Citrus Sinensis ID: 030566
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 175 | 2.2.26 [Sep-21-2011] | |||||||
| Q54NK8 | 285 | GPN-loop GTPase 3 homolog | yes | no | 0.788 | 0.484 | 0.585 | 2e-47 | |
| Q6ZM63 | 285 | GPN-loop GTPase 3 OS=Dani | yes | no | 0.811 | 0.498 | 0.575 | 4e-47 | |
| Q4V7Z0 | 285 | GPN-loop GTPase 3 OS=Xeno | N/A | no | 0.811 | 0.498 | 0.595 | 7e-47 | |
| Q9D3W4 | 284 | GPN-loop GTPase 3 OS=Mus | yes | no | 0.811 | 0.5 | 0.575 | 6e-46 | |
| Q6R518 | 284 | GPN-loop GTPase 3 OS=Ratt | yes | no | 0.811 | 0.5 | 0.575 | 7e-46 | |
| Q28I42 | 285 | GPN-loop GTPase 3 OS=Xeno | yes | no | 0.811 | 0.498 | 0.582 | 1e-45 | |
| Q6FSS0 | 271 | GPN-loop GTPase 3 homolog | yes | no | 0.788 | 0.509 | 0.624 | 6e-45 | |
| Q6CQA6 | 271 | GPN-loop GTPase 3 homolog | yes | no | 0.788 | 0.509 | 0.609 | 7e-45 | |
| Q0P5E2 | 284 | GPN-loop GTPase 3 OS=Bos | yes | no | 0.811 | 0.5 | 0.561 | 7e-45 | |
| P0CN94 | 287 | GPN-loop GTPase 3 homolog | yes | no | 0.8 | 0.487 | 0.622 | 9e-45 |
| >sp|Q54NK8|GPN3_DICDI GPN-loop GTPase 3 homolog OS=Dictyostelium discoideum GN=gpn3 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 187 bits (476), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 82/140 (58%), Positives = 120/140 (85%), Gaps = 2/140 (1%)
Query: 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
+ QLV+GPAGSGKSTYC ++ ++CE ++R++HIVNLDPAAE F+YPV++DI+ L+++++V
Sbjct: 4 HVQLVMGPAGSGKSTYCDTMRKYCEEIKRSVHIVNLDPAAEVFEYPVSVDIKNLVTVDEV 63
Query: 63 MEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122
M+EL GPNGGL+Y ME+L +N+ DWL +EL +Y +DDYL+ DCPGQIEL++H+PV+R
Sbjct: 64 MDELHYGPNGGLVYAMEYLIENM-DWLTDELGDY-EDDYLIIDCPGQIELYSHIPVMRIL 121
Query: 123 VDHLKSRNFNVCAVYLLDSQ 142
VDHL+ ++VC+V+L+DSQ
Sbjct: 122 VDHLQQIGYSVCSVFLVDSQ 141
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q6ZM63|GPN3_DANRE GPN-loop GTPase 3 OS=Danio rerio GN=gpn3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 187 bits (474), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/146 (57%), Positives = 115/146 (78%), Gaps = 4/146 (2%)
Query: 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
YAQLV+GPAGSGKSTYC+++ HC+ + R++ +VNLDPAAE+F+YPV DIRELI ++DV
Sbjct: 4 YAQLVMGPAGSGKSTYCATMLEHCQALNRSVQVVNLDPAAEHFEYPVIADIRELIQVDDV 63
Query: 63 MEE--LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
ME+ L GPNGGLI+CME+ +N DWL E L +++DDY++FDCPGQIEL+TH+PV++
Sbjct: 64 MEDDSLRFGPNGGLIFCMEYFSNNF-DWLEESL-GHVEDDYILFDCPGQIELYTHLPVMK 121
Query: 121 NFVDHLKSRNFNVCAVYLLDSQVCIR 146
V+ L+ F VC V+L+DSQ +
Sbjct: 122 QLVEQLQQWEFRVCGVFLVDSQFMVE 147
|
Danio rerio (taxid: 7955) |
| >sp|Q4V7Z0|GPN3_XENLA GPN-loop GTPase 3 OS=Xenopus laevis GN=gpn3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (472), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 87/146 (59%), Positives = 115/146 (78%), Gaps = 4/146 (2%)
Query: 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
YAQLV+GPAGSGKSTYCS++ +HCET+ R++ +VNLDPAAE+FDYPV DIRELI ++DV
Sbjct: 4 YAQLVMGPAGSGKSTYCSTMVQHCETLNRSVQVVNLDPAAEHFDYPVLADIRELIEVDDV 63
Query: 63 MEE--LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
ME+ L GPNGGL+YCME+ +N DWL L + +DDY++FDCPGQIEL+TH+PV++
Sbjct: 64 MEDRSLRFGPNGGLVYCMEYFANNF-DWLESCL-GHTEDDYILFDCPGQIELYTHLPVMK 121
Query: 121 NFVDHLKSRNFNVCAVYLLDSQVCIR 146
V+ L+ F VC V+L+DSQ +
Sbjct: 122 YLVEQLQQWEFRVCGVFLVDSQFMVE 147
|
Xenopus laevis (taxid: 8355) |
| >sp|Q9D3W4|GPN3_MOUSE GPN-loop GTPase 3 OS=Mus musculus GN=Gpn3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (464), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 84/146 (57%), Positives = 114/146 (78%), Gaps = 4/146 (2%)
Query: 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
YAQLV+GPAGSGKSTYCS++ +HCE + R++ +VNLDPAAE+F+YPV DIRELI ++DV
Sbjct: 4 YAQLVMGPAGSGKSTYCSTMVQHCEALNRSVQVVNLDPAAEHFNYPVMADIRELIEVDDV 63
Query: 63 MEE--LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
ME+ L GPNGGL++CME+ +N DWL L +++DDY++FDCPGQIEL+TH+PV++
Sbjct: 64 MEDESLRFGPNGGLVFCMEYFANNF-DWLENCL-GHVEDDYILFDCPGQIELYTHLPVMK 121
Query: 121 NFVDHLKSRNFNVCAVYLLDSQVCIR 146
V L+ F VC V+L+DSQ +
Sbjct: 122 QLVQQLEQWEFRVCGVFLVDSQFMVE 147
|
Mus musculus (taxid: 10090) |
| >sp|Q6R518|GPN3_RAT GPN-loop GTPase 3 OS=Rattus norvegicus GN=Gpn3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (463), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 84/146 (57%), Positives = 114/146 (78%), Gaps = 4/146 (2%)
Query: 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
YAQLV+GPAGSGKSTYCS++ +HCE + R++ +VNLDPAAE+F+YPV DIRELI ++DV
Sbjct: 4 YAQLVMGPAGSGKSTYCSTMVQHCEALNRSVQVVNLDPAAEHFNYPVMADIRELIEVDDV 63
Query: 63 MEE--LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
ME+ L GPNGGL++CME+ +N DWL L +++DDY++FDCPGQIEL+TH+PV++
Sbjct: 64 MEDDSLRFGPNGGLVFCMEYFANNF-DWLENCL-GHVEDDYILFDCPGQIELYTHLPVMK 121
Query: 121 NFVDHLKSRNFNVCAVYLLDSQVCIR 146
V L+ F VC V+L+DSQ +
Sbjct: 122 QLVQQLEQWEFRVCGVFLVDSQFMVE 147
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q28I42|GPN3_XENTR GPN-loop GTPase 3 OS=Xenopus tropicalis GN=gpn3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (461), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/146 (58%), Positives = 114/146 (78%), Gaps = 4/146 (2%)
Query: 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
YAQLV+GPAGSGKSTYCS++ +HC ++ R++ +VNLDPAAE+FDYPV DIRELI ++DV
Sbjct: 4 YAQLVMGPAGSGKSTYCSTMVQHCGSLNRSVQVVNLDPAAEHFDYPVLADIRELIEVDDV 63
Query: 63 MEE--LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
ME+ L GPNGGL+YCME+ +N DWL L + +DDY++FDCPGQIEL+TH+PV++
Sbjct: 64 MEDRSLRFGPNGGLVYCMEYFANNF-DWLESCL-GHTEDDYILFDCPGQIELYTHLPVMK 121
Query: 121 NFVDHLKSRNFNVCAVYLLDSQVCIR 146
V+ L+ F VC V+L+DSQ +
Sbjct: 122 YLVEQLQQWEFRVCGVFLVDSQFMVE 147
|
Xenopus tropicalis (taxid: 8364) |
| >sp|Q6FSS0|GPN3_CANGA GPN-loop GTPase 3 homolog CAGL0G08294g OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CAGL0G08294g PE=3 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (455), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 88/141 (62%), Positives = 111/141 (78%), Gaps = 3/141 (2%)
Query: 6 LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
LV+GPAG+GKST+C+S+ H +T+ R HIVNLDPAAE Y +DIR+LISL+DVMEE
Sbjct: 7 LVLGPAGAGKSTFCNSIISHMQTIGRRAHIVNLDPAAEPSKYEFTIDIRDLISLDDVMEE 66
Query: 66 LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125
L LGPNG LIYC E+L NL DWL EE+ +Y +D+YL+FDCPGQIEL+TH+PVL N V H
Sbjct: 67 LDLGPNGALIYCFEYLMKNL-DWLDEEIGDY-NDEYLIFDCPGQIELYTHIPVLPNIVRH 124
Query: 126 LKSR-NFNVCAVYLLDSQVCI 145
L+ + NFN+CA YLL++ I
Sbjct: 125 LQGQLNFNLCATYLLEAPFVI 145
|
Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593) |
| >sp|Q6CQA6|GPN3_KLULA GPN-loop GTPase 3 homolog KLLA0D18557g OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=KLLA0D18557g PE=3 SV=2 | Back alignment and function description |
|---|
Score = 179 bits (455), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 86/141 (60%), Positives = 112/141 (79%), Gaps = 3/141 (2%)
Query: 6 LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
LV+GPAG+GKST+C+++ H +++ R HIVNLDPAAE Y +DIR+LISLEDVMEE
Sbjct: 7 LVLGPAGAGKSTFCNAIISHMQSIGRRAHIVNLDPAAEATKYEFTIDIRDLISLEDVMEE 66
Query: 66 LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125
GLGPNG LIYC E+L +NL DWL EE+ +Y +D+YL+FDCPGQIEL+TH+PVL V H
Sbjct: 67 FGLGPNGSLIYCFEYLLNNL-DWLDEEIGDY-NDEYLIFDCPGQIELYTHIPVLPTIVRH 124
Query: 126 LKSR-NFNVCAVYLLDSQVCI 145
L+++ NFN+CA YLL++ I
Sbjct: 125 LQNQLNFNLCATYLLEAPFVI 145
|
Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590) |
| >sp|Q0P5E2|GPN3_BOVIN GPN-loop GTPase 3 OS=Bos taurus GN=GPN3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 113/146 (77%), Gaps = 4/146 (2%)
Query: 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
YAQLV+GPAGSGKSTYC+++ +HCE + R++ +VNLDPAAE+F+Y V DIRELI ++DV
Sbjct: 4 YAQLVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMADIRELIEVDDV 63
Query: 63 MEE--LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
ME+ L GPNGGL++CME+ +N DWL L +++DDY++FDCPGQIEL+TH+PV++
Sbjct: 64 MEDSTLQFGPNGGLVFCMEYFANNF-DWLENCL-GHVEDDYILFDCPGQIELYTHLPVMK 121
Query: 121 NFVDHLKSRNFNVCAVYLLDSQVCIR 146
V L+ F VC V+L+DSQ +
Sbjct: 122 QLVQQLEQWEFRVCGVFLVDSQFMVE 147
|
Bos taurus (taxid: 9913) |
| >sp|P0CN94|GPN3_CRYNJ GPN-loop GTPase 3 homolog CNB04680 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CNB04680 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 89/143 (62%), Positives = 110/143 (76%), Gaps = 3/143 (2%)
