899999999987 88888888777544444444333322222222 599999
Q ss_pred eCCcccCcccchHHHHHHHH--HHhhcCCCCceeec
Q 030565 84 ASDILLYVKQYSNLIKSLSV--LLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~--l~~~l~pgG~~~~~ 117 (175)
.-..+ ... ..+....+.. -...|+|+|.+++-
T Consensus 120 lDPPy-~~~-l~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 120 LDPPY-AKG-LLDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred eCCCC-ccc-hhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 97764 422 2221233333 34679999977775
No 175
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.91 E-value=5e-09 Score=82.66 Aligned_cols=102 Identities=15% Similarity=0.208 Sum_probs=68.0
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-----CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-----~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
+++.|+|+|||+|.++...++.. ..+|+|++.|+.++ ..+++....++....+..+.-+..+- . .+.+.|+|
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~-~~l~~~v~~n~w~~~V~vi~~d~r~v-~-lpekvDII 262 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAV-VTLQKRVNANGWGDKVTVIHGDMREV-E-LPEKVDII 262 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHH-HHHHHHHHHTTTTTTEEEEES-TTTS-C-HSS-EEEE
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHH-HHHHHHHHhcCCCCeEEEEeCcccCC-C-CCCceeEE
Confidence 36789999999999998777764 36899999999876 56655556677766665555443322 1 13389999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCc
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDS 113 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~ 113 (175)
++-.+= ...+.+-+...+....|.|||+|.
T Consensus 263 VSElLG-sfg~nEl~pE~Lda~~rfLkp~Gi 292 (448)
T PF05185_consen 263 VSELLG-SFGDNELSPECLDAADRFLKPDGI 292 (448)
T ss_dssp EE---B-TTBTTTSHHHHHHHGGGGEEEEEE
T ss_pred EEeccC-CccccccCHHHHHHHHhhcCCCCE
Confidence 985442 334455566888888899999983
No 176
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.90 E-value=4.9e-09 Score=76.61 Aligned_cols=149 Identities=17% Similarity=0.234 Sum_probs=86.0
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC----------------C----------
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT----------------P---------- 59 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~----------------~---------- 59 (175)
..+|.++||||||+-.....-|.....+|+..|+.+.-. +.+++.+...+.- .
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~-~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNR-EELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHH-HHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhH-HHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 446789999999996665444444466799999999764 4444333322110 0
Q ss_pred -Ccc-eeeccCCCCCCCCC-----CCccEEEeCCcccCc-ccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCC
Q 030565 60 -ALP-HIKHSWGDAFPIPN-----PDWDLILASDILLYV-KQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP 131 (175)
Q Consensus 60 -~~~-~~~~~~~~~~~~~~-----~~fD~i~~~~~l~~~-~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~ 131 (175)
.+. .+..++....+... .+||+|++..++... .+.+....+++++.++|||||.|++...-.
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~---------- 202 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG---------- 202 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS----------
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC----------
Confidence 011 11223333333322 359999998877432 245577899999999999999998862211
Q ss_pred CCceEeeeeccCC--CcchhHHHHHHHHcCCeeEEec
Q 030565 132 WPAFLMSWRRRIG--KEDETIFFTSCENAGLEVKHLG 166 (175)
Q Consensus 132 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~ 166 (175)
..++....+++. ..+++...+.++++||.+++..
T Consensus 203 -~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 203 -STYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp --SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred -ceeEEECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 111111111111 1256888889999999988775
No 177
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.90 E-value=1.1e-10 Score=81.30 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=92.4
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCccee-eccCCCCCCCCCCCccEEEeCCc
Q 030565 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI-KHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
..++||+|+|.|..+..++.. -.+|++++.|..|. ..+++. +. ..+ ..+|.+ .+-+||+|.+-++
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr-~rL~kk----~y----nVl~~~ew~~----t~~k~dli~clNl 178 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMR-DRLKKK----NY----NVLTEIEWLQ----TDVKLDLILCLNL 178 (288)
T ss_pred CeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHH-HHHhhc----CC----ceeeehhhhh----cCceeehHHHHHH
Confidence 588999999999999999775 56799999999995 444322 11 111 112211 1237999999888
Q ss_pred ccCcccchHHHHHHHHHHhhcCC-CCceeecc--ccC---CCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCe
Q 030565 88 LLYVKQYSNLIKSLSVLLKSYKP-KDSQVGHL--TKN---EQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLE 161 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~p-gG~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (175)
+-.+. +.-++++.+..++.| +|+++++. +.. +-...+...+...++..-.+.+.. ....|.++++++||.
T Consensus 179 LDRc~---~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee-~v~~~~e~lr~~g~~ 254 (288)
T KOG3987|consen 179 LDRCF---DPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEE-EVARFMELLRNCGYR 254 (288)
T ss_pred HHhhc---ChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHH-HHHHHHHHHHhcCch
Confidence 84343 444999999999999 89888872 111 111122222222233222233322 237889999999999
Q ss_pred eEEecceEEE
Q 030565 162 VKHLGSRVYC 171 (175)
Q Consensus 162 ~~~~~~~~~~ 171 (175)
++..+...|+
T Consensus 255 veawTrlPYL 264 (288)
T KOG3987|consen 255 VEAWTRLPYL 264 (288)
T ss_pred hhhhhcCCee
Confidence 9887666554
No 178
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=2.9e-09 Score=70.25 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=58.3
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++|++++|||||+|.++...+-.....|.|+|++|.++ +.+.+|...-.. ++..++-+..+ +.+..+.||.++.+
T Consensus 46 diEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeAL-EIf~rNaeEfEv--qidlLqcdild-le~~~g~fDtaviN 121 (185)
T KOG3420|consen 46 DIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEAL-EIFTRNAEEFEV--QIDLLQCDILD-LELKGGIFDTAVIN 121 (185)
T ss_pred cccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHH-HHHhhchHHhhh--hhheeeeeccc-hhccCCeEeeEEec
Confidence 468999999999999999766554356699999999998 888888877544 33443333322 23345789999998
Q ss_pred Ccc
Q 030565 86 DIL 88 (175)
Q Consensus 86 ~~l 88 (175)
..+
T Consensus 122 ppF 124 (185)
T KOG3420|consen 122 PPF 124 (185)
T ss_pred CCC
Confidence 776
No 179
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.89 E-value=8.3e-09 Score=75.34 Aligned_cols=103 Identities=16% Similarity=0.077 Sum_probs=75.2
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC------CCCC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI------PNPD 78 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 78 (175)
.+.++|||||+++|..++.++... +.+|+.+|+++... +.++.+....+...++..+..+..+.++- ..++
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~-~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENY-ELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 356899999999999999998754 45799999999886 78888888888755444443332222221 1368
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030565 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
||+|+.-.- ...-...++.+.+.|+|||.+++
T Consensus 157 fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 157 FDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred ccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEE
Confidence 999988422 33445788888999999997766
No 180
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.88 E-value=1.5e-09 Score=84.89 Aligned_cols=102 Identities=17% Similarity=0.318 Sum_probs=68.2
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHH-HHHHHHHHhhCCCCCCcceeeccC-CCCCCCCCCCccEEEeCCc
Q 030565 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEI-EDNIAYNSTTNGITPALPHIKHSW-GDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~fD~i~~~~~ 87 (175)
..+||+|||+|+++.+|..+ +|+.+-+.+..- +...+...+. ++ +.+.... ...+|+++++||+|.++.+
T Consensus 119 R~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfaleR-Gv----pa~~~~~~s~rLPfp~~~fDmvHcsrc 190 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFALER-GV----PAMIGVLGSQRLPFPSNAFDMVHCSRC 190 (506)
T ss_pred EEEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhhhc-Cc----chhhhhhccccccCCccchhhhhcccc
Confidence 45899999999999999775 344444433211 1122222222 22 2222222 3568999999999999999
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030565 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
+-.|..... .+|-++-|+|+|||.++.+.+..
T Consensus 191 ~i~W~~~~g--~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 191 LIPWHPNDG--FLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred cccchhccc--ceeehhhhhhccCceEEecCCcc
Confidence 866665544 68889999999999988874443
No 181
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.88 E-value=5.1e-08 Score=71.67 Aligned_cols=147 Identities=16% Similarity=0.123 Sum_probs=97.5
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCC---CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC--CCCCCCCccEE
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMN---LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPNPDWDLI 82 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~---~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~fD~i 82 (175)
..-+||||.||+|..-+.+..... .+|...|+|+..+ +..+..++..++...+.+...+..+. +.......+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv-~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINV-EKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHH-HHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 457899999999999988766543 4699999999887 78888888888854444444443322 22224467999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccC-CCC--C-CCCCCCC--CceEeeeeccCCCcchhHHHHHHH
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN-EQG--E-GTEGLPW--PAFLMSWRRRIGKEDETIFFTSCE 156 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~-~~~--~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 156 (175)
+.+..+-..++.......++-+.+++.|||.++.+..+- +.. + ..+.... ..|.+ ++. +..++-++.+
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvM---RrR---sq~EmD~Lv~ 287 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVM---RRR---SQAEMDQLVE 287 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEE---Eec---CHHHHHHHHH
Confidence 999887555655556678999999999999888872111 111 1 1111100 11222 122 2477888899
Q ss_pred HcCCe
Q 030565 157 NAGLE 161 (175)
Q Consensus 157 ~~g~~ 161 (175)
++||+
T Consensus 288 ~aGF~ 292 (311)
T PF12147_consen 288 AAGFE 292 (311)
T ss_pred HcCCc
Confidence 99997
No 182
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.87 E-value=6.6e-09 Score=80.23 Aligned_cols=97 Identities=14% Similarity=0.183 Sum_probs=64.0
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-C--------------
Q 030565 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-I-------------- 74 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------- 74 (175)
.++||++||+|.+++.+++. ..+|+++|+++.++ +.+++|...++.. ++..+..+..+.++ .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai-~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSV-AAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHH-HHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccc
Confidence 57999999999999998876 66899999999998 8888888887762 33333333322111 0
Q ss_pred CCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 75 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 75 ~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...+||+|+.-.. + ....+ .+++.+.+ |++.+|++
T Consensus 285 ~~~~~D~v~lDPP-R-~G~~~---~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 285 KSYNFSTIFVDPP-R-AGLDD---ETLKLVQA---YERILYIS 319 (362)
T ss_pred cCCCCCEEEECCC-C-CCCcH---HHHHHHHc---cCCEEEEE
Confidence 0125899998544 2 11122 55555543 66666664
No 183
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.87 E-value=1.3e-08 Score=75.69 Aligned_cols=77 Identities=16% Similarity=0.066 Sum_probs=51.0
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...++.+|||+|||+|.++..+++. +.+|+|+|+++.++ +.++++... .++..+..+..+ .++.+-.++.|++
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~-~~~~~~~~~----~~v~~i~~D~~~-~~~~~~~~~~vv~ 111 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLA-PILAETFAE----DNLTIIEGDALK-VDLSELQPLKVVA 111 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHH-HHHHHhhcc----CceEEEEChhhc-CCHHHcCcceEEE
Confidence 3456789999999999999999988 55999999999998 666554422 122333333221 1221112588888
Q ss_pred CCcc
Q 030565 85 SDIL 88 (175)
Q Consensus 85 ~~~l 88 (175)
+-.+
T Consensus 112 NlPY 115 (272)
T PRK00274 112 NLPY 115 (272)
T ss_pred eCCc
Confidence 7653
No 184
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.86 E-value=1.8e-08 Score=74.22 Aligned_cols=75 Identities=20% Similarity=0.253 Sum_probs=50.7
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCcc---E
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWD---L 81 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD---~ 81 (175)
...++.+|||+|||+|.++..+++. +..|+++|+++.++ +.++.+... . ..+.+..+|........|| +
T Consensus 26 ~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~-~~l~~~~~~--~----~~v~v~~~D~~~~~~~~~d~~~~ 97 (253)
T TIGR00755 26 NVLEGDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLA-EILRKLLSL--Y----ERLEVIEGDALKVDLPDFPKQLK 97 (253)
T ss_pred CCCCcCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHH-HHHHHHhCc--C----CcEEEEECchhcCChhHcCCcce
Confidence 3446789999999999999999887 56799999999998 666554422 1 2233333343333223566 7
Q ss_pred EEeCCc
Q 030565 82 ILASDI 87 (175)
Q Consensus 82 i~~~~~ 87 (175)
|+++-.
T Consensus 98 vvsNlP 103 (253)
T TIGR00755 98 VVSNLP 103 (253)
T ss_pred EEEcCC
Confidence 777655
No 185
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.84 E-value=3.7e-09 Score=78.58 Aligned_cols=110 Identities=16% Similarity=0.144 Sum_probs=74.4
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC-CCcceeeccCCCCCC--CCCCCccEEE
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAFP--IPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~fD~i~ 83 (175)
.+|++|||+=|-||.+++.++..++.+|+.+|.|..++ +.+++|...|+.. ..+..+..+.-+.+. -..++||+|+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al-~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRAL-EWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHH-HHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 46899999999999999998887566899999999998 9999999999874 334444433322111 1245899999
Q ss_pred eCCcccCcc---cchHHHHHHHHHHhhcCCCCceeec
Q 030565 84 ASDILLYVK---QYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~---~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-..-|--. -..+...++..+.++++|||.+++.
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~ 237 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC 237 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 843322111 1224567888999999999977654
No 186
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.84 E-value=1.5e-08 Score=75.48 Aligned_cols=110 Identities=14% Similarity=0.197 Sum_probs=69.4
Q ss_pred CcEEEeCCCccHHHHH----HHHhC-----CCcEEEEeCChHHHHHHHHHHHhh-----------------------CC-
Q 030565 10 RRCIELGSGTGALAIF----LRKAM-----NLDITTSDYNDQEIEDNIAYNSTT-----------------------NG- 56 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~----l~~~~-----~~~v~~~D~s~~~l~~~~~~~~~~-----------------------~~- 56 (175)
-+|.-.||.||.=... +.... ..+|+|+|+|+.+|+ .++...-. .+
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~-~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLE-KARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHH-HHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 5899999999975533 33321 246999999999984 43322100 00
Q ss_pred --CCC-CcceeeccCCCCCC--C-CCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030565 57 --ITP-ALPHIKHSWGDAFP--I-PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 57 --~~~-~~~~~~~~~~~~~~--~-~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
..+ .-..+.+...+... + ..+.||+|+|.+++.|. +.+...++++++++.|+|||.+++...+.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-~~~~~~~vl~~l~~~L~pgG~L~lG~sEs 265 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-DKTTQERILRRFVPLLKPDGLLFAGHSEN 265 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-CHHHHHHHHHHHHHHhCCCcEEEEeCccc
Confidence 000 00112222222222 2 24689999999998554 45678899999999999999888864443
No 187
>PRK04148 hypothetical protein; Provisional
Probab=98.83 E-value=4.8e-08 Score=64.41 Aligned_cols=92 Identities=16% Similarity=0.168 Sum_probs=60.1
Q ss_pred CCCcEEEeCCCccH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 8 ERRRCIELGSGTGA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
++.++||+|||+|. ++..|++. |.+|+++|+++..+ +.++.+ +. ..+.-++.+.....-..+|+|.+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV-~~a~~~----~~----~~v~dDlf~p~~~~y~~a~liysi- 84 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAV-EKAKKL----GL----NAFVDDLFNPNLEIYKNAKLIYSI- 84 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHH-HHHHHh----CC----eEEECcCCCCCHHHHhcCCEEEEe-
Confidence 56889999999996 88888765 89999999999887 554433 12 233333322211112357888775
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...++++..+-++.+.+. .-+++.
T Consensus 85 -----rpp~el~~~~~~la~~~~--~~~~i~ 108 (134)
T PRK04148 85 -----RPPRDLQPFILELAKKIN--VPLIIK 108 (134)
T ss_pred -----CCCHHHHHHHHHHHHHcC--CCEEEE
Confidence 335667777778887554 445554
No 188
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.82 E-value=8.4e-08 Score=72.74 Aligned_cols=101 Identities=16% Similarity=0.092 Sum_probs=77.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.+|.+|+|.=||.|-+++.+|+.....|+++|+||.++ +++++|+..|.....+..+..+..+..+ ..+.+|-|++..
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~-~~L~eNi~LN~v~~~v~~i~gD~rev~~-~~~~aDrIim~~ 264 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAV-EYLKENIRLNKVEGRVEPILGDAREVAP-ELGVADRIIMGL 264 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHH-HHHHHHHHhcCccceeeEEeccHHHhhh-ccccCCEEEeCC
Confidence 35899999999999999999998555599999999998 9999999999996665555555433332 227899999975
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceee
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
.- +.. ..+..+.+.+++||.+-+
T Consensus 265 p~----~a~---~fl~~A~~~~k~~g~iHy 287 (341)
T COG2520 265 PK----SAH---EFLPLALELLKDGGIIHY 287 (341)
T ss_pred CC----cch---hhHHHHHHHhhcCcEEEE
Confidence 53 222 677788888889884444
No 189
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=98.82 E-value=3.5e-08 Score=71.57 Aligned_cols=100 Identities=28% Similarity=0.499 Sum_probs=71.0
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHH-----HhhCCCCCCcceeeccCCCCCC--CCCCC-cc
Q 030565 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYN-----STTNGITPALPHIKHSWGDAFP--IPNPD-WD 80 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~-fD 80 (175)
..+|||+|+|+|..++.++...+.+|+.+|...-. ++++.+ ...+.....+....+.|+.... +.... ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~--~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVV--ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhH--HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 45699999999999999999889999999997744 333333 2222333345556678876553 22233 99
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCc
Q 030565 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDS 113 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~ 113 (175)
+|++++++|.....+.+..++..++ -.++.
T Consensus 165 lilasDvvy~~~~~e~Lv~tla~ll---~~~~~ 194 (248)
T KOG2793|consen 165 LILASDVVYEEESFEGLVKTLAFLL---AKDGT 194 (248)
T ss_pred EEEEeeeeecCCcchhHHHHHHHHH---hcCCe
Confidence 9999999999988887777776666 45553
No 190
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.80 E-value=1.1e-08 Score=78.39 Aligned_cols=107 Identities=10% Similarity=0.123 Sum_probs=79.3
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+++|+|||.|....+++....++++++|.++..+......... ..+... ..+...|.-..++++++||.+.+.
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~-~~l~~k-~~~~~~~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKK-AYLDNK-CNFVVADFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHH-HHhhhh-cceehhhhhcCCCCccccCcEEEE
Confidence 345668999999999999999887789999999999775332222211 122111 223444545667899999999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++.+|.++.. .+++|++|+++|||.++..
T Consensus 186 d~~~~~~~~~---~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 186 EVVCHAPDLE---KVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred eecccCCcHH---HHHHHHhcccCCCceEEeH
Confidence 9996666544 9999999999999977766
No 191
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.79 E-value=5e-08 Score=73.60 Aligned_cols=111 Identities=17% Similarity=0.107 Sum_probs=79.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..+|..|||==||||.+.+.+.- .|.+++|+|++..|+ +-++.|....+. ........-....+|+.++++|.|.+-
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl-~G~~viG~Did~~mv-~gak~Nl~~y~i-~~~~~~~~~Da~~lpl~~~~vdaIatD 271 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGL-MGARVIGSDIDERMV-RGAKINLEYYGI-EDYPVLKVLDATNLPLRDNSVDAIATD 271 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhh-cCceEeecchHHHHH-hhhhhhhhhhCc-CceeEEEecccccCCCCCCccceEEec
Confidence 45688999999999999999855 499999999999998 778888887664 222223332234566777789999874
Q ss_pred Cccc-----Cccc-chHHHHHHHHHHhhcCCCCceeeccc
Q 030565 86 DILL-----YVKQ-YSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 86 ~~l~-----~~~~-~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
...- .... ..-..++++.+.++|++||++++..+
T Consensus 272 PPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 272 PPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 3321 1111 12356889999999999998888643
No 192
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.79 E-value=2.2e-08 Score=77.29 Aligned_cols=100 Identities=11% Similarity=0.097 Sum_probs=72.4
Q ss_pred CcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030565 10 RRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
-+|||+.||+|..++.++++. ..+|+++|+|+..+ +.+++|...++.. .+..+..+....+......||+|..- .
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av-~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlD-P 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAV-ESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDID-P 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeC-C
Confidence 479999999999999999873 46799999999998 8899999887662 12222222111112123579999884 4
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030565 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+ .. .. ..+..+.+.++++|.++++.
T Consensus 123 f-Gs--~~---~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 F-GT--PA---PFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C-CC--cH---HHHHHHHHhcccCCEEEEEe
Confidence 3 22 22 78889999999999999984
No 193
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.79 E-value=4e-08 Score=69.41 Aligned_cols=111 Identities=20% Similarity=0.247 Sum_probs=61.3
Q ss_pred CCCcEEEeCCCccHHHH----HHHHhC------CCcEEEEeCChHHHHHHHHHHHhh-------------------CC-C
Q 030565 8 ERRRCIELGSGTGALAI----FLRKAM------NLDITTSDYNDQEIEDNIAYNSTT-------------------NG-I 57 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~----~l~~~~------~~~v~~~D~s~~~l~~~~~~~~~~-------------------~~-~ 57 (175)
..-+|.-.||++|.=.. .+.... ..+|+|+|+|+.+++ .+++..-. .+ .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~-~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALE-KARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHH-HHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHH-HHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 34679999999997553 333311 247999999999984 43311100 00 0
Q ss_pred C-------CCcceeeccCCCCCCCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030565 58 T-------PALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 58 ~-------~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
. ..+.+..++..+ .+...+.||+|+|.+++-+. +.+...++++.+++.|+|||.+++...+.
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl~~l~~~L~pgG~L~lG~sE~ 178 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYF-DPETQQRVLRRLHRSLKPGGYLFLGHSES 178 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE-TT--
T ss_pred eeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEe-CHHHHHHHHHHHHHHcCCCCEEEEecCcc
Confidence 0 011122222222 12345689999999998544 46778899999999999999988874443
No 194
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.77 E-value=2e-08 Score=72.47 Aligned_cols=110 Identities=18% Similarity=0.182 Sum_probs=75.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
.+..|.|+|||-+.++. .....|+.+|.-+.- . ..+.-+. ...|.++++.|+++..-+
T Consensus 180 ~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~~-------------~----~V~~cDm-~~vPl~d~svDvaV~CLS 237 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS----SERHKVHSFDLVAVN-------------E----RVIACDM-RNVPLEDESVDVAVFCLS 237 (325)
T ss_pred CceEEEecccchhhhhh----ccccceeeeeeecCC-------------C----ceeeccc-cCCcCccCcccEEEeeHh
Confidence 45779999999998764 225568998883311 0 1111222 236788899999887655
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030565 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
| . -.++...+.|+.|+|++||.++|+.... ++. +...|.+.+...||++.+.
T Consensus 238 L-M---gtn~~df~kEa~RiLk~gG~l~IAEv~S--------------------Rf~--dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 238 L-M---GTNLADFIKEANRILKPGGLLYIAEVKS--------------------RFS--DVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred h-h---cccHHHHHHHHHHHhccCceEEEEehhh--------------------hcc--cHHHHHHHHHHcCCeeeeh
Confidence 5 2 3366799999999999999888852211 111 2477999999999998776
No 195
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.75 E-value=2.6e-08 Score=76.71 Aligned_cols=98 Identities=12% Similarity=0.112 Sum_probs=64.3
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-------C---C---
Q 030565 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-------I---P--- 75 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~--- 75 (175)
+.+|||++||+|.+++.+++. ..+|+++|+++.++ +.+++|...++.. ++..+..+..+.++ + .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av-~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSV-NAAQYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEEcCHHHHHHHHhhccccccccccc
Confidence 357999999999999999876 56899999999998 8888898888762 33444333322111 0 0
Q ss_pred --CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 76 --NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 --~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...||+|+.-.. ... -...+++.+.+ |++.+|++
T Consensus 275 ~~~~~~d~v~lDPP--R~G---~~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 275 LKSYNCSTIFVDPP--RAG---LDPDTCKLVQA---YERILYIS 310 (353)
T ss_pred cccCCCCEEEECCC--CCC---CcHHHHHHHHc---CCcEEEEE
Confidence 113799888433 111 12255555543 67766665
No 196
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.74 E-value=1.2e-07 Score=70.51 Aligned_cols=110 Identities=18% Similarity=0.163 Sum_probs=69.2
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcc-eeeccCCCCCCCCCCCccEE
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALP-HIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~fD~i 82 (175)
.+...+|||+|||+|.-...+.... -.+++++|.|+.|+ +..+.-... ....... .......+..++ ...|+|
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~-~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~--~~~DLv 106 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEML-ELAKRLLRA-GPNNRNAEWRRVLYRDFLPF--PPDDLV 106 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHH-HHHHHHHhc-ccccccchhhhhhhcccccC--CCCcEE
Confidence 3567899999999998776665543 34699999999997 544433322 2211100 000001111222 234999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCC
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNE 122 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~ 122 (175)
+++++|....+ .....+++.+.+.+++ .++++.++..
T Consensus 107 i~s~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 107 IASYVLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred EEehhhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 99999977776 7788888888887765 6777644443
No 197
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.73 E-value=1.1e-07 Score=75.55 Aligned_cols=108 Identities=15% Similarity=0.179 Sum_probs=75.1
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCCCCCcc
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWD 80 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD 80 (175)
..+|.+|||++||+|.=+..++...+ ..|++.|+++.-+ +.++.|++..+. .++.....+.. ....+.||
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~-~~L~~nl~r~G~----~nv~v~~~D~~~~~~~~~~~fD 185 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRV-KVLHANISRCGV----SNVALTHFDGRVFGAALPETFD 185 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHH-HHHHHHHHHcCC----CeEEEEeCchhhhhhhchhhcC
Confidence 35789999999999999999988763 4699999999887 777888887666 22222222221 23345799
Q ss_pred EEEe----C--CcccCccc-------------chHHHHHHHHHHhhcCCCCceeecc
Q 030565 81 LILA----S--DILLYVKQ-------------YSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 81 ~i~~----~--~~l~~~~~-------------~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
.|+. + .++...++ ..-+.++|..+.+.|||||+++.++
T Consensus 186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 9995 2 11211110 0123688899999999999998884
No 198
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.72 E-value=6.3e-08 Score=67.73 Aligned_cols=95 Identities=20% Similarity=0.265 Sum_probs=65.4
Q ss_pred cEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCccc
Q 030565 11 RCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILL 89 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (175)
+++|+|+|.|-.++.+|-.. ..+++.+|.+..-+ ..++.....-++ .++..+.....+ .....+||+|++..+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~-~FL~~~~~~L~L-~nv~v~~~R~E~--~~~~~~fd~v~aRAv~- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKV-AFLKEVVRELGL-SNVEVINGRAEE--PEYRESFDVVTARAVA- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHH-HHHHHHHHHHT--SSEEEEES-HHH--TTTTT-EEEEEEESSS-
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHH-HHHHHHHHHhCC-CCEEEEEeeecc--cccCCCccEEEeehhc-
Confidence 79999999999999987765 56799999999875 455544444445 122333222222 3456799999998774
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceee
Q 030565 90 YVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 90 ~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
.+..+++-..+.+++||.+++
T Consensus 126 ------~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 126 ------PLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp ------SHHHHHHHHGGGEEEEEEEEE
T ss_pred ------CHHHHHHHHHHhcCCCCEEEE
Confidence 233788888889999997666
No 199
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.71 E-value=1.7e-07 Score=69.13 Aligned_cols=111 Identities=17% Similarity=0.223 Sum_probs=70.1
Q ss_pred CCcEEEeCCCccHHH----HHHHHhC------CCcEEEEeCChHHHHHHHHHHHhh-----CCCCC--------------
Q 030565 9 RRRCIELGSGTGALA----IFLRKAM------NLDITTSDYNDQEIEDNIAYNSTT-----NGITP-------------- 59 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~----~~l~~~~------~~~v~~~D~s~~~l~~~~~~~~~~-----~~~~~-------------- 59 (175)
.-+|.-.||+||.=. +.+.+.. ..+|+|+|+|..+|+ .++...-. .++..
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~-~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLE-KARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHH-HHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 567999999999644 4444443 246999999999984 33311111 11100
Q ss_pred ------CcceeeccCCCCCC--CCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030565 60 ------ALPHIKHSWGDAFP--IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 60 ------~~~~~~~~~~~~~~--~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
.-..+.+...+.+. +..+.||+|+|.+++-+. +.+...++++.++..|+|||.+++-..+.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF-d~~~q~~il~~f~~~L~~gG~LflG~sE~ 244 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF-DEETQERILRRFADSLKPGGLLFLGHSET 244 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEee-CHHHHHHHHHHHHHHhCCCCEEEEccCcc
Confidence 00011222222221 145679999999998444 46778899999999999999998864443
No 200
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.69 E-value=1.6e-07 Score=70.69 Aligned_cols=144 Identities=17% Similarity=0.117 Sum_probs=91.9
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCccc
Q 030565 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILL 89 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (175)
...+|+|+|.|+.+..+.+. ..+|-+++++..-+ ...+...+ .+ +..+. ++.+.. -..-|+|++-++++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v-~~~a~~~~-~g----V~~v~---gdmfq~-~P~~daI~mkWiLh 247 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFV-LAAAPYLA-PG----VEHVA---GDMFQD-TPKGDAIWMKWILH 247 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHH-Hhhhhhhc-CC----cceec---cccccc-CCCcCeEEEEeecc
Confidence 67999999999999988884 77799999988776 33333332 22 22332 233322 22346999999997
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceeeccccCCC--CCCCC----CCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeE
Q 030565 90 YVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQ--GEGTE----GLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVK 163 (175)
Q Consensus 90 ~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (175)
+|. .++..++|++.+..|+|+|.+++...-... ..... ......+.......-...+.++|...+.++||.+.
T Consensus 248 dwt-DedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~ 326 (342)
T KOG3178|consen 248 DWT-DEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVC 326 (342)
T ss_pred cCC-hHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCcee
Confidence 777 578999999999999999999888432221 11111 00000111111111112245899999999999876
Q ss_pred Ee
Q 030565 164 HL 165 (175)
Q Consensus 164 ~~ 165 (175)
.+
T Consensus 327 ~~ 328 (342)
T KOG3178|consen 327 MV 328 (342)
T ss_pred EE
Confidence 65
No 201
>PLN02823 spermine synthase
Probab=98.66 E-value=1.6e-07 Score=71.65 Aligned_cols=107 Identities=13% Similarity=0.090 Sum_probs=68.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCCCCCccEEE
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~i~ 83 (175)
..++||.||+|.|..+..+.+.. ..+|+++|+++.++ +.+++....+...-.-+.+.+..+|.. ...+++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv-~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVV-DFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHH-HHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 46789999999999999887854 45799999999998 677666543221011133333333322 23356899999
Q ss_pred eCCcccCcc--cch-H--HHHHHH-HHHhhcCCCCceeec
Q 030565 84 ASDILLYVK--QYS-N--LIKSLS-VLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~--~~~-~--~~~~l~-~l~~~l~pgG~~~~~ 117 (175)
+-. . ... ..+ . -..+++ .+.+.|+|||.+++.
T Consensus 182 ~D~-~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDL-A-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecC-C-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 742 1 100 000 0 125677 788999999987765
No 202
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.64 E-value=2e-07 Score=67.20 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=69.1
Q ss_pred CcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC---CC--CCCCCccEEE
Q 030565 10 RRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FP--IPNPDWDLIL 83 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~fD~i~ 83 (175)
..+||||||.|.+...+|+.. ...++|+|+....+ ..+...+...++ +++.+...+. ++ +++++.|-|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v-~~~l~k~~~~~l----~Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGV-AKALKKIKELGL----KNLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHH-HHHHHHHHHcCC----CcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 469999999999999999874 56799999999887 444444444444 2333333332 22 2345899888
Q ss_pred eCCcccCcc--c---chHHHHHHHHHHhhcCCCCceeecc
Q 030565 84 ASDILLYVK--Q---YSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 84 ~~~~l~~~~--~---~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
.+..=-+.- + ---....++.+.+.|+|||.+.+.+
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 753210000 0 0012488999999999999999983
No 203
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.9e-07 Score=64.53 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=71.3
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC---CcEEEEeCChHHHHHHHHHHHhhCCCCCC------cceeeccCCCCCC--C
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMN---LDITTSDYNDQEIEDNIAYNSTTNGITPA------LPHIKHSWGDAFP--I 74 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~---~~v~~~D~s~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~ 74 (175)
+.+|.+.||+|+|+|.++..++...+ ..++|+|.-++.+ +..++|+.....+.. .....+..++... .
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLV-e~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELV-EYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHH-HHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 66899999999999999988886553 3458999999887 777777766543211 1122222344332 2
Q ss_pred CCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 75 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 75 ~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...+||.|.+...- . ++-+++...|+|||++++-
T Consensus 159 e~a~YDaIhvGAaa---~------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 159 EQAPYDAIHVGAAA---S------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ccCCcceEEEccCc---c------ccHHHHHHhhccCCeEEEe
Confidence 34589999987543 2 4557788889999999886
No 204
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.62 E-value=4.1e-08 Score=67.01 Aligned_cols=76 Identities=12% Similarity=0.202 Sum_probs=52.3
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCC-CccEEEeCCc
Q 030565 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNP-DWDLILASDI 87 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~fD~i~~~~~ 87 (175)
..|+|+.||.|..++.+|+. ..+|+++|+++..+ +.++.|.+..+...++..+..++.+..+ ...+ .||+|+++..
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~-~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERL-ECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHH-HHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 36999999999999999997 77899999999998 8999999998876666777666644332 2222 2899998643
No 205
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.58 E-value=4.1e-06 Score=61.79 Aligned_cols=144 Identities=16% Similarity=0.156 Sum_probs=87.4
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhh----CCCC---------------CCcceee---
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT----NGIT---------------PALPHIK--- 65 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~----~~~~---------------~~~~~~~--- 65 (175)
.+.+||=-|||.|+++..+|+. |..+.|.|.|--|+. ........ +... .+...+.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll-~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLL-ASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHH-HHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4578999999999999999998 999999999999963 22211110 0000 0011111
Q ss_pred --------------ccCCCCCC--CC---CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCC
Q 030565 66 --------------HSWGDAFP--IP---NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEG 126 (175)
Q Consensus 66 --------------~~~~~~~~--~~---~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~ 126 (175)
+..+|... .. .++||+|+... +...-+++...++.+.++||||| +.|-..+..-...
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F---FIDTA~Ni~~Yi~tI~~lLkpgG-~WIN~GPLlyh~~ 209 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF---FIDTAENIIEYIETIEHLLKPGG-YWINFGPLLYHFE 209 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE---EeechHHHHHHHHHHHHHhccCC-EEEecCCccccCC
Confidence 11111111 11 36899999873 33666789999999999999999 3343222211111
Q ss_pred CC--CCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEecc
Q 030565 127 TE--GLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGS 167 (175)
Q Consensus 127 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 167 (175)
.. ..+.+ -..+.+++.+++++.||+++....
T Consensus 210 ~~~~~~~~s----------veLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 210 PMSIPNEMS----------VELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCCCCcc----------cCCCHHHHHHHHHHCCCEEEEEEE
Confidence 11 00000 122458999999999999876443
No 206
>PRK00536 speE spermidine synthase; Provisional
Probab=98.58 E-value=5.2e-07 Score=66.39 Aligned_cols=99 Identities=12% Similarity=0.031 Sum_probs=65.8
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
..++||=||.|.|...+++.+.. .+|+.+|+++.++ +.+++........-.-+.+.+.. .......++||+||.-..
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv-~~~k~~lP~~~~~~~DpRv~l~~-~~~~~~~~~fDVIIvDs~ 148 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKIL-DSFISFFPHFHEVKNNKNFTHAK-QLLDLDIKKYDLIICLQE 148 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHH-HHHHHHCHHHHHhhcCCCEEEee-hhhhccCCcCCEEEEcCC
Confidence 46899999999999999998974 5999999999998 55554222211111112222111 111112368999997533
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. .+ ...+.+.+.|+|||.++..
T Consensus 149 ~-----~~---~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 149 P-----DI---HKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred C-----Ch---HHHHHHHHhcCCCcEEEEC
Confidence 2 22 6778899999999988776
No 207
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=5.1e-07 Score=71.06 Aligned_cols=99 Identities=20% Similarity=0.236 Sum_probs=69.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---C--CCCCccE
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---I--PNPDWDL 81 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~fD~ 81 (175)
.++.++||+=||.|.+++.+|+. ..+|+|+|+++.++ +.+++|.+.|+.. ++.+..++... - ....+|+
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV-~~A~~NA~~n~i~----N~~f~~~~ae~~~~~~~~~~~~d~ 365 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAV-EAAQENAAANGID----NVEFIAGDAEEFTPAWWEGYKPDV 365 (432)
T ss_pred cCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHH-HHHHHHHHHcCCC----cEEEEeCCHHHHhhhccccCCCCE
Confidence 35678999999999999999976 88999999999998 9999999999883 34444433222 1 2347899
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+.-.. ...--..+++.+.+ ++|...+|++
T Consensus 366 VvvDPP-----R~G~~~~~lk~l~~-~~p~~IvYVS 395 (432)
T COG2265 366 VVVDPP-----RAGADREVLKQLAK-LKPKRIVYVS 395 (432)
T ss_pred EEECCC-----CCCCCHHHHHHHHh-cCCCcEEEEe
Confidence 988432 11111255555554 5666666665
No 208
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.55 E-value=1.5e-06 Score=58.97 Aligned_cols=111 Identities=16% Similarity=0.101 Sum_probs=76.3
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CC-CCCCCC
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF-PIPNPD 78 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~ 78 (175)
+..+|.-|||+|-|||.++..+.+++ ...++++++|++-. ..+.+.-.. . ..+..+..+ .+ +..+..
T Consensus 45 ~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~-~~L~~~~p~--~----~ii~gda~~l~~~l~e~~gq~ 117 (194)
T COG3963 45 DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFV-CHLNQLYPG--V----NIINGDAFDLRTTLGEHKGQF 117 (194)
T ss_pred CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHH-HHHHHhCCC--c----cccccchhhHHHHHhhcCCCe
Confidence 44567899999999999999988876 34599999999775 443322111 1 122222111 11 234558
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCC
Q 030565 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQ 123 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~ 123 (175)
||.|+|.-.+-..+ ...-.++++++...+.+||.++-..|....
T Consensus 118 ~D~viS~lPll~~P-~~~~iaile~~~~rl~~gg~lvqftYgp~s 161 (194)
T COG3963 118 FDSVISGLPLLNFP-MHRRIAILESLLYRLPAGGPLVQFTYGPLS 161 (194)
T ss_pred eeeEEeccccccCc-HHHHHHHHHHHHHhcCCCCeEEEEEecCCC
Confidence 99999987763444 456679999999999999988888777433
No 209
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.54 E-value=5.9e-07 Score=64.06 Aligned_cols=96 Identities=20% Similarity=0.272 Sum_probs=65.7
Q ss_pred CCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCC-CC-ccEEEeC
Q 030565 9 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN-PD-WDLILAS 85 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-fD~i~~~ 85 (175)
+++++|||+|.|-.++.+|-.. ..+|+.+|....-+ .-++.....-++ ++++...+....+.. .. ||+|++.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~-~FL~~~~~eL~L----~nv~i~~~RaE~~~~~~~~~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI-AFLREVKKELGL----ENVEIVHGRAEEFGQEKKQYDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH-HHHHHHHHHhCC----CCeEEehhhHhhcccccccCcEEEee
Confidence 6899999999999999987433 66799999999775 455544444444 334444333222222 13 9999997
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
.+- .+..+.+-....+++||.+++
T Consensus 143 Ava-------~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 143 AVA-------SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred hcc-------chHHHHHHHHHhcccCCcchh
Confidence 664 344777778888999886544
No 210
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.54 E-value=8.5e-07 Score=61.97 Aligned_cols=104 Identities=18% Similarity=0.227 Sum_probs=64.9
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhC-CCc---------EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAM-NLD---------ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI 74 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~---------v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (175)
.+.++..+||--||+|.+.++.+... ... ++|+|+++.++ +.++.|....+....+.....+. ..+++
T Consensus 25 ~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v-~~a~~N~~~ag~~~~i~~~~~D~-~~l~~ 102 (179)
T PF01170_consen 25 GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAV-RGARENLKAAGVEDYIDFIQWDA-RELPL 102 (179)
T ss_dssp T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHH-HHHHHHHHHTT-CGGEEEEE--G-GGGGG
T ss_pred CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHH-HHHHHHHHhcccCCceEEEecch-hhccc
Confidence 34567899999999999999876653 333 78999999998 78888888877643333332222 22334
Q ss_pred CCCCccEEEeCCcccCccc-chH----HHHHHHHHHhhcCC
Q 030565 75 PNPDWDLILASDILLYVKQ-YSN----LIKSLSVLLKSYKP 110 (175)
Q Consensus 75 ~~~~fD~i~~~~~l~~~~~-~~~----~~~~l~~l~~~l~p 110 (175)
.++++|+|+++..+-.-.. ..+ ...+++++.+++++
T Consensus 103 ~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 103 PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 5679999999876521111 111 24567788888888
No 211
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=4.7e-07 Score=64.79 Aligned_cols=143 Identities=15% Similarity=0.053 Sum_probs=86.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---C-CCCCCccE
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---P-IPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~fD~ 81 (175)
..+|+.+||+|+-||.++..+.++++.+|+|+|..-.++...++.. . ..+.+...+.. + ...+..|+
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d-----~----rV~~~E~tN~r~l~~~~~~~~~d~ 147 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND-----P----RVIVLERTNVRYLTPEDFTEKPDL 147 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC-----C----cEEEEecCChhhCCHHHcccCCCe
Confidence 3578999999999999999999998889999999887762222211 1 11122221111 1 11225688
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCe
Q 030565 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLE 161 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (175)
+++--++ - .+..++..+..+++|++.++..+-++.+...+.........-. .........+.+.+.+.||.