Query: 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
M YA LV GPAG+GKST+C+SL H +T+ R++H+VNLDPAA+ F+Y +DIR+LI+LE
Sbjct: 1 MRYAVLVTGPAGAGKSTFCASLITHAQTIGRSVHLVNLDPAADKFEYEPTIDIRDLINLE 60
Query: 61 DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
DVMEEL GPNGGLIYC E+L +NL DWL +EL Y +DDYL+ DCPGQIEL+THVP+L
Sbjct: 61 DVMEELEFGPNGGLIYCFEYLLNNL-DWLEDELGAY-EDDYLIIDCPGQIELYTHVPLLP 118
Query: 121 NFVDHLK-SRNFNVCAVYLLDSQ 142
L S NF AVYL+DSQ
Sbjct: 119 RLATFLSTSLNFRTSAVYLIDSQ 141
|
Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 175 | ||||||
| 225468099 | 268 | PREDICTED: GPN-loop GTPase 3 homolog [Vi | 0.811 | 0.529 | 0.894 | 7e-73 | |
| 356526825 | 267 | PREDICTED: GPN-loop GTPase 3-like [Glyci | 0.931 | 0.610 | 0.781 | 1e-71 | |
| 388500596 | 267 | unknown [Lotus japonicus] | 0.811 | 0.531 | 0.873 | 1e-71 | |
| 255638486 | 267 | unknown [Glycine max] | 0.931 | 0.610 | 0.775 | 3e-71 | |
| 388493224 | 267 | unknown [Lotus japonicus] | 0.811 | 0.531 | 0.866 | 4e-71 | |
| 255567152 | 267 | XPA-binding protein, putative [Ricinus c | 0.811 | 0.531 | 0.880 | 5e-71 | |
| 218192785 | 237 | hypothetical protein OsI_11476 [Oryza sa | 0.811 | 0.599 | 0.880 | 8e-71 | |
| 357462187 | 267 | GPN-loop GTPase-like protein [Medicago t | 0.828 | 0.543 | 0.848 | 9e-71 | |
| 222624888 | 248 | hypothetical protein OsJ_10764 [Oryza sa | 0.811 | 0.572 | 0.880 | 1e-70 | |
| 212276092 | 266 | ATP binding protein isoform 1 [Zea mays] | 0.811 | 0.533 | 0.887 | 2e-70 |
| >gi|225468099|ref|XP_002266090.1| PREDICTED: GPN-loop GTPase 3 homolog [Vitis vinifera] gi|296088830|emb|CBI38288.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 278 bits (710), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 127/142 (89%), Positives = 140/142 (98%)
Query: 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
MG+AQLVIGPAGSGKSTYCSSLY+HCET+RRT+HIVNLDPAAE+FDYPVAMDIREL+SL+
Sbjct: 1 MGFAQLVIGPAGSGKSTYCSSLYQHCETMRRTIHIVNLDPAAESFDYPVAMDIRELVSLD 60
Query: 61 DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
DVMEELGLGPNGGL+YCMEHLE+NLDDWL +ELDNYLDDDYLVFDCPGQIELF+HVP+LR
Sbjct: 61 DVMEELGLGPNGGLMYCMEHLEENLDDWLTDELDNYLDDDYLVFDCPGQIELFSHVPMLR 120
Query: 121 NFVDHLKSRNFNVCAVYLLDSQ 142
NFVDHLK +NFNVCAVYLLDSQ
Sbjct: 121 NFVDHLKRKNFNVCAVYLLDSQ 142
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526825|ref|XP_003532017.1| PREDICTED: GPN-loop GTPase 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 129/165 (78%), Positives = 141/165 (85%), Gaps = 2/165 (1%)
Query: 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
MGYAQLVIGPAGSGKSTYCSSLY HC RR++H+VNLDPAAENFDYPVAMDIRELISL+
Sbjct: 1 MGYAQLVIGPAGSGKSTYCSSLYEHCVAARRSIHVVNLDPAAENFDYPVAMDIRELISLD 60
Query: 61 DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
DVMEELGLGPNGGL+YCMEHLEDNLDDWL EELDNYLDDDYLVFDCPGQIEL++HVPVL+
Sbjct: 61 DVMEELGLGPNGGLVYCMEHLEDNLDDWLTEELDNYLDDDYLVFDCPGQIELYSHVPVLK 120
Query: 121 NFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165
NFV+HLK +NF+VCAVYLLDSQ C C +VQ
Sbjct: 121 NFVEHLKRKNFSVCAVYLLDSQFMTDVTKFISG--CMACLSAMVQ 163
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388500596|gb|AFK38364.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 124/142 (87%), Positives = 138/142 (97%)
Query: 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
MGYAQLVIGPAGSGKSTYCSSL++HCET RRT+H+VNLDPAAENFDYPVAMD+RELISL+
Sbjct: 1 MGYAQLVIGPAGSGKSTYCSSLHQHCETTRRTIHVVNLDPAAENFDYPVAMDVRELISLD 60
Query: 61 DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
DVMEELGLGPNGGL+YCMEHLE+NLDDWL EELDNYLDDDYLVFDCPGQIEL++HVPVL+
Sbjct: 61 DVMEELGLGPNGGLVYCMEHLEENLDDWLDEELDNYLDDDYLVFDCPGQIELYSHVPVLK 120
Query: 121 NFVDHLKSRNFNVCAVYLLDSQ 142
NFV+HL+ +NFNVC VYLLDSQ
Sbjct: 121 NFVEHLQQKNFNVCVVYLLDSQ 142
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255638486|gb|ACU19552.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 128/165 (77%), Positives = 140/165 (84%), Gaps = 2/165 (1%)
Query: 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
MGYAQLVIGPAGSGKSTYCSSLY HC RR++H+VNLDPAAENFDYPVAMDIRELISL+
Sbjct: 1 MGYAQLVIGPAGSGKSTYCSSLYEHCVAARRSIHVVNLDPAAENFDYPVAMDIRELISLD 60
Query: 61 DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
DVMEELGLGPNGGL+YCMEHLEDNLDDWL EELDNYLDDDYLVFDCPGQIEL++H PVL+
Sbjct: 61 DVMEELGLGPNGGLVYCMEHLEDNLDDWLTEELDNYLDDDYLVFDCPGQIELYSHAPVLK 120
Query: 121 NFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165
NFV+HLK +NF+VCAVYLLDSQ C C +VQ
Sbjct: 121 NFVEHLKRKNFSVCAVYLLDSQFMTDVTKFISG--CMACLSAMVQ 163
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388493224|gb|AFK34678.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 272 bits (695), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 123/142 (86%), Positives = 137/142 (96%)
Query: 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
MGYAQLVIGPAGSGKSTYCSSL++HCET RRT+H+VNLDPAAENFDYPVAMD+RELISL+
Sbjct: 1 MGYAQLVIGPAGSGKSTYCSSLHQHCETTRRTIHVVNLDPAAENFDYPVAMDVRELISLD 60
Query: 61 DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
DVMEELGLGPNG L+YCMEHLE+NLDDWL EELDNYLDDDYLVFDCPGQIEL++HVPVL+
Sbjct: 61 DVMEELGLGPNGSLVYCMEHLEENLDDWLDEELDNYLDDDYLVFDCPGQIELYSHVPVLK 120
Query: 121 NFVDHLKSRNFNVCAVYLLDSQ 142
NFV+HL+ +NFNVC VYLLDSQ
Sbjct: 121 NFVEHLQQKNFNVCVVYLLDSQ 142
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255567152|ref|XP_002524557.1| XPA-binding protein, putative [Ricinus communis] gi|223536110|gb|EEF37765.1| XPA-binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 272 bits (695), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 125/142 (88%), Positives = 137/142 (96%)
Query: 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
MGYAQLVIGPAGSGKSTYCSSLY+HCETV R++HIVNLDPAAENFDYPV+MDIRELISL+
Sbjct: 1 MGYAQLVIGPAGSGKSTYCSSLYQHCETVGRSIHIVNLDPAAENFDYPVSMDIRELISLD 60
Query: 61 DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
DVMEELGLGPNG L+YCM+ LEDNLDDWL+EELDNY+DDDYLVFDCPGQIELF+HV VLR
Sbjct: 61 DVMEELGLGPNGALMYCMDELEDNLDDWLSEELDNYMDDDYLVFDCPGQIELFSHVSVLR 120
Query: 121 NFVDHLKSRNFNVCAVYLLDSQ 142
NFV+HLK +NFNVCAVYLLDSQ
Sbjct: 121 NFVEHLKRKNFNVCAVYLLDSQ 142
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218192785|gb|EEC75212.1| hypothetical protein OsI_11476 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 271 bits (693), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 125/142 (88%), Positives = 135/142 (95%)
Query: 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
MGYAQLVIGPAGSGKSTYCSSLY+HCETV RT+H+VNLDPAAE+F YPV+ DIRELISL+
Sbjct: 1 MGYAQLVIGPAGSGKSTYCSSLYQHCETVGRTIHMVNLDPAAEHFSYPVSTDIRELISLD 60
Query: 61 DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
DVMEELG+GPNGGLIYCMEHLEDNLDDWL E+LD YLDDDYLVFDCPGQIELFTHVPVLR
Sbjct: 61 DVMEELGMGPNGGLIYCMEHLEDNLDDWLDEQLDGYLDDDYLVFDCPGQIELFTHVPVLR 120
Query: 121 NFVDHLKSRNFNVCAVYLLDSQ 142
NFV+HLK +NFNVCAVY LDSQ
Sbjct: 121 NFVEHLKRKNFNVCAVYFLDSQ 142
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357462187|ref|XP_003601375.1| GPN-loop GTPase-like protein [Medicago truncatula] gi|355490423|gb|AES71626.1| GPN-loop GTPase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 271 bits (692), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 123/145 (84%), Positives = 138/145 (95%)
Query: 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
MGYAQLVIGPAGSGKSTYCSSLY+HCETVRR++H++NLDPAAENFDYPVAMD+RELISL+
Sbjct: 1 MGYAQLVIGPAGSGKSTYCSSLYQHCETVRRSIHVMNLDPAAENFDYPVAMDVRELISLD 60
Query: 61 DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
DVMEELGLGPNGGL+YCMEHLED+L+ WL EELDNYLDD+YLVFDCPGQIEL++HVPV R
Sbjct: 61 DVMEELGLGPNGGLVYCMEHLEDSLNGWLDEELDNYLDDEYLVFDCPGQIELYSHVPVFR 120
Query: 121 NFVDHLKSRNFNVCAVYLLDSQVCI 145
NFV+HLK RNFNVC VYLLDSQ +
Sbjct: 121 NFVEHLKRRNFNVCVVYLLDSQFMV 145
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222624888|gb|EEE59020.1| hypothetical protein OsJ_10764 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 125/142 (88%), Positives = 135/142 (95%)
Query: 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
MGYAQLVIGPAGSGKSTYCSSLY+HCETV RT+H+VNLDPAAE+F YPV+ DIRELISL+
Sbjct: 1 MGYAQLVIGPAGSGKSTYCSSLYQHCETVGRTIHMVNLDPAAEHFSYPVSTDIRELISLD 60
Query: 61 DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
DVMEELG+GPNGGLIYCMEHLEDNLDDWL E+LD YLDDDYLVFDCPGQIELFTHVPVLR
Sbjct: 61 DVMEELGMGPNGGLIYCMEHLEDNLDDWLDEQLDGYLDDDYLVFDCPGQIELFTHVPVLR 120
Query: 121 NFVDHLKSRNFNVCAVYLLDSQ 142
NFV+HLK +NFNVCAVY LDSQ
Sbjct: 121 NFVEHLKRKNFNVCAVYFLDSQ 142
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|212276092|ref|NP_001130263.1| ATP binding protein isoform 1 [Zea mays] gi|194688694|gb|ACF78431.1| unknown [Zea mays] gi|195640422|gb|ACG39679.1| ATP binding protein [Zea mays] gi|413933260|gb|AFW67811.1| ATP binding protein isoform 1 [Zea mays] gi|413933261|gb|AFW67812.1| ATP binding protein isoform 2 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 270 bits (689), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 126/142 (88%), Positives = 136/142 (95%)
Query: 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
MGYAQLVIGPAGSGKSTYCSSLY HC+TV RT+HIVNLDPAAE+FDYPV MDIRELISL+
Sbjct: 1 MGYAQLVIGPAGSGKSTYCSSLYDHCQTVGRTIHIVNLDPAAEHFDYPVDMDIRELISLD 60
Query: 61 DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
DVMEE+GLGPNGGLIYCMEHLED+LDDW E+L+NYLDDDYLVFDCPGQIELFTHVPVLR
Sbjct: 61 DVMEEIGLGPNGGLIYCMEHLEDSLDDWFDEQLENYLDDDYLVFDCPGQIELFTHVPVLR 120
Query: 121 NFVDHLKSRNFNVCAVYLLDSQ 142
NFV+HLK +NFNVCAVYLLDSQ
Sbjct: 121 NFVEHLKRKNFNVCAVYLLDSQ 142
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 175 | ||||||
| TAIR|locus:2135793 | 271 | AT4G12790 [Arabidopsis thalian | 0.811 | 0.523 | 0.767 | 1.4e-57 | |
| DICTYBASE|DDB_G0285197 | 285 | gpn3 "GPN-loop GTPase 3" [Dict | 0.8 | 0.491 | 0.531 | 2.6e-40 | |
| MGI|MGI:1289326 | 284 | Gpn3 "GPN-loop GTPase 3" [Mus | 0.805 | 0.496 | 0.544 | 4.2e-40 | |
| RGD|1303034 | 284 | Gpn3 "GPN-loop GTPase 3" [Ratt | 0.805 | 0.496 | 0.544 | 4.2e-40 | |
| ZFIN|ZDB-GENE-040724-141 | 285 | gpn3 "GPN-loop GTPase 3" [Dani | 0.805 | 0.494 | 0.537 | 4.2e-40 | |
| WB|WBGene00013550 | 272 | Y75B8A.14 [Caenorhabditis eleg | 0.794 | 0.511 | 0.566 | 1.8e-39 | |
| UNIPROTKB|Q9XW68 | 272 | Y75B8A.14 "Protein Y75B8A.14" | 0.794 | 0.511 | 0.566 | 1.8e-39 | |
| UNIPROTKB|E1C8Z1 | 284 | GPN3 "Uncharacterized protein" | 0.805 | 0.496 | 0.537 | 3.7e-39 | |
| UNIPROTKB|Q0P5E2 | 284 | GPN3 "GPN-loop GTPase 3" [Bos | 0.805 | 0.496 | 0.531 | 6.1e-39 | |
| UNIPROTKB|F1P8E5 | 284 | GPN3 "Uncharacterized protein" | 0.805 | 0.496 | 0.531 | 6.1e-39 |
| TAIR|locus:2135793 AT4G12790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 109/142 (76%), Positives = 120/142 (84%)
Query: 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
MGYAQLVIGPAGSGKSTYCSSLY HCET+ RTMH+VNLDPAAE F+YPVAMDIRELISLE
Sbjct: 1 MGYAQLVIGPAGSGKSTYCSSLYEHCETIGRTMHVVNLDPAAEIFNYPVAMDIRELISLE 60
Query: 61 DVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLR 120
DVME+L LGPNG L+YCME+LED+L DW +FDCPGQIELFTHVPVL+
Sbjct: 61 DVMEDLKLGPNGALMYCMEYLEDSLHDWVDEELENYRDDDYLIFDCPGQIELFTHVPVLK 120
Query: 121 NFVDHLKSRNFNVCAVYLLDSQ 142
NFV+HLK +NFNVC VYLLDSQ
Sbjct: 121 NFVEHLKQKNFNVCVVYLLDSQ 142
|
|
| DICTYBASE|DDB_G0285197 gpn3 "GPN-loop GTPase 3" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 76/143 (53%), Positives = 111/143 (77%)
Query: 1 MG-YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISL 59
MG + QLV+GPAGSGKSTYC ++ ++CE ++R++HIVNLDPAAE F+YPV++DI+ L+++
Sbjct: 1 MGKHVQLVMGPAGSGKSTYCDTMRKYCEEIKRSVHIVNLDPAAEVFEYPVSVDIKNLVTV 60
Query: 60 EDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVL 119
++VM+EL GPNGGL+Y ME+L +N+D W + DCPGQIEL++H+PV+
Sbjct: 61 DEVMDELHYGPNGGLVYAMEYLIENMD-WLTDELGDYEDDYL-IIDCPGQIELYSHIPVM 118
Query: 120 RNFVDHLKSRNFNVCAVYLLDSQ 142
R VDHL+ ++VC+V+L+DSQ
Sbjct: 119 RILVDHLQQIGYSVCSVFLVDSQ 141
|
|
| MGI|MGI:1289326 Gpn3 "GPN-loop GTPase 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 79/145 (54%), Positives = 105/145 (72%)
Query: 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
YAQLV+GPAGSGKSTYCS++ +HCE + R++ +VNLDPAAE+F+YPV DIRELI ++DV
Sbjct: 4 YAQLVMGPAGSGKSTYCSTMVQHCEALNRSVQVVNLDPAAEHFNYPVMADIRELIEVDDV 63
Query: 63 MEE--LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLR 120
ME+ L GPNGGL++CME+ +N D W +FDCPGQIEL+TH+PV++
Sbjct: 64 MEDESLRFGPNGGLVFCMEYFANNFD-WLENCLGHVEDDYI-LFDCPGQIELYTHLPVMK 121
Query: 121 NFVDHLKSRNFNVCAVYLLDSQVCI 145
V L+ F VC V+L+DSQ +
Sbjct: 122 QLVQQLEQWEFRVCGVFLVDSQFMV 146
|
|
| RGD|1303034 Gpn3 "GPN-loop GTPase 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 79/145 (54%), Positives = 105/145 (72%)
Query: 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
YAQLV+GPAGSGKSTYCS++ +HCE + R++ +VNLDPAAE+F+YPV DIRELI ++DV
Sbjct: 4 YAQLVMGPAGSGKSTYCSTMVQHCEALNRSVQVVNLDPAAEHFNYPVMADIRELIEVDDV 63
Query: 63 MEE--LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLR 120
ME+ L GPNGGL++CME+ +N D W +FDCPGQIEL+TH+PV++
Sbjct: 64 MEDDSLRFGPNGGLVFCMEYFANNFD-WLENCLGHVEDDYI-LFDCPGQIELYTHLPVMK 121
Query: 121 NFVDHLKSRNFNVCAVYLLDSQVCI 145
V L+ F VC V+L+DSQ +
Sbjct: 122 QLVQQLEQWEFRVCGVFLVDSQFMV 146
|
|
| ZFIN|ZDB-GENE-040724-141 gpn3 "GPN-loop GTPase 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 78/145 (53%), Positives = 105/145 (72%)
Query: 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
YAQLV+GPAGSGKSTYC+++ HC+ + R++ +VNLDPAAE+F+YPV DIRELI ++DV
Sbjct: 4 YAQLVMGPAGSGKSTYCATMLEHCQALNRSVQVVNLDPAAEHFEYPVIADIRELIQVDDV 63
Query: 63 MEE--LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLR 120
ME+ L GPNGGLI+CME+ +N D W +FDCPGQIEL+TH+PV++
Sbjct: 64 MEDDSLRFGPNGGLIFCMEYFSNNFD-WLEESLGHVEDDYI-LFDCPGQIELYTHLPVMK 121
Query: 121 NFVDHLKSRNFNVCAVYLLDSQVCI 145
V+ L+ F VC V+L+DSQ +
Sbjct: 122 QLVEQLQQWEFRVCGVFLVDSQFMV 146
|
|
| WB|WBGene00013550 Y75B8A.14 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 81/143 (56%), Positives = 104/143 (72%)
Query: 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
M YAQLV+GPAGSGKSTYCS +Y HC + RT+ +VNLDPA E F+YP +D+R+LIS+
Sbjct: 1 MKYAQLVMGPAGSGKSTYCSVMYNHCLSTGRTLRMVNLDPACEVFNYPAVVDVRDLISVN 60
Query: 61 DVME--ELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPV 118
DV E EL LGPNG L++CME+L NL+ W V DCPGQIEL++H+PV
Sbjct: 61 DVQEDEELILGPNGALVFCMEYLVQNLE-WLHDELDEGEDDYF-VIDCPGQIELYSHLPV 118
Query: 119 LRNFVDHLKSRNFNVCAVYLLDS 141
+R VD LKS +FNVC+V+L+D+
Sbjct: 119 MRQIVDALKSWDFNVCSVFLIDT 141
|
|
| UNIPROTKB|Q9XW68 Y75B8A.14 "Protein Y75B8A.14" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 81/143 (56%), Positives = 104/143 (72%)
Query: 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
M YAQLV+GPAGSGKSTYCS +Y HC + RT+ +VNLDPA E F+YP +D+R+LIS+
Sbjct: 1 MKYAQLVMGPAGSGKSTYCSVMYNHCLSTGRTLRMVNLDPACEVFNYPAVVDVRDLISVN 60
Query: 61 DVME--ELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPV 118
DV E EL LGPNG L++CME+L NL+ W V DCPGQIEL++H+PV
Sbjct: 61 DVQEDEELILGPNGALVFCMEYLVQNLE-WLHDELDEGEDDYF-VIDCPGQIELYSHLPV 118
Query: 119 LRNFVDHLKSRNFNVCAVYLLDS 141
+R VD LKS +FNVC+V+L+D+
Sbjct: 119 MRQIVDALKSWDFNVCSVFLIDT 141
|
|
| UNIPROTKB|E1C8Z1 GPN3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
Identities = 78/145 (53%), Positives = 103/145 (71%)
Query: 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
YAQLV+GPAGSGKSTYCS++ +HCE + R + +VNLDPAAE F YPV DIRELI ++DV
Sbjct: 4 YAQLVMGPAGSGKSTYCSTMLQHCEALGRAVQVVNLDPAAEFFSYPVMADIRELIEVDDV 63
Query: 63 MEE--LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLR 120
ME+ L GPNGGL++CME+ +N + W +FDCPGQIEL+TH+PV++
Sbjct: 64 MEDDSLRFGPNGGLVFCMEYFANNFN-WLEESLGHVEDDYI-LFDCPGQIELYTHLPVMK 121
Query: 121 NFVDHLKSRNFNVCAVYLLDSQVCI 145
V+ L+ F VC V+L+DSQ +
Sbjct: 122 QLVEQLQQWEFRVCGVFLVDSQFMV 146
|
|
| UNIPROTKB|Q0P5E2 GPN3 "GPN-loop GTPase 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 77/145 (53%), Positives = 104/145 (71%)
Query: 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
YAQLV+GPAGSGKSTYC+++ +HCE + R++ +VNLDPAAE+F+Y V DIRELI ++DV
Sbjct: 4 YAQLVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMADIRELIEVDDV 63
Query: 63 MEE--LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLR 120
ME+ L GPNGGL++CME+ +N D W +FDCPGQIEL+TH+PV++
Sbjct: 64 MEDSTLQFGPNGGLVFCMEYFANNFD-WLENCLGHVEDDYI-LFDCPGQIELYTHLPVMK 121
Query: 121 NFVDHLKSRNFNVCAVYLLDSQVCI 145
V L+ F VC V+L+DSQ +
Sbjct: 122 QLVQQLEQWEFRVCGVFLVDSQFMV 146
|
|
| UNIPROTKB|F1P8E5 GPN3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 77/145 (53%), Positives = 104/145 (71%)
Query: 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
YAQLV+GPAGSGKSTYC+++ +HCE + R++ +VNLDPAAE+F+Y V DIRELI ++DV
Sbjct: 4 YAQLVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMADIRELIEVDDV 63