T Consensus 148 ~v~DvSF---I---SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~---~~~~~v~~~i~~~~~~~g~~ 218 (245)
T COG1189 148 IVIDVSF---I---SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDP---KLHAEVLSKIENFAKELGFQ 218 (245)
T ss_pred EEEEeeh---h---hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCc---chHHHHHHHHHHHHhhcCcE
Confidence 8886554 2 4558999999999999877776444432221111111111110 00011236778888888998
Q ss_pred eEEec
Q 030565 162 VKHLG 166 (175)
Q Consensus 162 ~~~~~ 166 (175)
+..+.
T Consensus 219 ~~gl~ 223 (245)
T COG1189 219 VKGLI 223 (245)
T ss_pred EeeeE
Confidence 87763
No 212
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.47 E-value=2.9e-06 Score=57.00 Aligned_cols=104 Identities=18% Similarity=0.275 Sum_probs=63.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHH-----hCCCcEEEEeCChHHHHHHHHHHHhhCC--CCCCcceeeccCCCCCCCCCCCc
Q 030565 7 IERRRCIELGSGTGALAIFLRK-----AMNLDITTSDYNDQEIEDNIAYNSTTNG--ITPALPHIKHSWGDAFPIPNPDW 79 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~-----~~~~~v~~~D~s~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~f 79 (175)
.+..+|+|+|||.|.++..++. ..+.+|+++|.++..+ +.+.+..+... .............+. ......
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 100 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLV-ESAQKRAQKLGSDLEKRLSFIQGDIADE--SSSDPP 100 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHH-HHHHHHHHHhcchhhccchhhccchhhh--cccCCC
Confidence 4567899999999999999988 5578899999999887 44443333333 111122221111111 124567
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030565 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
+++++-++. .+..+ .+|+.+.+ |+-.+++..+..
T Consensus 101 ~~~vgLHaC---G~Ls~--~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 101 DILVGLHAC---GDLSD--RALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred eEEEEeecc---cchHH--HHHHHHHH---cCCCEEEEcCCc
Confidence 888887776 44333 66666665 555555554443
No 213
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.47 E-value=8.2e-07 Score=64.70 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=59.4
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030565 4 REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
.+..++..|||+|-|||.++..+... +.+|+|+++++.|+ ..+++..+.... ....+.-.++.+......||.++
T Consensus 54 a~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmv-ael~krv~gtp~---~~kLqV~~gD~lK~d~P~fd~cV 128 (315)
T KOG0820|consen 54 ADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMV-AELEKRVQGTPK---SGKLQVLHGDFLKTDLPRFDGCV 128 (315)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHH-HHHHHHhcCCCc---cceeeEEecccccCCCcccceee
Confidence 45667899999999999999999776 99999999999998 666655554332 23344445666666667899999
Q ss_pred eCCc
Q 030565 84 ASDI 87 (175)
Q Consensus 84 ~~~~ 87 (175)
++-.
T Consensus 129 sNlP 132 (315)
T KOG0820|consen 129 SNLP 132 (315)
T ss_pred ccCC
Confidence 8644
No 214
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.47 E-value=2.1e-06 Score=61.14 Aligned_cols=105 Identities=14% Similarity=0.143 Sum_probs=74.2
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-----CCCCCC
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-----PIPNPD 78 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 78 (175)
...++++||||.=||.-++.+|... +.+|+++|+++... +...+.....+....++.+...-.+.+ ..+.++
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~-~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAY-EIGLELVKLAGVDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHH-HHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCc
Confidence 4568999999998988888777765 67899999999887 555555565566444555443332222 134679
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
||.++.- .+..+=.....++.+++++||.+++-
T Consensus 150 fDfaFvD------adK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 150 FDFAFVD------ADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred eeEEEEc------cchHHHHHHHHHHHhhcccccEEEEe
Confidence 9999873 22333348889999999999988774
No 215
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.47 E-value=4.1e-07 Score=62.81 Aligned_cols=102 Identities=13% Similarity=0.137 Sum_probs=73.9
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030565 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
.+.+.|+|+|+|.++..+|+. +.+|++++.+|.-. ..+.+|+..++. .++....++.....=..-|+|+|-..=
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a-~~a~eN~~v~g~----~n~evv~gDA~~y~fe~ADvvicEmlD 106 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRA-RLAEENLHVPGD----VNWEVVVGDARDYDFENADVVICEMLD 106 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHH-HHhhhcCCCCCC----cceEEEecccccccccccceeHHHHhh
Confidence 467999999999999999887 88899999999775 778888776666 455555566554333567888873211
Q ss_pred cCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 89 LYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-..-.+.+..+++.+..-|+.++.++=.
T Consensus 107 -TaLi~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 107 -TALIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred -HHhhcccccHHHHHHHHHhhcCCccccH
Confidence 1122456678888888888988866544
No 216
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.46 E-value=1e-06 Score=70.93 Aligned_cols=104 Identities=16% Similarity=0.078 Sum_probs=68.6
Q ss_pred CCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC----CCCCCCCccEEE
Q 030565 9 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA----FPIPNPDWDLIL 83 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~fD~i~ 83 (175)
+..+||||||.|.+...+|+.. ...++|+|+....+...++ .....++ .++.+-..+. ..++++++|.|+
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~-~~~~~~l----~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLK-LAGEQNI----TNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHH-HHHHcCC----CeEEEEcCCHHHHHHhcCcccccEEE
Confidence 5679999999999999998874 5679999999987744443 4444444 2222222211 125677899888
Q ss_pred eCCcccCccc-----chHHHHHHHHHHhhcCCCCceeec
Q 030565 84 ASDILLYVKQ-----YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~-----~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+..=-+.-. ----...++.+.+.|+|||.+.+.
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 7533211000 001248899999999999988886
No 217
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=1.4e-06 Score=63.82 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=56.5
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCC---CccE
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP---DWDL 81 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~fD~ 81 (175)
+..++..|||||+|.|.++..+++. +..|+++++++.++ +.+++.... ..++.+..+|.+...-. .++.
T Consensus 27 ~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~-~~L~~~~~~------~~n~~vi~~DaLk~d~~~l~~~~~ 98 (259)
T COG0030 27 NISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLA-EVLKERFAP------YDNLTVINGDALKFDFPSLAQPYK 98 (259)
T ss_pred CCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHH-HHHHHhccc------ccceEEEeCchhcCcchhhcCCCE
Confidence 4455789999999999999999887 78899999999887 666655431 13345555665554333 6788
Q ss_pred EEeCCcccCcc
Q 030565 82 ILASDILLYVK 92 (175)
Q Consensus 82 i~~~~~l~~~~ 92 (175)
|+++-.. +..
T Consensus 99 vVaNlPY-~Is 108 (259)
T COG0030 99 VVANLPY-NIS 108 (259)
T ss_pred EEEcCCC-ccc
Confidence 8887553 443
No 218
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.45 E-value=2.1e-06 Score=65.00 Aligned_cols=108 Identities=18% Similarity=0.112 Sum_probs=67.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-----CCcEEEEeCChHHHHHHHHHHHh-hCCCCCCcceeeccCCCC---CCC--CC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNST-TNGITPALPHIKHSWGDA---FPI--PN 76 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-----~~~v~~~D~s~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~--~~ 76 (175)
++..++|+|||+|.=+..+.+.. ...++++|+|..+|+ .+..++. ..-....+..+..+..+. ++. ..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~-~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQ-RTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHH-HHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 46689999999999876655543 356999999999984 4444444 211111111122211121 111 12
Q ss_pred CCccEEEe-CCcccCcccchHHHHHHHHHHh-hcCCCCceeec
Q 030565 77 PDWDLILA-SDILLYVKQYSNLIKSLSVLLK-SYKPKDSQVGH 117 (175)
Q Consensus 77 ~~fD~i~~-~~~l~~~~~~~~~~~~l~~l~~-~l~pgG~~~~~ 117 (175)
....+++. ..++.+. ..++...+|+++.+ .|+||+.+++.
T Consensus 155 ~~~r~~~flGSsiGNf-~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 155 SRPTTILWLGSSIGNF-SRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CCccEEEEeCccccCC-CHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 23556555 4466444 46678899999999 99999998887
No 219
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.43 E-value=4.2e-07 Score=64.32 Aligned_cols=121 Identities=20% Similarity=0.131 Sum_probs=80.8
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEeCCcc
Q 030565 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILASDIL 88 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~~~l 88 (175)
-++|||||=+......- ..-..|+.+|.++..- ... +.++.. -.+| ...+.||+|.++-++
T Consensus 53 lrlLEVGals~~N~~s~--~~~fdvt~IDLns~~~-~I~-----------qqDFm~----rplp~~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--SGWFDVTRIDLNSQHP-GIL-----------QQDFME----RPLPKNESEKFDVISLSLVL 114 (219)
T ss_pred ceEEeecccCCCCcccc--cCceeeEEeecCCCCC-Cce-----------eecccc----CCCCCCcccceeEEEEEEEE
Confidence 68999999755443332 2234599999987331 110 111111 1122 235689999999999
Q ss_pred cCcccchHHHHHHHHHHhhcCCCCc-----eeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeE
Q 030565 89 LYVKQYSNLIKSLSVLLKSYKPKDS-----QVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVK 163 (175)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~~l~pgG~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (175)
.+.++..+.-++++.+.+.|+|+|. ++++++.. .. .- .++- +.+.|..+|+..||...
T Consensus 115 NfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~------------Cv--~N-SRy~--~~~~l~~im~~LGf~~~ 177 (219)
T PF11968_consen 115 NFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP------------CV--TN-SRYM--TEERLREIMESLGFTRV 177 (219)
T ss_pred eeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch------------Hh--hc-cccc--CHHHHHHHHHhCCcEEE
Confidence 9999999999999999999999998 77764432 10 00 1111 25889999999999865
Q ss_pred Ee
Q 030565 164 HL 165 (175)
Q Consensus 164 ~~ 165 (175)
..
T Consensus 178 ~~ 179 (219)
T PF11968_consen 178 KY 179 (219)
T ss_pred EE
Confidence 54
No 220
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.41 E-value=1.8e-06 Score=64.42 Aligned_cols=83 Identities=16% Similarity=0.297 Sum_probs=49.3
Q ss_pred CCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhC-CCCCCcceeeccCCC-CC---CCCCCCccEE
Q 030565 9 RRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN-GITPALPHIKHSWGD-AF---PIPNPDWDLI 82 (175)
Q Consensus 9 ~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~---~~~~~~fD~i 82 (175)
.-++||||+|. ....+-.++..+.+++|+|+++..+ ++++.++..| ++...+..+...... .+ ....+.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl-~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSL-ESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHH-HHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHH-HHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 56899999997 4656666666699999999999998 9999999999 887766665443321 12 2234589999
Q ss_pred EeCCcccCcc
Q 030565 83 LASDILLYVK 92 (175)
Q Consensus 83 ~~~~~l~~~~ 92 (175)
+|+..+|...
T Consensus 182 mCNPPFy~s~ 191 (299)
T PF05971_consen 182 MCNPPFYSSQ 191 (299)
T ss_dssp EE-----SS-
T ss_pred ecCCccccCh
Confidence 9999985443
No 221
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.40 E-value=6.3e-06 Score=55.44 Aligned_cols=102 Identities=21% Similarity=0.273 Sum_probs=63.6
Q ss_pred EEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC-CCCCCC-CCccEEEeCCc
Q 030565 12 CIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AFPIPN-PDWDLILASDI 87 (175)
Q Consensus 12 vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~fD~i~~~~~ 87 (175)
++|+|||+|... .++.... ..++++|+++.++. ........... ..+.....+... ..++.. ..||++ ....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLA-LARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHH-HHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 999999999977 4434322 37899999999874 32222211111 002233333333 255555 489999 5444
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030565 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
..+... ....+.++.+.++|+|.+++....
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 433333 559999999999999988887433
No 222
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.40 E-value=1e-06 Score=62.70 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=56.6
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCc-EEEEeCChHHHH------HHHHHHHhhCCCCCCcceeeccCCCCCCCC--
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMNLD-ITTSDYNDQEIE------DNIAYNSTTNGITPALPHIKHSWGDAFPIP-- 75 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~-v~~~D~s~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 75 (175)
.+.+++..+|||||.|.....+|...+++ .+|+++.+.... +..++.....+. ....+.+..++.+...
T Consensus 39 ~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~--~~~~v~l~~gdfl~~~~~ 116 (205)
T PF08123_consen 39 NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK--RPGKVELIHGDFLDPDFV 116 (205)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB-----EEEEECS-TTTHHHH
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc--ccccceeeccCccccHhH
Confidence 34568899999999999998877766666 999999996532 111122222222 2234444444433211
Q ss_pred ---CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 76 ---NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ---~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-..-|+|++++.+ +. +++...+.++...||+|.+++.+
T Consensus 117 ~~~~s~AdvVf~Nn~~-F~---~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 117 KDIWSDADVVFVNNTC-FD---PDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp HHHGHC-SEEEE--TT-T----HHHHHHHHHHHTTS-TT-EEEES
T ss_pred hhhhcCCCEEEEeccc-cC---HHHHHHHHHHHhcCCCCCEEEEC
Confidence 1245899999887 22 23446668888889998766544
No 223
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.38 E-value=7.2e-06 Score=58.42 Aligned_cols=126 Identities=18% Similarity=0.214 Sum_probs=77.7
Q ss_pred EEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCC-CccEEEeCCcc
Q 030565 12 CIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNP-DWDLILASDIL 88 (175)
Q Consensus 12 vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~fD~i~~~~~l 88 (175)
|.||||-.|.+..+|.+..- ..++++|+++.-+ +.++.+....++..+ +....++.+. +..+ ..|.|+.+.+=
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL-~~A~~~i~~~~l~~~---i~~rlgdGL~~l~~~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPL-EKAKENIAKYGLEDR---IEVRLGDGLEVLKPGEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHH-HHHHHHHHHTT-TTT---EEEEE-SGGGG--GGG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCccc---EEEEECCcccccCCCCCCCEEEEecCC
Confidence 68999999999999999753 3599999999998 888888888887543 3334444443 3333 37888887663
Q ss_pred cCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEE----
Q 030565 89 LYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH---- 164 (175)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---- 164 (175)
-..+..++++....+++...|++. +. .....+.+++.+.||.+.+
T Consensus 77 -----G~lI~~ILe~~~~~~~~~~~lILq-----------------------P~---~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 77 -----GELIIEILEAGPEKLSSAKRLILQ-----------------------PN---THAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp -----HHHHHHHHHHTGGGGTT--EEEEE-----------------------ES---S-HHHHHHHHHHTTEEEEEEEEE
T ss_pred -----HHHHHHHHHhhHHHhccCCeEEEe-----------------------CC---CChHHHHHHHHHCCCEEEEeEEE
Confidence 223446666665555544344442 01 1247888999999997443
Q ss_pred -ecceEEEE
Q 030565 165 -LGSRVYCI 172 (175)
Q Consensus 165 -~~~~~~~i 172 (175)
-..+.|.|
T Consensus 126 ~e~~~~YeI 134 (205)
T PF04816_consen 126 EENGRFYEI 134 (205)
T ss_dssp EETTEEEEE
T ss_pred eECCEEEEE
Confidence 25666655
No 224
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.37 E-value=3.4e-06 Score=59.60 Aligned_cols=105 Identities=15% Similarity=0.250 Sum_probs=77.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEeC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~ 85 (175)
.+|++||++|=|-|.....+....-.+-+.++..|..+ +..+..... -..++-.....|.+.++ .+++.||-|+--
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~-krmr~~gw~--ek~nViil~g~WeDvl~~L~d~~FDGI~yD 176 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVL-KRMRDWGWR--EKENVIILEGRWEDVLNTLPDKHFDGIYYD 176 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHH-HHHHhcccc--cccceEEEecchHhhhccccccCcceeEee
Confidence 57899999999999999888666556678899999887 554433322 11233344556777665 677889998864
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. +.+..+++..+.+.+.|+|||+|++-+.
T Consensus 177 T---y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 177 T---YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred c---hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 2 3355678889999999999999977665
No 225
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.36 E-value=2.9e-06 Score=68.83 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=49.4
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC---------CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccC-CCCC---CC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM---------NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW-GDAF---PI 74 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~---------~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~ 74 (175)
.+.+|||.+||+|.+...++... ..+++|+|+++..+ +.++.+....+. ........+. .+.. ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~-~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~ 108 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLL-KRAKKLLGEFAL-LEINVINFNSLSYVLLNIES 108 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHH-HHHHHHHhhcCC-CCceeeeccccccccccccc
Confidence 45689999999999998877644 14689999999887 666666554331 0111111110 0111 11
Q ss_pred CCCCccEEEeCCcc
Q 030565 75 PNPDWDLILASDIL 88 (175)
Q Consensus 75 ~~~~fD~i~~~~~l 88 (175)
..+.||+|+++..+
T Consensus 109 ~~~~fD~IIgNPPy 122 (524)
T TIGR02987 109 YLDLFDIVITNPPY 122 (524)
T ss_pred ccCcccEEEeCCCc
Confidence 23579999998775
No 226
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.36 E-value=2.7e-06 Score=63.32 Aligned_cols=105 Identities=13% Similarity=0.060 Sum_probs=69.7
Q ss_pred CcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCCCCCccEEEeC
Q 030565 10 RRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWDLILAS 85 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~i~~~ 85 (175)
++||=||.|.|..+..+.+.. -.+++.+|+++.++ +.+++..........-+.+.+..+|.. ....++||+|++-
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi-~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVI-ELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHH-HHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 699999999999999998875 35699999999998 676665554332111233333333322 2223489999984
Q ss_pred CcccCcccc-h--HHHHHHHHHHhhcCCCCceeec
Q 030565 86 DILLYVKQY-S--NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~-~--~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..= ...+ + --..+++.+.+.|+++|.++..
T Consensus 157 ~td--p~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 157 STD--PVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCC--CCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 332 1011 0 0148899999999999977776
No 227
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.34 E-value=1.5e-06 Score=65.98 Aligned_cols=108 Identities=15% Similarity=0.180 Sum_probs=65.3
Q ss_pred cCCCcEEEeCCCccHHHHHHHHh--------CCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---CC
Q 030565 7 IERRRCIELGSGTGALAIFLRKA--------MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---IP 75 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~--------~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 75 (175)
.++.+|+|-.||+|.+...+.+. ...+++|+|+++.++ ..++.+....+... ......+++.+. ..
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~-~la~~nl~l~~~~~--~~~~i~~~d~l~~~~~~ 121 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAV-ALAKLNLLLHGIDN--SNINIIQGDSLENDKFI 121 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHH-HHHHHHHHHTTHHC--BGCEEEES-TTTSHSCT
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHH-HHHHhhhhhhcccc--ccccccccccccccccc
Confidence 35678999999999999877663 356799999999886 55565655544411 111122333332 22
Q ss_pred -CCCccEEEeCCcccCc--cc----------------chHHHHHHHHHHhhcCCCCceeec
Q 030565 76 -NPDWDLILASDILLYV--KQ----------------YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 -~~~fD~i~~~~~l~~~--~~----------------~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...||+|+++..+-.. .. ...-..++..+.+.|+++|++.+.
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 4689999997665322 00 011235888999999999988776
No 228
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.33 E-value=9e-06 Score=68.12 Aligned_cols=111 Identities=16% Similarity=0.065 Sum_probs=72.4
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-------------------------------------------CCcEEEEeCChHHH
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM-------------------------------------------NLDITTSDYNDQEI 44 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-------------------------------------------~~~v~~~D~s~~~l 44 (175)
++..++|-+||+|.+.+++|... ..+++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 46889999999999998876520 12599999999998
Q ss_pred HHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEeCCcccCcc-cchHHHHHHHHHH---hhcCCCCceeeccc
Q 030565 45 EDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILASDILLYVK-QYSNLIKSLSVLL---KSYKPKDSQVGHLT 119 (175)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~~~l~~~~-~~~~~~~~l~~l~---~~l~pgG~~~~~~~ 119 (175)
+.++.|....+....+.....++.+... ...++||+|+++..+..-. ...++..+.+++. +...+|+..++.+.
T Consensus 270 -~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 270 -QAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred -HHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 8899999988885444444434333221 2235799999997742211 1123334444433 43448888877643
No 229
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.29 E-value=8.6e-07 Score=66.37 Aligned_cols=45 Identities=9% Similarity=0.013 Sum_probs=37.8
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHH
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNS 52 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~ 52 (175)
.++..++|.+||.|..+..+++..+ ..|+|+|.++.++ +.++...
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al-~~ak~~L 64 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAI-AAAKDRL 64 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHH-HHHHHhh
Confidence 4678999999999999999998863 6799999999998 5555444
No 230
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.23 E-value=2.2e-06 Score=59.98 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=55.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCccee-ec-cCCCCCCCCCCCccEEE
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI-KH-SWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~fD~i~ 83 (175)
++.+||||||++|.++..++++. ...|+|+|+.+... . .+.. .....+... .. ...+..+...+.||+|+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~--~--~~~~--~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP--L--QNVS--FIQGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TTEE--BTTGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccccc--c--ccee--eeecccchhhHHHhhhhhccccccCcceec
Confidence 35899999999999999998885 47899999988521 0 0000 000000000 00 00011111236899999
Q ss_pred eCCcccC--------cccchHHHHHHHHHHhhcCCCCceeec
Q 030565 84 ASDILLY--------VKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~--------~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+--+... .....-....+.-+.+.|+|||.+++-
T Consensus 97 ~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 97 SDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp E-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred cccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 8542210 111222345555566789999987774
No 231
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=7.8e-06 Score=59.70 Aligned_cols=105 Identities=14% Similarity=0.177 Sum_probs=73.5
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCC-CCCCCCCCCcc
Q 030565 4 REWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG-DAFPIPNPDWD 80 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~fD 80 (175)
.+..+|.+|||-|.|+|+++.++++..+ .+++.+|+-..-. +.+.+..+..+....+...+-++. ......+..+|
T Consensus 101 L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra-~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aD 179 (314)
T KOG2915|consen 101 LEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRA-EKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKAD 179 (314)
T ss_pred hcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHH-HHHHHHHHHhCCCcceEEEEeecccCCccccccccc
Confidence 4567899999999999999999999764 4799999977554 444445566666555555555553 33444466788
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCC-ceeec
Q 030565 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKD-SQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG-~~~~~ 117 (175)
.|+. +.+.+..++..++..+|.+| +++..
T Consensus 180 aVFL--------DlPaPw~AiPha~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 180 AVFL--------DLPAPWEAIPHAAKILKDEGGRLCSF 209 (314)
T ss_pred eEEE--------cCCChhhhhhhhHHHhhhcCceEEec
Confidence 8876 23344577788888888777 44444
No 232
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=3.9e-05 Score=59.29 Aligned_cols=116 Identities=15% Similarity=0.115 Sum_probs=75.5
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCC---CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCCCCc
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMN---LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDW 79 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~---~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~f 79 (175)
+..+|.+|||+.++.|.=+..+++... ..|+++|.++.-+ +.+..|+..-+... +..+..+-..... ...+.|
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl-~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRL-KRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHH-HHHHHHHHHcCCCc-eEEEecccccccccccccCcC
Confidence 345789999999999999988888753 4479999999877 67777777766621 1122222111111 112259
Q ss_pred cEEEeC------CcccCccc-------------chHHHHHHHHHHhhcCCCCceeeccccCC
Q 030565 80 DLILAS------DILLYVKQ-------------YSNLIKSLSVLLKSYKPKDSQVGHLTKNE 122 (175)
Q Consensus 80 D~i~~~------~~l~~~~~-------------~~~~~~~l~~l~~~l~pgG~~~~~~~~~~ 122 (175)
|.|+.- .++...++ ..-+.++|....+.+||||.++.++-...
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 999972 22211111 01257889999999999999999865543
No 233
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.17 E-value=1.2e-06 Score=64.20 Aligned_cols=109 Identities=16% Similarity=0.078 Sum_probs=65.5
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCCCC-CccEE
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNP-DWDLI 82 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~fD~i 82 (175)
+.++||=||.|.|..+..+.+.. ..+|+++|+++.++ +.+++..........-+.+.+..+|.. ....+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv-~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVV-ELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHH-HHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHH-HHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 57899999999999999997764 35799999999987 666654443211111123333333322 22233 89999
Q ss_pred EeCCcccCcccc-hHHHHHHHHHHhhcCCCCceeec
Q 030565 83 LASDILLYVKQY-SNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~-~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+.-..--..... ---...++.+.+.|+|+|.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 972211000000 01138899999999999977774
No 234
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.15 E-value=9.7e-06 Score=54.32 Aligned_cols=46 Identities=11% Similarity=0.206 Sum_probs=39.1
Q ss_pred cEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCC
Q 030565 11 RCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGI 57 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~ 57 (175)
+++|+|||.|..+..+++... .+|+++|+++.+. +.++++...++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~-~~l~~~~~~n~~ 47 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAY-EILEENVKLNNL 47 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHH-HHHHHHHHHcCC
Confidence 489999999999999988742 3699999999997 788888887765
No 235
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.14 E-value=4.1e-05 Score=58.90 Aligned_cols=81 Identities=14% Similarity=0.189 Sum_probs=61.0
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCC-----------------------------------------cEEEEeCChHH
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMNL-----------------------------------------DITTSDYNDQE 43 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~-----------------------------------------~v~~~D~s~~~ 43 (175)
++.++..++|--||+|.+.++.|.. +. .++|+|+++.+
T Consensus 188 gw~~~~pl~DPmCGSGTi~IEAAl~-~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~ 266 (381)
T COG0116 188 GWKPDEPLLDPMCGSGTILIEAALI-AANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRH 266 (381)
T ss_pred CCCCCCccccCCCCccHHHHHHHHh-ccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHH
Confidence 4556678999999999999998775 32 37799999999
Q ss_pred HHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030565 44 IEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 44 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
+ +.++.|.+.-+....+.+.+.+..+..+.. +.+|+||++...
T Consensus 267 i-~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~-~~~gvvI~NPPY 309 (381)
T COG0116 267 I-EGAKANARAAGVGDLIEFKQADATDLKEPL-EEYGVVISNPPY 309 (381)
T ss_pred H-HHHHHHHHhcCCCceEEEEEcchhhCCCCC-CcCCEEEeCCCc
Confidence 8 899999998888655555554443332222 689999998763
No 236
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.13 E-value=1.7e-06 Score=63.54 Aligned_cols=98 Identities=13% Similarity=0.142 Sum_probs=70.0
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
.|..++|+|||.|.... ....+.+++.|.+...+ ..+++. +. .......+-.+|+.+.+||.+++..+
T Consensus 45 ~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~-~~ak~~----~~----~~~~~ad~l~~p~~~~s~d~~lsiav 112 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLL-GGAKRS----GG----DNVCRADALKLPFREESFDAALSIAV 112 (293)
T ss_pred CcceeeecccCCcccCc---CCCcceeeecchhhhhc-cccccC----CC----ceeehhhhhcCCCCCCccccchhhhh
Confidence 47889999999987442 11245799999988765 332221 11 01222223345677889999999999
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++|+....-...+++++.|+++|||...+.
T Consensus 113 ihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 113 IHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 988887778889999999999999975554
No 237
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.12 E-value=3.4e-06 Score=65.04 Aligned_cols=52 Identities=19% Similarity=0.356 Sum_probs=41.7
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCccee
Q 030565 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI 64 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~ 64 (175)
.++||+-||+|.+++.+|+. ..+|+|+|+++.++ +.+++|...|++ .++.++
T Consensus 198 ~~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av-~~A~~Na~~N~i-~n~~f~ 249 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAV-EDARENAKLNGI-DNVEFI 249 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHH-HHHHHHHHHTT---SEEEE
T ss_pred CcEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHH-HHHHHHHHHcCC-CcceEE
Confidence 37999999999999999886 77899999999998 899999999888 334444
No 238
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=98.03 E-value=1.7e-06 Score=63.49 Aligned_cols=107 Identities=17% Similarity=0.141 Sum_probs=65.1
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHh--------hCCCCCCcceeec---cCCCCCCC
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST--------TNGITPALPHIKH---SWGDAFPI 74 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~--------~~~~~~~~~~~~~---~~~~~~~~ 74 (175)
...+++|||+|||+|..++.+.......+...|+|...++...-.+.. .+....-...+.- +| ....
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg--~~~~ 191 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDG--VFNH 191 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccc--hhhh
Confidence 346899999999999999998887568899999998775211000000 0000000000000 11 0001
Q ss_pred CC-CCccEEEeCCcccCcccchHHHHH-HHHHHhhcCCCCceeec
Q 030565 75 PN-PDWDLILASDILLYVKQYSNLIKS-LSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 75 ~~-~~fD~i~~~~~l~~~~~~~~~~~~-l~~l~~~l~pgG~~~~~ 117 (175)
.. -.||+|+++..+|.....+ .+ .......++++|.++++
T Consensus 192 t~~~~ydlIlsSetiy~~~~~~---~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 192 TERTHYDLILSSETIYSIDSLA---VLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ccccchhhhhhhhhhhCcchhh---hhHhhhhhhcCCccchhhhh
Confidence 11 2799999999996655444 33 55666778899988876
No 239
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=7.7e-05 Score=52.77 Aligned_cols=98 Identities=16% Similarity=0.156 Sum_probs=59.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCc--EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC------C-CCCC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLD--ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------P-IPNP 77 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~--v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~ 77 (175)
.++.+|+|||+-+|.++..+++..+.. |+++|+.|-... ..+..++.+..+.. . ....
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-------------~~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-------------PGVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-------------CCceEEeeeccCccHHHHHHHHcCCC
Confidence 457999999999999999999987554 999999883320 11234444432211 1 1223
Q ss_pred CccEEEeCCc--------ccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 78 DWDLILASDI--------LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~--------l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+|+|++-.. .-|.....--..++.-...+|+|||.+++-
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K 158 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK 158 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE
Confidence 4799986211 101111111234555666799999977774
No 240
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.89 E-value=0.0001 Score=56.11 Aligned_cols=86 Identities=13% Similarity=0.221 Sum_probs=53.7
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCC--CCCccEEE
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP--NPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~fD~i~ 83 (175)
..+|.++|||||++|.++..++++ |..|+++|..+ | ...+. .. +.+.+..++...+. .+.+|+++
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~-l-~~~L~----~~------~~V~h~~~d~fr~~p~~~~vDwvV 275 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP-M-AQSLM----DT------GQVEHLRADGFKFRPPRKNVDWLV 275 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh-c-CHhhh----CC------CCEEEEeccCcccCCCCCCCCEEE
Confidence 457899999999999999999887 67999999655 3 12221 11 12222222222221 56899998
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCC
Q 030565 84 ASDILLYVKQYSNLIKSLSVLLKSYKPK 111 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pg 111 (175)
+--+. .+.++.+-+.+.+..|
T Consensus 276 cDmve-------~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 276 CDMVE-------KPARVAELMAQWLVNG 296 (357)
T ss_pred Eeccc-------CHHHHHHHHHHHHhcC
Confidence 85442 2225566666666555
No 241
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.87 E-value=0.00014 Score=51.90 Aligned_cols=107 Identities=10% Similarity=0.072 Sum_probs=64.4
Q ss_pred CCccccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC--CCCCCC
Q 030565 2 HHREWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPNP 77 (175)
Q Consensus 2 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 77 (175)
++..+.+|.+||-||+.+|..-..++.-.+ ..|+|++.|+...++.+.-.....+. -.+--+-... ....-+
T Consensus 67 ~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NI----iPIl~DAr~P~~Y~~lv~ 142 (229)
T PF01269_consen 67 ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNI----IPILEDARHPEKYRMLVE 142 (229)
T ss_dssp S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTE----EEEES-TTSGGGGTTTS-
T ss_pred cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCce----eeeeccCCChHHhhcccc
Confidence 345567899999999999999988877554 35999999998765444433333233 1221111111 111234
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..|+|++--. ...+..-++.++...||+||.++++
T Consensus 143 ~VDvI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 143 MVDVIFQDVA-----QPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp -EEEEEEE-S-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccEEEecCC-----ChHHHHHHHHHHHhhccCCcEEEEE
Confidence 7888887422 2345556777888899999988885
No 242
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.86 E-value=1e-05 Score=57.36 Aligned_cols=100 Identities=16% Similarity=0.137 Sum_probs=71.8
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CCCCCCCCccEEEe
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AFPIPNPDWDLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~fD~i~~ 84 (175)
....|+|.-||.|..++.++.. +..|+++|++|.-+ ..++.|.+..|...++.+++.+|.+ .+.+....+|.|+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikI-a~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKI-ACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHH-HHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 4457999999999999888776 89999999999887 8889999999987777788777744 33455556778887
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCC
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKD 112 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG 112 (175)
+... ........-+-.|...++|.|
T Consensus 172 sppw---ggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 172 SPPW---GGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCCC---CCcchhhhhhhhhhhhcchhH
Confidence 6554 333333344444555555553
No 243
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.81 E-value=0.00013 Score=57.50 Aligned_cols=105 Identities=15% Similarity=0.162 Sum_probs=70.1
Q ss_pred cEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcccC
Q 030565 11 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLY 90 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~ 90 (175)
++|-+|||...++..+-+.+...|+.+|+|+-.+.....++. .... . -.......+.+.+++++||+|+.-..+-.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~--~-~~~~~~d~~~l~fedESFdiVIdkGtlDa 126 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERP--E-MQMVEMDMDQLVFEDESFDIVIDKGTLDA 126 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCc--c-eEEEEecchhccCCCcceeEEEecCcccc
Confidence 899999999999999877655669999999988744444443 2111 0 11122223456788999999998544421
Q ss_pred cccc-------hHHHHHHHHHHhhcCCCCceeeccc
Q 030565 91 VKQY-------SNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 91 ~~~~-------~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
.... ......+.++.|+++|||+++..+.
T Consensus 127 l~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 127 LFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 1111 1234678899999999998777643
No 244
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=3.4e-05 Score=61.04 Aligned_cols=60 Identities=15% Similarity=0.300 Sum_probs=49.8
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCC
Q 030565 4 REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG 69 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (175)
.....++.++|+-||||.+++.+|+. ...|+|+++++.++ +.++.|.+.|+. .+..+..+
T Consensus 379 ~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV-~dA~~nA~~Ngi----sNa~Fi~g 438 (534)
T KOG2187|consen 379 AGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAV-EDAEKNAQINGI----SNATFIVG 438 (534)
T ss_pred hCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhc-chhhhcchhcCc----cceeeeec
Confidence 34556788999999999999999886 78899999999998 888999999888 44444444
No 245
>PHA01634 hypothetical protein
Probab=97.77 E-value=0.0002 Score=46.60 Aligned_cols=50 Identities=10% Similarity=0.061 Sum_probs=42.2
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI 57 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~ 57 (175)
..+++|+|||++.|..+++++.+++..|+++++++... +..+.+...+..
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~-k~~een~k~nnI 76 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLR-KKWEEVCAYFNI 76 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHH-HHHHHHhhhhee
Confidence 47899999999999999999998788899999999875 666667666544
No 246
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.77 E-value=2.7e-05 Score=61.56 Aligned_cols=96 Identities=18% Similarity=0.293 Sum_probs=70.7
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCCh----HHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYND----QEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..|+|..+|.|.++..|.+. .|+.+..-+ +.+ ..+ ..-|+ --+.++|.+.++.-+.+||+|.++
T Consensus 367 RNVMDMnAg~GGFAAAL~~~---~VWVMNVVP~~~~ntL-~vI----ydRGL----IG~yhDWCE~fsTYPRTYDLlHA~ 434 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD---PVWVMNVVPVSGPNTL-PVI----YDRGL----IGVYHDWCEAFSTYPRTYDLLHAD 434 (506)
T ss_pred eeeeeecccccHHHHHhccC---CceEEEecccCCCCcc-hhh----hhccc----chhccchhhccCCCCcchhheehh
Confidence 45999999999999988653 355544433 222 111 12222 234688999999889999999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.++-.....-++..++-|+=|+|+|+|.+++-
T Consensus 435 ~lfs~~~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 435 GLFSLYKDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred hhhhhhcccccHHHHHHHhHhhcCCCceEEEe
Confidence 98866565667889999999999999988873
No 247
>PRK10742 putative methyltransferase; Provisional
Probab=97.76 E-value=0.00024 Score=51.77 Aligned_cols=81 Identities=9% Similarity=0.056 Sum_probs=51.8
Q ss_pred ccCCC--cEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhC----CCCC-CcceeeccCCCC---CCCC
Q 030565 6 WIERR--RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN----GITP-ALPHIKHSWGDA---FPIP 75 (175)
Q Consensus 6 ~~~~~--~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~----~~~~-~~~~~~~~~~~~---~~~~ 75 (175)
+.+|. +|||+=+|+|..++.++.. |+.|+++|.++... ..++.+.+.. .... ....+.+..++. +.-.
T Consensus 84 lk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~va-alL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~ 161 (250)
T PRK10742 84 IKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVA-ALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI 161 (250)
T ss_pred CCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC
Confidence 34566 7999999999999999988 77799999999764 4445444442 1111 002233333332 2222
Q ss_pred CCCccEEEeCCcc
Q 030565 76 NPDWDLILASDIL 88 (175)
Q Consensus 76 ~~~fD~i~~~~~l 88 (175)
..+||+|+.-.++
T Consensus 162 ~~~fDVVYlDPMf 174 (250)
T PRK10742 162 TPRPQVVYLDPMF 174 (250)
T ss_pred CCCCcEEEECCCC
Confidence 3479999986665
No 248
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.76 E-value=7.2e-05 Score=55.46 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=38.8
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHh
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST 53 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~ 53 (175)
..++..|||+|.|+|.++..+++. +.+|+++|+++..+ +.++....
T Consensus 28 ~~~~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~-~~L~~~~~ 73 (262)
T PF00398_consen 28 LSEGDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLA-KHLKERFA 73 (262)
T ss_dssp CGTTSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHH-HHHHHHCT
T ss_pred CCCCCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHH-HHHHHHhh
Confidence 347889999999999999999888 58999999999886 66665443
No 249
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.75 E-value=6.4e-05 Score=50.02 Aligned_cols=86 Identities=14% Similarity=0.059 Sum_probs=53.5
Q ss_pred cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCC-CCccEEEeCCcccCc-------ccchHHHHHHHHH
Q 030565 33 DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN-PDWDLILASDILLYV-------KQYSNLIKSLSVL 104 (175)
Q Consensus 33 ~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~fD~i~~~~~l~~~-------~~~~~~~~~l~~l 104 (175)
+|+|+|+.++++ ++.+......+...++..+.-+.......-+ +++|+++.+--. -. ...+.-..+++.+
T Consensus 1 kVyaFDIQ~~Ai-~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGY-LPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAI-ENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGY-LPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHH-HHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB--CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHH-HHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCc-CCCCCCCCCcCcHHHHHHHHHH
Confidence 589999999998 7888888877775555555444333333333 489999986332 11 1123456889999
Q ss_pred HhhcCCCCceeecccc
Q 030565 105 LKSYKPKDSQVGHLTK 120 (175)
Q Consensus 105 ~~~l~pgG~~~~~~~~ 120 (175)
.+.|+|||.+.++.|.
T Consensus 79 l~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 79 LELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHEEEEEEEEEEE--
T ss_pred HHhhccCCEEEEEEeC
Confidence 9999999988887554
No 250
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.75 E-value=0.00093 Score=48.40 Aligned_cols=133 Identities=16% Similarity=0.175 Sum_probs=73.3
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHH-hCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-CCCCccE
Q 030565 4 REWIERRRCIELGSGTGALAIFLRK-AMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDL 81 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~-~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~ 81 (175)
+..+.|++||=+|=+. ..|+.++. ....+|+.+|+++..+ +.+++.....++ .+....++..+.+|. ..++||+
T Consensus 40 ~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll-~fI~~~a~~~gl--~i~~~~~DlR~~LP~~~~~~fD~ 115 (243)
T PF01861_consen 40 RGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLL-DFINRVAEEEGL--PIEAVHYDLRDPLPEELRGKFDV 115 (243)
T ss_dssp TT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHH-HHHHHHHHHHT----EEEE---TTS---TTTSS-BSE
T ss_pred cCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHH-HHHHHHHHHcCC--ceEEEEecccccCCHHHhcCCCE
Confidence 3456899999999543 33344333 3367899999999998 888888888777 367777777777663 3579999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCc-eeeccccCCCCCCCCCCCCCceEeeeeccC-CCcchhHHHHHHHHcC
Q 030565 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDS-QVGHLTKNEQGEGTEGLPWPAFLMSWRRRI-GKEDETIFFTSCENAG 159 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g 159 (175)
++.-... ..+.+.-++++....||..|. .++. +.+.. +..-...+.+.+-+.|
T Consensus 116 f~TDPPy----T~~G~~LFlsRgi~~Lk~~g~~gy~~---------------------~~~~~~s~~~~~~~Q~~l~~~g 170 (243)
T PF01861_consen 116 FFTDPPY----TPEGLKLFLSRGIEALKGEGCAGYFG---------------------FTHKEASPDKWLEVQRFLLEMG 170 (243)
T ss_dssp EEE---S----SHHHHHHHHHHHHHTB-STT-EEEEE---------------------E-TTT--HHHHHHHHHHHHTS-
T ss_pred EEeCCCC----CHHHHHHHHHHHHHHhCCCCceEEEE---------------------EecCcCcHHHHHHHHHHHHHCC
Confidence 9997663 345677899999999997662 2221 11111 1111245677777888
Q ss_pred CeeEEe
Q 030565 160 LEVKHL 165 (175)
Q Consensus 160 ~~~~~~ 165 (175)
|.++++
T Consensus 171 l~i~di 176 (243)
T PF01861_consen 171 LVITDI 176 (243)
T ss_dssp -EEEEE
T ss_pred cCHHHH
Confidence 887766
No 251
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.73 E-value=4.7e-05 Score=56.01 Aligned_cols=109 Identities=15% Similarity=0.120 Sum_probs=62.1
Q ss_pred CcEEEeCCC--ccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-----CCCCcc
Q 030565 10 RRCIELGSG--TGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-----PNPDWD 80 (175)
Q Consensus 10 ~~vLDlGcG--~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~fD 80 (175)
...|||||| |-.....+|+.. .++|+-+|.+|-.+ .+.+..+..+.. .....+..+..+.... -.+.+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~-ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVL-AHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHH-HCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHH-HHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 459999999 344556666644 67899999999775 554444333221 1234455444321100 011222
Q ss_pred -----EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030565 81 -----LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 81 -----~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
.+++..+++|..+.++...+++.+...|.||+.++++...
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 6778888888888788999999999999999999998443
No 252
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.73 E-value=0.00013 Score=54.17 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=55.5
Q ss_pred CCcEEEeCCCc-cHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHh-hCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 9 RRRCIELGSGT-GALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNST-TNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 9 ~~~vLDlGcG~-G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
.++|+=||||+ -..++.+++.. +..|+++|+++..+ +..++-.. ..++..++..+..+..+. ...-..||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~-~~a~~lv~~~~~L~~~m~f~~~d~~~~-~~dl~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEAN-ELARRLVASDLGLSKRMSFITADVLDV-TYDLKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHH-HHHHHHHH---HH-SSEEEEES-GGGG--GG----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHH-HHHHHHHhhcccccCCeEEEecchhcc-ccccccCCEEEE
Confidence 45999999997 55567777643 56799999999887 55544444 334444455554443221 222357999998
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+...... .++-.+++.++.+.++||..+++-
T Consensus 199 AalVg~~--~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 199 AALVGMD--AEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -TT-S------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhhcccc--cchHHHHHHHHHhhCCCCcEEEEe
Confidence 8776211 224459999999999999876664
No 253
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.73 E-value=0.0043 Score=44.32 Aligned_cols=93 Identities=17% Similarity=0.234 Sum_probs=66.7
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCC-CccEEEe
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNP-DWDLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~fD~i~~ 84 (175)
.+.++.|+||-.|.+..++.+.. ...+++.|+++.-+ +.+.++...+++. +.+....++.++ +..+ .+|+|+.
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl-~~a~~~v~~~~l~---~~i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPL-ESAIRNVKKNNLS---ERIDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHH-HHHHHHHHhcCCc---ceEEEeccCCccccCccCCcCEEEE
Confidence 46679999999999999988864 45699999999998 7778888888874 444555555554 3333 7999888
Q ss_pred CCcccCcccchHHHHHHHHHHhhcC
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYK 109 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~ 109 (175)
+.+= . ..+..++++-...++
T Consensus 92 AGMG---G--~lI~~ILee~~~~l~ 111 (226)
T COG2384 92 AGMG---G--TLIREILEEGKEKLK 111 (226)
T ss_pred eCCc---H--HHHHHHHHHhhhhhc
Confidence 7663 1 234466666666555
No 254
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.70 E-value=5.2e-05 Score=56.81 Aligned_cols=114 Identities=16% Similarity=0.137 Sum_probs=73.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEE
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i 82 (175)
..++.+|||+.++.|.=+..+++... ..|++.|+++.-+ ..++.+.+..+... +.....+.....+ .....||.|
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl-~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRL-KRLKENLKRLGVFN-VIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHH-HHHHHHHHHTT-SS-EEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHH-HHHHHHHHhcCCce-EEEEeeccccccccccccccchh
Confidence 34678899999999999999988764 5799999999887 77777777766621 1111111111111 122369999
Q ss_pred EeCCc------ccCccc---------c----hHHHHHHHHHHhhc----CCCCceeeccccC
Q 030565 83 LASDI------LLYVKQ---------Y----SNLIKSLSVLLKSY----KPKDSQVGHLTKN 121 (175)
Q Consensus 83 ~~~~~------l~~~~~---------~----~~~~~~l~~l~~~l----~pgG~~~~~~~~~ 121 (175)
+.-.. +...++ . .-+.++++.+.+.+ ||||+++.++-..
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 97211 111111 0 12467888999999 9999999984433
No 255
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.0019 Score=45.54 Aligned_cols=105 Identities=11% Similarity=0.022 Sum_probs=64.9
Q ss_pred CccccCCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC--CCCCCCCc
Q 030565 3 HREWIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPNPDW 79 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f 79 (175)
+-.+.+|++||=||+-+|.....++.-.+ ..+++++.|+.+.++.+.-.....+. -.+..+-... ....-+..
T Consensus 71 ~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni----~PIL~DA~~P~~Y~~~Ve~V 146 (231)
T COG1889 71 NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNI----IPILEDARKPEKYRHLVEKV 146 (231)
T ss_pred cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCc----eeeecccCCcHHhhhhcccc
Confidence 44567899999999999999988877655 45999999998876655544444333 1121111000 01112345
Q ss_pred cEEEeCCcccCcccchHH-HHHHHHHHhhcCCCCceeec
Q 030565 80 DLILASDILLYVKQYSNL-IKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~-~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|+. .-..+++ .-+..++..-||++|.++++
T Consensus 147 Dviy~------DVAQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 147 DVIYQ------DVAQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cEEEE------ecCCchHHHHHHHHHHHhcccCCeEEEE
Confidence 55554 2333333 34556777889999977775
No 256
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.65 E-value=0.001 Score=49.82 Aligned_cols=143 Identities=16% Similarity=0.180 Sum_probs=82.4
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHH-HHHHHHhhC--CC---------------CCCcceeeccC-
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIED-NIAYNSTTN--GI---------------TPALPHIKHSW- 68 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~-~~~~~~~~~--~~---------------~~~~~~~~~~~- 68 (175)
..-+||==|||.|+++..++.. |...-|-+.|--|+.- ..-.|.... .. ..++..+.+..
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~-G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACL-GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred cCceEEecCCCchhHHHHHHHh-cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 4567888999999999999776 7777777888877531 111111110 00 01111111110
Q ss_pred ----------------CCCCC-----CCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec---cccCCCC
Q 030565 69 ----------------GDAFP-----IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH---LTKNEQG 124 (175)
Q Consensus 69 ----------------~~~~~-----~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~---~~~~~~~ 124 (175)
||..+ -..+.||+|+... +...-.++...++.+..+|||||..+=. .|...+.
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf---FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~ 305 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF---FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDT 305 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEE---EeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCC
Confidence 11111 0123699998874 4466778999999999999999955443 1111111
Q ss_pred CCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030565 125 EGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
... .+... -..+.+++...++..||+++.-
T Consensus 306 ~g~----~~~~s-------iEls~edl~~v~~~~GF~~~ke 335 (369)
T KOG2798|consen 306 HGV----ENEMS-------IELSLEDLKRVASHRGFEVEKE 335 (369)
T ss_pred CCC----ccccc-------ccccHHHHHHHHHhcCcEEEEe
Confidence 110 00000 0123588999999999997764
No 257
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.61 E-value=0.00067 Score=51.93 Aligned_cols=105 Identities=18% Similarity=0.156 Sum_probs=64.7
Q ss_pred CCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHh---hCCCCCCcceeeccCCCCCC---CCCCCccE
Q 030565 9 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNST---TNGITPALPHIKHSWGDAFP---IPNPDWDL 81 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~fD~ 81 (175)
-.++|=+|.|.|.-..++.+.. -.+++-+|.+|+|+ +..+.+.. .|.-.-.-+.++....|... ...+.||+
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~mi-ela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMI-ELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHH-HHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 3679999999999999998876 45799999999998 44442211 11111122233322233322 23458999
Q ss_pred EEeCCcccCcccchHH-----HHHHHHHHhhcCCCCceeec
Q 030565 82 ILASDILLYVKQYSNL-----IKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~-----~~~l~~l~~~l~pgG~~~~~ 117 (175)
||.--. .++.+.+ .++..-+.+.++++|.+++.
T Consensus 369 vIVDl~---DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 369 VIVDLP---DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred EEEeCC---CCCCcchhhhhhHHHHHHHHHhcCcCceEEEe
Confidence 987311 1222221 24555677889999988886
No 258
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.58 E-value=0.00042 Score=52.89 Aligned_cols=99 Identities=17% Similarity=0.133 Sum_probs=66.1
Q ss_pred CCccccCCCcEEEeCCC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCcc
Q 030565 2 HHREWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWD 80 (175)
Q Consensus 2 ~~~~~~~~~~vLDlGcG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 80 (175)
++....+|++|+=.|+| .|..+..+|+..+.+|+++|.|++.. +.+++-.... .+.....+..+.-.+.||
T Consensus 160 k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~-e~a~~lGAd~-------~i~~~~~~~~~~~~~~~d 231 (339)
T COG1064 160 KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKL-ELAKKLGADH-------VINSSDSDALEAVKEIAD 231 (339)
T ss_pred hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHH-HHHHHhCCcE-------EEEcCCchhhHHhHhhCc
Confidence 34456678999999886 68888999998899999999999876 4444322221 111111111121122499
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030565 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+|+..-. ...+....+.|+++|++++.-
T Consensus 232 ~ii~tv~----------~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 232 AIIDTVG----------PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred EEEECCC----------hhhHHHHHHHHhcCCEEEEEC
Confidence 9987422 267788999999999999883
No 259
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.56 E-value=0.0038 Score=46.68 Aligned_cols=70 Identities=20% Similarity=0.151 Sum_probs=45.8
Q ss_pred cEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCC-CCCccEEEeCCcc
Q 030565 11 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP-NPDWDLILASDIL 88 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~i~~~~~l 88 (175)
+++|+-||.|.++.-+.+.+...+.++|+++..+ +..+.|...... ..+..+..... .+.+|++++....
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~-~~~~~N~~~~~~-------~~Di~~~~~~~~~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAA-ETYEANFPNKLI-------EGDITKIDEKDFIPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHH-HHHHHhCCCCCc-------cCccccCchhhcCCCCCEEEeCCCC
Confidence 6999999999999988776444489999999887 666665432111 11111111111 3469999987654
No 260
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00022 Score=54.18 Aligned_cols=116 Identities=13% Similarity=0.035 Sum_probs=66.6
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccC-CCCCCCC-CCCcc
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW-GDAFPIP-NPDWD 80 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~fD 80 (175)
+.++.++|||+|.|+|.-...+...+ -..++.++-|+.. .+... .++.+......+.-.-++ .+.++++ ...|+
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~l-rkV~~-tl~~nv~t~~td~r~s~vt~dRl~lp~ad~yt 187 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPAL-RKVGD-TLAENVSTEKTDWRASDVTEDRLSLPAADLYT 187 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHH-HHHHH-HHHhhcccccCCCCCCccchhccCCCccceee
Confidence 34567889999999887655543322 1236666666633 22222 222222211111111111 1223332 34788
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCC
Q 030565 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNE 122 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~ 122 (175)
+++..+-+-+......+...++.+...+.|||.++++..+..
T Consensus 188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 888877664555555566789999999999999999854443
No 261
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.39 E-value=1.3e-05 Score=50.95 Aligned_cols=95 Identities=21% Similarity=0.312 Sum_probs=34.4
Q ss_pred EEeCCCccHHHHHHHHhC--C--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---C-CCCCCccEEEe
Q 030565 13 IELGSGTGALAIFLRKAM--N--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---P-IPNPDWDLILA 84 (175)
Q Consensus 13 LDlGcG~G~~~~~l~~~~--~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~fD~i~~ 84 (175)
||+|+..|..+..+++.. . .+++++|..+. . +..++..+..+...+ +++..++.. + +..++||+++.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~-~~~~~~~~~~~~~~~---~~~~~g~s~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-D-EQAQEIIKKAGLSDR---VEFIQGDSPDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BT---EEEEES-THHHHHHHHH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-c-cccchhhhhcCCCCe---EEEEEcCcHHHHHHcCCCCEEEEEE
Confidence 699999999888777643 2 37999999984 1 222222222222222 233333221 1 22468999887
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
-.. +..+....-++.+.+.++|||.+++
T Consensus 76 Dg~----H~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 76 DGD----HSYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp ES-------HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCC----CCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 432 2234555778889999999997765
No 262
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.38 E-value=0.00025 Score=55.20 Aligned_cols=100 Identities=20% Similarity=0.172 Sum_probs=68.6
Q ss_pred CCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC---CCCCCCCccEEE
Q 030565 9 RRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FPIPNPDWDLIL 83 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~fD~i~ 83 (175)
+-+|||.=||+|.=++.++++. ..+|++-|+|++++ +.+++|...|+.... .+.....|. +......||+|=
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~-~~i~~N~~~N~~~~~--~~~v~~~DAn~ll~~~~~~fD~ID 126 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAV-ELIKRNLELNGLEDE--RIEVSNMDANVLLYSRQERFDVID 126 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHH-HHHHHHHHHCT-SGC--CEEEEES-HHHHHCHSTT-EEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHH-HHHHHhHhhccccCc--eEEEehhhHHHHhhhccccCCEEE
Confidence 4589999999999999998984 35799999999997 889999999988541 222222221 122456899886
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030565 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
. |.+ .....++..+.+.++.||.++++.
T Consensus 127 l-DPf------GSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 127 L-DPF------GSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp E---S------S--HHHHHHHHHHEEEEEEEEEEE
T ss_pred e-CCC------CCccHhHHHHHHHhhcCCEEEEec
Confidence 5 222 233489999999999999999983
No 263
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.37 E-value=0.00059 Score=53.38 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=46.8
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceee
Q 030565 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK 65 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~ 65 (175)
.-|||||.|||.+++.++..++..|+|++.=-.|. +.+.+....++.+..+..|.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~-d~arkI~~kng~SdkI~vIn 122 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMV-DLARKIMHKNGMSDKINVIN 122 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHH-HHHHHHHhcCCCccceeeec
Confidence 45899999999999999999878899999988897 88888888888877666664
No 264
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.31 E-value=0.00074 Score=47.59 Aligned_cols=107 Identities=14% Similarity=0.058 Sum_probs=58.9
Q ss_pred CcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCC---CCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 10 RRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGIT---PALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
-.+.|||||.|.+.+.++..+ ..-+.|++|-.... ++.+..++.-... ...+++..--.+.+.+.++.|.---.+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVs-dYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVS-DYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHH-HHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 458999999999999998876 34489999988764 6655554442211 112222222222222222222222222
Q ss_pred CcccCcccchH----------HHHHHHHHHhhcCCCCceeec
Q 030565 86 DILLYVKQYSN----------LIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~----------~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-+++..++..- -..++.+..=++++||.++..
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yti 182 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTI 182 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEE
Confidence 22211121110 025667777889999988876
No 265
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.29 E-value=0.0024 Score=51.59 Aligned_cols=101 Identities=14% Similarity=0.219 Sum_probs=65.6
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC--------------
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-------------- 70 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 70 (175)
..++++|+=+|||. |..++..++..|..|+++|.+++.+ +.++.. +. ..+..+..+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rl-e~aesl----GA----~~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVA-EQVESM----GA----EFLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHc----CC----eEEEeccccccccccchhhhcch
Confidence 45789999999996 9999999998899999999999776 443321 11 111111000
Q ss_pred CC------CCCC--CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030565 71 AF------PIPN--PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 71 ~~------~~~~--~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+. .+.+ +.+|+|+..... +.......+.++..+.+||||+++..-
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag~---pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTALI---PGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECCCC---CcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 00 0011 468999987654 322112233599999999999887763
No 266
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.26 E-value=5.1e-05 Score=50.97 Aligned_cols=51 Identities=14% Similarity=0.078 Sum_probs=43.3
Q ss_pred CCCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCC
Q 030565 72 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQ 123 (175)
Q Consensus 72 ~~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~ 123 (175)
..|.+++.|+|++.+++.|.. .+....++++.++.|||||.+-++.++..-
T Consensus 41 ~~F~dns~d~iyaeHvlEHlt-~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 41 SMFEDNSVDAIYAEHVLEHLT-YDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred ccCCCcchHHHHHHHHHHHHh-HHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 567889999999999985554 577889999999999999999999777653
No 267
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.20 E-value=0.0038 Score=47.12 Aligned_cols=102 Identities=15% Similarity=0.160 Sum_probs=63.8
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceee--ccCCCCC--CCCCCC
Q 030565 5 EWIERRRCIELGSGT-GALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK--HSWGDAF--PIPNPD 78 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~ 78 (175)
....|.+||=+|+|+ |..+...|+..| .+|+.+|.++.-+ +.+++-... .. .+...-. .+..+.. ..-...
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rl-e~Ak~~Ga~-~~-~~~~~~~~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRL-ELAKKFGAT-VT-DPSSHKSSPQELAELVEKALGKKQ 242 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHH-HHHHHhCCe-EE-eeccccccHHHHHHHHHhhccccC
Confidence 455789999999997 999998888775 5699999999887 555542111 11 0000000 0000000 011235
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030565 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+|+.+...-+ . ..++.....++++|+++++.
T Consensus 243 ~d~~~dCsG~---~------~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 243 PDVTFDCSGA---E------VTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred CCeEEEccCc---h------HHHHHHHHHhccCCEEEEec
Confidence 8888876544 1 66777788999999977763
No 268
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.14 E-value=0.0044 Score=48.34 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=72.9
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCCCCcc
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWD 80 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD 80 (175)
+..+|-||||..+-+|.=+.++|.... ..|+|.|.+.+-+ +.+..|++..+....+.. .++ +..++ ...++||
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~-~~l~~n~~rlGv~ntiv~-n~D-~~ef~~~~~~~~fD 314 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRL-KSLKANLHRLGVTNTIVS-NYD-GREFPEKEFPGSFD 314 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHH-HHHHHHHHHhCCCceEEE-ccC-cccccccccCcccc
Confidence 445789999999999988888877653 3599999999887 777888887776321111 111 11111 1233899
Q ss_pred EEEeCC------cccCccc-------------chHHHHHHHHHHhhcCCCCceeecc
Q 030565 81 LILASD------ILLYVKQ-------------YSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 81 ~i~~~~------~l~~~~~-------------~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
-|+.-. ++.-..+ ..-+.++|-.+...+++||.++.++
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 998622 2211110 1224678888889999999998883
No 269
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.0027 Score=48.74 Aligned_cols=104 Identities=16% Similarity=0.112 Sum_probs=72.2
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030565 9 RRRCIELGSGTGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
..+|||-=||+|.=++.++.+.+. +|+.-|+||.++ +.++.|...|.. .....+.-+-...+......||+|=. |.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Av-elik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDi-DP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAV-ELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDI-DP 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHH-HHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEec-CC
Confidence 678999999999999999998766 799999999998 888889888722 11122211110111222357887644 33
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030565 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
+ .++ ..++....+.++.+|.+.++..+.
T Consensus 130 F---GSP---aPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 130 F---GSP---APFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred C---CCC---chHHHHHHHHhhcCCEEEEEeccc
Confidence 3 322 388888999999999999884443
No 270
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=97.01 E-value=0.0057 Score=47.01 Aligned_cols=96 Identities=15% Similarity=0.206 Sum_probs=58.3
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 7 IERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
.++++||=.|||. |..+..+++..+. +|+++|.+++.+ +.+++. +....+..-..+..+ .....+.+|+|+-
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~-~~a~~l----Ga~~vi~~~~~~~~~-~~~~~g~~D~vid 241 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSL-SLAREM----GADKLVNPQNDDLDH-YKAEKGYFDVSFE 241 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHH-HHHHHc----CCcEEecCCcccHHH-HhccCCCCCEEEE
Confidence 4678899899875 8888888888777 599999998775 443321 110000000000001 1111235898876
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..- .+ ..++...+.++++|+++..
T Consensus 242 ~~G------~~---~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 242 VSG------HP---SSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred CCC------CH---HHHHHHHHHhhcCCEEEEE
Confidence 422 12 4677788899999988876
No 271
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.98 E-value=0.0085 Score=46.77 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=63.5
Q ss_pred CCcEEEeCCCccHHHHHHHHhC----------------CCcEEEEeCChHHHH---HHHHHHHhh----CC----CCCCc
Q 030565 9 RRRCIELGSGTGALAIFLRKAM----------------NLDITTSDYNDQEIE---DNIAYNSTT----NG----ITPAL 61 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~----------------~~~v~~~D~s~~~l~---~~~~~~~~~----~~----~~~~~ 61 (175)
.-+|+|+|||+|.+++.+.... ..+|..-|...+... ..+...... .. .....
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 4579999999998885442211 245788888765431 221110000 00 00010
Q ss_pred ceeeccCCCCCC--CCCCCccEEEeCCcccCcccc-h-----------------------------------HHHHHHHH
Q 030565 62 PHIKHSWGDAFP--IPNPDWDLILASDILLYVKQY-S-----------------------------------NLIKSLSV 103 (175)
Q Consensus 62 ~~~~~~~~~~~~--~~~~~fD~i~~~~~l~~~~~~-~-----------------------------------~~~~~l~~ 103 (175)
.++....+.... ++.++.++++++.++ ||.+. + ++..+|+.
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~sl-HWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSL-HWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccc-eecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 122222233322 677899999999998 55542 1 23445555
Q ss_pred HHhhcCCCCceeeccccCC
Q 030565 104 LLKSYKPKDSQVGHLTKNE 122 (175)
Q Consensus 104 l~~~l~pgG~~~~~~~~~~ 122 (175)
-.+-|.|||+++++..+..
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHHhccCcEEEEEEecCC
Confidence 5677899999999965543
No 272
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=96.86 E-value=0.013 Score=44.88 Aligned_cols=90 Identities=11% Similarity=-0.055 Sum_probs=58.1
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..+|.+||=.|+|. |..+..+++..+.+|++++.+++.. +.+++. +.. .+ ++..+ ...+.+|+++.
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~-~~a~~~----Ga~----~v-i~~~~---~~~~~~d~~i~ 229 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAAR-RLALAL----GAA----SA-GGAYD---TPPEPLDAAIL 229 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHH-HHHHHh----CCc----ee-ccccc---cCcccceEEEE
Confidence 44688999999864 7777888888888999999988765 443322 110 00 00001 11235787665
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.... . ..+....+.++++|++++.
T Consensus 230 ~~~~------~---~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 230 FAPA------G---GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred CCCc------H---HHHHHHHHhhCCCcEEEEE
Confidence 4332 2 5678888999999998775
No 273
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.0065 Score=40.78 Aligned_cols=98 Identities=11% Similarity=0.129 Sum_probs=60.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCC--CccEEEeC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP--DWDLILAS 85 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~fD~i~~~ 85 (175)
+.++.+|||+|.|+.-+..++++...-+|++.++..+ .+.+......++.....+..- +...+.-+ .+-+|+..
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLV-aysrl~a~R~g~~k~trf~Rk---dlwK~dl~dy~~vviFga 147 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLV-AYSRLHAWRAGCAKSTRFRRK---DLWKVDLRDYRNVVIFGA 147 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHH-HHHHHHHHHHhcccchhhhhh---hhhhccccccceEEEeeh
Confidence 4467999999999999999888557899999999987 676666666666433333322 22222222 23344443
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..+ +..+-.++..-+..+..++..
T Consensus 148 es~--------m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 148 ESV--------MPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred HHH--------HhhhHHHHHhhCcCCCeEEEE
Confidence 332 224445555566666655543
No 274
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.78 E-value=0.005 Score=47.32 Aligned_cols=114 Identities=11% Similarity=0.090 Sum_probs=59.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-----------C------CcEEEEeCChHHH---HHHHHHHHhhCCCCCCcceeecc
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM-----------N------LDITTSDYNDQEI---EDNIAYNSTTNGITPALPHIKHS 67 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-----------~------~~v~~~D~s~~~l---~~~~~~~~~~~~~~~~~~~~~~~ 67 (175)
+.-+|+|+||-+|..++.+.+.. + .+|+.-|...+.. -..+......... ...-++...
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~-~~~~f~~gv 94 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK-FRNYFVSGV 94 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH-TTSEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC-CceEEEEec
Confidence 34679999999999997544322 1 3689999977542 1222111100000 001122222
Q ss_pred CCCCCC--CCCCCccEEEeCCcccCcccc-------------------------------------hHHHHHHHHHHhhc
Q 030565 68 WGDAFP--IPNPDWDLILASDILLYVKQY-------------------------------------SNLIKSLSVLLKSY 108 (175)
Q Consensus 68 ~~~~~~--~~~~~fD~i~~~~~l~~~~~~-------------------------------------~~~~~~l~~l~~~l 108 (175)
.+.... +++++.|+++++.++ ||.+. .++..+|+.-.+-|
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~al-HWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYAL-HWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-T-TB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred CchhhhccCCCCceEEEEEechh-hhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 233322 678899999998888 44431 12445556666788
Q ss_pred CCCCceeeccccCCC
Q 030565 109 KPKDSQVGHLTKNEQ 123 (175)
Q Consensus 109 ~pgG~~~~~~~~~~~ 123 (175)
+|||+++++..+...
T Consensus 174 v~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEE-ST
T ss_pred ccCcEEEEEEeeccc
Confidence 999999999554433
No 275
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=96.76 E-value=0.035 Score=42.05 Aligned_cols=85 Identities=18% Similarity=0.136 Sum_probs=54.6
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 8 ERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
+++++|=+|||. |.++..+++..+.+ |.++|.++..+ +.+.. . .. + +..+. ....+|+|+-.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl-~~a~~---~-~~------i--~~~~~---~~~g~Dvvid~ 207 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRR-DGATG---Y-EV------L--DPEKD---PRRDYRAIYDA 207 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH-Hhhhh---c-cc------c--Chhhc---cCCCCCEEEEC
Confidence 567888889875 88888888887876 67788877654 22221 0 00 0 00000 12468988864
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-- .+ ..++...+.++++|++++.
T Consensus 208 ~G------~~---~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 208 SG------DP---SLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred CC------CH---HHHHHHHHhhhcCcEEEEE
Confidence 22 12 4677888999999988875
No 276
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.70 E-value=0.0068 Score=43.99 Aligned_cols=108 Identities=12% Similarity=0.106 Sum_probs=60.0
Q ss_pred CCccccCCCcEEEeCCCccHHHHHHHHhCCCc--EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCc
Q 030565 2 HHREWIERRRCIELGSGTGALAIFLRKAMNLD--ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDW 79 (175)
Q Consensus 2 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~--v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 79 (175)
++..+.+|.+||=||+++|..-...+.-.+.+ |++++.|+..=++.+ +...... ..++.+ ++-..+...-
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~--nmAkkRt-NiiPIi-----EDArhP~KYR 221 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLI--NMAKKRT-NIIPII-----EDARHPAKYR 221 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHH--HHhhccC-Cceeee-----ccCCCchhee
Confidence 45567789999999999999887776665554 999999885421111 1111111 112222 1111111111
Q ss_pred cEEEeCCcccCcccchHHHHHH-HHHHhhcCCCCceeec
Q 030565 80 DLILASDILLYVKQYSNLIKSL-SVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l-~~l~~~l~pgG~~~~~ 117 (175)
=+|-+.+++|.....+++.+++ -+...-||+||.|++.
T Consensus 222 mlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 222 MLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence 1233344443333344443443 3566789999999887
No 277
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.67 E-value=0.0013 Score=49.04 Aligned_cols=95 Identities=16% Similarity=0.226 Sum_probs=62.2
Q ss_pred CCcEEEeCCCccHHHH-HHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030565 9 RRRCIELGSGTGALAI-FLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~-~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
+..|.|+-+|.|.+++ ++...++..|.|+|++|..+ ++++++.+.|+...+...+..+. ..+-++..-|-|...-.
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~sv-EaLrR~~~~N~V~~r~~i~~gd~--R~~~~~~~AdrVnLGLl 271 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSV-EALRRNAEANNVMDRCRITEGDN--RNPKPRLRADRVNLGLL 271 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHH-HHHHHHHHhcchHHHHHhhhccc--cccCccccchheeeccc
Confidence 5679999999999998 77777677899999999998 89999999887633222222111 12234456676665422
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCc
Q 030565 88 LLYVKQYSNLIKSLSVLLKSYKPKDS 113 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~ 113 (175)
++-+ +-...++++|+|.|-
T Consensus 272 ----PSse---~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 272 ----PSSE---QGWPTAIKALKPEGG 290 (351)
T ss_pred ----cccc---cchHHHHHHhhhcCC
Confidence 2222 333345566666654
No 278
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.66 E-value=0.0019 Score=40.77 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=27.5
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCCh
Q 030565 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYND 41 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~ 41 (175)
.....|||||+|.+...|.++ |..=+|+|.-.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~E-Gy~G~GiD~R~ 90 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSE-GYPGWGIDARR 90 (112)
T ss_pred CCceEEccCCchHHHHHHHhC-CCCcccccccc
Confidence 456999999999999999887 88888999855
No 279
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.57 E-value=0.041 Score=40.91 Aligned_cols=104 Identities=16% Similarity=0.173 Sum_probs=71.2
Q ss_pred CCCccccCCCcEEEeCCCccHHHHHHHH-hCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCC
Q 030565 1 MHHREWIERRRCIELGSGTGALAIFLRK-AMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPD 78 (175)
Q Consensus 1 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~-~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 78 (175)
|..++.+.|+.|+=+| -.-..++.++- ....+|..+|+++..+ .-..+-.+..+. .++..+.+++.+.+| .....
T Consensus 145 m~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli-~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~~~k 221 (354)
T COG1568 145 MYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLI-KFIEKVAEELGY-NNIEAFVFDLRNPLPEDLKRK 221 (354)
T ss_pred eccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHH-HHHHHHHHHhCc-cchhheeehhcccChHHHHhh
Confidence 3456778899999999 44455555443 3367899999999887 666766666666 346677777776666 34568
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCC
Q 030565 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPK 111 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pg 111 (175)
||+++.-.. +..+.+..++..=...||.-
T Consensus 222 FDvfiTDPp----eTi~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 222 FDVFITDPP----ETIKALKLFLGRGIATLKGE 250 (354)
T ss_pred CCeeecCch----hhHHHHHHHHhccHHHhcCC
Confidence 999876433 33445666777666777755
No 280
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.56 E-value=0.011 Score=42.97 Aligned_cols=77 Identities=17% Similarity=0.305 Sum_probs=41.3
Q ss_pred cEEEeCCCccHHHHHHHHhCCCcEEEEeCChHH---HHHHHHHHHhhCCC-CCCcceeeccCCCCC---CCCCCCccEEE
Q 030565 11 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQE---IEDNIAYNSTTNGI-TPALPHIKHSWGDAF---PIPNPDWDLIL 83 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~---l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~fD~i~ 83 (175)
+|||.=+|-|..++.++.. |++|++++-||-+ +...+++....... ......+++..++.. +.++++||+|.
T Consensus 78 ~VLDaTaGLG~Da~vlA~~-G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY 156 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASL-GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY 156 (234)
T ss_dssp -EEETT-TTSHHHHHHHHH-T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred EEEECCCcchHHHHHHHcc-CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence 8999999999999999875 8899999999954 22333333222121 112234445555443 34467999999
Q ss_pred eCCcc
Q 030565 84 ASDIL 88 (175)
Q Consensus 84 ~~~~l 88 (175)
.-.++
T Consensus 157 ~DPMF 161 (234)
T PF04445_consen 157 FDPMF 161 (234)
T ss_dssp E--S-
T ss_pred ECCCC
Confidence 96665
No 281
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.55 E-value=0.014 Score=41.47 Aligned_cols=104 Identities=14% Similarity=0.155 Sum_probs=49.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-----CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-----C-C-
Q 030565 7 IERRRCIELGSGTGALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-----P-I- 74 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-----~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~- 74 (175)
.+++.|+|+|.-.|.-++.+|+.+ ..+|+++|++.... .+...+......++..+..+..+.. . .
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~---~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~ 107 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH---NRKAIESHPMSPRITFIQGDSIDPEIVDQVRELA 107 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT-----S-GGGG----TTEEEEES-SSSTHHHHTSGSS-
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh---chHHHhhccccCceEEEECCCCCHHHHHHHHHhh
Confidence 367899999999988887766533 46799999965332 1122222222334455554443211 1 1
Q ss_pred CCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 75 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 75 ~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
......+|+. ++= ...+...+.|+.....+++|+.+++.
T Consensus 108 ~~~~~vlVil-Ds~---H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 108 SPPHPVLVIL-DSS---HTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp ---SSEEEEE-SS-------SSHHHHHHHHHHT--TT-EEEET
T ss_pred ccCCceEEEE-CCC---ccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 1123334443 222 11234558888899999999987775
No 282
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.54 E-value=0.018 Score=44.57 Aligned_cols=97 Identities=15% Similarity=0.208 Sum_probs=61.4
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeec-cCC-CCCCCCC-CCccE
Q 030565 7 IERRRCIELGSGT-GALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH-SWG-DAFPIPN-PDWDL 81 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~-~~fD~ 81 (175)
.++.+|+=+|||+ |.++..+++..+ ..|+++|.++.-+ +.+++....... ..... +.. ....... ..+|+
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl-~~A~~~~g~~~~----~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERL-ELAKEAGGADVV----VNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH-HHHHHhCCCeEe----ecCccccHHHHHHHHhCCCCCCE
Confidence 4455899999997 999988888765 5699999999887 444431111100 00000 000 0001112 36899
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++-..- .+ .++....+.++|+|++.+.
T Consensus 242 vie~~G------~~---~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 242 VIEAVG------SP---PALDQALEALRPGGTVVVV 268 (350)
T ss_pred EEECCC------CH---HHHHHHHHHhcCCCEEEEE
Confidence 886533 12 5888999999999999888
No 283
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.52 E-value=0.037 Score=44.84 Aligned_cols=106 Identities=18% Similarity=0.181 Sum_probs=68.8
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCC-----CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-------CCC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMN-----LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-------PIP 75 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~-----~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 75 (175)
+..+|+|-.||+|.+-...++..+ ..++|.|+++... ..++-|.-.++... ......++.+ ...
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~-~l~~mN~~lhgi~~---~~~i~~~dtl~~~~~~~~~~ 261 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTY-RLAKMNLILHGIEG---DANIRHGDTLSNPKHDDKDD 261 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHH-HHHHHHHHHhCCCc---cccccccccccCCcccccCC
Confidence 456899999999998876666542 4589999999886 66677777766622 1222222211 123
Q ss_pred CCCccEEEeCCccc--Cccc--------------------chHHHHHHHHHHhhcCCCCceeec
Q 030565 76 NPDWDLILASDILL--YVKQ--------------------YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~--~~~~--------------------~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+.||+|+++..+. .|.. ...-...++++...++|+|+..++
T Consensus 262 ~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 262 KGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred ccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 45799999976652 0000 011267889999999998866655
No 284
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.51 E-value=0.059 Score=38.02 Aligned_cols=143 Identities=13% Similarity=0.064 Sum_probs=72.2
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCc--EEEEeCChHH---------HHHHHHHHHhhCCCCCCcceeeccCCCCCC
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMNLD--ITTSDYNDQE---------IEDNIAYNSTTNGITPALPHIKHSWGDAFP 73 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~--v~~~D~s~~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (175)
+..+|.+|+|+=-|.|.++..++...+.+ |+++=..+.. +....++....|.. .+...... +.
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e--~~~~~~~A----~~ 118 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVE--VIGKPLVA----LG 118 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhh--hhCCcccc----cC
Confidence 45689999999999999999998876544 6666544321 10111111111100 00011000 11
Q ss_pred CCCCCccEEEeCCcccCcc-----cchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcch
Q 030565 74 IPNPDWDLILASDILLYVK-----QYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDE 148 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l~~~~-----~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (175)
.....|+++.+... |.. +.....++..++++.|||||.+.+..-.... ..+.-......+. +.
T Consensus 119 -~pq~~d~~~~~~~y-hdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~p-------G~~~~dt~~~~ri---~~ 186 (238)
T COG4798 119 -APQKLDLVPTAQNY-HDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADP-------GSGLSDTITLHRI---DP 186 (238)
T ss_pred -CCCcccccccchhh-hhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccC-------CCChhhhhhhccc---Ch
Confidence 22233444432221 111 1334458899999999999987775111100 0000000011122 34
Q ss_pred hHHHHHHHHcCCeeEEe
Q 030565 149 TIFFTSCENAGLEVKHL 165 (175)
Q Consensus 149 ~~~~~~~~~~g~~~~~~ 165 (175)
...+...+.+||..+--
T Consensus 187 a~V~a~veaaGFkl~ae 203 (238)
T COG4798 187 AVVIAEVEAAGFKLEAE 203 (238)
T ss_pred HHHHHHHHhhcceeeee
Confidence 77888899999976543
No 285
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.45 E-value=0.0075 Score=44.07 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=46.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEeC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILAS 85 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~ 85 (175)
...+|+|||||-=-+++...... +..|+|.|++..++ +.+.......+. .....+.|... ......|+.+..
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~v-e~l~~~l~~l~~-----~~~~~v~Dl~~~~~~~~~DlaLll 178 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLV-EFLNAFLAVLGV-----PHDARVRDLLSDPPKEPADLALLL 178 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHH-HHHHHHHHHTT------CEEEEEE-TTTSHTTSEESEEEEE
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHH-HHHHHHHHhhCC-----CcceeEeeeeccCCCCCcchhhHH
Confidence 36899999999988887654432 56899999999987 677666655444 12222223332 234578999997
Q ss_pred Ccc
Q 030565 86 DIL 88 (175)
Q Consensus 86 ~~l 88 (175)
-++
T Consensus 179 K~l 181 (251)
T PF07091_consen 179 KTL 181 (251)
T ss_dssp T-H
T ss_pred HHH
Confidence 776
No 286
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.35 E-value=0.0065 Score=43.83 Aligned_cols=80 Identities=16% Similarity=0.266 Sum_probs=50.1
Q ss_pred CCCcEEEeCCCccHH-HHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhC-CCCCCcceeeccCCC-CCC---CCCCCccE
Q 030565 8 ERRRCIELGSGTGAL-AIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN-GITPALPHIKHSWGD-AFP---IPNPDWDL 81 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~-~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~---~~~~~fD~ 81 (175)
++.++||||.|.--. -+.=..+.+...+|+|+++..+ +.++.++..| ++...+........+ .++ ...+.||.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl-~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSL-SSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHH-HHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 567789998765321 1111223378899999999988 7777777777 554333333222211 112 23568999
Q ss_pred EEeCCcc
Q 030565 82 ILASDIL 88 (175)
Q Consensus 82 i~~~~~l 88 (175)
++|+..+
T Consensus 157 tlCNPPF 163 (292)
T COG3129 157 TLCNPPF 163 (292)
T ss_pred EecCCCc
Confidence 9999987
No 287
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.34 E-value=0.043 Score=42.29 Aligned_cols=119 Identities=11% Similarity=0.013 Sum_probs=66.8
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCC-C----cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC------C
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMN-L----DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------P 73 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~-~----~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 73 (175)
+..++.+|||+.+-+|.=+..+.+... . .|++-|.++.-+..........+.....+........... +
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 456899999999999999987766542 1 6999999986431111111111111111111111111111 1
Q ss_pred CCCCCccEEEe-----CCccc-------Cc--------ccchHHHHHHHHHHhhcCCCCceeeccccCCC
Q 030565 74 IPNPDWDLILA-----SDILL-------YV--------KQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQ 123 (175)
Q Consensus 74 ~~~~~fD~i~~-----~~~l~-------~~--------~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~ 123 (175)
..-..||-|++ .+... .. .-..-+..++..-++.||+||+++.++-....
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 12236888876 22211 00 00123467888999999999999999655543
No 288
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.32 E-value=0.0071 Score=42.25 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=30.7
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCCh
Q 030565 4 REWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYND 41 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~ 41 (175)
.-+.++.+|||+||.+|+++..+.++.+ ..|.|+|+-.
T Consensus 65 ~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh 104 (232)
T KOG4589|consen 65 RFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH 104 (232)
T ss_pred cccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee
Confidence 3456789999999999999998877763 3499999844
No 289
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=96.28 E-value=0.018 Score=43.73 Aligned_cols=94 Identities=18% Similarity=0.165 Sum_probs=60.6
Q ss_pred ccCCCcEEEeCCC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-----CCCCCCc
Q 030565 6 WIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-----PIPNPDW 79 (175)
Q Consensus 6 ~~~~~~vLDlGcG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~f 79 (175)
..++.+||-.|+| .|..+..+++..+.+|++++.++... +.++. .+. ..+........ ....+.+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~-~~~~~----~g~----~~~~~~~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKL-ELAKE----LGA----DEVLNSLDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHH-HHHHH----hCC----CEEEcCCCcCHHHHHHHhcCCCc
Confidence 4467889999887 48888889998899999999998775 44432 112 11110010000 1233468
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+++.... .. ..+++..++|+++|+++..