Query: 63 MEE--LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLR 120
ME+ L GPNGGL++CME+ +N D W +FDCPGQIEL+TH+PV++
Sbjct: 64 MEDDSLRFGPNGGLVFCMEYFANNFD-WLENCLGHVEDDYI-LFDCPGQIELYTHLPVMK 121
Query: 121 NFVDHLKSRNFNVCAVYLLDSQVCI 145
V L+ F VC V+L+DSQ +
Sbjct: 122 QLVQQLEQWEFRVCGVFLVDSQFMV 146
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 175 | |||
| pfam03029 | 235 | pfam03029, ATP_bind_1, Conserved hypothetical ATP | 1e-63 | |
| PRK13768 | 253 | PRK13768, PRK13768, GTPase; Provisional | 1e-37 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 7e-21 | |
| pfam13207 | 114 | pfam13207, AAA_17, AAA domain | 0.001 |
| >gnl|CDD|217326 pfam03029, ATP_bind_1, Conserved hypothetical ATP binding protein | Back alignment and domain information |
|---|
Score = 195 bits (498), Expect = 1e-63
Identities = 69/138 (50%), Positives = 94/138 (68%), Gaps = 4/138 (2%)
Query: 7 VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEEL 66
V+GPAGSGK+T+ +L + R++++VNLDPAAEN Y +DIRELI++ DVME+
Sbjct: 1 VVGPAGSGKTTFVGALSEILPLLGRSVYVVNLDPAAENLPYEADIDIRELITVADVMEDD 60
Query: 67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126
GLGPNG L M+ L L DWL EEL+ +DDY +FD PGQIELFTH L V+ L
Sbjct: 61 GLGPNGALTVAMDFLRITL-DWLLEELEY--EDDYYLFDTPGQIELFTHWESLARGVEAL 117
Query: 127 KSRNFNVCAVYLLDSQVC 144
++ + + AVYL+D++
Sbjct: 118 EA-SLRLGAVYLVDTRRL 134
|
Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity. Length = 235 |
| >gnl|CDD|237498 PRK13768, PRK13768, GTPase; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 1e-37
Identities = 51/135 (37%), Positives = 77/135 (57%), Gaps = 3/135 (2%)
Query: 7 VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEEL 66
+G AGSGK+T +L E + IVNLDPA E Y D+R+ ++ ++M++
Sbjct: 7 FLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKY 66
Query: 67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126
GLGPNG LI ++ L D+ + EE++ LD DY++ D PGQ+ELF R V+ L
Sbjct: 67 GLGPNGALIASVDLLLTKADE-IKEEIE-SLDADYVLVDTPGQMELFAFRESGRKLVERL 124
Query: 127 KSRNFNVCAVYLLDS 141
S + V+L+D+
Sbjct: 125 -SGSSKSVVVFLIDA 138
|
Length = 253 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.0 bits (210), Expect = 7e-21
Identities = 35/152 (23%), Positives = 53/152 (34%), Gaps = 15/152 (9%)
Query: 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYP-----VAMDIRELI 57
+ +V+G G GK+T + L I NLDPA Y D
Sbjct: 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65
Query: 58 SLEDVMEELGLGPNGGLIYC----MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELF 113
+ E G NG LI E ++ ++WL EEL DD + +I+LF
Sbjct: 66 EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWL-EELRELAPDDVPILLVGNKIDLF 124
Query: 114 THVPVLRNFVDHLKSRNFNVCAVYLLDSQVCI 145
++ L V L+ + +
Sbjct: 125 DEQSSSEEILNQLNR-----EVVLLVLAPKAV 151
|
Length = 219 |
| >gnl|CDD|221983 pfam13207, AAA_17, AAA domain | Back alignment and domain information |
|---|
Score = 36.5 bits (84), Expect = 0.001
Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 32/120 (26%)
Query: 6 LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
L+ GP GSGKST L AE PV ISL+D++ E
Sbjct: 3 LITGPPGSGKSTLAKKL-------------------AEKLGIPV-------ISLDDLLRE 36
Query: 66 LGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124
GL G + ++ + L++ L E L V D + L + V
Sbjct: 37 EGLAELDDGELDDIDIDLELLEEILDE-----LAKQEWVIDGVRESTLELRLEEADLVVF 91
|
Length = 114 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 175 | |||
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.98 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.98 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.98 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.97 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.97 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.97 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.97 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.97 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.97 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.97 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.97 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.97 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.97 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.97 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.97 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.97 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.97 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.97 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.97 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.97 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.97 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.97 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.97 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.97 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.97 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.97 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.97 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.97 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.97 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.97 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.97 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.97 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.97 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.97 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.97 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.97 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.97 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.97 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.97 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.97 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.97 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.97 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.97 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.97 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.97 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.97 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.97 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.97 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.97 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.97 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.97 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.97 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.97 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.97 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.97 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.97 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.97 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.97 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.97 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.97 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.97 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.97 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.97 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.97 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.97 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.97 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.97 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.97 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.97 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.97 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.97 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.97 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.97 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.97 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.97 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.97 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.97 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.97 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.97 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.97 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.97 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.97 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.97 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.97 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.96 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.96 