T Consensus 234 D~vid~~g------~~---~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 234 DVIFDFVG------TQ---PTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred eEEEECCC------CH---HHHHHHHHHhhcCCEEEEE
Confidence 98876421 11 5778889999999988875
No 290
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.27 E-value=0.0026 Score=50.50 Aligned_cols=104 Identities=16% Similarity=0.141 Sum_probs=72.4
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CCCCCCCCccE
Q 030565 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AFPIPNPDWDL 81 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~fD~ 81 (175)
.++-+|||.=|++|.-++..|++. ..+|++-|.+++.+ +.+++|.+.|+....+.....+... ..+-....||+
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV-~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAV-TSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHH-HHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 456789999999999999999976 34699999999998 8888898888553222221111110 11222468998
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030565 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
|-.- .+ .... .+|..+.+.++.||.++++.
T Consensus 187 IDLD-Py---Gs~s---~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 187 IDLD-PY---GSPS---PFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred EecC-CC---CCcc---HHHHHHHHHhhcCCEEEEEe
Confidence 8762 22 2222 78888899999999999983
No 291
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.21 E-value=0.0092 Score=44.01 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=29.7
Q ss_pred CcEEEeCCCccHHHHHHHHhCC---------CcEEEEeCChHHHHHHHHHH
Q 030565 10 RRCIELGSGTGALAIFLRKAMN---------LDITTSDYNDQEIEDNIAYN 51 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~---------~~v~~~D~s~~~l~~~~~~~ 51 (175)
-+|+|+|+|+|.++..+.+... .+++.+|+|+.+- +..++.
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~-~~Q~~~ 69 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLR-ERQKER 69 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCH-HHHHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHH-HHHHHH
Confidence 6899999999999988776542 3699999999874 444433
No 292
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=96.17 E-value=0.0091 Score=47.21 Aligned_cols=107 Identities=14% Similarity=0.112 Sum_probs=64.8
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHHhh---CCCCCCcceeeccCCCCCCC-CCCCcc
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTT---NGITPALPHIKHSWGDAFPI-PNPDWD 80 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~fD 80 (175)
....+.|+|+|.|.-.-.+.... ...++.+|.+..|. +....+... ++. ..+..+.+.- ..++. ..+.||
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~-~~~e~~lr~~~~~g~-~~v~~~~~~r-~~~pi~~~~~yD 276 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAML-KQSEKNLRDGSHIGE-PIVRKLVFHR-QRLPIDIKNGYD 276 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHH-HHHHHhhcChhhcCc-hhccccchhc-ccCCCCccccee
Confidence 44668889888765443332221 34699999999997 444433332 111 1122211111 12333 344699
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHh-hcCCCCceeec
Q 030565 81 LILASDILLYVKQYSNLIKSLSVLLK-SYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~-~l~pgG~~~~~ 117 (175)
+|++++.+++.........+.+.+++ ...+|+.+++.
T Consensus 277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViI 314 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVII 314 (491)
T ss_pred eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEE
Confidence 99999999888877777777777776 44566666666
No 293
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.01 E-value=0.18 Score=38.50 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=31.3
Q ss_pred EEEeCCCccHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHH
Q 030565 12 CIELGSGTGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNS 52 (175)
Q Consensus 12 vLDlGcG~G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~ 52 (175)
|+|+-||.|.++.-+.+. |.+ +.++|+++..+ +..+.|.
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~-~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQ-KTYEANF 40 (315)
T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHH-HHHHHhC
Confidence 689999999999999766 566 67899999886 5656554
No 294
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.91 E-value=0.077 Score=41.54 Aligned_cols=107 Identities=10% Similarity=0.040 Sum_probs=63.3
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeec-cCCCCC-CC-CCCCcc
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH-SWGDAF-PI-PNPDWD 80 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~-~~~~fD 80 (175)
..++.+||.+|||. |..+..+++..+. +|+++|.++... +.++... +. ..+..... ++.+.. .. ....+|
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~-~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~~~D 256 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERL-EMARSHL---GA-ETINFEEVDDVVEALRELTGGRGPD 256 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCCCCC
Confidence 34678999999987 9899999998886 499999999876 4444321 11 00010000 010101 11 123689
Q ss_pred EEEeCCcc-------cCc-----ccchHHHHHHHHHHhhcCCCCceeec
Q 030565 81 LILASDIL-------LYV-----KQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l-------~~~-----~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+-.-.- +.. ....+....++++.++++|+|+++..
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred EEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 88874210 000 00011136789999999999988876
No 295
>PRK11524 putative methyltransferase; Provisional
Probab=95.88 E-value=0.028 Score=42.23 Aligned_cols=45 Identities=7% Similarity=-0.084 Sum_probs=36.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHh
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST 53 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~ 53 (175)
.+|+.|||-=||+|..+..+.+ .+.+.+|+|++++.+ +.+.+.+.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~-lgR~~IG~Ei~~~Y~-~~a~~Rl~ 251 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKA-SGRKFIGIEINSEYI-KMGLRRLD 251 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHH-cCCCEEEEeCCHHHH-HHHHHHHH
Confidence 4689999999999998877755 499999999999887 55554443
No 296
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.76 E-value=0.033 Score=41.69 Aligned_cols=111 Identities=16% Similarity=0.150 Sum_probs=68.2
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---C-CCCCCc
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---P-IPNPDW 79 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~f 79 (175)
.+...+++|=||.|.|......+++. -.++..+|++...++ .-+.-...-...-.-+.+.+..+|.. . ...++|
T Consensus 118 s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie-~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIE-SSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHH-HHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCc
Confidence 34567899999999999887776653 235899999997764 32222222111112234444444432 2 236799
Q ss_pred cEEEe--CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 80 DLILA--SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~--~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|+. ++.. .....--+...++-+.+.||++|.++..
T Consensus 197 dVii~dssdpv-gpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 197 DVIITDSSDPV-GPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred eEEEEecCCcc-chHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 99996 3333 1111113457778888999999987776
No 297
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.70 E-value=0.074 Score=40.91 Aligned_cols=91 Identities=12% Similarity=0.163 Sum_probs=55.9
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHh-C-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030565 7 IERRRCIELGSGT-GALAIFLRKA-M-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~-~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
.+|.+||=+|||. |..+..+++. . +.+|+++|.+++.+ +.++. .+. ... . +... ....+|+|+
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~-~~a~~----~~~----~~~-~---~~~~-~~~g~d~vi 227 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKL-DLFSF----ADE----TYL-I---DDIP-EDLAVDHAF 227 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHH-HHHhh----cCc----eee-h---hhhh-hccCCcEEE
Confidence 4688999999975 7777776664 3 56899999988665 44332 111 000 0 0111 111488887
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-.--- ...+ ..++...+.++++|++++.
T Consensus 228 D~~G~---~~~~---~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 228 ECVGG---RGSQ---SAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred ECCCC---CccH---HHHHHHHHhCcCCcEEEEE
Confidence 53210 0012 6788899999999998875
No 298
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.64 E-value=0.036 Score=44.97 Aligned_cols=99 Identities=13% Similarity=0.212 Sum_probs=64.2
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC--------------C
Q 030565 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--------------A 71 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~ 71 (175)
.++.+++=+|+|. |..+..+++..|..|+++|.++..+ +.++.. +. ..+..+..+ +
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rl-e~a~~l----Ga----~~v~v~~~e~g~~~~gYa~~~s~~ 232 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVK-EQVQSM----GA----EFLELDFKEEGGSGDGYAKVMSEE 232 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHc----CC----eEEeccccccccccccceeecCHH
Confidence 4578999999996 8888888888899999999999765 443321 11 111111100 0
Q ss_pred --------CCCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 72 --------FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 72 --------~~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++..-..+|+|+..-.+ +..+.+.-+.+++.+.+|||+.++-.
T Consensus 233 ~~~~~~~~~~e~~~~~DIVI~Tali---pG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 233 FIAAEMELFAAQAKEVDIIITTALI---PGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHHHHHHHhCCCCEEEECccc---CCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 11112469999887665 33333235778889999999876644
No 299
>PRK13699 putative methylase; Provisional
Probab=95.60 E-value=0.047 Score=39.68 Aligned_cols=44 Identities=7% Similarity=-0.063 Sum_probs=35.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHH
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNS 52 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~ 52 (175)
.+|..|||-=||+|..+....+ .+.+++|+|+++... +.+.+.+
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~-~~r~~~g~e~~~~y~-~~~~~r~ 205 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQ-SGRRYIGIELLEQYH-RAGQQRL 205 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHH-cCCCEEEEecCHHHH-HHHHHHH
Confidence 3688999999999998877755 499999999999886 4444333
No 300
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.60 E-value=0.0059 Score=39.91 Aligned_cols=83 Identities=20% Similarity=0.218 Sum_probs=54.7
Q ss_pred CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CC-C-CCCCCccEEEeCCcccCcc
Q 030565 18 GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF-P-IPNPDWDLILASDILLYVK 92 (175)
Q Consensus 18 G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-~~~~~fD~i~~~~~l~~~~ 92 (175)
|.|..+..+++..|.+|+++|.++.-+ +.+++.... ..+.....+ .+ + .....+|+|+-.-.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~-~~~~~~Ga~-------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g----- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKL-ELAKELGAD-------HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG----- 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHH-HHHHHTTES-------EEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHH-HHHHhhccc-------ccccccccccccccccccccccceEEEEecC-----
Confidence 568899999998899999999999775 555432211 111111111 01 1 12247999987533
Q ss_pred cchHHHHHHHHHHhhcCCCCceeec
Q 030565 93 QYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 93 ~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+ ..++....+++|+|++++.
T Consensus 68 -~~---~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 68 -SG---DTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp -SH---HHHHHHHHHEEEEEEEEEE
T ss_pred -cH---HHHHHHHHHhccCCEEEEE
Confidence 12 7888999999999999887
No 301
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.14 Score=37.52 Aligned_cols=108 Identities=15% Similarity=0.085 Sum_probs=65.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCC-----CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCC-Ccc
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMN-----LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNP-DWD 80 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~-----~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~fD 80 (175)
.+++.+|+|+|+..=+..+..... ..++.+|+|...++..++...+. .....+..+..+....+. .+.. .-=
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~-y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE-YPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh-CCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 468899999999988877656442 46999999999885555433333 332222222222211111 1111 222
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.++...++-+ ..+.+-..++.++...++||-.+.+-
T Consensus 157 ~~flGStlGN-~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 157 FVFLGSTLGN-LTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEecccccC-CChHHHHHHHHHHHhcCCCcceEEEe
Confidence 3444445522 33556678899999999999877776
No 302
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.54 E-value=0.09 Score=38.36 Aligned_cols=97 Identities=18% Similarity=0.195 Sum_probs=58.3
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEEEe
Q 030565 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILA 84 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i~~ 84 (175)
.++.+||-.|+|+ |.....+++..+.+|++++.++... +.++.. +....+........... ....+.+|+++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~-~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 207 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKL-ELAKEL----GADHVIDYKEEDLEEELRLTGGGGADVVID 207 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHH-HHHHHh----CCceeccCCcCCHHHHHHHhcCCCCCEEEE
Confidence 4678999999985 7777888888789999999988664 443321 11000000000000000 112347999986
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...- . ..++.+.+.++++|+++..
T Consensus 208 ~~~~------~---~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 208 AVGG------P---ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred CCCC------H---HHHHHHHHhcccCCEEEEE
Confidence 4221 1 4566678888999988876
No 303
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=95.53 E-value=0.2 Score=38.28 Aligned_cols=95 Identities=16% Similarity=0.185 Sum_probs=57.3
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC--C-CCC-CCCCc
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--A-FPI-PNPDW 79 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~-~~~~f 79 (175)
..+|.+||=+|+|. |..+..+++..+.+ |+++|.+++.. +.++.. +.. ..+.....+ . ... ....+
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~-~~~~~~----ga~---~~i~~~~~~~~~~~~~~~~~~~ 232 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERL-ELAKAL----GAD---FVINSGQDDVQEIRELTSGAGA 232 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHh----CCC---EEEcCCcchHHHHHHHhCCCCC
Confidence 34578888888874 77778888888888 99999988765 333321 110 011000000 0 011 12368
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|+-... .+ ..+....+.++++|++++.
T Consensus 233 d~vid~~g------~~---~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 233 DVAIECSG------NT---AARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CEEEECCC------CH---HHHHHHHHHhhcCCEEEEE
Confidence 98885422 11 4556778889999988865
No 304
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.37 E-value=0.15 Score=38.09 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=57.4
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CC-CCCCccEE
Q 030565 7 IERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PI-PNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~fD~i 82 (175)
.++++||=.|+|. |..+..+++..+.+ |+++|.++..+ +.++.. +....+... ...+.. .. ....+|++
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~-~~a~~~----Ga~~~i~~~--~~~~~~~~~~~~~g~d~v 191 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRR-ELALSF----GATALAEPE--VLAERQGGLQNGRGVDVA 191 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHc----CCcEecCch--hhHHHHHHHhCCCCCCEE
Confidence 3678899899875 88888888887876 99999888665 333321 110000000 000000 01 12358888
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-.-. .+ ..++...+.++|+|+++..
T Consensus 192 id~~G------~~---~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 192 LEFSG------AT---AAVRACLESLDVGGTAVLA 217 (280)
T ss_pred EECCC------Ch---HHHHHHHHHhcCCCEEEEe
Confidence 76321 12 5677888999999988876
No 305
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.26 E-value=0.0073 Score=38.38 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=29.7
Q ss_pred CccEEEeCCcccCccc----chHHHHHHHHHHhhcCCCCceeec
Q 030565 78 DWDLILASDILLYVKQ----YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~----~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.||+|+|-.+. .|-+ .+.+..+++.+++.|+|||.+++-
T Consensus 1 ~yDvilclSVt-kWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVT-KWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-H-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEee-EEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999997775 4433 346788999999999999988885
No 306
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.23 E-value=0.15 Score=39.39 Aligned_cols=93 Identities=19% Similarity=0.212 Sum_probs=57.0
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeC---ChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccE
Q 030565 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDY---NDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDL 81 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~---s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~ 81 (175)
.++.+||=+|+|. |.++..+++..+.+|++++. ++... +.+++ .+. ..+.....+.. ....+.+|+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~-~~~~~----~Ga----~~v~~~~~~~~~~~~~~~~d~ 241 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKA-DIVEE----LGA----TYVNSSKTPVAEVKLVGEFDL 241 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHH-HHHHH----cCC----EEecCCccchhhhhhcCCCCE
Confidence 4688999999985 88888888888889999987 44443 32221 122 11110000000 011246888
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+-.-- .+ ..+.+..+.++++|++++.
T Consensus 242 vid~~g------~~---~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 242 IIEATG------VP---PLAFEALPALAPNGVVILF 268 (355)
T ss_pred EEECcC------CH---HHHHHHHHHccCCcEEEEE
Confidence 887522 11 4678888999999988765
No 307
>PRK10458 DNA cytosine methylase; Provisional
Probab=95.13 E-value=0.56 Score=37.89 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=33.3
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHH
Q 030565 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYN 51 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~ 51 (175)
.-+++|+=||.|.+++-+-..+...|.++|+++.+. +..+.|
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~-~TY~~N 129 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAV-RTYKAN 129 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHH-HHHHHH
Confidence 458999999999999999666444589999999886 555555
No 308
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.06 E-value=0.077 Score=42.01 Aligned_cols=88 Identities=10% Similarity=0.081 Sum_probs=56.8
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...|++|+=+|+|. |......++..|.+|+.+|.++..+ +.+.. .+. ... ...+. -...|+|+.
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~-~~A~~----~G~----~~~--~~~e~----v~~aDVVI~ 263 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICA-LQAAM----EGY----EVM--TMEEA----VKEGDIFVT 263 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhH-HHHHh----cCC----EEc--cHHHH----HcCCCEEEE
Confidence 35799999999997 8888888887788999999998654 22221 122 011 01011 124698886
Q ss_pred CCcccCcccchHHHHHHHH-HHhhcCCCCceeec
Q 030565 85 SDILLYVKQYSNLIKSLSV-LLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~-l~~~l~pgG~~~~~ 117 (175)
... .. .++.. ..+.+++||.++.+
T Consensus 264 atG------~~---~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 264 TTG------NK---DIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred CCC------CH---HHHHHHHHhcCCCCcEEEEe
Confidence 422 22 44554 58899999977665
No 309
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.96 E-value=0.038 Score=41.80 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=66.3
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 8 ERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
++.+|.=||.|. |..+..+|.-.+.+|+..|.|..-+ .++...... ++... .+-...+...-...|++|..-
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl-~~ldd~f~~-----rv~~~-~st~~~iee~v~~aDlvIgaV 239 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRL-RQLDDLFGG-----RVHTL-YSTPSNIEEAVKKADLVIGAV 239 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHH-hhhhHhhCc-----eeEEE-EcCHHHHHHHhhhccEEEEEE
Confidence 446788899996 9999999888899999999998776 444322211 11111 111111222234789999876
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+ +.-..+.-+.+++...+|||+.++=+
T Consensus 240 LI---pgakaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 240 LI---PGAKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred Ee---cCCCCceehhHHHHHhcCCCcEEEEE
Confidence 66 44445668889999999999865544
No 310
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.93 E-value=0.094 Score=40.56 Aligned_cols=98 Identities=13% Similarity=0.057 Sum_probs=58.2
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CC-CCCCccE
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PI-PNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~fD~ 81 (175)
..++.+||=.|||. |..+..+++..+.+ |+++|.++... +.+++. +....+.....++.+.. .. ....+|+
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~-~~~~~~----Ga~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKL-EWAREF----GATHTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHHc----CCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 34688999899875 88888888888875 99999988765 443321 11000000000110000 11 1235898
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+-.-. .+ ..++...+.++++|++++.
T Consensus 249 vid~~g------~~---~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 249 VIDAVG------RP---ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEECCC------CH---HHHHHHHHHhccCCEEEEE
Confidence 875321 12 4667788899999988876
No 311
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=94.89 E-value=0.056 Score=41.93 Aligned_cols=35 Identities=20% Similarity=0.475 Sum_probs=30.8
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHH
Q 030565 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
+.++|+|+|.|.++..++-..+..|.++|-|....
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~ 189 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLV 189 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCceEEEeccchHHH
Confidence 57999999999999999877788999999997553
No 312
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=94.76 E-value=0.014 Score=39.76 Aligned_cols=105 Identities=10% Similarity=0.100 Sum_probs=57.2
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030565 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
+++.+=+|+..=-.=....+.++.+|..++.++--+++..+..... +.. .+.........++||++.+..++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ss------i~p--~df~~~~~~y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSS------ILP--VDFAKNWQKYAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccccc------ccH--HHHHHHHHHhhccchhhheechh
Confidence 5667777776433323333555677999998763332221111100 000 01011111224579998887776
Q ss_pred cCcc--------cchHHHHHHHHHHhhcCCCCceeeccccC
Q 030565 89 LYVK--------QYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 89 ~~~~--------~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
.|.. +..--.+.+.++.++|||||.+++..+--
T Consensus 74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 3221 11123577888999999999999985543
No 313
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.65 E-value=0.82 Score=31.94 Aligned_cols=149 Identities=13% Similarity=0.101 Sum_probs=69.5
Q ss_pred EEEeCCCc-cH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHh--------hCCCCCC---cceeeccCCCCCCCCCCC
Q 030565 12 CIELGSGT-GA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNST--------TNGITPA---LPHIKHSWGDAFPIPNPD 78 (175)
Q Consensus 12 vLDlGcG~-G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~ 78 (175)
|.=+|+|+ |. ++..++.. |.+|+.+|.+++.++ ...+.+. ....... .....+....++.... .
T Consensus 2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~~l~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~ 78 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSPEALE-RARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D 78 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSHHHHH-HHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred EEEEcCCHHHHHHHHHHHhC-CCcEEEEECChHHHH-hhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence 44578876 43 33344444 999999999998864 2222211 1111100 0000111222333222 5
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC--CC-----------CCCCC---CceEeeeecc
Q 030565 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GT-----------EGLPW---PAFLMSWRRR 142 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~--~~-----------~~~~~---~~~~~~~~~~ 142 (175)
.|+|+=+-. ++.+--+.+++++-+.+.|+..+...+....-.. .. ++.+. +..-......
T Consensus 79 adlViEai~----E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~ 154 (180)
T PF02737_consen 79 ADLVIEAIP----EDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPK 154 (180)
T ss_dssp ESEEEE-S-----SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TT
T ss_pred hheehhhcc----ccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCC
Confidence 688886532 5556667999999999999875555533322111 11 11111 1111112222
Q ss_pred CCCcchhHHHHHHHHcCCeeEEecc
Q 030565 143 IGKEDETIFFTSCENAGLEVKHLGS 167 (175)
Q Consensus 143 ~~~~~~~~~~~~~~~~g~~~~~~~~ 167 (175)
..........+++++.|.....+.+
T Consensus 155 T~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 155 TSPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCEEEEecC
Confidence 3333346777778888887766643
No 314
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=94.62 E-value=0.022 Score=43.52 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=70.0
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHH------HHHHHHHhhCCCCCCc-ceeeccCCCCCCC-CCC
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIE------DNIAYNSTTNGITPAL-PHIKHSWGDAFPI-PNP 77 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~ 77 (175)
..+|+-|+|==-|||++....|.. |..|+|+||+-.++. ++++.|....+...+. ..+..+.. ..+. ...
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~F-Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~s-n~~~rsn~ 283 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHF-GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFS-NPPLRSNL 283 (421)
T ss_pred cCCCCEEecCccccCceeeehhhh-cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeeccc-Ccchhhcc
Confidence 456888999999999998888664 999999999998764 2345555555542211 11112211 1122 233
Q ss_pred CccEEEeCCccc------------------------Ccccch------HHHHHHHHHHhhcCCCCceeeccc
Q 030565 78 DWDLILASDILL------------------------YVKQYS------NLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 78 ~fD~i~~~~~l~------------------------~~~~~~------~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
.||.|++-...- |.+... -...+++-..+.|..||++++-.+
T Consensus 284 ~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 284 KFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred eeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 799998842210 111111 134667777889999999998855
No 315
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.61 E-value=0.02 Score=44.89 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=44.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC
Q 030565 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT 58 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~ 58 (175)
.+|..|.|+-||.|-+++.+++. ++.|++-|.+++++ ++++.++..|...
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesi-k~Lk~ni~lNkv~ 297 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESI-KWLKANIKLNKVD 297 (495)
T ss_pred CCcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHH-HHHHHhccccccc
Confidence 35788999999999999999887 79999999999998 9999888887663
No 316
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.53 E-value=0.17 Score=39.34 Aligned_cols=98 Identities=12% Similarity=0.067 Sum_probs=57.9
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEE
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i 82 (175)
..++.+||=.|+|. |..+..+++..+. +|+++|.++..+ +.++.. +....+.....++.+.. ....+.+|+|
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~-~~a~~~----Ga~~~i~~~~~~~~~~i~~~~~~g~d~v 263 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKL-ALAREL----GATATVNAGDPNAVEQVRELTGGGVDYA 263 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHH-HHHHHc----CCceEeCCCchhHHHHHHHHhCCCCCEE
Confidence 44678888899875 8888888888787 699999988765 443321 11000010000010000 1112258888
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-.-. .+ ..++...+.++++|+++..
T Consensus 264 id~~G------~~---~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 264 FEMAG------SV---PALETAYEITRRGGTTVTA 289 (371)
T ss_pred EECCC------Ch---HHHHHHHHHHhcCCEEEEE
Confidence 86321 11 5667788899999988765
No 317
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.53 E-value=0.39 Score=36.92 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=33.7
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHh
Q 030565 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST 53 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~ 53 (175)
.-+++||=||.|.+++-+...+..-+.++|+++..+ +..+.|..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~-~ty~~n~~ 46 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAV-ATYKANFP 46 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHH-HHHHHhCC
Confidence 457999999999999999776333489999999887 55554443
No 318
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=94.51 E-value=0.14 Score=39.62 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=30.0
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC---------CCcEEEEeCChHHH
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM---------NLDITTSDYNDQEI 44 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~---------~~~v~~~D~s~~~l 44 (175)
..-.++|+|.|+|.++..+.+.. ..++..+++|++..
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~ 122 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELR 122 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHH
Confidence 34579999999999997766644 56799999999774
No 319
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=94.42 E-value=0.26 Score=37.59 Aligned_cols=93 Identities=18% Similarity=0.327 Sum_probs=57.4
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCC--CCCCCCCCCccEEE
Q 030565 8 ERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG--DAFPIPNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~fD~i~ 83 (175)
++.+||-.|||. |..+..+++..+. .+++++.++... +.++.. +.. ..+..... .......+.+|+++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~-~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~vd~vl 236 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPL-AVARAM----GAD---ETVNLARDPLAAYAADKGDFDVVF 236 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHHc----CCC---EEEcCCchhhhhhhccCCCccEEE
Confidence 688899999875 7788888888787 799999988775 433321 110 01100000 01111123589988
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..... . ..++++.+.|+++|+++..
T Consensus 237 d~~g~------~---~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 237 EASGA------P---AALASALRVVRPGGTVVQV 261 (339)
T ss_pred ECCCC------H---HHHHHHHHHHhcCCEEEEE
Confidence 74221 1 4567888999999988764
No 320
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=94.38 E-value=0.28 Score=41.43 Aligned_cols=126 Identities=14% Similarity=0.154 Sum_probs=68.1
Q ss_pred CcEEEeCCCccHHHHHHHHhC-------------CCcEEEEeCCh---HHHHHHHH----------HHHhhCCC-CCCcc
Q 030565 10 RRCIELGSGTGALAIFLRKAM-------------NLDITTSDYND---QEIEDNIA----------YNSTTNGI-TPALP 62 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~-------------~~~v~~~D~s~---~~l~~~~~----------~~~~~~~~-~~~~~ 62 (175)
-+|+|+|=|+|...+...+.. ..++++++..| +.+.+..+ .-...... ...+.
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 579999999999887655322 23689999754 22212111 11111000 00011
Q ss_pred ---------eeeccCCCCC---CCCCCCccEEEeCCcccCcccchHH--HHHHHHHHhhcCCCCceeeccccCCCCCCCC
Q 030565 63 ---------HIKHSWGDAF---PIPNPDWDLILASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGHLTKNEQGEGTE 128 (175)
Q Consensus 63 ---------~~~~~~~~~~---~~~~~~fD~i~~~~~l~~~~~~~~~--~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~ 128 (175)
.+.+.++|.. +.....||+++.-.. .....+++ ..+++++.++++|||++.-. .
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~F--sP~~np~~W~~~~~~~l~~~~~~~~~~~t~--t-------- 206 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGF--APAKNPDMWSPNLFNALARLARPGATLATF--T-------- 206 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCC--CCccChhhccHHHHHHHHHHhCCCCEEEEe--e--------
Confidence 1222234322 212245888876311 11112222 48999999999999955531 1
Q ss_pred CCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030565 129 GLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
......+.+.++||++...
T Consensus 207 ------------------~a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 207 ------------------SAGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred ------------------hHHHHHHHHHHcCCeeeec
Confidence 1356677788888887765
No 321
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.37 E-value=0.6 Score=35.83 Aligned_cols=158 Identities=15% Similarity=0.095 Sum_probs=76.7
Q ss_pred CcEEEeCCCc-cH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHHH-------hhCCCCCCcceeeccCCCCCCCCCCCcc
Q 030565 10 RRCIELGSGT-GA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNS-------TTNGITPALPHIKHSWGDAFPIPNPDWD 80 (175)
Q Consensus 10 ~~vLDlGcG~-G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~fD 80 (175)
++|-=||+|+ |. ++..++.. |.+|+..|.+++.++ .+...+ ...+.......-.+.....+...-..-|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aD 85 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-GLDVVAWDPAPGAEA-ALRANVANAWPALERQGLAPGASPARLRFVATIEACVADAD 85 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCHHHHH-HHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCC
Confidence 5677888885 33 33445444 999999999997753 222111 1111110000000011111111123468
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-------------CCCCCCCCc---eEeeeeccCC
Q 030565 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-------------GTEGLPWPA---FLMSWRRRIG 144 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-------------~~~~~~~~~---~~~~~~~~~~ 144 (175)
+|+-+-. +..+--..+++++-+.++|+..+...+....... .+++.+... .-.....+..
T Consensus 86 lViEavp----E~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T~ 161 (321)
T PRK07066 86 FIQESAP----EREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTA 161 (321)
T ss_pred EEEECCc----CCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCC
Confidence 8887522 4444455888999999999874444433322111 111111111 1111112222
Q ss_pred CcchhHHHHHHHHcCCeeEEe-cceEEEEe
Q 030565 145 KEDETIFFTSCENAGLEVKHL-GSRVYCIK 173 (175)
Q Consensus 145 ~~~~~~~~~~~~~~g~~~~~~-~~~~~~i~ 173 (175)
.+..+...+++++.|.....+ .+..-+|.
T Consensus 162 ~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~ 191 (321)
T PRK07066 162 PEAVDAAMGIYRALGMRPLHVRKEVPGFIA 191 (321)
T ss_pred HHHHHHHHHHHHHcCCEeEecCCCCccHHH
Confidence 333456677788888776666 45444443
No 322
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=94.35 E-value=0.22 Score=38.70 Aligned_cols=95 Identities=17% Similarity=0.159 Sum_probs=55.7
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.+|++||=.|+|. |..+..+++..+.+|++++.++....+.+++ .+.. ..+.....+......+.+|+|+-.
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~----~Ga~---~vi~~~~~~~~~~~~~~~D~vid~ 254 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINR----LGAD---SFLVSTDPEKMKAAIGTMDYIIDT 254 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHh----CCCc---EEEcCCCHHHHHhhcCCCCEEEEC
Confidence 3578888899975 8888889898888999998877543122221 1110 000000000000001247888753
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.. .+ ..+++..++++++|+++..
T Consensus 255 ~g------~~---~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 255 VS------AV---HALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CC------CH---HHHHHHHHHhcCCcEEEEe
Confidence 21 11 4677788999999998865
No 323
>PLN02827 Alcohol dehydrogenase-like
Probab=94.11 E-value=0.76 Score=35.95 Aligned_cols=98 Identities=14% Similarity=0.047 Sum_probs=56.5
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeec--cCCCCC-CCCCCCcc
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH--SWGDAF-PIPNPDWD 80 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~fD 80 (175)
..+|.+||=.|+|. |..+..+++..|.. |+++|.++... +.++.. +....+..... ++.... ....+.+|
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~-~~a~~l----Ga~~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKA-EKAKTF----GVTDFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHH-HHHHHc----CCcEEEcccccchHHHHHHHHHhCCCCC
Confidence 45688999999875 88888888877874 89999888664 333221 22000000000 000000 01122588
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCC-Cceeec
Q 030565 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pg-G~~~~~ 117 (175)
+|+-.-. .+ ..+....+.+++| |++++.
T Consensus 266 ~vid~~G------~~---~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 266 YSFECVG------DT---GIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred EEEECCC------Ch---HHHHHHHHhhccCCCEEEEE
Confidence 8876422 11 4567788888998 988765
No 324
>PRK13699 putative methylase; Provisional
Probab=94.00 E-value=0.39 Score=34.90 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=27.6
Q ss_pred CCCCCccEEEeCCcccC------------cccchHHHHHHHHHHhhcCCCCceee
Q 030565 74 IPNPDWDLILASDILLY------------VKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l~~------------~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
++++++|+|+....... ....+-+..++.+++|+|||||.+++
T Consensus 16 lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 16 FPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 45667777777644310 00012245889999999999997765
No 325
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=93.90 E-value=0.18 Score=38.26 Aligned_cols=46 Identities=13% Similarity=0.011 Sum_probs=37.2
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHH
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNS 52 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~ 52 (175)
..+++.++|.=+|.|..+..+++.. ...|+|+|.++.++ +.++...
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al-~~ak~~L 64 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAI-AFAKERL 64 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHHH
Confidence 3467899999999999999998865 46799999999987 5554443
No 326
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.64 E-value=0.21 Score=36.29 Aligned_cols=96 Identities=16% Similarity=0.248 Sum_probs=54.7
Q ss_pred CcEEEeCCCccHHHHHHHHhCC-------C---cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC------CCC
Q 030565 10 RRCIELGSGTGALAIFLRKAMN-------L---DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD------AFP 73 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~-------~---~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 73 (175)
+|+.||.+-+|+++..+++... . .++++|+.+=...+ +. -.++.+... .+.
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~---------GV----~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIE---------GV----IQLQGDITSASTAEAIIE 109 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccC---------ce----EEeecccCCHhHHHHHHH
Confidence 6799999999999999988652 1 29999997722100 01 111111111 111
Q ss_pred -CCCCCccEEEeCCcc--cCcccc------hHHHHHHHHHHhhcCCCCceeecc
Q 030565 74 -IPNPDWDLILASDIL--LYVKQY------SNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 74 -~~~~~fD~i~~~~~l--~~~~~~------~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
|-...-|+|++-..- .-.++. +-+..+++-...+|+|||.|+.-+
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 223467888874321 011111 123455666678999999887663
No 327
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=93.63 E-value=0.7 Score=35.71 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=58.6
Q ss_pred ccCCCcEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeecc----CCCCC-CCCCCC
Q 030565 6 WIERRRCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS----WGDAF-PIPNPD 78 (175)
Q Consensus 6 ~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~ 78 (175)
..+|.+||=.|+ | .|..+..+|+..|.+|++++.+++.. +.++.. .+.. ..+... +.+.. ....+.
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~-~~~~~~---lGa~---~vi~~~~~~~~~~~i~~~~~~g 228 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKV-DLLKNK---LGFD---EAFNYKEEPDLDAALKRYFPEG 228 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHH-HHHHHh---cCCC---EEEECCCcccHHHHHHHHCCCC
Confidence 456888988887 4 69999999998899999999888664 333211 1110 111110 00000 111235
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+|+-. . . . ..+....++++++|++++.
T Consensus 229 vD~v~d~--v---G--~---~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 229 IDIYFDN--V---G--G---DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred cEEEEEC--C---C--H---HHHHHHHHHhccCCEEEEE
Confidence 8888753 2 1 1 4667888999999998865
No 328
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=93.58 E-value=0.83 Score=34.65 Aligned_cols=95 Identities=16% Similarity=0.088 Sum_probs=58.3
Q ss_pred ccCCCcEEEeCCC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 6 WIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+||-.|+| .|..+..+++..+.+|++++.+++.. +.+++. +... .+.....+......+.+|+++.
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~-~~~~~~----g~~~---~~~~~~~~~~~~~~~~~d~vi~ 231 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKR-ELARKL----GADE---VVDSGAELDEQAAAGGADVILV 231 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHh----CCcE---EeccCCcchHHhccCCCCEEEE
Confidence 3457789999997 58888888888888999999988775 444321 1100 0000000000001246898875
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
... .. ..+....+.++++|+++..
T Consensus 232 ~~~------~~---~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 232 TVV------SG---AAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred CCC------cH---HHHHHHHHhcccCCEEEEE
Confidence 321 11 4667788999999988776
No 329
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.50 E-value=1.7 Score=29.99 Aligned_cols=101 Identities=16% Similarity=0.189 Sum_probs=55.1
Q ss_pred eCCCccHHHHHHHHhC--CCcEEEEeCChH--HHHHH--HHHHHh---hCCCCCCcceeeccC--CC---CCCCCCCCcc
Q 030565 15 LGSGTGALAIFLRKAM--NLDITTSDYNDQ--EIEDN--IAYNST---TNGITPALPHIKHSW--GD---AFPIPNPDWD 80 (175)
Q Consensus 15 lGcG~G~~~~~l~~~~--~~~v~~~D~s~~--~l~~~--~~~~~~---~~~~~~~~~~~~~~~--~~---~~~~~~~~fD 80 (175)
+|=|.=++++.+++.. +.+++|+-.+.. ..+++ +..+++ ..+. .+.+.+ .. ........||
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~-----~V~~~VDat~l~~~~~~~~~~FD 77 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGV-----TVLHGVDATKLHKHFRLKNQRFD 77 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCC-----ccccCCCCCcccccccccCCcCC
Confidence 5666667777887765 346777766553 22211 112222 2222 111222 11 1223456899
Q ss_pred EEEeCCcccCcc---c-------chHHHHHHHHHHhhcCCCCceeecccc
Q 030565 81 LILASDILLYVK---Q-------YSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 81 ~i~~~~~l~~~~---~-------~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
.|+.+..-.-.. . ..-+..+++...++|+++|.+.++...
T Consensus 78 rIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~ 127 (166)
T PF10354_consen 78 RIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD 127 (166)
T ss_pred EEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 999986631100 0 123456777788899999999987444
No 330
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=93.15 E-value=0.99 Score=34.27 Aligned_cols=95 Identities=16% Similarity=0.172 Sum_probs=58.1
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CCCCCCCCcc
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AFPIPNPDWD 80 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~fD 80 (175)
..++.+||-+|+|. |..+..+++..+.+ |++++.+++.. +.+++. +.. ..+.....+ ......+.+|
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~-~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~vd 228 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKL-ELAKKL----GAT---ETVDPSREDPEAQKEDNPYGFD 228 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHHh----CCe---EEecCCCCCHHHHHHhcCCCCc
Confidence 34678999998763 77778888888887 89999988765 443321 110 011100000 0011234689
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+++.... .. ..+.+..++++++|+++..
T Consensus 229 ~v~~~~~------~~---~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 229 VVIEATG------VP---KTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred EEEECCC------Ch---HHHHHHHHHHhcCCEEEEE
Confidence 9986411 11 5677788999999988765
No 331
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=93.09 E-value=1.4 Score=32.43 Aligned_cols=93 Identities=17% Similarity=0.089 Sum_probs=57.4
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..++.++|=.|+|. |..+..+++..+.+ |++++.+++.. +.+++. +.. ..+ ..... .......+|+|+
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~-~~~~~~----g~~---~~~-~~~~~-~~~~~~~~d~vl 164 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARR-ELAEAL----GPA---DPV-AADTA-DEIGGRGADVVI 164 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHH-HHHHHc----CCC---ccc-cccch-hhhcCCCCCEEE
Confidence 34678888889875 77778888888888 99999988775 333321 110 000 00000 011234689888
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..-. .. ..+.+..++++++|+++..
T Consensus 165 ~~~~------~~---~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 165 EASG------SP---SALETALRLLRDRGRVVLV 189 (277)
T ss_pred EccC------Ch---HHHHHHHHHhcCCcEEEEE
Confidence 6321 11 4667788899999988765
No 332
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.06 E-value=2.9 Score=31.44 Aligned_cols=97 Identities=18% Similarity=0.249 Sum_probs=51.4
Q ss_pred CcEEEeCCCc-cH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhh----------CCC-CC-C----cceeeccCCCC
Q 030565 10 RRCIELGSGT-GA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT----------NGI-TP-A----LPHIKHSWGDA 71 (175)
Q Consensus 10 ~~vLDlGcG~-G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~----------~~~-~~-~----~~~~~~~~~~~ 71 (175)
++|.=||+|. |. ++..+++. |.+|+.+|.+++.++ .+...... .+. .. . ...+ ....+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~-~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i--~~~~~ 79 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-GYDVTIVDVSEEILK-NAMELIESGPYGLRNLVEKGKMSEDEAKAIMARI--RTSTS 79 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-CCeEEEEeCCHHHHH-HHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCc--EeeCC
Confidence 4577789886 43 34445454 789999999998873 32221111 011 00 0 0000 01111
Q ss_pred CCCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCcee
Q 030565 72 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQV 115 (175)
Q Consensus 72 ~~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~ 115 (175)
.. .-...|+|+.+-. ++.+....+++++.+.++|+..+.
T Consensus 80 ~~-~~~~aDlVieav~----e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 80 YE-SLSDADFIVEAVP----EKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred HH-HhCCCCEEEEcCc----CcHHHHHHHHHHHHhhCCCCeEEE
Confidence 11 1134688887522 333335688888888888886544
No 333
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=92.99 E-value=1.1 Score=34.49 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=32.9
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHH
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
..++.+||=.|+|. |..+..+++..+.+|+++|.++..+
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~ 203 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKL 203 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHH
Confidence 44688999999976 8888888888888999999998775
No 334
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=92.85 E-value=0.24 Score=35.55 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=30.8
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCC---CcEEEEeCChHHHHHHHHHHHh
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMN---LDITTSDYNDQEIEDNIAYNST 53 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~---~~v~~~D~s~~~l~~~~~~~~~ 53 (175)
.+-++-|-.||.|.+.-.+.-..+ ..|++.|++++++ +.+++|..
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL-~lA~kNL~ 98 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDAL-ELARKNLS 98 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHH-HHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHH-HHHHHhhh
Confidence 456789999999998866544322 3599999999998 66665543
No 335
>PLN02740 Alcohol dehydrogenase-like
Probab=92.76 E-value=0.42 Score=37.35 Aligned_cols=96 Identities=16% Similarity=0.056 Sum_probs=58.0
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeecc-----CCCCC-CCCC
Q 030565 5 EWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS-----WGDAF-PIPN 76 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~ 76 (175)
...+|++||=+|+|. |..+..+++..|. +|+++|.+++.+ +.+++. +.. ..+... +.+.. ....
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~-~~a~~~----Ga~---~~i~~~~~~~~~~~~v~~~~~ 266 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKF-EKGKEM----GIT---DFINPKDSDKPVHERIREMTG 266 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHH-HHHHHc----CCc---EEEecccccchHHHHHHHHhC
Confidence 345688999999975 8888888888887 699999988765 443321 110 011100 00000 1112
Q ss_pred CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCC-Cceeec
Q 030565 77 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 117 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pg-G~~~~~ 117 (175)
+.+|+|+-... .+ ..+....+.++++ |++++.
T Consensus 267 ~g~dvvid~~G------~~---~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 267 GGVDYSFECAG------NV---EVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred CCCCEEEECCC------Ch---HHHHHHHHhhhcCCCEEEEE
Confidence 25898876422 11 5667777888886 887665
No 336
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=92.70 E-value=1.3 Score=33.56 Aligned_cols=89 Identities=12% Similarity=0.046 Sum_probs=54.6
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++.+||=.|||. |..+..+++..+.+|++++.++... +.++. .+. ... +.. .....+.+|+++..
T Consensus 166 ~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~-~~~~~----~g~----~~~-~~~---~~~~~~~vD~vi~~ 232 (329)
T cd08298 166 KPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQ-ELARE----LGA----DWA-GDS---DDLPPEPLDAAIIF 232 (329)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHH-HHHHH----hCC----cEE-ecc---CccCCCcccEEEEc
Confidence 4566777778764 6666778888799999998887654 44322 111 110 110 01123458887753
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..- . ..++++.+.++++|+++..
T Consensus 233 ~~~------~---~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 233 APV------G---ALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred CCc------H---HHHHHHHHHhhcCCEEEEE
Confidence 221 1 5678899999999998865
No 337
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=92.56 E-value=1.4 Score=33.79 Aligned_cols=98 Identities=20% Similarity=0.241 Sum_probs=56.1
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCcc-E
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWD-L 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD-~ 81 (175)
..++.+||=.|+|+ |..+..+++..+.+ |+++|.+++.. +.++. . +....+............ .....+| +
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~-~~~~~-~---Ga~~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKL-ALAKS-L---GAMQTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHH-HHHHH-c---CCceEecCcccCHHHHHHHhcCCCCCeE
Confidence 34678888889875 88888888888887 79999988765 33322 1 110000000000000000 1123566 5
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+-. . . .+ ..+.+..+.++++|++++.
T Consensus 233 v~d~--~---G-~~---~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 233 ILET--A---G-VP---QTVELAIEIAGPRAQLALV 259 (347)
T ss_pred EEEC--C---C-CH---HHHHHHHHHhhcCCEEEEE
Confidence 5432 1 1 12 5778888999999988876
No 338
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=92.39 E-value=0.18 Score=38.30 Aligned_cols=78 Identities=14% Similarity=0.237 Sum_probs=52.1
Q ss_pred EEEeCCCccHHH-HHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCC-----CCCCC-CCCCccEEEe
Q 030565 12 CIELGSGTGALA-IFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG-----DAFPI-PNPDWDLILA 84 (175)
Q Consensus 12 vLDlGcG~G~~~-~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~fD~i~~ 84 (175)
=+|||.|+..+- +.=+...+....++|+++..+ ..++.|...++....+..+..... +.... .+..||.+++
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~-~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSF-NYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeecccccc-chhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence 378877764332 222223366789999999776 888899999999877777665432 22222 2447999999
Q ss_pred CCcccC
Q 030565 85 SDILLY 90 (175)
Q Consensus 85 ~~~l~~ 90 (175)
+..+|.
T Consensus 185 NPPFfe 190 (419)
T KOG2912|consen 185 NPPFFE 190 (419)
T ss_pred CCchhh
Confidence 988743
No 339
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=92.34 E-value=0.47 Score=37.59 Aligned_cols=88 Identities=11% Similarity=0.135 Sum_probs=55.0
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...|++|+=+|+|. |......++..|.+|+++|.++....+. . ..+. ... ...+. -...|+|+.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A-~----~~G~----~v~--~leea----l~~aDVVIt 256 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEA-A----MDGF----RVM--TMEEA----AKIGDIFIT 256 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHH-H----hcCC----EeC--CHHHH----HhcCCEEEE
Confidence 35799999999996 8888888788899999999988542111 1 1122 000 00011 124588876
Q ss_pred CCcccCcccchHHHHHHH-HHHhhcCCCCceeec
Q 030565 85 SDILLYVKQYSNLIKSLS-VLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~-~l~~~l~pgG~~~~~ 117 (175)
... .. .++. +....+|+|+.++.+
T Consensus 257 aTG------~~---~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 257 ATG------NK---DVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred CCC------CH---HHHHHHHHhcCCCCcEEEEE
Confidence 321 22 4454 478889999877665
No 340
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=92.32 E-value=0.46 Score=37.89 Aligned_cols=87 Identities=9% Similarity=0.097 Sum_probs=54.4
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
+.|++|+=+|+|. |......++..|.+|+.+|.++....+... .+. ... ...+. ....|+|+..
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-----~G~----~v~--~l~ea----l~~aDVVI~a 274 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-----DGF----RVM--TMEEA----AELGDIFVTA 274 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-----cCC----Eec--CHHHH----HhCCCEEEEC
Confidence 4789999999996 777777777778899999998854312211 122 000 01111 1257988764
Q ss_pred CcccCcccchHHHHHHH-HHHhhcCCCCceeec
Q 030565 86 DILLYVKQYSNLIKSLS-VLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~-~l~~~l~pgG~~~~~ 117 (175)
.. .. .++. +....+|+|+.++..
T Consensus 275 TG------~~---~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 275 TG------NK---DVITAEHMEAMKDGAILANI 298 (425)
T ss_pred CC------CH---HHHHHHHHhcCCCCCEEEEc
Confidence 21 22 4454 678889999866655
No 341
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.32 E-value=0.21 Score=39.13 Aligned_cols=98 Identities=17% Similarity=0.185 Sum_probs=55.2
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCC--CCCCCCCCCccEEEe
Q 030565 8 ERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG--DAFPIPNPDWDLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~fD~i~~ 84 (175)
++++|+=+|+|. |..+...++..|.+|+.+|.++..+ +.+.... +. .+..... +.+...-..+|+|+.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~-~~l~~~~---g~-----~v~~~~~~~~~l~~~l~~aDvVI~ 236 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRL-RQLDAEF---GG-----RIHTRYSNAYEIEDAVKRADLLIG 236 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHH-HHHHHhc---Cc-----eeEeccCCHHHHHHHHccCCEEEE
Confidence 567799999984 8888887787788999999988665 3322211 11 0100100 011111236799997
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.-.+.... .+. -+-++..+.++|++.++-.
T Consensus 237 a~~~~g~~-~p~--lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 237 AVLIPGAK-APK--LVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred ccccCCCC-CCc--CcCHHHHhcCCCCCEEEEE
Confidence 54321111 111 1236666778999866654
No 342
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=92.29 E-value=0.48 Score=36.39 Aligned_cols=97 Identities=13% Similarity=0.184 Sum_probs=59.6
Q ss_pred ccCCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCC-CCccE
Q 030565 6 WIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPN-PDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~fD~ 81 (175)
..+|.+||=.|+ |.|.+++.+|+..|..++++--+++.. +.++...... .+.....++.+.. .... ..+|+
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~-~~~~~lGAd~----vi~y~~~~~~~~v~~~t~g~gvDv 214 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKL-ELLKELGADH----VINYREEDFVEQVRELTGGKGVDV 214 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHH-HHHHhcCCCE----EEcCCcccHHHHHHHHcCCCCceE
Confidence 345888998884 569999999999876777777777554 3333222111 1111111122211 1222 36999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+-.--- ..+.+..+.|+++|+++..
T Consensus 215 v~D~vG~----------~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 215 VLDTVGG----------DTFAASLAALAPGGRLVSI 240 (326)
T ss_pred EEECCCH----------HHHHHHHHHhccCCEEEEE
Confidence 9875332 6677788899999988886
No 343
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=92.24 E-value=0.47 Score=36.02 Aligned_cols=97 Identities=8% Similarity=0.043 Sum_probs=57.4
Q ss_pred ccCCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeec-cCCCCC-CCCCCCccE
Q 030565 6 WIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH-SWGDAF-PIPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~fD~ 81 (175)
..+|.+||=.|+ |.|..+..+++..|.+|++++.+++.. +.++. .+....+..... .+.+.. ....+.+|+
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~-~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~gvdv 210 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKV-AYLKK----LGFDVAFNYKTVKSLEETLKKASPDGYDC 210 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHH----cCCCEEEeccccccHHHHHHHhCCCCeEE
Confidence 346788888883 468888999998899999999888664 44332 122000000000 000000 111236888
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+-. . .. ..+....++++++|+++..
T Consensus 211 v~d~--~---G~-----~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 211 YFDN--V---GG-----EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred EEEC--C---CH-----HHHHHHHHHhCcCcEEEEe
Confidence 8753 2 11 3457788999999998865
No 344
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=92.23 E-value=0.55 Score=35.79 Aligned_cols=98 Identities=12% Similarity=0.093 Sum_probs=58.4
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-C-CCCCCccEE
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-P-IPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~fD~i 82 (175)
..++.+||-.|+|. |..+..+|+..+.+|+++..+++.. +.++.. +....+......+.+.+ . .....+|++
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~-~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~vd~v 231 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERL-EFAREL----GADDTINVGDEDVAARLRELTDGEGADVV 231 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHH-HHHHHh----CCCEEecCcccCHHHHHHHHhCCCCCCEE
Confidence 34678899998874 7888888898899999998877664 444321 11000010000000111 1 123458999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+.... .. ..+.++.+.++++|+++..
T Consensus 232 ld~~g------~~---~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 232 IDATG------NP---ASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred EECCC------CH---HHHHHHHHHHhcCCEEEEE
Confidence 87421 11 4567788899999987754
No 345
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=92.19 E-value=0.55 Score=35.87 Aligned_cols=98 Identities=13% Similarity=0.151 Sum_probs=55.9
Q ss_pred ccCCCcEEEeCCC-ccHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-C-CCCCCccE
Q 030565 6 WIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-P-IPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG-~G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~fD~ 81 (175)
..++.+||-.|+| .|..+..+++..+. .+++++.++... +.+++. +....+......+.+.+ . ...+.+|+
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~-~~~~~~----g~~~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERL-DLAKEA----GATDIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHH-HHHHHh----CCcEEEcCCcchHHHHHHHHcCCCCCcE
Confidence 3457888888876 37777888888785 788998877554 333322 11000010000110100 0 12246898
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++.... .. ..+++..+.++++|+++..
T Consensus 240 vld~~g------~~---~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 240 VIEAVG------FE---ETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EEEccC------CH---HHHHHHHHHhhcCCEEEEE
Confidence 886311 11 4677788899999987754
No 346
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=92.18 E-value=0.054 Score=44.51 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=29.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCCh
Q 030565 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYND 41 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~ 41 (175)
.++..||||||.+|.+...+++.+ +.-|+|+|+-|
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 356789999999999999888876 55699999966
No 347
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=91.86 E-value=0.35 Score=36.69 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=33.2
Q ss_pred cEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHh
Q 030565 11 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST 53 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~ 53 (175)
+++||=||.|.+++-+.+.+...+.++|+++... +..+.|..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~-~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDAC-ETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHH-HHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHH-Hhhhhccc
Confidence 6899999999999999777434589999999886 66666654
No 348
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.75 E-value=0.14 Score=38.99 Aligned_cols=102 Identities=17% Similarity=0.072 Sum_probs=58.4
Q ss_pred CCccccCCCcEEEeCCC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeecc-CCCCCCCCCCCc
Q 030565 2 HHREWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS-WGDAFPIPNPDW 79 (175)
Q Consensus 2 ~~~~~~~~~~vLDlGcG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~f 79 (175)
++....+|+++-=+|.| -|.++..+|+.+|.+|+++|-+...=+++++.-.+. .++... -.+......++.
T Consensus 175 k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd-------~fv~~~~d~d~~~~~~~~~ 247 (360)
T KOG0023|consen 175 KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGAD-------VFVDSTEDPDIMKAIMKTT 247 (360)
T ss_pred HHcCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcc-------eeEEecCCHHHHHHHHHhh
Confidence 34455678887777764 799999999999999999999974433444422221 111111 001111112233
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|.++-.-+- . . . ..+..+.+++|++|++++.
T Consensus 248 dg~~~~v~~-~-a-~----~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 248 DGGIDTVSN-L-A-E----HALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred cCcceeeee-c-c-c----cchHHHHHHhhcCCEEEEE
Confidence 433321110 0 1 1 3456688899999999987
No 349
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=91.66 E-value=0.77 Score=35.93 Aligned_cols=94 Identities=18% Similarity=0.176 Sum_probs=55.1
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 8 ERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
++.+||=.|+|. |..+..+|+..|.+|+++|.+++...+.++. .+.. ..+...-.+......+.+|+|+-.-
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~----lGa~---~~i~~~~~~~v~~~~~~~D~vid~~ 250 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR----LGAD---SFLVTTDSQKMKEAVGTMDFIIDTV 250 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh----CCCc---EEEcCcCHHHHHHhhCCCcEEEECC
Confidence 578888889875 8888888898898999999876442122221 1220 0110000000000012478887632
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. .+ ..+....+.++++|+++..
T Consensus 251 G------~~---~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 251 S------AE---HALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred C------cH---HHHHHHHHhhcCCCEEEEE
Confidence 1 11 4677788899999988876
No 350
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=91.66 E-value=0.47 Score=35.93 Aligned_cols=97 Identities=11% Similarity=0.050 Sum_probs=57.4
Q ss_pred ccCCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEE
Q 030565 6 WIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i 82 (175)
..+|.+||=.|+ |.|..+..+++..|.+|++++.+++.. +.++. .+....+.....++.+.. ....+.+|+|
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~-~~l~~----~Ga~~vi~~~~~~~~~~v~~~~~~gvd~v 215 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKV-AWLKE----LGFDAVFNYKTVSLEEALKEAAPDGIDCY 215 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHH----cCCCEEEeCCCccHHHHHHHHCCCCcEEE
Confidence 346788887773 458888889998899999999888654 44432 122000000000110000 1112468988
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-. . . . ..++...++++++|+++..
T Consensus 216 ld~--~---g--~---~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 216 FDN--V---G--G---EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EEC--C---C--H---HHHHHHHHhhccCCEEEEE
Confidence 853 2 1 1 4567889999999988764
No 351
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=91.64 E-value=2.7 Score=36.03 Aligned_cols=157 Identities=12% Similarity=0.097 Sum_probs=83.2
Q ss_pred CcEEEeCCCc--cHHHHHHHHhCCCcEEEEeCChHHHHHHHH-------HHHhhCCCCC-C----cceeeccCCCCCCCC
Q 030565 10 RRCIELGSGT--GALAIFLRKAMNLDITTSDYNDQEIEDNIA-------YNSTTNGITP-A----LPHIKHSWGDAFPIP 75 (175)
Q Consensus 10 ~~vLDlGcG~--G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~-------~~~~~~~~~~-~----~~~~~~~~~~~~~~~ 75 (175)
++|-=||+|+ +.++..++.. |.+|+.+|.+++.++...+ +.......+. . ...+.. ..++. .
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~~~-~ 389 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASK-GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP--TLSYA-G 389 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE--eCCHH-H
Confidence 4678889987 3344445555 8999999999988642211 1111111110 0 001111 11111 1
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-------------CCCCCCCCce-Eee--e
Q 030565 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-------------GTEGLPWPAF-LMS--W 139 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-------------~~~~~~~~~~-~~~--~ 139 (175)
-..-|+|+=+ +. ++.+--.++++++-++++|+..+.-.+....-.. -+++.+.+.. +.. .
T Consensus 390 ~~~aDlViEa-v~---E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~ 465 (714)
T TIGR02437 390 FDNVDIVVEA-VV---ENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIR 465 (714)
T ss_pred hcCCCEEEEc-Cc---ccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecC
Confidence 2357888875 33 5566667999999999999976555533332111 1121111110 111 1
Q ss_pred eccCCCcchhHHHHHHHHcCCeeEEecceEEEEec
Q 030565 140 RRRIGKEDETIFFTSCENAGLEVKHLGSRVYCIKL 174 (175)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~ 174 (175)
......+......+++++.|-+...+.+..-+|.+
T Consensus 466 g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGfi~N 500 (714)
T TIGR02437 466 GEKSSDETIATVVAYASKMGKTPIVVNDCPGFFVN 500 (714)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeCCcccchHH
Confidence 11222233456677788888887777776665554
No 352
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.62 E-value=1.5 Score=32.95 Aligned_cols=99 Identities=15% Similarity=0.223 Sum_probs=50.3
Q ss_pred cEEEeCCCc-c-HHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhh-------CC-CCCC-----cceeeccCCCCCCCC
Q 030565 11 RCIELGSGT-G-ALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT-------NG-ITPA-----LPHIKHSWGDAFPIP 75 (175)
Q Consensus 11 ~vLDlGcG~-G-~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~-------~~-~~~~-----~~~~~~~~~~~~~~~ 75 (175)
+|.=||+|. | .++..+++. +.+|+.+|.+++.+++..+ .... .+ .... ...+ ...++....
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~i--~~~~~~~~~ 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQEQLESAQQ-EIASIFEQGVARGKLTEAARQAALARL--SYSLDLKAA 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHHH-HHHHHHHHHHHcCCCCHHHHHHHHhCe--EEeCcHHHh
Confidence 466678875 3 333445444 8899999999988743222 1110 01 1000 0000 011122111
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-..-|+|+.+-. .+......+++++.+.++|+..+.+.
T Consensus 79 ~~~aD~Vi~avp----e~~~~k~~~~~~l~~~~~~~~il~~~ 116 (288)
T PRK09260 79 VADADLVIEAVP----EKLELKKAVFETADAHAPAECYIATN 116 (288)
T ss_pred hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 234688886522 22223346778888888887655443
No 353
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=91.56 E-value=5.2 Score=30.85 Aligned_cols=96 Identities=10% Similarity=0.021 Sum_probs=55.5
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCC----CCCC-CCCCCcc
Q 030565 8 ERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG----DAFP-IPNPDWD 80 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~fD 80 (175)
++.+||=.|+|. |..+..+++..+. +|++++.+++.. +.+++ .+....+........ .... .....+|
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~-~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d 251 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERL-ELARE----FGADATIDIDELPDPQRRAIVRDITGGRGAD 251 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHH----cCCCeEEcCcccccHHHHHHHHHHhCCCCCc
Confidence 677888888864 7777888888888 899999887653 33321 112000000000000 0001 1123689
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+-..- .. ..+.+..+.++++|+++..
T Consensus 252 ~vid~~g------~~---~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 252 VVIEASG------HP---AAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred EEEECCC------Ch---HHHHHHHHHhccCCEEEEE
Confidence 8886421 11 4567788999999988765
No 354
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=91.55 E-value=0.63 Score=35.36 Aligned_cols=110 Identities=24% Similarity=0.243 Sum_probs=60.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC---------------------CCcEEEEeCChHH-HHHHHHHHHhhCCCC-------
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM---------------------NLDITTSDYNDQE-IEDNIAYNSTTNGIT------- 58 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~---------------------~~~v~~~D~s~~~-l~~~~~~~~~~~~~~------- 58 (175)
+..+||=||.|.|.=-..++... ..+|+++|+.++. +...+...+......
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 35789999999977665555433 0379999999964 224444444433110
Q ss_pred ------CCcceeeccCCCCCCCCC---------CCccEEEeCCccc--CcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 59 ------PALPHIKHSWGDAFPIPN---------PDWDLILASDILL--YVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 59 ------~~~~~~~~~~~~~~~~~~---------~~fD~i~~~~~l~--~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...=.+.+...|.+.... .+.++|.....+. +..+...-.+++..+-..++||..+.|+
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 000011111122221111 1344444432221 2233455678888899999999988887
No 355
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.37 E-value=1.1 Score=34.21 Aligned_cols=145 Identities=12% Similarity=0.010 Sum_probs=74.3
Q ss_pred ccccCCCcEEEeCCCc-cHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC-----CCCCC
Q 030565 4 REWIERRRCIELGSGT-GALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-----FPIPN 76 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 76 (175)
....+|.+|.=+|+|. |.....-++.. +.+++|+|++++-. +.++.-... +-++.. +..+. .+.-+
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf-~~ak~fGaT----e~iNp~--d~~~~i~evi~EmTd 260 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKF-EKAKEFGAT----EFINPK--DLKKPIQEVIIEMTD 260 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHH-HHHHhcCcc----eecChh--hccccHHHHHHHHhc
Confidence 3456788899999986 66666655544 56799999999886 444432221 111111 11110 01124
Q ss_pred CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCC-Cceeec-cccCCCCC----CCCCCCCCceEeeeeccCCCcchhH
Q 030565 77 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH-LTKNEQGE----GTEGLPWPAFLMSWRRRIGKEDETI 150 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pg-G~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (175)
+.+|+-+- ++ . .. .+|++.+....+| |.-++. ........ ..+.....+.-..+..+.+.++...
T Consensus 261 gGvDysfE--c~---G-~~---~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~GR~~~Gs~FGG~K~~~~iP~ 331 (375)
T KOG0022|consen 261 GGVDYSFE--CI---G-NV---STMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLVTGRTWKGSAFGGFKSKSDIPK 331 (375)
T ss_pred CCceEEEE--ec---C-CH---HHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhccccEEEEEecccccchhhhhH
Confidence 56666542 11 1 22 6777788888888 766555 22111111 1122221222223344444545556
Q ss_pred HHHHHHHcCCeeEE
Q 030565 151 FFTSCENAGLEVKH 164 (175)
Q Consensus 151 ~~~~~~~~g~~~~~ 164 (175)
+.+...+..|.+..
T Consensus 332 lV~~y~~~~l~ld~ 345 (375)
T KOG0022|consen 332 LVKDYMKKKLNLDE 345 (375)
T ss_pred HHHHHHhCccchhh
Confidence 66665555555443
No 356
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=91.32 E-value=0.39 Score=35.65 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=28.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC------CCcEEEEeCCh
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM------NLDITTSDYND 41 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~------~~~v~~~D~s~ 41 (175)
+...++|+|||.|.++..+++.. ...++.+|-..
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 45679999999999999998865 34689999965
No 357
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=91.31 E-value=1.3 Score=34.24 Aligned_cols=95 Identities=19% Similarity=0.159 Sum_probs=54.5
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.+|.++|=.|+|. |..+..+++..+.++++++.+++......+ . .+.. ..+.....+........+|+++-.
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~-~---~Ga~---~~i~~~~~~~~~~~~~~~D~vid~ 251 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALE-H---LGAD---DYLVSSDAAEMQEAADSLDYIIDT 251 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-h---cCCc---EEecCCChHHHHHhcCCCcEEEEC
Confidence 3578888888864 888888888888889988887755322222 1 1220 000000000000011247877753
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-. .. ..++...++++++|+++..
T Consensus 252 ~g------~~---~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 252 VP------VF---HPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred CC------ch---HHHHHHHHHhccCCEEEEE
Confidence 11 11 4667788899999988775
No 358
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.28 E-value=2.4 Score=32.25 Aligned_cols=97 Identities=13% Similarity=0.013 Sum_probs=53.8
Q ss_pred CcEEEeCCCc-cH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHH--HhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 10 RRCIELGSGT-GA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYN--STTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 10 ~~vLDlGcG~-G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.+|+=+|+|. |. ++..|++. |.+|+.++-+.+.+ +..+++ ...... .. ...+......+...+.||+|+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~~~~-~~i~~~~Gl~i~~~-g~--~~~~~~~~~~~~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA-GLPVRLILRDRQRL-AAYQQAGGLTLVEQ-GQ--ASLYAIPAETADAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC-CCCeEEEEechHHH-HHHhhcCCeEEeeC-Cc--ceeeccCCCCcccccccCEEEEE
Confidence 4688899996 55 55666554 78999999987555 443321 111000 00 01111101111123479987764
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-= .. +...+++.+...+.++..++..
T Consensus 78 vK---~~---~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 78 CK---AY---DAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred CC---HH---hHHHHHHHHHhhCCCCCEEEEE
Confidence 11 12 2347888899999998766555
No 359
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=91.17 E-value=0.89 Score=34.74 Aligned_cols=94 Identities=9% Similarity=0.111 Sum_probs=54.7
Q ss_pred CcEEEeCC--CccHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEEEeC
Q 030565 10 RRCIELGS--GTGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILAS 85 (175)
Q Consensus 10 ~~vLDlGc--G~G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i~~~ 85 (175)
.+||=.|+ |.|..+..+++..|. +|++++.+++.. +.++... +....+.....++.+.. ....+.+|+|+-.
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~-~~~~~~l---Ga~~vi~~~~~~~~~~i~~~~~~gvd~vid~ 231 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKC-QLLKSEL---GFDAAINYKTDNVAERLRELCPEGVDVYFDN 231 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHhc---CCcEEEECCCCCHHHHHHHHCCCCceEEEEC
Confidence 78888875 468888889998888 799999888664 3333211 11000000000110000 1112468988853
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. .. ..+.+..++++++|+++..
T Consensus 232 --~---g~-----~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 232 --V---GG-----EISDTVISQMNENSHIILC 253 (345)
T ss_pred --C---Cc-----HHHHHHHHHhccCCEEEEE
Confidence 2 11 2346788899999998864
No 360
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=91.14 E-value=5.6 Score=30.42 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=56.4
Q ss_pred CcEEEeCCCc--cHHHHHHHHhCCCcEEEEeCChHHHHHHH-------HHHHhhCCCCCCcceeeccCCC-CCCC-CCCC
Q 030565 10 RRCIELGSGT--GALAIFLRKAMNLDITTSDYNDQEIEDNI-------AYNSTTNGITPALPHIKHSWGD-AFPI-PNPD 78 (175)
Q Consensus 10 ~~vLDlGcG~--G~~~~~l~~~~~~~v~~~D~s~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~ 78 (175)
++|-=||+|+ +..+..+|. .|..|+..|+++++++... .+...............+.... .... .-..
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~-~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~~ 82 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFAL-AGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALKD 82 (307)
T ss_pred cEEEEEcccchhHHHHHHHhh-cCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhcc
Confidence 4577788887 333444545 4799999999988763221 1112211111100000011101 0010 1235
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030565 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
.|+|+=+-. ++.+--.++++++-.+++|+..|.-.+
T Consensus 83 ~DlVIEAv~----E~levK~~vf~~l~~~~~~~aIlASNT 118 (307)
T COG1250 83 ADLVIEAVV----EDLELKKQVFAELEALAKPDAILASNT 118 (307)
T ss_pred CCEEEEecc----ccHHHHHHHHHHHHhhcCCCcEEeecc
Confidence 688876533 555556799999999999997555553
No 361
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.04 E-value=1.2 Score=34.27 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=57.1
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CC-CCCCccE
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PI-PNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~fD~ 81 (175)
..++++||=.|+|. |..+..+++..+.. |+++|.+++.. +.++. .+....+.....++.... .. ....+|+
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~-~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRV-ELAKE----YGATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHH----cCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 34578888888874 77778888887874 99999988664 33332 111000000000000000 11 1236898
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+-... .. ..+.++.+.++++|+++..
T Consensus 239 vld~~g------~~---~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 239 VIIAGG------GQ---DTFEQALKVLKPGGTISNV 265 (351)
T ss_pred EEECCC------CH---HHHHHHHHHhhcCCEEEEe
Confidence 885321 11 5678889999999988754
No 362
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=90.82 E-value=0.39 Score=37.74 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=39.9
Q ss_pred CCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030565 74 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
.+++++|.++..|.+ .|.+.+...+.++++.+.++|||++++-...
T Consensus 291 ~~~~s~~~~vL~D~~-Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~ 336 (380)
T PF11899_consen 291 LPPGSFDRFVLSDHM-DWMDPEQLNEEWQELARTARPGARVLWRSAA 336 (380)
T ss_pred CCCCCeeEEEecchh-hhCCHHHHHHHHHHHHHHhCCCCEEEEeeCC
Confidence 457899999999998 7777899999999999999999999885333
No 363
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=90.64 E-value=1.2 Score=30.05 Aligned_cols=43 Identities=14% Similarity=0.281 Sum_probs=25.7
Q ss_pred EeCCCcc--HHHHHHH-HhC--CCcEEEEeCChHHHHHHHHHH--HhhCCC
Q 030565 14 ELGSGTG--ALAIFLR-KAM--NLDITTSDYNDQEIEDNIAYN--STTNGI 57 (175)
Q Consensus 14 DlGcG~G--~~~~~l~-~~~--~~~v~~~D~s~~~l~~~~~~~--~~~~~~ 57 (175)
|+|++.| .....+. +.. ...|+++|++|..+ +.++++ ...+..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~-~~l~~~~~~~l~~~ 50 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNF-EKLKRNLNLALNDK 50 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHH-HHHHHH--HHHTTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHH-HHHhHHHHHHhcCC
Confidence 8999999 6655543 222 56799999999886 666666 555433
No 364
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=90.53 E-value=3.1 Score=31.80 Aligned_cols=98 Identities=14% Similarity=0.079 Sum_probs=57.8
Q ss_pred ccCCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceee-ccCCCC-CCCCCCCccE
Q 030565 6 WIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK-HSWGDA-FPIPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~fD~ 81 (175)
..+|.+||=.|+ |.|..+..+++..|.+|++++.+++.. +.++... +....+..-. .++.+. .....+.+|+
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~-~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gvd~ 224 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKV-DLLKNKL---GFDDAFNYKEEPDLDAALKRYFPNGIDI 224 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHhc---CCceeEEcCCcccHHHHHHHhCCCCcEE
Confidence 446788888886 458888889998899999998887654 3333211 1100000000 000000 0111246888
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+-. . . . ..+.+..++++++|+++..
T Consensus 225 v~d~--~---g--~---~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 225 YFDN--V---G--G---KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred EEEC--C---C--H---HHHHHHHHHhccCcEEEEe
Confidence 8753 2 1 1 5577888999999988865
No 365
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.52 E-value=0.56 Score=30.20 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=26.0
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChH
Q 030565 8 ERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQ 42 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~ 42 (175)
..++|.|+|-|- =..+..++++ |..|+++|+++.
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~ 47 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK 47 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc
Confidence 346899999886 4445667665 899999999874
No 366
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=90.46 E-value=0.57 Score=30.72 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=43.2
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 8 ERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
..++|.|+|-|. -..+..|++. |..|+++|+++... . .+. +.+.-+..+.....=...|+|.+.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~~a--------~-~g~----~~v~DDif~P~l~iY~~a~lIYSi- 77 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPRKA--------P-EGV----NFVVDDIFNPNLEIYEGADLIYSI- 77 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S-------------ST----TEE---SSS--HHHHTTEEEEEEE-
T ss_pred CCCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccccc--------c-cCc----ceeeecccCCCHHHhcCCcEEEEe-
Confidence 346899999996 5666677665 79999999988521 1 122 233222211100000145777774
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-.+++++..+-++.+.+. .-+++.
T Consensus 78 -----RPP~El~~~il~lA~~v~--adlii~ 101 (127)
T PF03686_consen 78 -----RPPPELQPPILELAKKVG--ADLIIR 101 (127)
T ss_dssp -----S--TTSHHHHHHHHHHHT---EEEEE
T ss_pred -----CCChHHhHHHHHHHHHhC--CCEEEE
Confidence 334566677777777655 344554
No 367
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=90.39 E-value=3.2 Score=31.76 Aligned_cols=98 Identities=12% Similarity=0.160 Sum_probs=57.2
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccC---CCCC--CCCCCC
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW---GDAF--PIPNPD 78 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~ 78 (175)
..++.+||=.|+|. |..+..+++..|.+ |++++.++... +.++. . +....+......+ .+.+ ......
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~-~~~~~-~---g~~~vi~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRL-EFAKE-L---GATHTVNVRTEDTPESAEKIAELLGGKG 234 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHH-c---CCcEEeccccccchhHHHHHHHHhCCCC
Confidence 34677888888765 77788888888887 99998887654 33322 1 1100001000000 0000 112345
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+|+-...- . ..+++..++++++|+++..
T Consensus 235 ~d~vld~~g~------~---~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 235 PDVVIECTGA------E---SCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CCEEEECCCC------H---HHHHHHHHHhhcCCEEEEE
Confidence 8999874221 1 3667788999999988764
No 368
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=90.36 E-value=1.1 Score=33.99 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=54.9
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...+++|+=+|.|. |......++..+.+|+.+|.++... +.++ ..+. ..+.+ +.+...-..+|+|+.
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~-~~~~----~~G~----~~~~~---~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHL-ARIT----EMGL----SPFHL---SELAEEVGKIDIIFN 216 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHH----HcCC----eeecH---HHHHHHhCCCCEEEE
Confidence 34689999999985 7766666677789999999998653 3322 1122 11111 111111236899998
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
.-.. . -+-+++.+.++|++.++-..
T Consensus 217 t~p~-------~--~i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 217 TIPA-------L--VLTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CCCh-------h--hhhHHHHHcCCCCcEEEEEc
Confidence 5211 1 23356777889987655443
No 369
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=90.34 E-value=4.8 Score=32.94 Aligned_cols=107 Identities=8% Similarity=0.082 Sum_probs=61.6
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC--C---CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---C-CCCC
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM--N---LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---I-PNPD 78 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~--~---~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~ 78 (175)
++..+.|.-||+|.+.....+.. + ..+++.+..+.+. ..+.-+....+... ......+++.+. . ....
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~-~~a~mnm~l~~~~~--~t~~~~~~dtl~~~d~~~~~~ 293 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTY-NLCRMNMILHNIDY--ANFNIINADTLTTKEWENENG 293 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHH-HHHHHHHHHcCCCc--cccCcccCCcCCCcccccccc
Confidence 45789999999999886544322 1 3489999999886 55555544433311 111111222221 1 2346
Q ss_pred ccEEEeCCcccC-cc---------------------cchHHHHHHHHHHhhcCCCCceeec
Q 030565 79 WDLILASDILLY-VK---------------------QYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~-~~---------------------~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
||+|+++..+-. |. ....-..++......|++||+-.++
T Consensus 294 ~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 294 FEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred CCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 888887653211 10 0112346777788889999876555
No 370
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=90.25 E-value=1.4 Score=34.20 Aligned_cols=98 Identities=15% Similarity=0.112 Sum_probs=57.0
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC-CCCCCCCccEE
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPIPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fD~i 82 (175)
..++++||=.|+|. |..+..+++..|. .|+++|.++... +.++.. +....+.....+..+. .......+|+|
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~-~~~~~~----g~~~~i~~~~~~~~~~v~~~~~~~~d~v 258 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRL-ELAKEL----GATHVINPKEEDLVAAIREITGGGVDYA 258 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHc----CCcEEecCCCcCHHHHHHHHhCCCCcEE
Confidence 34578888888865 8888888888888 499999988664 333221 1100000000000000 01113468988
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-.-. .+ ..+.++.++++++|+++..
T Consensus 259 ld~~g------~~---~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 259 LDTTG------VP---AVIEQAVDALAPRGTLALV 284 (365)
T ss_pred EECCC------Cc---HHHHHHHHHhccCCEEEEe
Confidence 86421 11 4567888899999988765
No 371
>PRK11524 putative methyltransferase; Provisional
Probab=90.09 E-value=0.53 Score=35.40 Aligned_cols=44 Identities=20% Similarity=0.098 Sum_probs=30.0
Q ss_pred CCCCCccEEEeCCcccCcc-------------cchHHHHHHHHHHhhcCCCCceeec
Q 030565 74 IPNPDWDLILASDILLYVK-------------QYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l~~~~-------------~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.++++||+|++...++-.. ...-+...+.++.++|||||.+++.
T Consensus 23 l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 23 IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3456888888865532100 0112357899999999999999886
No 372
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=90.02 E-value=3.8 Score=31.76 Aligned_cols=98 Identities=16% Similarity=0.100 Sum_probs=56.4
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeec--cCCCCC-CCCCCCcc
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH--SWGDAF-PIPNPDWD 80 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~fD 80 (175)
..+|.+||=.|+|. |..+..+++..+. +|+++|.++... +.++.. +....+..... .+.+.. ....+.+|
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~-~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~g~d 256 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKF-EKAKEF----GATDFINPKDSDKPVSEVIREMTGGGVD 256 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHc----CCCcEeccccccchHHHHHHHHhCCCCC
Confidence 45678888889874 7777888888887 699999988664 443321 11000010000 000000 01123588
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCC-Cceeec
Q 030565 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pg-G~~~~~ 117 (175)
+|+-.-. .. ..+.+..+.++++ |+++..
T Consensus 257 ~vid~~g------~~---~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 257 YSFECTG------NA---DLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred EEEECCC------Ch---HHHHHHHHhcccCCCEEEEE
Confidence 8885321 11 5667788889885 888765
No 373
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=90.00 E-value=1.5 Score=30.67 Aligned_cols=46 Identities=17% Similarity=0.108 Sum_probs=33.3
Q ss_pred CCCCCccEEEeCCcccCccc---------chHHHHHHHHHHhhcCCCCceeeccc
Q 030565 74 IPNPDWDLILASDILLYVKQ---------YSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l~~~~~---------~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
...+.+|+|+++.+++.... .+++.+++..+..+|+|+..++..+.
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt 100 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTA 100 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecC
Confidence 34568999999999853332 23577888888888889887777643
No 374
>PLN02494 adenosylhomocysteinase
Probab=89.95 E-value=0.8 Score=36.98 Aligned_cols=88 Identities=11% Similarity=0.112 Sum_probs=54.8
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
+.|++|+=+|+|. |......++.+|.+|+++|.++....+... .+. ... ...+. -...|+|+..
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~-----~G~----~vv--~leEa----l~~ADVVI~t 316 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALM-----EGY----QVL--TLEDV----VSEADIFVTT 316 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHh-----cCC----eec--cHHHH----HhhCCEEEEC
Confidence 5789999999996 877777777778999999998854212211 112 000 01011 1246888863
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.-- .. -+..+.++.+|+|+.++-+
T Consensus 317 TGt------~~--vI~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 317 TGN------KD--IIMVDHMRKMKNNAIVCNI 340 (477)
T ss_pred CCC------cc--chHHHHHhcCCCCCEEEEc
Confidence 221 11 2337788899999876665
No 375
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=89.87 E-value=1.4 Score=33.90 Aligned_cols=98 Identities=17% Similarity=0.216 Sum_probs=57.0
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CC-CCCCccE
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PI-PNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~fD~ 81 (175)
..++.+||=.|+|. |..+..+++..+. .|++++.++... +.++.. +....+.....++.+.+ .. ..+.+|+
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~-~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~~d~ 244 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARR-ELAEEL----GATIVLDPTEVDVVAEVRKLTGGGGVDV 244 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHh----CCCEEECCCccCHHHHHHHHhCCCCCCE
Confidence 34577888888764 7777888888788 799999888764 443321 22000010000110001 11 1235899
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+-...- . ..++...+.++++|+++..
T Consensus 245 vid~~g~------~---~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 245 SFDCAGV------Q---ATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred EEECCCC------H---HHHHHHHHhccCCCEEEEE
Confidence 8864221 1 4667888899999987765
No 376
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=89.55 E-value=2.2 Score=33.61 Aligned_cols=106 Identities=15% Similarity=0.135 Sum_probs=59.0
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCc-EEEEeCChH---HHH---HHHHHHHhhCCCCCCcceeeccCCCCCC-----
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLD-ITTSDYNDQ---EIE---DNIAYNSTTNGITPALPHIKHSWGDAFP----- 73 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~-v~~~D~s~~---~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 73 (175)
..+++..-|+|+|.|.+....+...++. -+|+++.+. +.+ +..++....-+. ....+....++..+
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk--~~~~~~~i~gsf~~~~~v~ 267 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK--KPNKIETIHGSFLDPKRVT 267 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCC--CcCceeecccccCCHHHHH
Confidence 4567889999999999998776654433 455555442 211 112222222222 11222222222221
Q ss_pred CCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 74 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.....-++|+++++. .+. ++..-+.+++.-+++|.+++-.
T Consensus 268 eI~~eatvi~vNN~~---Fdp-~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 268 EIQTEATVIFVNNVA---FDP-ELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred HHhhcceEEEEeccc---CCH-HHHHhhHHHHhhCCCcceEecc
Confidence 123356899999887 322 3334455999999998877665
No 377
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.35 E-value=6.2 Score=28.22 Aligned_cols=37 Identities=8% Similarity=0.205 Sum_probs=25.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHh---CCCcEEEEeCChHHH
Q 030565 7 IERRRCIELGSGTGALAIFLRKA---MNLDITTSDYNDQEI 44 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~---~~~~v~~~D~s~~~l 44 (175)
+++++||=.|++ |.++..+++. .|.+|++++-+++..
T Consensus 3 ~~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~ 42 (238)
T PRK05786 3 LKGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKL 42 (238)
T ss_pred cCCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 357889989875 4344333332 388999999988665
No 378
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.28 E-value=4 Score=35.00 Aligned_cols=157 Identities=11% Similarity=0.062 Sum_probs=82.1
Q ss_pred CcEEEeCCCc--cHHHHHHHHhCCCcEEEEeCChHHHHHHH-------HHHHhhCCCCCC-----cceeeccCCCCCCCC
Q 030565 10 RRCIELGSGT--GALAIFLRKAMNLDITTSDYNDQEIEDNI-------AYNSTTNGITPA-----LPHIKHSWGDAFPIP 75 (175)
Q Consensus 10 ~~vLDlGcG~--G~~~~~l~~~~~~~v~~~D~s~~~l~~~~-------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 75 (175)
++|.=||+|+ ...+..++.. |.+|+..|.+++.++... .+.......... ...+. ...++. .