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.96 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.96 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.96 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.96 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.96 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.96 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.96 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.96 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.96 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.96 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.96 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.96 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.96 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.96 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.96 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.96 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.96 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.96 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.96 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.96 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.96 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.96 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.96 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.96 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.96 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.96 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.96 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.96 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.96 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.96 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.96 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.96 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.96 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.96 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.96 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.96 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.96 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 99.96 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.96 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.96 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.96 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.96 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.96 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.96 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.96 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.96 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.96 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.96 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.96 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.96 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.96 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 99.96 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.96 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.96 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.96 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.96 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.96 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 99.96 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.96 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.96 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.96 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.96 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.96 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.96 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.96 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 99.96 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.96 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.96 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.96 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.95 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.95 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.95 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.95 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.95 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.95 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.95 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.95 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.95 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.95 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.95 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.95 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.95 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.95 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.95 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.95 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.95 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.95 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.95 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.95 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.95 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.95 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.95 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.95 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.95 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.95 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.95 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.95 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.95 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.95 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.95 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.95 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.95 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.95 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.95 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.95 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.95 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.95 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.95 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.95 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.95 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.95 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.95 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.95 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.95 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.95 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.95 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.95 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.95 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.94 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.94 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.94 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.94 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.94 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.94 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.94 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.94 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.94 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.94 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.94 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.94 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.94 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.94 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.94 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.94 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.94 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.94 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.94 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.94 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.94 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.94 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.93 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.93 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.93 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.93 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.93 