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~--~~~~~~-~ 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK-GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIR--PTLDYA-G 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeE--EeCCHH-H
Confidence 5688899997 3334445555 899999999998864221 111221111100 01111 111211 1
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-------------CCCCCCCCc-eEeee--
Q 030565 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-------------GTEGLPWPA-FLMSW-- 139 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-------------~~~~~~~~~-~~~~~-- 139 (175)
-..-|+|+=+ +. ++.+--+++++++-+.++|+..+...+....-.. .+++.+.+. -+..-
T Consensus 390 ~~~aDlViEa-v~---E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~ 465 (715)
T PRK11730 390 FERVDVVVEA-VV---ENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIR 465 (715)
T ss_pred hcCCCEEEec-cc---CcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeC
Confidence 2356888865 22 5556667999999999999975555433332111 112111111 01111
Q ss_pred eccCCCcchhHHHHHHHHcCCeeEEecceEEEEec
Q 030565 140 RRRIGKEDETIFFTSCENAGLEVKHLGSRVYCIKL 174 (175)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~ 174 (175)
.............++++..|.....+.+..-+|.+
T Consensus 466 g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGfv~n 500 (715)
T PRK11730 466 GEKTSDETIATVVAYASKMGKTPIVVNDCPGFFVN 500 (715)
T ss_pred CCCCCHHHHHHHHHHHHHhCCceEEecCcCchhHH
Confidence 11122223456677788888887777766555543
No 379
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=89.11 E-value=1.7 Score=33.12 Aligned_cols=97 Identities=19% Similarity=0.140 Sum_probs=56.4
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+||=.|+|. |..+..+++..|.+|++++.+++.. +.++.. +....+.....++...... .+.+|+++.
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~-~~~~~~----g~~~~i~~~~~~~~~~~~~-~~~~d~vi~ 234 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKA-DLARKL----GAHHYIDTSKEDVAEALQE-LGGAKLILA 234 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHH-HHHHHc----CCcEEecCCCccHHHHHHh-cCCCCEEEE
Confidence 34577888888764 7777888888898999999987664 443321 1100000000000000000 124788875
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
... .. ..+....+.++++|+++..
T Consensus 235 ~~g------~~---~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 235 TAP------NA---KAISALVGGLAPRGKLLIL 258 (333)
T ss_pred CCC------ch---HHHHHHHHHcccCCEEEEE
Confidence 311 11 5677788899999988765
No 380
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=89.07 E-value=6 Score=31.20 Aligned_cols=95 Identities=19% Similarity=0.117 Sum_probs=60.8
Q ss_pred cEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcccC
Q 030565 11 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLY 90 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~ 90 (175)
+|+=++=.-|.++..++.. +.. ...|. ...+...+.|.+.+++... .+ .+.+..+...+.+|+|+.- .
T Consensus 47 ~~~i~nd~fGal~~~l~~~-~~~-~~~ds--~~~~~~~~~n~~~n~~~~~--~~--~~~~~~~~~~~~~d~vl~~----~ 114 (378)
T PRK15001 47 PVLILNDAFGALSCALAEH-KPY-SIGDS--YISELATRENLRLNGIDES--SV--KFLDSTADYPQQPGVVLIK----V 114 (378)
T ss_pred CEEEEcCchhHHHHHHHhC-CCC-eeehH--HHHHHHHHHHHHHcCCCcc--cc--eeecccccccCCCCEEEEE----e
Confidence 7899999999999999753 322 22232 2333666778888776221 11 1112233334568998873 3
Q ss_pred cccchHHHHHHHHHHhhcCCCCceeec
Q 030565 91 VKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 91 ~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.-....+...+..+.+++.||+.+++.
T Consensus 115 PK~~~~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 115 PKTLALLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred CCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 345566778888999999999987654
No 381
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=88.97 E-value=4.7 Score=30.40 Aligned_cols=91 Identities=13% Similarity=0.192 Sum_probs=56.9
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+||=.|+|. |..+..+++..|.+|++++.+++.. +.++. .+. ... ....+. ...+.+|+++-
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~-~~~~~----~g~----~~~-~~~~~~--~~~~~~d~vid 220 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKL-ALARR----LGV----ETV-LPDEAE--SEGGGFDVVVE 220 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHH-HHHHH----cCC----cEE-eCcccc--ccCCCCCEEEE
Confidence 34577888888764 7777778888898999999888765 44443 122 111 111111 23346898886
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.. . .. ..++...++++++|+++..
T Consensus 221 ~~-----g-~~---~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 221 AT-----G-SP---SGLELALRLVRPRGTVVLK 244 (319)
T ss_pred CC-----C-Ch---HHHHHHHHHhhcCCEEEEE
Confidence 31 1 11 4567788889999988863
No 382
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=88.66 E-value=4.4 Score=34.90 Aligned_cols=157 Identities=12% Similarity=0.063 Sum_probs=82.0
Q ss_pred CcEEEeCCCc-c-HHHHHHHHhCCCcEEEEeCChHHHHHHHH-------HHHhhCCCCC-C----cceeeccCCCCCCCC
Q 030565 10 RRCIELGSGT-G-ALAIFLRKAMNLDITTSDYNDQEIEDNIA-------YNSTTNGITP-A----LPHIKHSWGDAFPIP 75 (175)
Q Consensus 10 ~~vLDlGcG~-G-~~~~~l~~~~~~~v~~~D~s~~~l~~~~~-------~~~~~~~~~~-~----~~~~~~~~~~~~~~~ 75 (175)
++|-=||+|+ | .++..++.. |.+|+..|.+++.++...+ +.......+. . ...+. ...++. .
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~-G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~--~~~~~~-~ 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK-GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLT--PTLDYS-G 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC-CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE--EeCCHH-H
Confidence 4678889986 3 334445554 8999999999988743211 1111111110 0 00111 111111 1
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-------------CCCCCCCCce-Eee--e
Q 030565 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-------------GTEGLPWPAF-LMS--W 139 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-------------~~~~~~~~~~-~~~--~ 139 (175)
-..-|+|+=+ +. ++.+--.++++++-++++|+..+...+....-.. -+++.+.... +.. .
T Consensus 412 ~~~aDlViEA-v~---E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~ 487 (737)
T TIGR02441 412 FKNADMVIEA-VF---EDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIIT 487 (737)
T ss_pred hccCCeehhh-cc---ccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeC
Confidence 2356777764 33 5555667999999999999986655543332111 1222221110 111 1
Q ss_pred eccCCCcchhHHHHHHHHcCCeeEEecceEEEEec
Q 030565 140 RRRIGKEDETIFFTSCENAGLEVKHLGSRVYCIKL 174 (175)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~ 174 (175)
....+.+.......++++.|-....+.+..-+|.+
T Consensus 488 g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~N 522 (737)
T TIGR02441 488 HDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTT 522 (737)
T ss_pred CCCCCHHHHHHHHHHHHHCCCeEEEECCcCCchHH
Confidence 11222223456667778888887777776655544
No 383
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=88.27 E-value=2 Score=32.39 Aligned_cols=94 Identities=17% Similarity=0.267 Sum_probs=54.7
Q ss_pred CCcEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 9 RRRCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 9 ~~~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
+.+||=.|+ | .|..+..+|+..|.+|++++.+++.. +.++.. +....+.................+|+|+-.
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~-~~~~~~----g~~~v~~~~~~~~~~~~~~~~~~~d~vld~- 220 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAA-DYLKKL----GAKEVIPREELQEESIKPLEKQRWAGAVDP- 220 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHH-HHHHHc----CCCEEEcchhHHHHHHHhhccCCcCEEEEC-
Confidence 567888887 4 48777888888899999999888664 443321 110000000000000001123458887743
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. .. ..+.+..++++++|+++..
T Consensus 221 -~---g~-----~~~~~~~~~l~~~G~~i~~ 242 (326)
T cd08289 221 -V---GG-----KTLAYLLSTLQYGGSVAVS 242 (326)
T ss_pred -C---cH-----HHHHHHHHHhhcCCEEEEE
Confidence 2 11 4567788899999988776
No 384
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=88.22 E-value=2.5 Score=32.28 Aligned_cols=97 Identities=16% Similarity=0.197 Sum_probs=56.6
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-CCCCccEEE
Q 030565 7 IERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~i~ 83 (175)
.++.+||-.|+|. |..+..+++..+.+ |++++-++... +.++.. +....+............. ....+|+++
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~-~~l~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~vl 232 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKL-AVAREL----GADDTINPKEEDVEKVRELTEGRGADLVI 232 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHc----CCCEEecCccccHHHHHHHhCCCCCCEEE
Confidence 4677899998865 77778888888887 99998887664 443321 1100000000000000111 123589988
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..- . .. ..+..+.++++++|+++..
T Consensus 233 d~~-----g-~~---~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 233 EAA-----G-SP---ATIEQALALARPGGKVVLV 257 (343)
T ss_pred ECC-----C-CH---HHHHHHHHHhhcCCEEEEE
Confidence 641 1 11 4667788999999987765
No 385
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=87.96 E-value=2.2 Score=33.62 Aligned_cols=103 Identities=12% Similarity=0.040 Sum_probs=56.8
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC----C-C-CCCC
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA----F-P-IPNP 77 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~-~~~~ 77 (175)
..++++||=.|+|. |..+..+++..+.+ |+++|.++..+ +.+++. +. ..+....... . . ....
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~-~~a~~~----Ga----~~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARL-AQARSF----GC----ETVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH-HHHHHc----CC----eEEecCCcccHHHHHHHHcCCC
Confidence 34567776688875 88888888877776 56678877554 333321 11 1111000000 0 0 1123
Q ss_pred CccEEEeCCccc-----CcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 78 DWDLILASDILL-----YVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~-----~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+|+++-.---. +.....+...++++..+.++++|++++.
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred CCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 589888643210 0000011124788899999999999886
No 386
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=87.85 E-value=4.4 Score=30.34 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=45.8
Q ss_pred cEEEeCCCc--cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030565 11 RCIELGSGT--GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 11 ~vLDlGcG~--G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
+|.=||+|. |.++..+++. +.+|+++|.++..+++.... +. +... . .... .-...|+|+.+-.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~~~~~~a~~~-----g~---~~~~---~-~~~~-~~~~aDlVilavp- 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRESTCERAIER-----GL---VDEA---S-TDLS-LLKDCDLVILALP- 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHC-----CC---cccc---c-CCHh-HhcCCCEEEEcCC-
Confidence 355578775 4555666554 77899999998776332221 11 0000 0 1111 1235688887633
Q ss_pred cCcccchHHHHHHHHHHhhcCCCC
Q 030565 89 LYVKQYSNLIKSLSVLLKSYKPKD 112 (175)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~~l~pgG 112 (175)
.....++++++...++|+.
T Consensus 67 -----~~~~~~~~~~l~~~l~~~~ 85 (279)
T PRK07417 67 -----IGLLLPPSEQLIPALPPEA 85 (279)
T ss_pred -----HHHHHHHHHHHHHhCCCCc
Confidence 2234467788888887764
No 387
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=87.83 E-value=1.4 Score=35.71 Aligned_cols=88 Identities=8% Similarity=0.054 Sum_probs=53.7
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
.+.|++|+=+|+|. |......++.+|.+|+.+|.++....+... .+. ... . +...-...|+|+.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~-----~G~----~~~--~----leell~~ADIVI~ 315 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM-----EGY----QVV--T----LEDVVETADIFVT 315 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh-----cCc----eec--c----HHHHHhcCCEEEE
Confidence 46799999999996 776666667778899999988754211111 122 011 0 1111235798887
Q ss_pred CCcccCcccchHHHHHH-HHHHhhcCCCCceeec
Q 030565 85 SDILLYVKQYSNLIKSL-SVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l-~~l~~~l~pgG~~~~~ 117 (175)
+.. .. .++ .+....+|||+.++-+
T Consensus 316 atG------t~---~iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 316 ATG------NK---DIITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred CCC------cc---cccCHHHHhccCCCcEEEEc
Confidence 522 11 334 4678889999866555
No 388
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=87.75 E-value=4.5 Score=34.65 Aligned_cols=157 Identities=11% Similarity=0.085 Sum_probs=81.4
Q ss_pred CcEEEeCCCc--cHHHHHHHHhCCCcEEEEeCChHHHHHHH---HHH----HhhCCCCC-----CcceeeccCCCCCCCC
Q 030565 10 RRCIELGSGT--GALAIFLRKAMNLDITTSDYNDQEIEDNI---AYN----STTNGITP-----ALPHIKHSWGDAFPIP 75 (175)
Q Consensus 10 ~~vLDlGcG~--G~~~~~l~~~~~~~v~~~D~s~~~l~~~~---~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~ 75 (175)
++|.=||+|+ ...+..++...|.+|+..|.+++.++... .+. ........ ....+. ...++. .
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~--~~~~~~-~ 386 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALIS--GTTDYR-G 386 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEE--EeCChH-H
Confidence 5688899987 33444455344899999999998763221 111 11111110 001111 111221 1
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-------------CCCCCCCCc---eEeee
Q 030565 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-------------GTEGLPWPA---FLMSW 139 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-------------~~~~~~~~~---~~~~~ 139 (175)
-..-|+|+=+ +. ++.+--+.+++++-+.++|+..+.-.+....-.. .+++.+... .-...
T Consensus 387 ~~~aDlViEa-v~---E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~ 462 (708)
T PRK11154 387 FKHADVVIEA-VF---EDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIP 462 (708)
T ss_pred hccCCEEeec-cc---ccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEEC
Confidence 2356888765 22 5555667999999999999976655533332111 111111110 11111
Q ss_pred eccCCCcchhHHHHHHHHcCCeeEEecceEEEEe
Q 030565 140 RRRIGKEDETIFFTSCENAGLEVKHLGSRVYCIK 173 (175)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~ 173 (175)
..............++++.|.....+.+...+|.
T Consensus 463 g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pGfi~ 496 (708)
T PRK11154 463 HAKTSAETIATTVALAKKQGKTPIVVRDGAGFYV 496 (708)
T ss_pred CCCCCHHHHHHHHHHHHHcCCceEEEeccCcHHH
Confidence 1222223345666778888887777766554443
No 389
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=87.24 E-value=2.9 Score=32.06 Aligned_cols=96 Identities=15% Similarity=0.155 Sum_probs=55.6
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEEEe
Q 030565 8 ERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i~~ 84 (175)
++.+||=.|+|. |..+..+|+..|. +|++++.++... +.++.. +....+......+.+.. ....+.+|+++.
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~-~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~vid 249 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKL-EAAKAA----GADVVVNGSDPDAAKRIIKAAGGGVDAVID 249 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHh----CCcEEecCCCccHHHHHHHHhCCCCcEEEE
Confidence 578888888874 7777888888887 699999887664 343221 11000000000000000 111225888885
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
... .. ..+.+..+.|+++|+++..
T Consensus 250 ~~g------~~---~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 250 FVN------NS---ATASLAFDILAKGGKLVLV 273 (350)
T ss_pred CCC------CH---HHHHHHHHHhhcCCeEEEE
Confidence 321 11 5678889999999988764
No 390
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=87.14 E-value=2.6 Score=32.68 Aligned_cols=97 Identities=20% Similarity=0.227 Sum_probs=55.2
Q ss_pred cCCCcEEEeCCC-ccHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-C-CCCCCccEE
Q 030565 7 IERRRCIELGSG-TGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-P-IPNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG-~G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~fD~i 82 (175)
.++.+||=.|+| .|..+..+++..+.+ |++++.++... +.++. . +....+......+.+.+ . .....+|+|
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~-~~~~~-~---g~~~v~~~~~~~~~~~l~~~~~~~~~d~v 260 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKL-AKAKE-L---GATHTVNAAKEDAVAAIREITGGRGVDVV 260 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHH-h---CCceEecCCcccHHHHHHHHhCCCCCCEE
Confidence 456777767775 477777788887888 99998887664 44332 1 11000010000110000 0 123468998
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+.. + .. . ..+++..++++++|+++..
T Consensus 261 ld~--v---g~-~---~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 261 VEA--L---GK-P---ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred EEe--C---CC-H---HHHHHHHHHHhcCCEEEEE
Confidence 853 2 11 1 2567788999999988765
No 391
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=86.99 E-value=3.6 Score=29.29 Aligned_cols=97 Identities=19% Similarity=0.239 Sum_probs=56.4
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC---C--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---------
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM---N--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--------- 73 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~---~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 73 (175)
++..|+|+|+-.|..++.+|... | .+|.++|++-..+...+.+ .+.+.+.-++...
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----------~p~i~f~egss~dpai~eqi~~ 138 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----------VPDILFIEGSSTDPAIAEQIRR 138 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----------CCCeEEEeCCCCCHHHHHHHHH
Confidence 56789999998888777666532 5 6799999977553222111 1233333332221
Q ss_pred CCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 74 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...+.--+.++-++- ++.+...+.|+-+.++|.-|..+++.
T Consensus 139 ~~~~y~kIfvilDsd---Hs~~hvLAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 139 LKNEYPKIFVILDSD---HSMEHVLAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred HhcCCCcEEEEecCC---chHHHHHHHHHHhhhHhhcCceEEEe
Confidence 112222444445554 22334457777778888888877765
No 392
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=86.94 E-value=6.9 Score=29.09 Aligned_cols=151 Identities=11% Similarity=0.009 Sum_probs=79.1
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCC--CCCcceeeccCC----CCC---CCCCCCcc
Q 030565 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI--TPALPHIKHSWG----DAF---PIPNPDWD 80 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~---~~~~~~fD 80 (175)
..|+.||||-=.-...+... ..+.-+|++...+.+.-++.+...+. ..+...+..+.. +.+ .+..+..-
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~--~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~pt 160 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWP--DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPT 160 (260)
T ss_pred cEEEEeCCccccHHHhcCCC--CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCe
Confidence 46999999976666555322 23444555443332333333333221 123333433332 111 12233455
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC------CCCCCCCCceEeeeeccCCCcchhHHHHH
Q 030565 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE------GTEGLPWPAFLMSWRRRIGKEDETIFFTS 154 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (175)
++++-.+++|.. .+....+++.+.+...||+.+++-........ ..+...... .....+....+..+..+.
T Consensus 161 l~i~EGvl~YL~-~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 237 (260)
T TIGR00027 161 AWLWEGLLMYLT-EEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARG--VDGSGLVFGIDRADVAEW 237 (260)
T ss_pred eeeecchhhcCC-HHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhc--ccccccccCCChhhHHHH
Confidence 777777776655 66788999999988889998887633321110 000000000 001111112235788899
Q ss_pred HHHcCCeeEEe
Q 030565 155 CENAGLEVKHL 165 (175)
Q Consensus 155 ~~~~g~~~~~~ 165 (175)
+.+.|+++...
T Consensus 238 l~~~Gw~~~~~ 248 (260)
T TIGR00027 238 LAERGWRASEH 248 (260)
T ss_pred HHHCCCeeecC
Confidence 99999998765
No 393
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=86.79 E-value=4.5 Score=30.92 Aligned_cols=96 Identities=18% Similarity=0.151 Sum_probs=52.7
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEe
Q 030565 8 ERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~ 84 (175)
++.+||=.|+|. |..+..+++..+. +|++++-++... ..++.. +....+.....++..... ...+.+|+|+.
T Consensus 163 ~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~-~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~vd~vld 237 (341)
T cd05281 163 SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRL-ELAKKM----GADVVINPREEDVVEVKSVTDGTGVDVVLE 237 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHHh----CcceeeCcccccHHHHHHHcCCCCCCEEEE
Confidence 567777778764 7777888888787 688887666443 222211 110000000000000001 12346898886
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.-. .. ..+.++.++|+++|+++..
T Consensus 238 ~~g------~~---~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 238 MSG------NP---KAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred CCC------CH---HHHHHHHHHhccCCEEEEE
Confidence 421 11 4567788899999987764
No 394
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=86.76 E-value=7.3 Score=29.22 Aligned_cols=94 Identities=19% Similarity=0.167 Sum_probs=49.5
Q ss_pred cEEEeCCCc-cH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCC-Ccc-eeeccCCCCCCCCCCCccEEEeCC
Q 030565 11 RCIELGSGT-GA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-ALP-HIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 11 ~vLDlGcG~-G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
+|+=+|+|. |. ++..+++. +.+|+.+|.+++.+ +.++++ +... .-. .......+.... ...+|+|+..-
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~~~~~-~~~~~~----g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~ 74 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-GHDVTLVARRGAHL-DALNEN----GLRLEDGEITVPVLAADDPAE-LGPQDLVILAV 74 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECChHHH-HHHHHc----CCcccCCceeecccCCCChhH-cCCCCEEEEec
Confidence 467788876 43 33445444 77899999977665 333322 2200 000 000001111111 25789887752
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-- . +...+++.+...+.++..++..
T Consensus 75 k~---~---~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 75 KA---Y---QLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred cc---c---cHHHHHHHHhhhcCCCCEEEEe
Confidence 22 1 3347888888888777655554
No 395
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=86.70 E-value=4.5 Score=31.38 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=56.1
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeec--cCCCC-CCCCCCCcc
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH--SWGDA-FPIPNPDWD 80 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~fD 80 (175)
..++.+||=.|+|. |..+..+++..+.. |++++.++... +.+.+ . +....+..... +.... .....+.+|
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~-~~~~~-~---g~~~~v~~~~~~~~~~~~l~~~~~~~~d 255 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKF-EKAKQ-L---GATECINPRDQDKPIVEVLTEMTDGGVD 255 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHH-h---CCCeecccccccchHHHHHHHHhCCCCc
Confidence 44577888788864 77777788887875 88999877664 44332 1 11111111000 00000 011124589
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcC-CCCceeec
Q 030565 81 LILASDILLYVKQYSNLIKSLSVLLKSYK-PKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~-pgG~~~~~ 117 (175)
+|+-... .. ..+....+.++ ++|+++..
T Consensus 256 ~vid~~g------~~---~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 256 YAFEVIG------SA---DTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred EEEECCC------CH---HHHHHHHHHhccCCCEEEEE
Confidence 8886321 11 56777888899 99988865
No 396
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=86.26 E-value=3.7 Score=31.09 Aligned_cols=95 Identities=11% Similarity=0.098 Sum_probs=51.2
Q ss_pred CCCcEEEe--CCC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-C-CCCCCccEE
Q 030565 8 ERRRCIEL--GSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-P-IPNPDWDLI 82 (175)
Q Consensus 8 ~~~~vLDl--GcG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~fD~i 82 (175)
++.+++=+ |+| .|..+..+++..+.+|++++.++... +.++. .+....+.....++.+.. . .....+|++
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~-~~~~~----~g~~~~i~~~~~~~~~~v~~~~~~~~~d~v 216 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQV-DLLKK----IGAEYVLNSSDPDFLEDLKELIAKLNATIF 216 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHH----cCCcEEEECCCccHHHHHHHHhCCCCCcEE
Confidence 34444433 555 48888888888899999999988664 44432 122000000000110000 1 112358988
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-. . .. .......+.++++|+++..
T Consensus 217 id~--~---g~-----~~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 217 FDA--V---GG-----GLTGQILLAMPYGSTLYVY 241 (324)
T ss_pred EEC--C---Cc-----HHHHHHHHhhCCCCEEEEE
Confidence 853 2 11 2334567788999988775
No 397
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=85.93 E-value=4.2 Score=31.04 Aligned_cols=97 Identities=21% Similarity=0.187 Sum_probs=54.1
Q ss_pred cCCCcEEEeCCC-ccHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-C-CCCCCccEE
Q 030565 7 IERRRCIELGSG-TGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-P-IPNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG-~G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~fD~i 82 (175)
.++.+||=.|+| .|..+..+++..+.+ |++++-++... +.++.. +....+.....++.+.+ . ...+.+|++
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~-~~~~~~----g~~~~v~~~~~~~~~~l~~~~~~~~~d~v 234 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRL-ELAKKM----GATYVVNPFKEDVVKEVADLTDGEGVDVF 234 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHHh----CCcEEEcccccCHHHHHHHhcCCCCCCEE
Confidence 356777777776 377777788887886 88997776553 222211 11000000000110000 1 123468998
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-... . . ..+.++.+.++++|+++..
T Consensus 235 ld~~g----~--~---~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 235 LEMSG----A--P---KALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred EECCC----C--H---HHHHHHHHhhcCCCEEEEE
Confidence 87411 1 1 5677888999999988765
No 398
>PRK10083 putative oxidoreductase; Provisional
Probab=85.91 E-value=4.8 Score=30.63 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=52.9
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHh-CCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKA-MNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~-~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
..++.+||=.|+|. |..+..+++. .|.. ++++|.+++.. +.++.. +....+......+..........+|++
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~-~~~~~~----Ga~~~i~~~~~~~~~~~~~~g~~~d~v 232 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERL-ALAKES----GADWVINNAQEPLGEALEEKGIKPTLI 232 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHh----CCcEEecCccccHHHHHhcCCCCCCEE
Confidence 44677888889764 7777777774 3665 88899888664 333321 110000000000000111111134566
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-... .. ..+.+..+.++++|+++..
T Consensus 233 id~~g------~~---~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 233 IDAAC------HP---SILEEAVTLASPAARIVLM 258 (339)
T ss_pred EECCC------CH---HHHHHHHHHhhcCCEEEEE
Confidence 54311 11 4678888999999998875
No 399
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=85.59 E-value=0.66 Score=34.97 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=39.5
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHH
Q 030565 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSC 155 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (175)
.+.||+|+.+..+.+...+ ++.++++|++.+++- ...++...+..-...-.+...+++
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p--------~l~~~~a~~A~LvvE--------------taKfmvdLrKEq~~~F~~kv~eLA 277 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKP--------ELFQALAPDAVLVVE--------------TAKFMVDLRKEQLQEFVKKVKELA 277 (289)
T ss_pred cCCCCEEEEhhhhHhhcch--------HHHHHhCCCCEEEEE--------------cchhheeCCHHHHHHHHHHHHHHH
Confidence 4579998887665333321 277788999988884 222233222111111136777889
Q ss_pred HHcCCeeE
Q 030565 156 ENAGLEVK 163 (175)
Q Consensus 156 ~~~g~~~~ 163 (175)
+++||+..
T Consensus 278 ~~aG~~p~ 285 (289)
T PF14740_consen 278 KAAGFKPV 285 (289)
T ss_pred HHCCCccc
Confidence 99999754
No 400
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=85.25 E-value=5.1 Score=30.52 Aligned_cols=98 Identities=13% Similarity=0.090 Sum_probs=50.2
Q ss_pred CCcEEEeCCCc--cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHH-hhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 9 RRRCIELGSGT--GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNS-TTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 9 ~~~vLDlGcG~--G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..+|+=+|+|. |.++..|++. +.+|+.+..++. +...++. ....................+ ..+.+|+|+..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vila 79 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSDY---EAVRENGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLVG 79 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCCH---HHHHhCCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEEE
Confidence 35788899986 4455666554 788998888762 2222211 110000000000000111111 23478988764
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-=- . +...+++.+...+++++.++..
T Consensus 80 vK~---~---~~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 80 LKT---T---ANALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred ecC---C---ChHhHHHHHhhhcCCCCEEEEe
Confidence 221 1 2236777777888888866555
No 401
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.04 E-value=7.7 Score=31.64 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=30.0
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHH
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
...+++|+=+|.|. |..+..+++..|.+|+++|.++..+
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~ 48 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDAL 48 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 44678999999984 7666666666689999999776543
No 402
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=85.01 E-value=0.95 Score=30.27 Aligned_cols=98 Identities=16% Similarity=0.143 Sum_probs=50.5
Q ss_pred EEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHH-HhhCCCCCCcceeeccCCCCC---CCCCCCccEEEeCCc
Q 030565 13 IELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYN-STTNGITPALPHIKHSWGDAF---PIPNPDWDLILASDI 87 (175)
Q Consensus 13 LDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~i~~~~~ 87 (175)
+=+|+|. |.+-....+..+.+|+.++-++ .+ +..+.+ ...... . ........... ......+|+|+..-=
T Consensus 2 ~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~-~~~~~~g~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RL-EAIKEQGLTITGP--D-GDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEESTSHHHHHHHHHHHHTTCEEEEEESHH-HH-HHHHHHCEEEEET--T-EEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred EEECcCHHHHHHHHHHHHCCCceEEEEccc-cH-HhhhheeEEEEec--c-cceecccccccCcchhccCCCcEEEEEec
Confidence 3467764 4444333233488999999987 44 333322 111111 0 00001110111 123458999887521
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030565 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
- . +...+++.+.+.+.|+..+++.....
T Consensus 77 a---~---~~~~~l~~l~~~~~~~t~iv~~qNG~ 104 (151)
T PF02558_consen 77 A---Y---QLEQALQSLKPYLDPNTTIVSLQNGM 104 (151)
T ss_dssp G---G---GHHHHHHHHCTGEETTEEEEEESSSS
T ss_pred c---c---chHHHHHHHhhccCCCcEEEEEeCCC
Confidence 1 2 33488899999999997666664443
No 403
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=84.87 E-value=1.3 Score=31.35 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=29.8
Q ss_pred cCCCcEEEeCCC-ccHHHHHHHHhCCCcEEEEeCChHH
Q 030565 7 IERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQE 43 (175)
Q Consensus 7 ~~~~~vLDlGcG-~G~~~~~l~~~~~~~v~~~D~s~~~ 43 (175)
..++++|=+|.- +|.....+.+. .++|+.+|+.|.|
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~ 79 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFM 79 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHH
Confidence 357889999996 78888777665 8899999999976
No 404
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.74 E-value=15 Score=29.71 Aligned_cols=75 Identities=21% Similarity=0.120 Sum_probs=41.9
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...+++|+=+|+|. |.-+..++...|.+|+++|.++........+.....+. .+..+.... ....+|+|+.
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv-------~~~~~~~~~-~~~~~D~Vv~ 84 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGA-------TVRLGPGPT-LPEDTDLVVT 84 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCC-------EEEECCCcc-ccCCCCEEEE
Confidence 34578899999984 66554444555889999997764321333333444333 111111111 1235798887
Q ss_pred CCcc
Q 030565 85 SDIL 88 (175)
Q Consensus 85 ~~~l 88 (175)
+..+
T Consensus 85 s~Gi 88 (480)
T PRK01438 85 SPGW 88 (480)
T ss_pred CCCc
Confidence 6554
No 405
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=84.62 E-value=13 Score=28.34 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=27.5
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHh-CCCcEEEEeCChHHH
Q 030565 7 IERRRCIELGSGT-GALAIFLRKA-MNLDITTSDYNDQEI 44 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~l 44 (175)
.++++|+=+|+|. |......... .+.+|+.+|.++...
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra 215 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERA 215 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHH
Confidence 4789999999985 7665444343 346799999988654
No 406
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=84.61 E-value=1.2 Score=29.23 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=38.7
Q ss_pred CCCccEEEeCCcccCcccchHH--HHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHH
Q 030565 76 NPDWDLILASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFT 153 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~--~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (175)
...||+|+.-.. .....+++ ..+++++.++++|||++.. |. ....+.+
T Consensus 48 ~~~~Da~ylDgF--sP~~nPelWs~e~~~~l~~~~~~~~~l~T--ys--------------------------~a~~Vr~ 97 (124)
T PF05430_consen 48 DARFDAWYLDGF--SPAKNPELWSEELFKKLARLSKPGGTLAT--YS--------------------------SAGAVRR 97 (124)
T ss_dssp -T-EEEEEE-SS---TTTSGGGSSHHHHHHHHHHEEEEEEEEE--S----------------------------BHHHHH
T ss_pred cccCCEEEecCC--CCcCCcccCCHHHHHHHHHHhCCCcEEEE--ee--------------------------chHHHHH
Confidence 367888887421 11111111 4899999999999985444 11 1366888
Q ss_pred HHHHcCCeeEEec
Q 030565 154 SCENAGLEVKHLG 166 (175)
Q Consensus 154 ~~~~~g~~~~~~~ 166 (175)
.+.++||+|+...
T Consensus 98 ~L~~aGF~v~~~~ 110 (124)
T PF05430_consen 98 ALQQAGFEVEKVP 110 (124)
T ss_dssp HHHHCTEEEEEEE
T ss_pred HHHHcCCEEEEcC
Confidence 9999999998773
No 407
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=84.43 E-value=11 Score=32.44 Aligned_cols=158 Identities=13% Similarity=0.111 Sum_probs=80.8
Q ss_pred CcEEEeCCCc-cHH-HHHHHHhCCCcEEEEeCChHHHHHHHHH---H----HhhCCCCCC-----cceeeccCCCCCCCC
Q 030565 10 RRCIELGSGT-GAL-AIFLRKAMNLDITTSDYNDQEIEDNIAY---N----STTNGITPA-----LPHIKHSWGDAFPIP 75 (175)
Q Consensus 10 ~~vLDlGcG~-G~~-~~~l~~~~~~~v~~~D~s~~~l~~~~~~---~----~~~~~~~~~-----~~~~~~~~~~~~~~~ 75 (175)
++|.=||+|+ |.- +..++...|.+|+..|.+++.++....+ . ......... ...+. ...++. .
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~--~~~~~~-~ 381 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALIT--GTTDYR-G 381 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeE--EeCChH-H
Confidence 4688889987 332 2334433489999999999876422211 1 111111100 01111 111221 1
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-------------CCCCCCCCc-eEee--e
Q 030565 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-------------GTEGLPWPA-FLMS--W 139 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-------------~~~~~~~~~-~~~~--~ 139 (175)
-..-|+|+=+ +. ++.+--.++++++-+.++|+..+...+....-.. .+++.+... -+.. .
T Consensus 382 ~~~adlViEa-v~---E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~ 457 (699)
T TIGR02440 382 FKDVDIVIEA-VF---EDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIP 457 (699)
T ss_pred hccCCEEEEe-cc---ccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeC
Confidence 2356888765 22 5555567999999999999975555433332111 111111111 0111 1
Q ss_pred eccCCCcchhHHHHHHHHcCCeeEEecceEEEEec
Q 030565 140 RRRIGKEDETIFFTSCENAGLEVKHLGSRVYCIKL 174 (175)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~ 174 (175)
......+..+...++++..|.+...+.+..-+|.+
T Consensus 458 g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pGfi~n 492 (699)
T TIGR02440 458 HAGTSEQTIATTVALAKKQGKTPIVVADKAGFYVN 492 (699)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEccccchHHH
Confidence 11222223456667788889887777666555443
No 408
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=84.39 E-value=2.1 Score=33.74 Aligned_cols=39 Identities=18% Similarity=0.032 Sum_probs=27.4
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHH
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
.+.++++||=|.+|- ..++.+......+|+++|+||.++
T Consensus 32 ~i~~~d~vl~ItSaG-~N~L~yL~~~P~~I~aVDlNp~Q~ 70 (380)
T PF11899_consen 32 NIGPDDRVLTITSAG-CNALDYLLAGPKRIHAVDLNPAQN 70 (380)
T ss_pred CCCCCCeEEEEccCC-chHHHHHhcCCceEEEEeCCHHHH
Confidence 456788999997653 334443344367899999999774
No 409
>PRK06701 short chain dehydrogenase; Provisional
Probab=84.15 E-value=12 Score=28.00 Aligned_cols=35 Identities=9% Similarity=0.155 Sum_probs=22.3
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC---CCcEEEEeCCh
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYND 41 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~ 41 (175)
.++++++|=.|++. .++..+++.+ +.+|+.++.++
T Consensus 43 ~~~~k~iLItGasg-gIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 43 KLKGKVALITGGDS-GIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred CCCCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34567888888644 3344433322 78899998875
No 410
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=83.97 E-value=8.1 Score=29.06 Aligned_cols=94 Identities=14% Similarity=0.035 Sum_probs=47.5
Q ss_pred cEEEeCCCc-cH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCc--ceeeccC--CCCCCCCCCCccEEEe
Q 030565 11 RCIELGSGT-GA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPAL--PHIKHSW--GDAFPIPNPDWDLILA 84 (175)
Q Consensus 11 ~vLDlGcG~-G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~fD~i~~ 84 (175)
+|+=+|+|. |. ++..+++. +.+|+.++. ++.+ +.++. .+..... ....... .++.......+|+|+.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-g~~V~~~~r-~~~~-~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-GRDVTFLVR-PKRA-KALRE----RGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-CCceEEEec-HHHH-HHHHh----CCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence 466788886 44 34455554 788999998 5554 33332 1220000 0000000 1111111256898776
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.--- . ....+++++...+.++..++..
T Consensus 75 avk~---~---~~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 75 AVKA---Y---QLDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred Eecc---c---CHHHHHHHHHhhcCCCCEEEEe
Confidence 4221 1 3347778888878777654444
No 411
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.88 E-value=16 Score=27.34 Aligned_cols=153 Identities=14% Similarity=0.113 Sum_probs=73.5
Q ss_pred cEEEeCCCc--cHHHHHHHHhCCCcEEEEeCChHHHHHHHH------HHHhhCC-CCCC-ccee--eccCCCCCCCCCCC
Q 030565 11 RCIELGSGT--GALAIFLRKAMNLDITTSDYNDQEIEDNIA------YNSTTNG-ITPA-LPHI--KHSWGDAFPIPNPD 78 (175)
Q Consensus 11 ~vLDlGcG~--G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~------~~~~~~~-~~~~-~~~~--~~~~~~~~~~~~~~ 78 (175)
+|.=||+|. +.++..+++. +.+|+++|.+++.++.... ......+ .... .... .+....+.. .-..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 466678885 4444555554 7899999999987632111 1111112 1000 0000 001111111 1235
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCC------------CCCCCCC-CC---ceEeeeecc
Q 030565 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQG------------EGTEGLP-WP---AFLMSWRRR 142 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~------------~~~~~~~-~~---~~~~~~~~~ 142 (175)
.|+|+.+-. ++.+....+++++.+.++|+..+...+....-. ...++.. .+ ..-......
T Consensus 83 aDlVi~av~----e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~ 158 (282)
T PRK05808 83 ADLVIEAAT----ENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLA 158 (282)
T ss_pred CCeeeeccc----ccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCC
Confidence 688877522 323333489999999999987553332222110 1111111 10 111111122
Q ss_pred CCCcchhHHHHHHHHcCCeeEEecceE
Q 030565 143 IGKEDETIFFTSCENAGLEVKHLGSRV 169 (175)
Q Consensus 143 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ 169 (175)
...+..+....+++..|..+..+.+..
T Consensus 159 t~~e~~~~~~~l~~~lGk~pv~~~d~~ 185 (282)
T PRK05808 159 TSDATHEAVEALAKKIGKTPVEVKNAP 185 (282)
T ss_pred CCHHHHHHHHHHHHHcCCeeEEecCcc
Confidence 223344667777888898877765543
No 412
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=83.87 E-value=7.6 Score=31.36 Aligned_cols=73 Identities=19% Similarity=0.187 Sum_probs=46.0
Q ss_pred CCCcEEEeCCC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030565 8 ERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.+++|+=+|-| +|.-+..+..+.|..|++.|.++... ......... ..+....+....+....+|+|+.+.
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~-~~~~~~~~~-------~~i~~~~g~~~~~~~~~~d~vV~SP 77 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPE-GLAAQPLLL-------EGIEVELGSHDDEDLAEFDLVVKSP 77 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCcc-chhhhhhhc-------cCceeecCccchhccccCCEEEECC
Confidence 38899999998 57777666666699999999988662 121111111 1222333322224456789999987
Q ss_pred cc
Q 030565 87 IL 88 (175)
Q Consensus 87 ~l 88 (175)
.+
T Consensus 78 Gi 79 (448)
T COG0771 78 GI 79 (448)
T ss_pred CC
Confidence 77
No 413
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.73 E-value=4.9 Score=30.27 Aligned_cols=102 Identities=13% Similarity=0.179 Sum_probs=53.2
Q ss_pred CcEEEeCCCc-c-HHHHHHHHhCCCcEEEEeCChHHHHHHHH---H----HHhhCCCCCCcc-ee--eccCCCCCCCCCC
Q 030565 10 RRCIELGSGT-G-ALAIFLRKAMNLDITTSDYNDQEIEDNIA---Y----NSTTNGITPALP-HI--KHSWGDAFPIPNP 77 (175)
Q Consensus 10 ~~vLDlGcG~-G-~~~~~l~~~~~~~v~~~D~s~~~l~~~~~---~----~~~~~~~~~~~~-~~--~~~~~~~~~~~~~ 77 (175)
++|-=||+|+ | ..+..++.. |.+|+..|.+++.++...+ + ............ .. .+....+.. .-.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~ 83 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLG-DFA 83 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHH-HhC
Confidence 3677789986 3 333445554 8999999999988642211 1 111111100000 00 000111221 123
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhc-CCCCceeec
Q 030565 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSY-KPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l-~pgG~~~~~ 117 (175)
.-|+|+-+ +. ++.+--..++.++-+.+ +|+..+...
T Consensus 84 ~~d~ViEa-v~---E~~~~K~~l~~~l~~~~~~~~~il~sn 120 (286)
T PRK07819 84 DRQLVIEA-VV---EDEAVKTEIFAELDKVVTDPDAVLASN 120 (286)
T ss_pred CCCEEEEe-cc---cCHHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 56888875 22 44444557888888888 777655444
No 414
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.58 E-value=15 Score=26.87 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=27.8
Q ss_pred CccccCCCcEEEeCCCcc-HHHHHHHHhC---CCcEEEEeCChHH
Q 030565 3 HREWIERRRCIELGSGTG-ALAIFLRKAM---NLDITTSDYNDQE 43 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG~G-~~~~~l~~~~---~~~v~~~D~s~~~ 43 (175)
....++++++|=.|+++| .++..+++.+ |.+|+.+|.++..