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.93 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.93 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.93 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.93 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.93 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.93 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.93 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.93 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.93 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.93 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.93 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.93 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.92 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.92 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.92 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.92 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.92 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.92 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.92 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.92 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.92 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.92 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.92 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.92 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.92 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.92 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.92 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.92 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.92 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.92 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.92 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.91 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.91 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.91 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.91 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.91 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.91 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.91 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.91 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.91 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.91 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.9 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.9 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.9 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.9 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.9 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.89 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.89 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.89 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.89 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.89 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.89 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.88 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 99.88 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.88 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.88 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.88 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.88 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.88 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.88 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.87 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.87 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.86 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.86 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.86 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.86 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.86 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.86 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.86 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.85 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.85 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.85 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.85 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.85 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.84 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.83 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.82 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.82 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.81 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.81 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.81 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.8 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.8 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.79 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.79 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.77 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.76 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.74 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.74 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.73 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.73 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.73 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.72 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.72 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.72 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.71 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.7 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 99.69 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.67 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.64 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.64 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.64 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.63 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.63 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.63 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 99.62 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.62 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.62 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.61 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.59 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.59 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.59 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.56 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.55 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.54 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.54 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.54 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.54 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.53 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.51 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.5 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.44 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.41 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.34 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.32 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.29 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.27 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.27 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.26 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.26 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.23 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.22 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.2 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 99.19 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.18 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.17 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.14 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.13 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.13 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.12 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 99.11 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.1 | |