T Consensus 4 ~~~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~ 48 (258)
T PRK07533 4 PLLPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKA 48 (258)
T ss_pred cccccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhh
Confidence 344467899999998762 5555444433 7889999887643
No 415
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=83.17 E-value=7.2 Score=30.16 Aligned_cols=97 Identities=13% Similarity=0.060 Sum_probs=56.1
Q ss_pred cCCCcEEEeCCC-ccHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CC-CCCCccEE
Q 030565 7 IERRRCIELGSG-TGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PI-PNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG-~G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~fD~i 82 (175)
.++.+||=.|+| .|..+..+++..+.. |++++.++... +.++. . +....+.....++...+ .. ....+|++
T Consensus 181 ~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~-~~~~~-~---g~~~vv~~~~~~~~~~l~~~~~~~~vd~v 255 (363)
T cd08279 181 RPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKL-ELARR-F---GATHTVNASEDDAVEAVRDLTDGRGADYA 255 (363)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHH-HHHHH-h---CCeEEeCCCCccHHHHHHHHcCCCCCCEE
Confidence 457788888886 477778888888886 99998887664 33321 1 11000000000000000 11 13468988
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+.... .. ..+.+..+.++++|+++..
T Consensus 256 ld~~~------~~---~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 256 FEAVG------RA---ATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred EEcCC------Ch---HHHHHHHHHhhcCCeEEEE
Confidence 75321 11 5567888999999988765
No 416
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.00 E-value=9.8 Score=28.60 Aligned_cols=98 Identities=21% Similarity=0.271 Sum_probs=51.0
Q ss_pred CcEEEeCCCc-c-HHHHHHHHhCCCcEEEEeCChHHHHHHHH---HHHhh---CCCCCC------cceeeccCCCCCCCC
Q 030565 10 RRCIELGSGT-G-ALAIFLRKAMNLDITTSDYNDQEIEDNIA---YNSTT---NGITPA------LPHIKHSWGDAFPIP 75 (175)
Q Consensus 10 ~~vLDlGcG~-G-~~~~~l~~~~~~~v~~~D~s~~~l~~~~~---~~~~~---~~~~~~------~~~~~~~~~~~~~~~ 75 (175)
++|.=||+|+ | .++..++.. +.+|+.+|.+++.++...+ ++... .+.... ...+ ...++...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i--~~~~~~~~- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARI--STATDLED- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe--EeeCCHHH-
Confidence 4677788886 3 333445444 7899999999987632221 11110 111000 0001 11122211
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCcee
Q 030565 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQV 115 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~ 115 (175)
-...|+|+.+-. .+.+....+++++...++|+..++
T Consensus 81 ~~~aD~Vieavp----e~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 81 LADCDLVIEAAT----EDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred hcCCCEEEEcCc----CCHHHHHHHHHHHHhhCCCCcEEE
Confidence 235688877521 222334477888888899987554
No 417
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.87 E-value=5 Score=30.12 Aligned_cols=97 Identities=19% Similarity=0.139 Sum_probs=49.6
Q ss_pred CcEEEeCCCc-c-HHHHHHHHhCCCcEEEEeCChHHHHHHHHHHH----h----hCCCCCC------cceeeccCCCCCC
Q 030565 10 RRCIELGSGT-G-ALAIFLRKAMNLDITTSDYNDQEIEDNIAYNS----T----TNGITPA------LPHIKHSWGDAFP 73 (175)
Q Consensus 10 ~~vLDlGcG~-G-~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~----~----~~~~~~~------~~~~~~~~~~~~~ 73 (175)
++|.=||+|+ | .++..+++. +.+|+.+|.+++.+++ ++... . ....... ...+ ....+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~d~~ 79 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISDEALEK-AKERIAKLADRYVRDLEATKEAPAEAALNRI--TLTTDLA 79 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCHHHHHH-HHHHHHHHHHHHHHcCCCChhhhHHHHHcCe--EEeCCHH
Confidence 3567778886 3 233344444 7889999999987633 22221 1 0011000 0011 0112221
Q ss_pred CCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCce
Q 030565 74 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQ 114 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~ 114 (175)
..-..-|+|+.+-. ...+....+++++...++++..+
T Consensus 80 ~a~~~aDlVieavp----e~~~~k~~~~~~l~~~~~~~~ii 116 (287)
T PRK08293 80 EAVKDADLVIEAVP----EDPEIKGDFYEELAKVAPEKTIF 116 (287)
T ss_pred HHhcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCCEE
Confidence 11234588877522 22334557888888888877644
No 418
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=82.87 E-value=7.5 Score=27.64 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=25.6
Q ss_pred ccCCCcEEEeCCCc-cHHH-HHHHHhCCCcEEEEeCCh
Q 030565 6 WIERRRCIELGSGT-GALA-IFLRKAMNLDITTSDYND 41 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~-~~l~~~~~~~v~~~D~s~ 41 (175)
.+.+++||=+|||. |... ..++..+-.+++.+|.+.
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 34678999999984 6655 446555445799999873
No 419
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=82.76 E-value=1.1 Score=36.11 Aligned_cols=88 Identities=14% Similarity=0.216 Sum_probs=51.1
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhC-----CCcEE------EEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC
Q 030565 5 EWIERRRCIELGSGT-GALAIFLRKAM-----NLDIT------TSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 72 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~-----~~~v~------~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (175)
..+++++|+=||||+ |. ++.. |.+|+ ++|.+...- +.+. ..+.. . ...
T Consensus 32 ~~LkgKtIaIIGyGSqG~-----AqAlNLrdSGvnVvvglr~~~id~~~~s~-~kA~----~dGF~---------v-~~~ 91 (487)
T PRK05225 32 SYLKGKKIVIVGCGAQGL-----NQGLNMRDSGLDISYALRKEAIAEKRASW-RKAT----ENGFK---------V-GTY 91 (487)
T ss_pred HHhCCCEEEEEccCHHHH-----HHhCCCccccceeEEeccccccccccchH-HHHH----hcCCc---------c-CCH
Confidence 457899999999997 66 2333 44444 344434332 2211 11220 0 011
Q ss_pred CCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030565 73 PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 73 ~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
...-..-|+|++.- ++. ....+.+++...||||..|.+++
T Consensus 92 ~Ea~~~ADvVviLl-----PDt-~q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 92 EELIPQADLVINLT-----PDK-QHSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred HHHHHhCCEEEEcC-----ChH-HHHHHHHHHHhhCCCCCEEEecC
Confidence 11123568888753 323 25567799999999999999983
No 420
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=82.58 E-value=10 Score=28.70 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=47.0
Q ss_pred CcEEEeCCCc-c-HHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 10 RRCIELGSGT-G-ALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 10 ~~vLDlGcG~-G-~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.+|.=||+|. | .++..+++. + .+|+++|.+++.+ +.++. .+.. ... .......-...|+|+.+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-g~~~~V~~~dr~~~~~-~~a~~----~g~~---~~~----~~~~~~~~~~aDvViia 73 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-GLAGEIVGADRSAETR-ARARE----LGLG---DRV----TTSAAEAVKGADLVILC 73 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-CCCcEEEEEECCHHHH-HHHHh----CCCC---cee----cCCHHHHhcCCCEEEEC
Confidence 5688888886 3 334445443 4 3799999998765 33321 1210 000 01111112356888775
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
-.. .....+++++...++++..++.
T Consensus 74 vp~------~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 74 VPV------GASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred CCH------HHHHHHHHHHHhhCCCCCEEEe
Confidence 432 1233667777777888764443
No 421
>PLN02702 L-idonate 5-dehydrogenase
Probab=82.40 E-value=5.4 Score=30.86 Aligned_cols=98 Identities=12% Similarity=0.142 Sum_probs=55.2
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcc--eeeccCCCC---C-CCCCC
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALP--HIKHSWGDA---F-PIPNP 77 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~-~~~~~ 77 (175)
..++.+||=+|+|. |..+..+++..+.+ |+++|.++... +.++.. +...... ....++... + ....+
T Consensus 179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~-~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (364)
T PLN02702 179 IGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERL-SVAKQL----GADEIVLVSTNIEDVESEVEEIQKAMGG 253 (364)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHh----CCCEEEecCcccccHHHHHHHHhhhcCC
Confidence 34677888888763 77778888877765 88999887654 333221 1100000 000001000 0 01123
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+|+|+-.-. .. ..+.+..+.++++|+++..
T Consensus 254 ~~d~vid~~g------~~---~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 254 GIDVSFDCVG------FN---KTMSTALEATRAGGKVCLV 284 (364)
T ss_pred CCCEEEECCC------CH---HHHHHHHHHHhcCCEEEEE
Confidence 6888876411 11 4678888999999987755
No 422
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=82.12 E-value=4 Score=33.03 Aligned_cols=108 Identities=13% Similarity=0.085 Sum_probs=61.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC-----CCC--CCCCCc
Q 030565 8 ERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-----AFP--IPNPDW 79 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~f 79 (175)
.+.++|=+|=|.|.+...+...+. .++++++++|.|+ +.++.+.....- .-..++...|- ... ..+..|
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l-~va~q~f~f~q~--~r~~V~i~dGl~~~~~~~k~~~~~~~~ 371 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEML-EVATQYFGFMQS--DRNKVHIADGLDFLQRTAKSQQEDICP 371 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHh-hccHhhhchhhh--hhhhhhHhhchHHHHHHhhccccccCC
Confidence 467788888888988877755444 7899999999998 333322211000 00112222221 111 134478
Q ss_pred cEEEe----CC--cccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030565 80 DLILA----SD--ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 80 D~i~~----~~--~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
|+++. .+ -+...+..---..++......+.|.|.+.+..
T Consensus 372 dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 372 DVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred cEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence 98875 22 11111110012467788888999999887763
No 423
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=82.12 E-value=2.8 Score=32.02 Aligned_cols=105 Identities=12% Similarity=0.177 Sum_probs=63.7
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCC--CCC----------
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG--DAF---------- 72 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------- 72 (175)
..++.++|=+|.|. |......+..+|.-|++.|..+..= +..+ ....+... .....-.-+ ..+
T Consensus 161 tv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~K-eqv~-s~Ga~f~~--~~~ee~~gGYAk~ms~~~~~~q~~ 236 (356)
T COG3288 161 TVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKK-EQVE-SLGAKFLA--VEDEESAGGYAKEMSEEFIAKQAE 236 (356)
T ss_pred cccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHh-hhhh-hccccccc--ccccccCCCccccCCHHHHHHHHH
Confidence 34567788888886 6666777788788899999866431 1111 11111110 000000000 011
Q ss_pred --CCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 73 --PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 73 --~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...-..+|+||....+ +..+.+.-+-+++...+|||..++=.
T Consensus 237 ~~a~~~~~~DivITTAlI---PGrpAP~Lvt~~mv~sMkpGSViVDl 280 (356)
T COG3288 237 LVAEQAKEVDIVITTALI---PGRPAPKLVTAEMVASMKPGSVIVDL 280 (356)
T ss_pred HHHHHhcCCCEEEEeccc---CCCCCchhhHHHHHHhcCCCcEEEEe
Confidence 1123479999999888 77777788999999999999855443
No 424
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=82.04 E-value=5.7 Score=29.93 Aligned_cols=84 Identities=20% Similarity=0.151 Sum_probs=46.0
Q ss_pred CcEEEeCCCc--cHHHHHHHHhCCCc--EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEEEe
Q 030565 10 RRCIELGSGT--GALAIFLRKAMNLD--ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILA 84 (175)
Q Consensus 10 ~~vLDlGcG~--G~~~~~l~~~~~~~--v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i~~ 84 (175)
.+|+=+|.|- |.++..+... |.. +++.|.+...+... ...... ....... .......|+|+.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~-g~~v~i~g~d~~~~~~~~a----~~lgv~--------d~~~~~~~~~~~~~aD~Viv 70 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA-GLVVRIIGRDRSAATLKAA----LELGVI--------DELTVAGLAEAAAEADLVIV 70 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc-CCeEEEEeecCcHHHHHHH----hhcCcc--------cccccchhhhhcccCCEEEE
Confidence 4677788874 5555666444 555 46666666544221 111111 0000111 223345799887
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCC
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKD 112 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG 112 (175)
+-.+ ....++++++...+++|.
T Consensus 71 avPi------~~~~~~l~~l~~~l~~g~ 92 (279)
T COG0287 71 AVPI------EATEEVLKELAPHLKKGA 92 (279)
T ss_pred eccH------HHHHHHHHHhcccCCCCC
Confidence 6444 334488888888888885
No 425
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=81.93 E-value=4.3 Score=31.76 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=55.9
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeec---cCCCC-CC-CCCCC
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH---SWGDA-FP-IPNPD 78 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~-~~~~~ 78 (175)
..+|.+||=.|+|. |..++.+++..|. +|++++.++... +.++. .+....+..... .+.+. .. .....
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~-~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~~g~g 275 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERR-NLAKE----MGADYVFNPTKMRDCLSGEKVMEVTKGWG 275 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHH----cCCCEEEcccccccccHHHHHHHhcCCCC
Confidence 44577777778864 7777778888788 699999887643 32222 111000010000 01000 01 12235
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+|+.. . .... ..+.+..+.++++|+++..
T Consensus 276 vDvvld~--~---g~~~---~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 276 ADIQVEA--A---GAPP---ATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCEEEEC--C---CCcH---HHHHHHHHHHHcCCEEEEE
Confidence 8988864 2 2112 5677788889999988865
No 426
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=81.92 E-value=12 Score=28.46 Aligned_cols=153 Identities=14% Similarity=0.041 Sum_probs=81.9
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC--CCcceeeccCC-CCC----C---CCCCCc
Q 030565 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT--PALPHIKHSWG-DAF----P---IPNPDW 79 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~----~---~~~~~f 79 (175)
..|+-||||-=.-+..+-...+.+|+=+|..+ .+ +.-++.....+.. .....+..+.. ++. . +..+.-
T Consensus 94 ~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pe-vi-~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~p 171 (297)
T COG3315 94 RQVVILGAGLDTRAYRLDWPKGTRVFEVDLPE-VI-EFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRP 171 (297)
T ss_pred cEEEEeccccccceeecCCCCCCeEEECCCcH-HH-HHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCC
Confidence 66899999864444334222135566666654 32 4444444443321 13344444443 222 1 223445
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCC---CCCCCCc--e-EeeeeccCCCcchhHHHH
Q 030565 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGT---EGLPWPA--F-LMSWRRRIGKEDETIFFT 153 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~---~~~~~~~--~-~~~~~~~~~~~~~~~~~~ 153 (175)
-++++-.++.|.. .+...+++..+...+.||..+++........... ....... + ......++...+..+..+
T Consensus 172 t~~iaEGLl~YL~-~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~ 250 (297)
T COG3315 172 TLWIAEGLLMYLP-EEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIET 250 (297)
T ss_pred eEEEeccccccCC-HHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHHH
Confidence 5788888886766 5678899999999998988777654311111011 1100000 0 001112333445678888
Q ss_pred HHHHcCCeeEEe
Q 030565 154 SCENAGLEVKHL 165 (175)
Q Consensus 154 ~~~~~g~~~~~~ 165 (175)
.+.+.|+.....
T Consensus 251 ~l~~~g~~~~~~ 262 (297)
T COG3315 251 WLAERGWRSTLN 262 (297)
T ss_pred HHHhcCEEEEec
Confidence 899999876554
No 427
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.89 E-value=9.1 Score=29.02 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=24.3
Q ss_pred CcEEEeCCCc-c-HHHHHHHHhCCCcEEEEeCChHHHH
Q 030565 10 RRCIELGSGT-G-ALAIFLRKAMNLDITTSDYNDQEIE 45 (175)
Q Consensus 10 ~~vLDlGcG~-G-~~~~~l~~~~~~~v~~~D~s~~~l~ 45 (175)
++|.=||+|. | .++..+++. +.+|+++|.+++.++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~~~~~~ 41 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-GLQVVLIDVMEGALE 41 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHH
Confidence 4566788886 3 344445444 778999999998763
No 428
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=81.88 E-value=2.3 Score=32.44 Aligned_cols=45 Identities=9% Similarity=0.048 Sum_probs=31.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHH
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYN 51 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~ 51 (175)
..+++..+|.=-|.|..+..+.+.. ...|+|+|.++.++ +.++..
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~-~~a~~~ 63 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEAL-ERAKER 63 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHH-HHHHCC
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHH-HHHHHH
Confidence 3467789999999999998887754 57899999999997 555543
No 429
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.85 E-value=12 Score=30.44 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=28.3
Q ss_pred CccccCCCcEEEeCCC-ccHHHHHHHHhCCCcEEEEeCChH
Q 030565 3 HREWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQ 42 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG-~G~~~~~l~~~~~~~v~~~D~s~~ 42 (175)
......+++|+=+|+| +|.-...+....|..|++.|.+..
T Consensus 9 ~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 49 (473)
T PRK00141 9 ALPQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNET 49 (473)
T ss_pred hcccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChH
Confidence 4455677899999998 466434444555889999997653
No 430
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=81.75 E-value=7.2 Score=29.75 Aligned_cols=96 Identities=16% Similarity=0.159 Sum_probs=54.1
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-C-CCCCCccEEE
Q 030565 8 ERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-P-IPNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~fD~i~ 83 (175)
+|++||=.|+|. |..+..+++..+. +|++++.++... +.++.. +....+......+.+.+ . ...+.+|+|+
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~-~~~~~l----g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~ 237 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRL-ELARKM----GATRAVNVAKEDLRDVMAELGMTEGFDVGL 237 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHh----CCcEEecCccccHHHHHHHhcCCCCCCEEE
Confidence 577777788764 7777788887787 588888777554 332221 11000000000010001 1 1234688887
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-... .. ..++...++++++|+++..
T Consensus 238 d~~g------~~---~~~~~~~~~l~~~G~~v~~ 262 (341)
T PRK05396 238 EMSG------AP---SAFRQMLDNMNHGGRIAML 262 (341)
T ss_pred ECCC------CH---HHHHHHHHHHhcCCEEEEE
Confidence 6311 11 5677788899999988776
No 431
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.74 E-value=8 Score=31.21 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=26.1
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChH
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQ 42 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~ 42 (175)
...+++|+=+|-|. |.....+....|..|+++|.++.
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 34578899999986 44333344445899999998763
No 432
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=81.23 E-value=6.9 Score=30.22 Aligned_cols=90 Identities=17% Similarity=0.056 Sum_probs=49.9
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
.+.|++|.=||+|. |......++..|.+|+++|.++...... .. . ...+...-..-|+|+.
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~---~-----------~~~l~ell~~aDiVil 204 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----LT---Y-----------KDSVKEAIKDADIISL 204 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----hh---c-----------cCCHHHHHhcCCEEEE
Confidence 35678888899986 6544444455689999999987542110 00 0 0111111234588777
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-.. . .+....+-+++...+|||..++-+
T Consensus 205 ~lP~---t-~~t~~li~~~~l~~mk~gavlIN~ 233 (330)
T PRK12480 205 HVPA---N-KESYHLFDKAMFDHVKKGAILVNA 233 (330)
T ss_pred eCCC---c-HHHHHHHhHHHHhcCCCCcEEEEc
Confidence 5443 1 111224456777888887644433
No 433
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=81.14 E-value=12 Score=28.46 Aligned_cols=92 Identities=23% Similarity=0.225 Sum_probs=53.3
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC--CCCCCCCCccEEE
Q 030565 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--AFPIPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fD~i~ 83 (175)
.++.+++=.|||. |..+..+++..+.++++++.+++.. +.++. . +. ..+ ++..+ ......+.+|+++
T Consensus 168 ~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~-~~~~~-~---g~----~~v-i~~~~~~~~~~~~~~~d~v~ 237 (337)
T cd05283 168 GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKK-EDALK-L---GA----DEF-IATKDPEAMKKAAGSLDLII 237 (337)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHH-HHHHH-c---CC----cEE-ecCcchhhhhhccCCceEEE
Confidence 3456666678754 7777778887788999999988664 33321 1 11 010 11000 0011134688888
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
....- . ..+....++++++|+++..
T Consensus 238 ~~~g~------~---~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 238 DTVSA------S---HDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred ECCCC------c---chHHHHHHHhcCCCEEEEE
Confidence 53211 1 2456778889999988765
No 434
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=81.14 E-value=11 Score=28.75 Aligned_cols=96 Identities=16% Similarity=0.090 Sum_probs=51.3
Q ss_pred cEEEeCCCc--cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHH-HhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030565 11 RCIELGSGT--GALAIFLRKAMNLDITTSDYNDQEIEDNIAYN-STTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 11 ~vLDlGcG~--G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
+|+=+|+|. |.++..|++. +..|+.+-.++. + +.++++ ........ ...........+.....+|+|+..-=
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~-g~~V~~~~R~~~-~-~~l~~~GL~i~~~~~--~~~~~~~~~~~~~~~~~~Dlviv~vK 76 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKA-GHDVTLLVRSRR-L-EALKKKGLRIEDEGG--NFTTPVVAATDAEALGPADLVIVTVK 76 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhC-CCeEEEEecHHH-H-HHHHhCCeEEecCCC--ccccccccccChhhcCCCCEEEEEec
Confidence 677899996 4455667665 556777766654 4 333322 11111100 00000000111222347999887422
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
- . +...+++.+...++|...+++.
T Consensus 77 a---~---q~~~al~~l~~~~~~~t~vl~l 100 (307)
T COG1893 77 A---Y---QLEEALPSLAPLLGPNTVVLFL 100 (307)
T ss_pred c---c---cHHHHHHHhhhcCCCCcEEEEE
Confidence 1 2 3348999999999999766665
No 435
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=81.07 E-value=0.68 Score=31.66 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=40.7
Q ss_pred EEEeCCCccHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030565 12 CIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 12 vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
|-=||+| ..+..+++++ +.+|++.|.+++..++..+. +. .. .+.....-...|+|++. +
T Consensus 4 Ig~IGlG--~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~-----g~----~~-----~~s~~e~~~~~dvvi~~--v 65 (163)
T PF03446_consen 4 IGFIGLG--NMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA-----GA----EV-----ADSPAEAAEQADVVILC--V 65 (163)
T ss_dssp EEEE--S--HHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT-----TE----EE-----ESSHHHHHHHBSEEEE---S
T ss_pred EEEEchH--HHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh-----hh----hh-----hhhhhhHhhcccceEee--c
Confidence 3335555 4444444432 88999999998765322221 11 00 01111111234888774 2
Q ss_pred cCcccchHHHHHHHH--HHhhcCCCCcee
Q 030565 89 LYVKQYSNLIKSLSV--LLKSYKPKDSQV 115 (175)
Q Consensus 89 ~~~~~~~~~~~~l~~--l~~~l~pgG~~~ 115 (175)
++......++.. +...+++|..++
T Consensus 66 ---~~~~~v~~v~~~~~i~~~l~~g~iii 91 (163)
T PF03446_consen 66 ---PDDDAVEAVLFGENILAGLRPGKIII 91 (163)
T ss_dssp ---SSHHHHHHHHHCTTHGGGS-TTEEEE
T ss_pred ---ccchhhhhhhhhhHHhhccccceEEE
Confidence 334455677777 777777765333
No 436
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=81.02 E-value=3.3 Score=28.10 Aligned_cols=102 Identities=14% Similarity=0.088 Sum_probs=50.4
Q ss_pred EEEeCCCccHHHHH-HHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCccee-eccCCCCCCCCCCCccEEEeCCccc
Q 030565 12 CIELGSGTGALAIF-LRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI-KHSWGDAFPIPNPDWDLILASDILL 89 (175)
Q Consensus 12 vLDlGcG~G~~~~~-l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (175)
|.=||+|.+..++. .....+.+|+....+++.+ +.++..............- .....++++..-..-|+|+..-.-
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~-~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs- 79 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQI-EEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS- 79 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHH-HHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G-
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHH-HHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH-
Confidence 45578887555532 2233377899999999776 5554433321111111100 000112222112345777764222
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030565 90 YVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 90 ~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
..+..+++++...++++-.+++...+
T Consensus 80 -----~~~~~~~~~l~~~l~~~~~ii~~~KG 105 (157)
T PF01210_consen 80 -----QAHREVLEQLAPYLKKGQIIISATKG 105 (157)
T ss_dssp -----GGHHHHHHHHTTTSHTT-EEEETS-S
T ss_pred -----HHHHHHHHHHhhccCCCCEEEEecCC
Confidence 12448888898888777655554333
No 437
>PRK08324 short chain dehydrogenase; Validated
Probab=80.77 E-value=12 Score=31.99 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=24.8
Q ss_pred ccCCCcEEEeCCCccHHHHHHHH---hCCCcEEEEeCChHHH
Q 030565 6 WIERRRCIELGSGTGALAIFLRK---AMNLDITTSDYNDQEI 44 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~---~~~~~v~~~D~s~~~l 44 (175)
.++|+++|=.|++ |.++..+++ ..|.+|+++|.++..+
T Consensus 419 ~l~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~ 459 (681)
T PRK08324 419 PLAGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAA 459 (681)
T ss_pred CCCCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHH
Confidence 3467888888753 333333322 2378999999998765
No 438
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=80.22 E-value=7.3 Score=28.95 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=54.4
Q ss_pred ccCCCcEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-C-CCCCCccE
Q 030565 6 WIERRRCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-P-IPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~fD~ 81 (175)
..++.+|+-.|| | .|.....+++..+..|++++.++... +.++. . +....+.....+..+.. . .....+|+
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~-~~~~~-~---g~~~~~~~~~~~~~~~i~~~~~~~~~d~ 211 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKL-ALARA-L---GADHVIDYRDPDLRERVKALTGGRGVDV 211 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHH-HHHHH-c---CCceeeecCCccHHHHHHHHcCCCCcEE
Confidence 345788999998 3 57777778887788999999887664 33321 1 11000000000000000 0 12235888
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++.... . ..+....+.++++|+++..
T Consensus 212 v~~~~g-----~-----~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 212 VYDPVG-----G-----DVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred EEECcc-----H-----HHHHHHHHhhccCCEEEEE
Confidence 875321 1 3445677888999987754
No 439
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=80.21 E-value=1.5 Score=32.48 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=37.6
Q ss_pred HHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcccCcccchHHHHHH
Q 030565 23 AIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSL 101 (175)
Q Consensus 23 ~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~l 101 (175)
++.+.+.. ..+|+++|.++..+ +.+.+ . +.. .... .... .-..+|+|+.+-.+ .....++
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~-~~a~~---~-g~~---~~~~----~~~~-~~~~~DlvvlavP~------~~~~~~l 62 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETL-EAALE---L-GII---DEAS----TDIE-AVEDADLVVLAVPV------SAIEDVL 62 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHH-HHHHH---T-TSS---SEEE----SHHH-HGGCCSEEEE-S-H------HHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHH-HHHHH---C-CCe---eecc----CCHh-HhcCCCEEEEcCCH------HHHHHHH
Confidence 55665653 37899999999776 33221 1 220 1110 0000 11346988876443 3455888
Q ss_pred HHHHhhcCCCCc
Q 030565 102 SVLLKSYKPKDS 113 (175)
Q Consensus 102 ~~l~~~l~pgG~ 113 (175)
+++...+++|+.
T Consensus 63 ~~~~~~~~~~~i 74 (258)
T PF02153_consen 63 EEIAPYLKPGAI 74 (258)
T ss_dssp HHHHCGS-TTSE
T ss_pred HHhhhhcCCCcE
Confidence 888888887753
No 440
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=79.98 E-value=6.5 Score=31.12 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=21.6
Q ss_pred EEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHH
Q 030565 12 CIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIE 45 (175)
Q Consensus 12 vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~ 45 (175)
|-=+|.|. |.....+... |.+|+++|++++.++
T Consensus 3 I~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~ 36 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVA 36 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHH
Confidence 44457774 5444333333 788999999998873
No 441
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=79.95 E-value=21 Score=27.11 Aligned_cols=97 Identities=12% Similarity=0.099 Sum_probs=55.1
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-C-CCCCCccE
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-P-IPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~fD~ 81 (175)
..++.+||=.|+|. |..+..+++..+ .+|++++.+++.. +.++. .+....+..... +...+ . .....+|+
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~-~~~~~----~g~~~~~~~~~~-~~~~i~~~~~~~~~dv 238 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEAL-KLAER----LGADHVLNASDD-VVEEVRELTGGRGADA 238 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHH-HHHHH----hCCcEEEcCCcc-HHHHHHHHhCCCCCCE
Confidence 34577888888764 666677778767 7899998887654 33321 111000000000 00001 1 11235898
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+..-. .+ ..+++..+.++++|+++..
T Consensus 239 vld~~g------~~---~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 239 VIDFVG------SD---ETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred EEEcCC------CH---HHHHHHHHHhhcCCEEEEE
Confidence 886311 11 5577788899999988765
No 442
>PRK07806 short chain dehydrogenase; Provisional
Probab=79.79 E-value=20 Score=25.78 Aligned_cols=34 Identities=9% Similarity=0.106 Sum_probs=21.6
Q ss_pred cCCCcEEEeCCCccHHHHHHHHh---CCCcEEEEeCCh
Q 030565 7 IERRRCIELGSGTGALAIFLRKA---MNLDITTSDYND 41 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~---~~~~v~~~D~s~ 41 (175)
++++++|=.|+. |.++..+++. .+.+|++++.+.
T Consensus 4 ~~~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 4 LPGKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 467889988863 3344443332 277898887754
No 443
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=79.77 E-value=15 Score=30.14 Aligned_cols=151 Identities=14% Similarity=0.080 Sum_probs=72.6
Q ss_pred CcEEEeCCCc-c-HHHHHHHHhCCCcEEEEeCChHHHHHHHH---H----HHhhCCCCC-----CcceeeccCCCCCCCC
Q 030565 10 RRCIELGSGT-G-ALAIFLRKAMNLDITTSDYNDQEIEDNIA---Y----NSTTNGITP-----ALPHIKHSWGDAFPIP 75 (175)
Q Consensus 10 ~~vLDlGcG~-G-~~~~~l~~~~~~~v~~~D~s~~~l~~~~~---~----~~~~~~~~~-----~~~~~~~~~~~~~~~~ 75 (175)
++|-=||+|+ | ..+..+++. |.+|+.+|.+++.++.... + ......... ....+ ....++..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~a-G~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i--~~~~~~~~- 81 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASA-GHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRL--IPVTDLHA- 81 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcc--EEeCCHHH-
Confidence 4577788886 3 334445554 8899999999988742211 1 111111100 00001 11112211
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCC------------C-CCCCCCCCce-Eeee--
Q 030565 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQG------------E-GTEGLPWPAF-LMSW-- 139 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~------------~-~~~~~~~~~~-~~~~-- 139 (175)
-..-|+|+.+-. ++.+--..+++++.+.++|+..+...+...... . .+++.+.+.. +...
T Consensus 82 l~~aDlVIEav~----E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~ 157 (503)
T TIGR02279 82 LADAGLVIEAIV----ENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVS 157 (503)
T ss_pred hCCCCEEEEcCc----CcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeC
Confidence 125688887522 333444477888888888876443332222111 0 1222222211 1111
Q ss_pred eccCCCcchhHHHHHHHHcCCeeEEecce
Q 030565 140 RRRIGKEDETIFFTSCENAGLEVKHLGSR 168 (175)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 168 (175)
.........+....+++..|-.+..+++.
T Consensus 158 g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~ 186 (503)
T TIGR02279 158 GLATAAEVAEQLYETALAWGKQPVHCHST 186 (503)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeeeEeCCC
Confidence 11122223456677788888777777653
No 444
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=79.77 E-value=5.7 Score=30.88 Aligned_cols=98 Identities=13% Similarity=0.059 Sum_probs=57.1
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceee--ccCCCCC-CCCCCCcc
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIK--HSWGDAF-PIPNPDWD 80 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~fD 80 (175)
..++.+||=.|+|. |..+..+|+..+. +|+++|.+++.+ +.+++. +....+.... .++.+.. ....+.+|
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~-~~a~~~----Ga~~~i~~~~~~~~~~~~v~~~~~~g~d 257 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKF-ELAKKL----GATDCVNPNDYDKPIQEVIVEITDGGVD 257 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHHh----CCCeEEcccccchhHHHHHHHHhCCCCC
Confidence 44688899899975 8888888888887 799999998765 443321 1100000000 0000000 01112578
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCC-Cceeec
Q 030565 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pg-G~~~~~ 117 (175)
+++-.-. .+ ..+.+..++++++ |++++.
T Consensus 258 ~vid~~G------~~---~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 258 YSFECIG------NV---NVMRAALECCHKGWGESIII 286 (368)
T ss_pred EEEECCC------CH---HHHHHHHHHhhcCCCeEEEE
Confidence 8876422 12 5667778888886 887765
No 445
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=79.71 E-value=8 Score=29.48 Aligned_cols=92 Identities=12% Similarity=0.051 Sum_probs=54.1
Q ss_pred ccCCCcEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC---CC-CCCCCc
Q 030565 6 WIERRRCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FP-IPNPDW 79 (175)
Q Consensus 6 ~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~f 79 (175)
..++.+||=.|+ | .|..+..+++..+.++++++.++ .. +.++. .+. ..+....... .. .....+
T Consensus 175 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~-~~~~~----~g~----~~~~~~~~~~~~~~~~~~~~~~ 244 (350)
T cd08274 175 VGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KE-EAVRA----LGA----DTVILRDAPLLADAKALGGEPV 244 (350)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hh-HHHHh----cCC----eEEEeCCCccHHHHHhhCCCCC
Confidence 346788888887 4 48888888888899998888654 32 33321 122 1110000000 11 123468
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|+.... . ..+....++++++|+++..
T Consensus 245 d~vi~~~g-------~---~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 245 DVVADVVG-------G---PLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred cEEEecCC-------H---HHHHHHHHHhccCCEEEEe
Confidence 99885321 1 3567788899999987754
No 446
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=79.40 E-value=11 Score=28.76 Aligned_cols=97 Identities=12% Similarity=0.151 Sum_probs=53.5
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC-CC-CCCCCccEE
Q 030565 7 IERRRCIELGSGT-GALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FP-IPNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~fD~i 82 (175)
.++.+||=.|+|. |..+..+++..+ .+|+++|.++... ..++. . +....+.....++... .. .....+|++
T Consensus 165 ~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~-~~~~~-~---g~~~~v~~~~~~~~~~i~~~~~~~~~d~v 239 (345)
T cd08286 165 KPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRL-EVAKK-L---GATHTVNSAKGDAIEQVLELTDGRGVDVV 239 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHH-h---CCCceeccccccHHHHHHHHhCCCCCCEE
Confidence 3566766678763 666677888778 7899998877553 33321 1 1100011100000000 01 122368988
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+... . .. ..++.+.+.++++|+++..
T Consensus 240 ld~~-----g-~~---~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 240 IEAV-----G-IP---ATFELCQELVAPGGHIANV 265 (345)
T ss_pred EECC-----C-CH---HHHHHHHHhccCCcEEEEe
Confidence 8532 1 11 4567788999999988754
No 447
>PRK13243 glyoxylate reductase; Reviewed
Probab=79.12 E-value=4.3 Score=31.33 Aligned_cols=38 Identities=13% Similarity=0.063 Sum_probs=28.6
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHH
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQE 43 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~ 43 (175)
.+.|++|.=+|.|. |......++.++.+|.++|.++..
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~ 185 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKP 185 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCCh
Confidence 45789999999986 665544446668899999987643
No 448
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=79.00 E-value=31 Score=27.60 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=28.4
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHH
Q 030565 7 IERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEI 44 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l 44 (175)
.++++|+=+|+|. |......+...+. +|+.++.++...
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra 219 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERA 219 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHH
Confidence 5789999999985 7666554444464 799999988654
No 449
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=78.96 E-value=5.4 Score=28.01 Aligned_cols=102 Identities=13% Similarity=0.154 Sum_probs=45.5
Q ss_pred cEEEeCCCc-cHHHH-HHHHhCCCcEEEEeCChHHHHHHHHHH-HhhCCCCCCccee--------eccCCCCCCCCCCCc
Q 030565 11 RCIELGSGT-GALAI-FLRKAMNLDITTSDYNDQEIEDNIAYN-STTNGITPALPHI--------KHSWGDAFPIPNPDW 79 (175)
Q Consensus 11 ~vLDlGcG~-G~~~~-~l~~~~~~~v~~~D~s~~~l~~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~~~~~~~f 79 (175)
+|-=+|.|. |.... .+|+. |.+|+|+|+++..+ +.+... ..... .....+ .+....+....-...
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~-G~~V~g~D~~~~~v-~~l~~g~~p~~E--~~l~~ll~~~~~~~~l~~t~~~~~ai~~a 77 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEK-GHQVIGVDIDEEKV-EALNNGELPIYE--PGLDELLKENVSAGRLRATTDIEEAIKDA 77 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHT-TSEEEEE-S-HHHH-HHHHTTSSSS-C--TTHHHHHHHHHHTTSEEEESEHHHHHHH-
T ss_pred EEEEECCCcchHHHHHHHHhC-CCEEEEEeCChHHH-HHHhhccccccc--cchhhhhccccccccchhhhhhhhhhhcc
Confidence 455567775 65543 45444 89999999999876 332211 00000 000000 000000111001235
Q ss_pred cEEEeC-Cccc---CcccchHHHHHHHHHHhhcCCCCceee
Q 030565 80 DLILAS-DILL---YVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 80 D~i~~~-~~l~---~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
|+++.. ..-+ ...+...+..+++.+.+.++++-.+++
T Consensus 78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~ 118 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVI 118 (185)
T ss_dssp SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEE
T ss_pred ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEE
Confidence 665543 2211 112445678999999999999654444
No 450
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=78.96 E-value=31 Score=27.56 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=23.8
Q ss_pred CcEEEeCCCc-cHH-HHHHHHhCCCcEEEEeCChHHH
Q 030565 10 RRCIELGSGT-GAL-AIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 10 ~~vLDlGcG~-G~~-~~~l~~~~~~~v~~~D~s~~~l 44 (175)
.+|.=||.|. |.. +..+++. |.+|+++|.++..+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~~~v 39 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR-QKQVIGVDINQHAV 39 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC-CCEEEEEeCCHHHH
Confidence 4577778885 333 3445454 78999999999876
No 451
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=78.90 E-value=6.9 Score=30.41 Aligned_cols=98 Identities=17% Similarity=0.148 Sum_probs=55.0
Q ss_pred CccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030565 3 HREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
|.+.+.+++||=+|--...+...++ ....+++..+++... ..+.. . +. ...+..... ......||.|
T Consensus 14 ~~~~~~~~~~l~~~~~~d~~~~~l~-~~~~~~~~~~~~~~~---~~~~~--~-~~-----~~~f~~~~~-~~~~~~~d~~ 80 (342)
T PRK09489 14 HSDDFEQRRVLFAGDLQDDLPAQLD-AASVRVHTQQFHHWQ---VLSRQ--M-GD-----NARFSLVAT-AEDVADCDTL 80 (342)
T ss_pred hHHHhCCCcEEEEcCcchhhHHhhh-ccceEEehhhhHHHH---HHHhh--c-CC-----ceEeccccC-CccCCCCCEE
Confidence 3345677778877766666555553 212345544443321 11111 0 11 112221111 1123579998
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+.- ..-..+...-.+..+.+.|+|||.+++.
T Consensus 81 ~~~----~pk~k~~~~~~l~~~~~~l~~g~~i~~~ 111 (342)
T PRK09489 81 IYY----WPKNKQEAQFQLMNLLSLLPVGTDIFVV 111 (342)
T ss_pred EEE----CCCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 873 4455666778999999999999999988
No 452
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=78.78 E-value=7.6 Score=30.01 Aligned_cols=92 Identities=5% Similarity=0.036 Sum_probs=52.7
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030565 5 EWIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..+++++|.=||.|+ |.-....++..|.+|++.|.+.... +.+. ..+. .. . .+...-..-|+|+
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~-~~A~----~~G~----~v--~----sl~Eaak~ADVV~ 76 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSF-EVAK----ADGF----EV--M----SVSEAVRTAQVVQ 76 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhh-HHHH----HcCC----EE--C----CHHHHHhcCCEEE
Confidence 567889999998886 5544333344588998887543332 2111 1122 00 0 1111123458888
Q ss_pred eCCcccCcccchHHHHHH-HHHHhhcCCCCceeec
Q 030565 84 ASDILLYVKQYSNLIKSL-SVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l-~~l~~~l~pgG~~~~~ 117 (175)
..-. +. ....++ +++...++||..++++
T Consensus 77 llLP-----d~-~t~~V~~~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 77 MLLP-----DE-QQAHVYKAEVEENLREGQMLLFS 105 (335)
T ss_pred EeCC-----Ch-HHHHHHHHHHHhcCCCCCEEEEC
Confidence 7533 22 223555 5789999999988887
No 453
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=78.33 E-value=6.5 Score=29.52 Aligned_cols=93 Identities=15% Similarity=0.247 Sum_probs=53.0
Q ss_pred CCcEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEEEeC
Q 030565 9 RRRCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILAS 85 (175)
Q Consensus 9 ~~~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i~~~ 85 (175)
+.+||=.|+ | .|..+..+++..|.+|+.++.+++.. +.++. .+....+..... ..... ....+.+|+|+..
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~-~~~~~----~g~~~~~~~~~~-~~~~~~~~~~~~~d~vi~~ 220 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQA-DYLKS----LGASEVLDREDL-LDESKKPLLKARWAGAIDT 220 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHh----cCCcEEEcchhH-HHHHHHHhcCCCccEEEEC
Confidence 357776775 3 47777888888898999999988664 33321 111000000000 00000 0112357888753
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. .. ..+.+..++++++|+++..