| PRK13768 | 253 | GTPase; Provisional | 99.08 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.05 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.04 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.03 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.97 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 98.96 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 98.96 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 98.94 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 98.93 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.9 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.89 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.89 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.81 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.78 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.76 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.75 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.74 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.73 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 98.73 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 98.72 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.71 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 98.7 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.68 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 98.67 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.66 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.65 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.65 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 98.58 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 98.56 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.56 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 98.55 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 98.55 | |
| PLN02318 | 656 | phosphoribulokinase/uridine kinase | 98.54 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.52 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.51 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.51 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.5 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 98.49 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.49 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 98.49 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 98.48 | |
| cd02026 | 273 | PRK Phosphoribulokinase (PRK) is an enzyme involve | 98.47 | |
| PRK13764 | 602 | ATPase; Provisional | 98.46 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.42 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 98.42 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.41 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 98.41 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 98.39 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.38 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.38 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 98.38 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.38 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.38 | |
| TIGR03498 | 418 | FliI_clade3 flagellar protein export ATPase FliI. | 98.37 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 98.37 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.35 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.35 | |
| PLN03046 | 460 | D-glycerate 3-kinase; Provisional | 98.35 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.34 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 98.34 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 98.33 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.32 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.32 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 98.31 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 98.31 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 98.3 | |
| PF06414 | 199 | Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e | 98.3 |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=233.16 Aligned_cols=161 Identities=19% Similarity=0.188 Sum_probs=126.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc-------cCCcchhcc--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV-------AMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~-------~~~~~~~~~-------- 58 (175)
+||+++|+||||||||||+|+|+|+++|.+|+|.++|+++.. +.++|.+ .+++.+.+.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 599999999999999999999999999999999999987532 1222222 222222221
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
...+++.+++.....+....-+..|+|+.|+|+++++ +|++++||||+...+..++..++++++++
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ--~~~iLLLDEPTs~LDi~~Q~evl~ll~~l 184 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQ--ETPILLLDEPTSHLDIAHQIEVLELLRDL 184 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhc--CCCEEEeCCCccccCHHHHHHHHHHHHHH
Confidence 2344666666554333332223349999999999999 99999999997777788888889999999
Q ss_pred H-hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 127 K-SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~-~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+ ++|.|| ++++||+..+..+||++++|..|..+.+++
T Consensus 185 ~~~~~~tv----v~vlHDlN~A~ryad~~i~lk~G~i~a~G~ 222 (258)
T COG1120 185 NREKGLTV----VMVLHDLNLAARYADHLILLKDGKIVAQGT 222 (258)
T ss_pred HHhcCCEE----EEEecCHHHHHHhCCEEEEEECCeEEeecC
Confidence 7 569999 999999999999999999999998887765
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=229.91 Aligned_cols=154 Identities=16% Similarity=0.198 Sum_probs=121.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----ccCCCCcc---------CCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDYPVA---------MDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----~~~~~~~~---------~~~~~~~~--------- 58 (175)
+|++++|+||||||||||+|+|+|+++|++|+|.+.|++... ..++|+|. .++++.+.
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 599999999999999999999999999999999999876432 23445442 23333332
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++.....+....-+-.|+||.+|||++++ +|++++||||....+......+.++|++++
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~--~p~lllLDEP~~gvD~~~~~~i~~lL~~l~ 186 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQ--NPDLLLLDEPFTGVDVAGQKEIYDLLKELR 186 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhcc--CCCEEEecCCcccCCHHHHHHHHHHHHHHH
Confidence 3456677777654333332223349999999999999 999999999966666667777888999999
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccc
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
++|+|| +++|||+..+.+++|+++++..+
T Consensus 187 ~eg~tI----l~vtHDL~~v~~~~D~vi~Ln~~ 215 (254)
T COG1121 187 QEGKTV----LMVTHDLGLVMAYFDRVICLNRH 215 (254)
T ss_pred HCCCEE----EEEeCCcHHhHhhCCEEEEEcCe
Confidence 889999 99999999999999999887654
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=221.74 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=123.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccccc-------------CCCCccCCcchhccH--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAEN-------------FDYPVAMDIRELISL-------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~-------------~~~~~~~~~~~~~~~-------- 59 (175)
+||++||+|||||||||++|+|++++.|++|+|+++|.+..++. .+++..++.++++.+
T Consensus 27 ~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~ 106 (245)
T COG4555 27 EGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLS 106 (245)
T ss_pred cceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhh
Confidence 59999999999999999999999999999999999998864422 223333455555442
Q ss_pred --------HHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC
Q 030566 60 --------EDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 60 --------~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
..+.+.+++.....+ ....+| ++|+..+||++.+ +|++++||||+...+...+..+.+++++++++
T Consensus 107 ~~~~kari~~l~k~l~l~~~~~r--Rv~~~S~G~kqkV~iARAlvh--~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~e 182 (245)
T COG4555 107 RKEIKARIAELSKRLQLLEYLDR--RVGEFSTGMKQKVAIARALVH--DPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE 182 (245)
T ss_pred hhHHHHHHHHHHHHhChHHHHHH--HHhhhchhhHHHHHHHHHHhc--CCCeEEEcCCCCCccHHHHHHHHHHHHHhhcC
Confidence 233344444332222 223334 8899999999999 99999999995555555567788899999999
Q ss_pred CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
|++| +++||.|+|++.+||++++++.|++|.-.