T Consensus 221 --~---~~-----~~~~~~~~~l~~~g~~v~~ 242 (325)
T cd05280 221 --V---GG-----DVLANLLKQTKYGGVVASC 242 (325)
T ss_pred --C---ch-----HHHHHHHHhhcCCCEEEEE
Confidence 2 11 4677888899999987765
No 454
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=78.31 E-value=16 Score=28.41 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=25.2
Q ss_pred cCCCcEEEeCCCc-cHHH-HHHHHhCCCcEEEEeCCh
Q 030565 7 IERRRCIELGSGT-GALA-IFLRKAMNLDITTSDYND 41 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~-~~l~~~~~~~v~~~D~s~ 41 (175)
+.+++||=+|||. |... ..|+..+-.+++.+|.+.
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4678999999985 6655 446555345799999874
No 455
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=77.90 E-value=12 Score=28.36 Aligned_cols=99 Identities=22% Similarity=0.221 Sum_probs=47.5
Q ss_pred cEEEeCCCc-cH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCccee-eccCCCCCCCCCCCccEEEeCCc
Q 030565 11 RCIELGSGT-GA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI-KHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 11 ~vLDlGcG~-G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
+|.=||+|. |. ++..+++. +.+|+.+|.++..+ +.++............... ......+........|+|+..--
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-GHDVTLWARDPEQA-AEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVP 80 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCHHHH-HHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCC
Confidence 466677764 33 33444443 77899999998775 3333221000000000000 00001111111135688776522
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
......+++++...++|+..++..
T Consensus 81 ------~~~~~~v~~~l~~~~~~~~~vi~~ 104 (325)
T PRK00094 81 ------SQALREVLKQLKPLLPPDAPIVWA 104 (325)
T ss_pred ------HHHHHHHHHHHHhhcCCCCEEEEE
Confidence 124557788888888876544433
No 456
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=77.86 E-value=8.3 Score=29.40 Aligned_cols=47 Identities=13% Similarity=-0.024 Sum_probs=37.2
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHH
Q 030565 5 EWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNS 52 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~ 52 (175)
...+++..+|.==|.|..+..+.+.++ .+++++|.++.++ +.++...
T Consensus 20 ~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai-~~a~~~l 68 (314)
T COG0275 20 APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAI-AIAKERL 68 (314)
T ss_pred ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHH-HHHHHHh
Confidence 344668899999999999998888764 5699999999998 5555443
No 457
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=77.78 E-value=4.5 Score=29.49 Aligned_cols=43 Identities=14% Similarity=0.184 Sum_probs=34.1
Q ss_pred CCccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHH
Q 030565 2 HHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 2 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
++.....+.-|.+||-|.|..+..+..........+++++.-+
T Consensus 44 K~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFi 86 (326)
T KOG0821|consen 44 KKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFI 86 (326)
T ss_pred HhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccC
Confidence 3455667788999999999999998877666788888877543
No 458
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=77.64 E-value=17 Score=27.00 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=54.7
Q ss_pred CCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 8 ERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 8 ~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
++.+|+=.|+ +.|..+..+++..+.+|++++.+++.. +.++. .+. ....... . ...++.+|+++..
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~-~~~~~----~g~----~~~~~~~-~--~~~~~~~d~vl~~ 199 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARA-EGLRE----LGA----AEVVVGG-S--ELSGAPVDLVVDS 199 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHH----cCC----cEEEecc-c--cccCCCceEEEEC
Confidence 4777887777 357777888888899999998877654 44332 112 1110000 1 1122468888853
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. .. ..+.+..++++++|+++..
T Consensus 200 --~---g~-----~~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 200 --V---GG-----PQLARALELLAPGGTVVSV 221 (305)
T ss_pred --C---Cc-----HHHHHHHHHhcCCCEEEEE
Confidence 2 11 3467788999999988765
No 459
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=77.58 E-value=7.8 Score=29.42 Aligned_cols=98 Identities=12% Similarity=0.130 Sum_probs=54.2
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHh-CCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceee-ccCCCCCCCCCCCccEE
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKA-MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK-HSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~fD~i 82 (175)
..++.+||=.|+|. |..+..+++. .+.+|++++.+++.. +.++.. +....+.... ..+.+.+....+.+|++
T Consensus 160 ~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~-~~~~~~----g~~~v~~~~~~~~~~~~v~~~~~~~d~v 234 (338)
T PRK09422 160 IKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKL-ALAKEV----GADLTINSKRVEDVAKIIQEKTGGAHAA 234 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHH-HHHHHc----CCcEEecccccccHHHHHHHhcCCCcEE
Confidence 34677888888764 7777888886 488999999988765 444321 1100000000 00000000001246744
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+... . .. ..+....+.++++|+++..
T Consensus 235 i~~~-~-----~~---~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 235 VVTA-V-----AK---AAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred EEeC-C-----CH---HHHHHHHHhccCCCEEEEE
Confidence 4321 1 12 5678889999999988765
No 460
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=77.53 E-value=22 Score=25.19 Aligned_cols=35 Identities=20% Similarity=0.068 Sum_probs=23.6
Q ss_pred cCCCcEEEeCCCc-cHHH-HHHHHhCCCcEEEEeCCh
Q 030565 7 IERRRCIELGSGT-GALA-IFLRKAMNLDITTSDYND 41 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~-~~l~~~~~~~v~~~D~s~ 41 (175)
+.+++||=+|||. |... ..|+..+-.+++.+|.+.
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 4578899999985 4443 445555445689998763
No 461
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=77.35 E-value=5.6 Score=30.31 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=30.6
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHH
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
.-.|.+|.-+|+|--....+++.. -.+|.++|+++..|
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr~-Pa~id~VDlN~ahi 98 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSRA-PARIDVVDLNPAHI 98 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhcC-CceeEEEeCCHHHH
Confidence 446788999999977666677665 77899999999876
No 462
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=77.28 E-value=9.8 Score=30.15 Aligned_cols=73 Identities=16% Similarity=0.223 Sum_probs=43.5
Q ss_pred CcEEEeCCCc-cHHHHH-HHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCCCCccEEEeC
Q 030565 10 RRCIELGSGT-GALAIF-LRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLILAS 85 (175)
Q Consensus 10 ~~vLDlGcG~-G~~~~~-l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~i~~~ 85 (175)
++||=||||. |+.... +++....+|+..|-|...+ ..+...... ++....++..+... ..-..+|+|++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~-~~i~~~~~~-----~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKC-ARIAELIGG-----KVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHH-HHHHhhccc-----cceeEEecccChHHHHHHHhcCCEEEEe
Confidence 4689999974 776655 4555347899999998665 333222211 34555565544321 112345999886
Q ss_pred Ccc
Q 030565 86 DIL 88 (175)
Q Consensus 86 ~~l 88 (175)
-..
T Consensus 76 ~p~ 78 (389)
T COG1748 76 APP 78 (389)
T ss_pred CCc
Confidence 543
No 463
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=77.22 E-value=5.3 Score=27.11 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=22.5
Q ss_pred CcEEEeCCCccHHHHHHHHhC-CCcEEEEeCC
Q 030565 10 RRCIELGSGTGALAIFLRKAM-NLDITTSDYN 40 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s 40 (175)
+-|||+|=|+|+.--.+...+ +..|+.+|-.
T Consensus 30 G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred CceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 569999999999988887766 7789999983
No 464
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=77.21 E-value=9.8 Score=27.03 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=29.1
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHH
Q 030565 5 EWIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
..++|++|+=+|.|. |..........|.+|+++|.++..+
T Consensus 24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~ 64 (200)
T cd01075 24 DSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAV 64 (200)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 456789999999984 5544333334488999999998765
No 465
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=77.09 E-value=25 Score=26.42 Aligned_cols=91 Identities=13% Similarity=0.129 Sum_probs=53.8
Q ss_pred cCCCcEEEeCCC--ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC-C-----CC-CCCC
Q 030565 7 IERRRCIELGSG--TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-A-----FP-IPNP 77 (175)
Q Consensus 7 ~~~~~vLDlGcG--~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~-~~~~ 77 (175)
.++.++|=.|++ .|.....+++..+.+|+.++.++... +.+.. .+. ..+ ++..+ . .. ....
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~-~~~~~----~~~----~~~-~~~~~~~~~~~~~~~~~~~ 234 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKL-ERAKE----LGA----DYV-IDYRKEDFVREVRELTGKR 234 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHH----cCC----CeE-EecCChHHHHHHHHHhCCC
Confidence 457788888874 57777777787788999999887654 33321 111 000 11110 0 00 1123
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+|+++....- ..+.++.+.++++|+++..
T Consensus 235 ~~d~~i~~~g~----------~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 235 GVDVVVEHVGA----------ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred CCcEEEECCcH----------HHHHHHHHHhhcCCEEEEE
Confidence 68888864321 3456677888999987765
No 466
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=77.07 E-value=11 Score=28.05 Aligned_cols=91 Identities=15% Similarity=0.156 Sum_probs=56.1
Q ss_pred cCCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCC---C-CCCCCCCCcc
Q 030565 7 IERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG---D-AFPIPNPDWD 80 (175)
Q Consensus 7 ~~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~fD 80 (175)
.++.+||=.|+ +.|..+..+++..+.+|+++..+++.. +.+.. .+. ..+..... + .... .+.+|
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~-~~~~~----~g~----~~~~~~~~~~~~~i~~~-~~~~d 210 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERA-ALLKE----LGA----DEVVIDDGAIAEQLRAA-PGGFD 210 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHh----cCC----cEEEecCccHHHHHHHh-CCCce
Confidence 35778887886 458888889998899999998888654 33321 111 11100000 0 0112 34689
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+++.. . . . ..+.+..+.++++|+++..
T Consensus 211 ~vl~~--~---~--~---~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 211 KVLEL--V---G--T---ATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred EEEEC--C---C--h---HHHHHHHHHhccCCEEEEE
Confidence 88853 2 1 1 4567788999999988764
No 467
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=76.96 E-value=11 Score=28.83 Aligned_cols=98 Identities=11% Similarity=0.133 Sum_probs=56.3
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceee-ccCCC-CCCCCCCCccEE
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK-HSWGD-AFPIPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~fD~i 82 (175)
..++.+||=.|+|. |..+..+++..+.+|++++.+++.. +.++. . +....+.... .+... ......+.+|++
T Consensus 163 ~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~-~~~~~-~---g~~~~i~~~~~~~~~~~~~~~~~~~~d~v 237 (345)
T cd08260 163 VKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKL-ELARE-L---GAVATVNASEVEDVAAAVRDLTGGGAHVS 237 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHH-HHHHH-h---CCCEEEccccchhHHHHHHHHhCCCCCEE
Confidence 34567888888763 7777888888899999998888664 44432 1 1100000000 00000 001111268988
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+.. . .. . ..+....+.++++|+++..
T Consensus 238 i~~--~---g~-~---~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 238 VDA--L---GI-P---ETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred EEc--C---CC-H---HHHHHHHHHhhcCCEEEEe
Confidence 864 2 11 1 4567788899999987765
No 468
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=76.94 E-value=9.3 Score=28.60 Aligned_cols=46 Identities=9% Similarity=0.083 Sum_probs=35.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHh
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST 53 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~ 53 (175)
...+..|||-=+|+|..+....+ .+..++++|+++..+ +...+...
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~-~~r~~ig~e~~~~y~-~~~~~r~~ 265 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKN-LGRRFIGIEINPEYV-EVALKRLQ 265 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHH-cCCceEEEecCHHHH-HHHHHHHH
Confidence 45689999999999998877744 499999999999886 44443333
No 469
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=76.92 E-value=6.3 Score=25.99 Aligned_cols=75 Identities=12% Similarity=0.171 Sum_probs=42.0
Q ss_pred ccCCCcEEEeCCC-ccHHHHH-HHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030565 6 WIERRRCIELGSG-TGALAIF-LRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG-~G~~~~~-l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
.++++++|=+|+| .|..... ++.....+|+.+.-+.+-. +.+...... . .+..+.+ ++.......+|+|+
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra-~~l~~~~~~--~--~~~~~~~---~~~~~~~~~~DivI 80 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERA-EALAEEFGG--V--NIEAIPL---EDLEEALQEADIVI 80 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHH-HHHHHHHTG--C--SEEEEEG---GGHCHHHHTESEEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHcCc--c--ccceeeH---HHHHHHHhhCCeEE
Confidence 4678999999997 4555544 5455334499999988665 333333311 1 1122221 12221234799999
Q ss_pred eCCcc
Q 030565 84 ASDIL 88 (175)
Q Consensus 84 ~~~~l 88 (175)
.+-..
T Consensus 81 ~aT~~ 85 (135)
T PF01488_consen 81 NATPS 85 (135)
T ss_dssp E-SST
T ss_pred EecCC
Confidence 87655
No 470
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=76.86 E-value=1.1 Score=30.66 Aligned_cols=99 Identities=14% Similarity=0.254 Sum_probs=51.3
Q ss_pred CCccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccE
Q 030565 2 HHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDL 81 (175)
Q Consensus 2 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 81 (175)
.|.+.++|++||=+|-=.-.+...+... +..|.+...+-.. ....... ..+.+..+...+ ....||.
T Consensus 6 R~~~~f~~k~vL~~g~~~D~~~~~L~~~-~~~v~~~~~~~~~---~~~~~~~--------~~~~~~f~~~~~-~~~~~D~ 72 (155)
T PF08468_consen 6 RNSDLFEGKSVLFAGDPQDDLPAQLPAI-AVSVHVFSYHHWY---ALQKQAQ--------SNVQFHFGAELP-ADQDFDT 72 (155)
T ss_dssp TTHHHHTT-EEEEEE---SSHHHHS--S-EEEEEESBHHHHH---HHHHHHG--------GGEEE-SS--HH-HHTT-SE
T ss_pred hhHHHHCCCeEEEEcCCchhhHHHhhhc-CCEEEEEEchHHH---HHhHhcc--------cCceEeeeccCC-cccCCCE
Confidence 4567788888988886555555555432 4456655532222 1111111 122233222221 1346999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+. |..-..+...-.|..+...|++||.++++
T Consensus 73 vvl----y~PKaK~e~~~lL~~l~~~L~~g~~i~vV 104 (155)
T PF08468_consen 73 VVL----YWPKAKAEAQYLLANLLSHLPPGTEIFVV 104 (155)
T ss_dssp EEE----E--SSHHHHHHHHHHHHTTS-TT-EEEEE
T ss_pred EEE----EccCcHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 987 45566677788899999999999998887
No 471
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=76.71 E-value=13 Score=27.49 Aligned_cols=13 Identities=8% Similarity=0.506 Sum_probs=10.9
Q ss_pred CcEEEEeCChHHH
Q 030565 32 LDITTSDYNDQEI 44 (175)
Q Consensus 32 ~~v~~~D~s~~~l 44 (175)
.+++.+|++++.+
T Consensus 27 ~el~L~D~~~~~l 39 (263)
T cd00650 27 IELVLYDIDEEKL 39 (263)
T ss_pred eEEEEEeCCcccc
Confidence 5899999998665
No 472
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=76.49 E-value=9.2 Score=29.73 Aligned_cols=146 Identities=14% Similarity=-0.008 Sum_probs=76.7
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeec-cCCCC-CCCCCCCcc
Q 030565 5 EWIERRRCIELGSGT-GALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH-SWGDA-FPIPNPDWD 80 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~fD 80 (175)
...+|.++.=+|||- |..++.-|+.. ...++++|++++.+ +.+++-...... +.... +..+. ...-++..|
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl-~~A~~fGAT~~v----n~~~~~~vv~~i~~~T~gG~d 256 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKL-ELAKKFGATHFV----NPKEVDDVVEAIVELTDGGAD 256 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHH-HHHHhcCCceee----cchhhhhHHHHHHHhcCCCCC
Confidence 445788999999974 88887766654 45699999999887 554432222111 11101 01000 011223455
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec-cccCCCCC----CCCCCCCCceEeeeec-cCCCcchhHHHHH
Q 030565 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH-LTKNEQGE----GTEGLPWPAFLMSWRR-RIGKEDETIFFTS 154 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 154 (175)
+++-.. . .. .+++..+.++.++|+.++. .+...... ..+... ..|..++.. -.+..+...|.++
T Consensus 257 ~~~e~~-----G-~~---~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv~g-r~~~Gs~~G~~~p~~diP~lv~~ 326 (366)
T COG1062 257 YAFECV-----G-NV---EVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLVTG-RVWKGSAFGGARPRSDIPRLVDL 326 (366)
T ss_pred EEEEcc-----C-CH---HHHHHHHHHHhcCCeEEEEecCCCCceeecChHHeecc-ceEEEEeecCCccccchhHHHHH
Confidence 553221 1 11 5777788888889988887 22221111 111122 333333322 1222344677777
Q ss_pred HHHcCCeeEEe
Q 030565 155 CENAGLEVKHL 165 (175)
Q Consensus 155 ~~~~g~~~~~~ 165 (175)
-.+..|.+.++
T Consensus 327 y~~Gkl~~d~l 337 (366)
T COG1062 327 YMAGKLPLDRL 337 (366)
T ss_pred HHcCCCchhHH
Confidence 77777765554
No 473
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.35 E-value=10 Score=27.67 Aligned_cols=35 Identities=11% Similarity=0.238 Sum_probs=28.6
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC---CCcEEEEeCChH
Q 030565 8 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQ 42 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~ 42 (175)
+.+.||=.||-.|..+..+++.+ |+.|+++--+-+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e 43 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLE 43 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccc
Confidence 46789999999999998887766 788999877654
No 474
>PRK08655 prephenate dehydrogenase; Provisional
Probab=76.24 E-value=17 Score=29.35 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=42.2
Q ss_pred cEEEeC-CCc-cH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030565 11 RCIELG-SGT-GA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 11 ~vLDlG-cG~-G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
+|.=+| +|. |. ++..+.+ .+.+|+++|.++....+.+. ..+. . . .......-...|+|+.+-.
T Consensus 2 kI~IIGG~G~mG~slA~~L~~-~G~~V~v~~r~~~~~~~~a~----~~gv----~-~----~~~~~e~~~~aDvVIlavp 67 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKE-KGFEVIVTGRDPKKGKEVAK----ELGV----E-Y----ANDNIDAAKDADIVIISVP 67 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHH-CCCEEEEEECChHHHHHHHH----HcCC----e-e----ccCHHHHhccCCEEEEecC
Confidence 355565 452 33 3334433 36789999998765422222 1111 0 0 0111111134688877533
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCce
Q 030565 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQ 114 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~ 114 (175)
. .....+++++...++|+..+
T Consensus 68 ~------~~~~~vl~~l~~~l~~~~iV 88 (437)
T PRK08655 68 I------NVTEDVIKEVAPHVKEGSLL 88 (437)
T ss_pred H------HHHHHHHHHHHhhCCCCCEE
Confidence 2 23347778888878877533
No 475
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=76.10 E-value=17 Score=27.46 Aligned_cols=92 Identities=13% Similarity=0.163 Sum_probs=54.6
Q ss_pred cCCCcEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 7 IERRRCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 7 ~~~~~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
.++.+||=.|+ | .|..+..+++..+.++++++.+++.. +.++.. ...-. ... .+....... +.+|+++.
T Consensus 161 ~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~-~~~~~~-~~~~~----~~~--~~~~~v~~~-~~~d~~ld 231 (334)
T PRK13771 161 KKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKA-KIVSKY-ADYVI----VGS--KFSEEVKKI-GGADIVIE 231 (334)
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHH-HHHhc----Cch--hHHHHHHhc-CCCcEEEE
Confidence 45677887887 3 48888888898899999999988765 333321 11001 000 000000001 24788875
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. . .. ..+.+..+.++++|+++..
T Consensus 232 ~--~---g~-----~~~~~~~~~l~~~G~~v~~ 254 (334)
T PRK13771 232 T--V---GT-----PTLEESLRSLNMGGKIIQI 254 (334)
T ss_pred c--C---Ch-----HHHHHHHHHHhcCCEEEEE
Confidence 3 2 11 3467788889999987765
No 476
>PRK07574 formate dehydrogenase; Provisional
Probab=75.82 E-value=8.9 Score=30.36 Aligned_cols=91 Identities=14% Similarity=0.071 Sum_probs=50.3
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
.+.|++|.=+|.|. |......++.++.+|+++|.+.... +..+ ..+. .. ...+...-..-|+|+.
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~-~~~~----~~g~----~~-----~~~l~ell~~aDvV~l 254 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPE-EVEQ----ELGL----TY-----HVSFDSLVSVCDVVTI 254 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCch-hhHh----hcCc----ee-----cCCHHHHhhcCCEEEE
Confidence 35788888889885 7655555566699999999876321 1111 1011 00 0111111234588888
Q ss_pred CCcccCcccchHHHHHH-HHHHhhcCCCCcee
Q 030565 85 SDILLYVKQYSNLIKSL-SVLLKSYKPKDSQV 115 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l-~~l~~~l~pgG~~~ 115 (175)
+-.+ .++-..++ ++....+|||..|+
T Consensus 255 ~lPl-----t~~T~~li~~~~l~~mk~ga~lI 281 (385)
T PRK07574 255 HCPL-----HPETEHLFDADVLSRMKRGSYLV 281 (385)
T ss_pred cCCC-----CHHHHHHhCHHHHhcCCCCcEEE
Confidence 6554 22222344 46777888876444
No 477
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=75.73 E-value=5.4 Score=25.16 Aligned_cols=85 Identities=12% Similarity=0.151 Sum_probs=43.5
Q ss_pred CCccHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCCCCCccEEEeCCcccC
Q 030565 17 SGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWDLILASDILLY 90 (175)
Q Consensus 17 cG~G~~~~~l~~~~---~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~i~~~~~l~~ 90 (175)
||.|..+..+++.+ +..|+.+|.+++.+ +.+... +. ..+..+..+.. ...-...|.+++..-
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~-~~~~~~----~~----~~i~gd~~~~~~l~~a~i~~a~~vv~~~~--- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERV-EELREE----GV----EVIYGDATDPEVLERAGIEKADAVVILTD--- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHH-HHHHHT----TS----EEEES-TTSHHHHHHTTGGCESEEEEESS---
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHH-HHHHhc----cc----ccccccchhhhHHhhcCccccCEEEEccC---
Confidence 56677776665544 44799999999776 333211 12 23333332211 112246777666422
Q ss_pred cccchHHHHHHHHHHhhcCCCCceee
Q 030565 91 VKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 91 ~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
.+.....+....+.+.|...++.
T Consensus 72 ---~d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 72 ---DDEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp ---SHHHHHHHHHHHHHHTTTSEEEE
T ss_pred ---CHHHHHHHHHHHHHHCCCCeEEE
Confidence 12222445555666677665554
No 478
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=75.32 E-value=6.8 Score=27.18 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=31.3
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHH
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
...|++|.=+|+|. |......++.+|.+|+++|.+...-
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~ 72 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPE 72 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHH
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChh
Confidence 45789999999985 8777777788899999999999763
No 479
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=75.25 E-value=28 Score=25.62 Aligned_cols=93 Identities=20% Similarity=0.211 Sum_probs=52.7
Q ss_pred ccCCCcEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEE
Q 030565 6 WIERRRCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i 82 (175)
..++.+||=.|+ | .|..+..+++..+.+|+.++.++ .. +.++. .+.. ..+.....+.. ......+|++
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~-~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~d~v 212 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NA-DFLRS----LGAD---EVIDYTKGDFERAAAPGGVDAV 212 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hH-HHHHH----cCCC---EEEeCCCCchhhccCCCCceEE
Confidence 345778887775 3 47777778888788988887665 43 33321 1110 01110000100 1223458888
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+.. . .. ..+....+.++++|+++..
T Consensus 213 ~~~--~---~~-----~~~~~~~~~l~~~g~~v~~ 237 (309)
T cd05289 213 LDT--V---GG-----ETLARSLALVKPGGRLVSI 237 (309)
T ss_pred EEC--C---ch-----HHHHHHHHHHhcCcEEEEE
Confidence 753 1 11 3567778889999988765
No 480
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=75.22 E-value=9.4 Score=26.19 Aligned_cols=41 Identities=15% Similarity=0.265 Sum_probs=31.8
Q ss_pred ccccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHH
Q 030565 4 REWIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
+.-.++.+|+=+|.|. |.-+..+++..+.+|+..|..+..+
T Consensus 15 ~~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~ 56 (168)
T PF01262_consen 15 PGGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERL 56 (168)
T ss_dssp TTEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHH
T ss_pred CCCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHH
Confidence 3445678999999996 8888888888899999999988665
No 481
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=75.21 E-value=26 Score=24.92 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=24.4
Q ss_pred cCCCcEEEeCCCc-cHHH-HHHHHhCCCcEEEEeCC
Q 030565 7 IERRRCIELGSGT-GALA-IFLRKAMNLDITTSDYN 40 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~-~~l~~~~~~~v~~~D~s 40 (175)
+..++|+=+|||. |... ..+++.+-.+++.+|.+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4678899999984 6654 44655533369999998
No 482
>PRK08818 prephenate dehydrogenase; Provisional
Probab=74.60 E-value=7.8 Score=30.48 Aligned_cols=33 Identities=33% Similarity=0.385 Sum_probs=23.3
Q ss_pred CCCcEEEeCC-Cc--cHHHHHHHHhCCCcEEEEeCC
Q 030565 8 ERRRCIELGS-GT--GALAIFLRKAMNLDITTSDYN 40 (175)
Q Consensus 8 ~~~~vLDlGc-G~--G~~~~~l~~~~~~~v~~~D~s 40 (175)
...+|.=||. |- |.++..+.+..+.+|+++|.+
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~ 38 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPA 38 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 3457888887 74 566666654447789999985
No 483
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=74.19 E-value=15 Score=27.51 Aligned_cols=97 Identities=19% Similarity=0.234 Sum_probs=53.7
Q ss_pred ccCCCcEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-C-CCCCCccE
Q 030565 6 WIERRRCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-P-IPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~fD~ 81 (175)
..++.+||=.|+ | .|..+..+|+..|.+++.+.-+++.. +.++. . +....+.....++.... . .....+|+
T Consensus 137 ~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~-~~~~~-~---g~~~~~~~~~~~~~~~i~~~~~~~~~d~ 211 (324)
T cd08292 137 VKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGV-AELRA-L---GIGPVVSTEQPGWQDKVREAAGGAPISV 211 (324)
T ss_pred CCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHH-HHHHh-c---CCCEEEcCCCchHHHHHHHHhCCCCCcE
Confidence 345677777775 4 58888889898899988886666553 33322 1 22000000000000000 1 11236899
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+.. . .. ..+.+..+.++++|+++..
T Consensus 212 v~d~--~---g~-----~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 212 ALDS--V---GG-----KLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred EEEC--C---CC-----hhHHHHHHhhcCCcEEEEE
Confidence 8853 2 11 2346778899999988765
No 484
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=74.07 E-value=5.2 Score=30.63 Aligned_cols=89 Identities=9% Similarity=0.027 Sum_probs=49.7
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030565 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..+++|.=+|.|. |.-....++.+|.+|+++|.++... . +. .. ..-.+.+...-..-|+|+.+
T Consensus 134 l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~-~---------~~----~~--~~~~~~l~e~l~~aDvvv~~ 197 (312)
T PRK15469 134 REDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSW-P---------GV----QS--FAGREELSAFLSQTRVLINL 197 (312)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCC-C---------Cc----ee--ecccccHHHHHhcCCEEEEC
Confidence 4678898888885 7655555566799999999865321 0 00 00 00001111112345888875
Q ss_pred CcccCcccchHHHHHH-HHHHhhcCCCCceee
Q 030565 86 DILLYVKQYSNLIKSL-SVLLKSYKPKDSQVG 116 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l-~~l~~~l~pgG~~~~ 116 (175)
-.+ .+.-..++ ++....+|||..++=
T Consensus 198 lPl-----t~~T~~li~~~~l~~mk~ga~lIN 224 (312)
T PRK15469 198 LPN-----TPETVGIINQQLLEQLPDGAYLLN 224 (312)
T ss_pred CCC-----CHHHHHHhHHHHHhcCCCCcEEEE
Confidence 443 33333444 467888899864433
No 485
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=74.02 E-value=22 Score=27.12 Aligned_cols=97 Identities=12% Similarity=0.089 Sum_probs=54.0
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-C-CCCCCccEE
Q 030565 7 IERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-P-IPNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~fD~i 82 (175)
.++.+||=.|||. |..+..+++..+.+ +++++.++... +.++.. +....+......+.+.+ . .....+|++
T Consensus 167 ~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~-~~~~~~----ga~~v~~~~~~~~~~~i~~~~~~~~~d~i 241 (345)
T cd08287 167 RPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQ-ALAREF----GATDIVAERGEEAVARVRELTGGVGADAV 241 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHc----CCceEecCCcccHHHHHHHhcCCCCCCEE
Confidence 3456666578874 77778888888876 89998877443 222211 11000000000000001 1 122357888
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+.. . . .+ ..+....+.++++|+++..
T Consensus 242 l~~--~---g-~~---~~~~~~~~~l~~~g~~v~~ 267 (345)
T cd08287 242 LEC--V---G-TQ---ESMEQAIAIARPGGRVGYV 267 (345)
T ss_pred EEC--C---C-CH---HHHHHHHHhhccCCEEEEe
Confidence 753 1 1 12 5778889999999988765
No 486
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=73.78 E-value=23 Score=23.53 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=24.8
Q ss_pred cCCCcEEEeCCCc-cHH-HHHHHHhCCCcEEEEeCChHHH
Q 030565 7 IERRRCIELGSGT-GAL-AIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~-~~~l~~~~~~~v~~~D~s~~~l 44 (175)
.++++|+=+|||. |.. +..+++..+.+|+.+|.++...
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~ 56 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKA 56 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHH
Confidence 4578899999973 322 2334333236799999988665
No 487
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=73.69 E-value=8.4 Score=30.55 Aligned_cols=34 Identities=12% Similarity=0.302 Sum_probs=24.0
Q ss_pred cEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHH
Q 030565 11 RCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 11 ~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
+|-=+|+|. |..+-.+....|.+|+++|++++-+
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV 36 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKV 36 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHH
Confidence 455678875 6655443344488999999999876
No 488
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=73.45 E-value=11 Score=29.16 Aligned_cols=98 Identities=16% Similarity=0.098 Sum_probs=57.1
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeec--cCCCCC-CCCCCCcc
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH--SWGDAF-PIPNPDWD 80 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~fD 80 (175)
..++.+||=+|+|. |..+..+++..|. .|+++|.+++.+ +.++. . +....+..... ++.+.. ....+.+|
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~-~~~~~-l---Ga~~~i~~~~~~~~~~~~v~~~~~~g~d 258 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKF-ELAKK-F---GATDCVNPKDHDKPIQQVLVEMTDGGVD 258 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHH-c---CCCEEEcccccchHHHHHHHHHhCCCCc
Confidence 44678888889874 8888888888888 699999998775 44332 1 11000000000 000000 11123688
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCC-Cceeec
Q 030565 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pg-G~~~~~ 117 (175)
+|+-.-- .+ ..+.+..+.++++ |+++..
T Consensus 259 ~vid~~g------~~---~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 259 YTFECIG------NV---KVMRAALEACHKGWGTSVII 287 (368)
T ss_pred EEEECCC------Ch---HHHHHHHHhhccCCCeEEEE
Confidence 8876311 11 5667788889887 887765
No 489
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=73.13 E-value=18 Score=29.50 Aligned_cols=89 Identities=11% Similarity=0.080 Sum_probs=45.5
Q ss_pred EEEeCCCc--cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCC--CCccEEEeCC
Q 030565 12 CIELGSGT--GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPN--PDWDLILASD 86 (175)
Q Consensus 12 vLDlGcG~--G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~fD~i~~~~ 86 (175)
|-=||.|. +.++..+++. |.+|++.|.+++.+++..+.. ...+. .+. ..+.+. +.. ...|+|+..
T Consensus 4 IgvIGLG~MG~~lA~nL~~~-G~~V~v~dr~~~~~~~l~~~~-~~~g~--~i~-----~~~s~~e~v~~l~~~d~Iil~- 73 (470)
T PTZ00142 4 IGLIGLAVMGQNLALNIASR-GFKISVYNRTYEKTEEFVKKA-KEGNT--RVK-----GYHTLEELVNSLKKPRKVILL- 73 (470)
T ss_pred EEEEeEhHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhh-hhcCC--cce-----ecCCHHHHHhcCCCCCEEEEE-
Confidence 44456664 3334455444 789999999998763332221 11121 000 001111 111 135766553
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCce
Q 030565 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQ 114 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~ 114 (175)
+ ........+++++...|+||-.+
T Consensus 74 -v---~~~~~v~~vi~~l~~~L~~g~iI 97 (470)
T PTZ00142 74 -I---KAGEAVDETIDNLLPLLEKGDII 97 (470)
T ss_pred -e---CChHHHHHHHHHHHhhCCCCCEE
Confidence 1 33445568888888888887543
No 490
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=73.13 E-value=1.3 Score=27.29 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=10.3
Q ss_pred EEEeCCCccHHHH
Q 030565 12 CIELGSGTGALAI 24 (175)
Q Consensus 12 vLDlGcG~G~~~~ 24 (175)
=+|||||.|...-
T Consensus 6 NIDIGcG~GNTmd 18 (124)
T PF07101_consen 6 NIDIGCGAGNTMD 18 (124)
T ss_pred ccccccCCCcchh
Confidence 4799999997553
No 491
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=73.12 E-value=24 Score=26.21 Aligned_cols=97 Identities=12% Similarity=0.081 Sum_probs=53.7
Q ss_pred cCCCcEEEeCCC-ccHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-C-CCCCCccEE
Q 030565 7 IERRRCIELGSG-TGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-P-IPNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG-~G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~fD~i 82 (175)
.++.+||=.|+| .|..+..+|+..+.+ |+++.-+++.. +.++ .. +....+......+...+ . .....+|++
T Consensus 128 ~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~-~~~~-~~---g~~~~~~~~~~~~~~~l~~~~~~~~vd~v 202 (312)
T cd08269 128 RAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARL-ALAR-EL---GATEVVTDDSEAIVERVRELTGGAGADVV 202 (312)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHH-Hh---CCceEecCCCcCHHHHHHHHcCCCCCCEE
Confidence 356777777765 377777788888888 99988877554 3222 11 11000000000000000 0 122358888
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-... .. ..+....++++++|+++..
T Consensus 203 ld~~g------~~---~~~~~~~~~l~~~g~~~~~ 228 (312)
T cd08269 203 IEAVG------HQ---WPLDLAGELVAERGRLVIF 228 (312)
T ss_pred EECCC------CH---HHHHHHHHHhccCCEEEEE
Confidence 86421 11 4567788899999988765
No 492
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=72.91 E-value=3.1 Score=31.04 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=29.8
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCCh
Q 030565 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYND 41 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~ 41 (175)
..+++.+.||=+|||..+..+.++ +..|++-|+..
T Consensus 25 ~~s~k~f~DiFaGtGVV~~~fkk~-~n~iiaNDle~ 59 (330)
T COG3392 25 DLSGKIFCDIFAGTGVVGRFFKKA-GNKIIANDLEY 59 (330)
T ss_pred ccCCCeeeeeccCccHHHHHHHHh-cchhhhchHHH
Confidence 446788999999999999999776 88899999854
No 493
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=72.82 E-value=26 Score=25.36 Aligned_cols=77 Identities=13% Similarity=0.149 Sum_probs=42.2
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---------C
Q 030565 7 IERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---------I 74 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 74 (175)
++++++|=.|+ +|.++..+++.+ |.+|+.++.+++.+. .........+. .+..+..+..+... .
T Consensus 9 ~~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 9 LAGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLE-AAVAALRAAGG--AAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHH-HHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHH
Confidence 46888888885 444454444432 789999999887653 33333333222 23344445443211 0
Q ss_pred CCCCccEEEeCCc
Q 030565 75 PNPDWDLILASDI 87 (175)
Q Consensus 75 ~~~~fD~i~~~~~ 87 (175)
.-+..|.++.+..
T Consensus 85 ~~~~id~vi~~ag 97 (256)
T PRK06124 85 EHGRLDILVNNVG 97 (256)
T ss_pred hcCCCCEEEECCC
Confidence 1235788876544
No 494
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=72.53 E-value=14 Score=27.34 Aligned_cols=97 Identities=11% Similarity=0.148 Sum_probs=55.3
Q ss_pred ccCCCcEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC-CC-CCCCCccE
Q 030565 6 WIERRRCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FP-IPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~fD~ 81 (175)
..++.+||=.|+ | .|..+..+++..+.+|++++.++... +.++. .+....+.....+.... .. .....+|+
T Consensus 134 ~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~-~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 208 (320)
T cd05286 134 VKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKA-ELARA----AGADHVINYRDEDFVERVREITGGRGVDV 208 (320)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHH-HHHHH----CCCCEEEeCCchhHHHHHHHHcCCCCeeE
Confidence 345778888884 3 58888888888899999999887664 33322 11200000000000000 01 12336898
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030565 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++.. . .. ..+....++++++|+++..
T Consensus 209 vl~~--~---~~-----~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 209 VYDG--V---GK-----DTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred EEEC--C---Cc-----HhHHHHHHhhccCcEEEEE
Confidence 8853 2 11 3456678889999987765
No 495
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=72.20 E-value=8.2 Score=29.16 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=28.8
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHH
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
.+.+++|+=+|.|. |......++..+.+|+.+|.++...
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~ 187 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADL 187 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 34688999999985 5555555455588999999988653
No 496
>PRK05650 short chain dehydrogenase; Provisional
Probab=71.98 E-value=36 Score=24.91 Aligned_cols=74 Identities=14% Similarity=0.074 Sum_probs=37.7
Q ss_pred cEEEeCCCccHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC---------CCCC
Q 030565 11 RCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---------PNPD 78 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 78 (175)
+||=.|+ +|.++..+++.+ +.+|+.++.++..+++..+ .....+. ....+..+..+.... ..+.
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~-~l~~~~~--~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 77 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLK-LLREAGG--DGFYQRCDVRDYSQLTALAQACEEKWGG 77 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4665564 455555444433 7889999998866533322 2222121 223344444332110 1246
Q ss_pred ccEEEeCCcc
Q 030565 79 WDLILASDIL 88 (175)
Q Consensus 79 fD~i~~~~~l 88 (175)
+|+++.+...
T Consensus 78 id~lI~~ag~ 87 (270)
T PRK05650 78 IDVIVNNAGV 87 (270)
T ss_pred CCEEEECCCC
Confidence 8888876543
No 497
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=71.61 E-value=18 Score=26.20 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=24.1
Q ss_pred cCCCcEEEeCCCc-cHHH-HHHHHhCCCcEEEEeCCh
Q 030565 7 IERRRCIELGSGT-GALA-IFLRKAMNLDITTSDYND 41 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~-~~l~~~~~~~v~~~D~s~ 41 (175)
+.+++|+=+|||. |... ..|+..+-.+++.+|.+.
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4578999999984 6655 446555445688887654
No 498
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.55 E-value=15 Score=29.57 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=27.2
Q ss_pred cCCCcEEEeCCC-ccHHHHHHHHhCCCcEEEEeCChHH
Q 030565 7 IERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQE 43 (175)
Q Consensus 7 ~~~~~vLDlGcG-~G~~~~~l~~~~~~~v~~~D~s~~~ 43 (175)
+++++|+=+|.| +|..+..++...|..|+++|..+..
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~ 44 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPAS 44 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhh
Confidence 457888888887 5665555556668999999977654
No 499
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=71.24 E-value=13 Score=28.85 Aligned_cols=98 Identities=11% Similarity=0.053 Sum_probs=56.1
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeec--cCCCCC-CCCCCCcc
Q 030565 6 WIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH--SWGDAF-PIPNPDWD 80 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~fD 80 (175)
..+|.+||=.|+|. |..+..+++..+. +|+++|.+++.. +.++.. +....+..... .+.+.. ....+.+|
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~-~~~~~~----Ga~~~i~~~~~~~~~~~~v~~~~~~~~d 259 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKF-EQAKKF----GVTEFVNPKDHDKPVQEVIAEMTGGGVD 259 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHHc----CCceEEcccccchhHHHHHHHHhCCCCC
Confidence 44678888889874 7777888888887 799999988765 444321 11000000000 000000 11122578
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCC-Cceeec
Q 030565 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pg-G~~~~~ 117 (175)
+++-.-- .. ..+....+.++++ |++++.
T Consensus 260 ~vid~~G------~~---~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 260 YSFECTG------NI---DAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred EEEECCC------Ch---HHHHHHHHHhhcCCCEEEEE
Confidence 8875321 11 4666778888996 877765
No 500
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.21 E-value=15 Score=27.94 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=32.4
Q ss_pred cccCCCcEEEeCCCccH---HHHHHHHhCCCcEEEEeCChHHHHHHHHH
Q 030565 5 EWIERRRCIELGSGTGA---LAIFLRKAMNLDITTSDYNDQEIEDNIAY 50 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~---~~~~l~~~~~~~v~~~D~s~~~l~~~~~~ 50 (175)
...+|+.||==|+|+|. +++.+|++ ++.+..+|++.+..++..+.
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~r-g~~~vl~Din~~~~~etv~~ 81 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKR-GAKLVLWDINKQGNEETVKE 81 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHh-CCeEEEEeccccchHHHHHH
Confidence 34578888888888764 34667666 77999999999876444443
Done!