T Consensus 183 gr~v----iFSSH~m~EvealCDrvivlh~Gevv~~g 215 (245)
T COG4555 183 GRAV----IFSSHIMQEVEALCDRVIVLHKGEVVLEG 215 (245)
T ss_pred CcEE----EEecccHHHHHHhhheEEEEecCcEEEcC
Confidence 9999 99999999999999999999999987643
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=225.97 Aligned_cols=155 Identities=17% Similarity=0.152 Sum_probs=113.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccc--cCCCCccCCcchhccHHHHHHHhCCCC--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--NFDYPVAMDIRELISLEDVMEELGLGP-------- 70 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~-------- 70 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++... +.++.+ |....++..++.+|+.++.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vF--Q~~~LlPW~Tv~~NV~l~l~~~~~~~~ 105 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVF--QEDALLPWLTVLDNVALGLELRGKSKA 105 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEe--ccCcccchhhHHhhheehhhccccchH
Confidence 5999999999999999999999999999999999999876332 333444 4444555555555544433
Q ss_pred -----------------CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCC-CcccccccchHHHHHHHH-HHhCCC
Q 030566 71 -----------------NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCP-GQIELFTHVPVLRNFVDH-LKSRNF 131 (175)
Q Consensus 71 -----------------~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP-~~~~~~~~~~~~~~~l~~-l~~~g~ 131 (175)
........-+..|+||.+|+|+++. +|++|+|||| +..+..+ +..+++.+.+ ++++++
T Consensus 106 e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~--~P~lLLlDEPFgALDalT-R~~lq~~l~~lw~~~~~ 182 (248)
T COG1116 106 EARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALAT--RPKLLLLDEPFGALDALT-REELQDELLRLWEETRK 182 (248)
T ss_pred hHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhc--CCCEEEEcCCcchhhHHH-HHHHHHHHHHHHHhhCC
Confidence 2211111112338999999999999 9999999999 3333222 2334444444 567799
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
|| +++||+++|+-.++||+++|.+++..+
T Consensus 183 Tv----llVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 183 TV----LLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred EE----EEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 99 999999999999999999999987443
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=220.30 Aligned_cols=161 Identities=16% Similarity=0.158 Sum_probs=123.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc--------cccCCCCccCCcchhccHH------------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDYPVAMDIRELISLE------------ 60 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~--------~~~~~~~~~~~~~~~~~~~------------ 60 (175)
+||+++|+||||||||||+|||.+|.+|++|+|.++|.++. ++.++.++ +.++.|+..
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVF--Q~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVF--QQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeec--ccccccccchHHHHHHhhhHH
Confidence 59999999999999999999999999999999999996542 12344444 444444433
Q ss_pred --------------HHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 61 --------------DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 61 --------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
+.++.+++..........-+-.|+||.+|||+++- +|+++++|||+...+-.-...+.+.++++
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM--~P~vmLFDEPTSALDPElv~EVL~vm~~L 182 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM--DPKVMLFDEPTSALDPELVGEVLDVMKDL 182 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcC--CCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence 44445555443322221223348999999999999 99999999995444444445667789999
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYS 169 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (175)
+++|.|. +++||+|..+.+.+||++.|+.|..+-+++-.
T Consensus 183 A~eGmTM----ivVTHEM~FAr~VadrviFmd~G~iie~g~p~ 221 (240)
T COG1126 183 AEEGMTM----IIVTHEMGFAREVADRVIFMDQGKIIEEGPPE 221 (240)
T ss_pred HHcCCeE----EEEechhHHHHHhhheEEEeeCCEEEEecCHH
Confidence 9999999 99999999999999999999999777765433
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=231.65 Aligned_cols=161 Identities=16% Similarity=0.164 Sum_probs=130.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------------ccCCCCccCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------------~~~~~~~~~~~~~~~~--------- 58 (175)
+|+++||+||||||||||+|+|+|+++|++|+|.++|.++.. +...+++.+++++++.
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~ 109 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS 109 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC
Confidence 599999999999999999999999999999999999977532 2223444556655543
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCC-
Q 030566 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRN- 130 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g- 130 (175)
..++++.+++...........+..++||..++.++.. +|+++|||||+...+...+..++++|++++++|
T Consensus 110 ~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~ 187 (293)
T COG1131 110 KEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLH--DPELLILDEPTSGLDPESRREIWELLRELAKEGG 187 (293)
T ss_pred hhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC
Confidence 2356777777763222233344559999999999999 999999999977766777788899999998877
Q ss_pred CcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 131 FNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 131 ~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.|| +++||.+++++.+||++++++.|..+..+.
T Consensus 188 ~tv----lissH~l~e~~~~~d~v~il~~G~~~~~g~ 220 (293)
T COG1131 188 VTI----LLSTHILEEAEELCDRVIILNDGKIIAEGT 220 (293)
T ss_pred cEE----EEeCCcHHHHHHhCCEEEEEeCCEEEEeCC
Confidence 799 999999999999999999999998887653
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=228.14 Aligned_cols=161 Identities=17% Similarity=0.113 Sum_probs=124.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------ccCC-------CCccCCcchhccH--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFD-------YPVAMDIRELISL-------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~-------~~~~~~~~~~~~~-------- 59 (175)
+||++||+||||||||||+|+|+|+++|++|+|.++|.++.. +.++ +.+.+++.+++..
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 111 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS 111 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCC
Confidence 599999999999999999999999999999999999987532 1222 2333444444321
Q ss_pred --------HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCC
Q 030566 60 --------EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 60 --------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
.++++.+++..........-+..++||..+++++.. +|++++||||+...+..++..+++++++++++|.
T Consensus 112 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~--~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~ 189 (306)
T PRK13537 112 AAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN--DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGK 189 (306)
T ss_pred HHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC
Confidence 234445555432222222233348999999999999 9999999999777777778889999999987899
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|| +++||++++++++||+++++..|..+..++
T Consensus 190 ti----ll~sH~l~e~~~~~d~i~il~~G~i~~~g~ 221 (306)
T PRK13537 190 TI----LLTTHFMEEAERLCDRLCVIEEGRKIAEGA 221 (306)
T ss_pred EE----EEECCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99 999999999999999999999887765543
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=215.50 Aligned_cols=156 Identities=20% Similarity=0.237 Sum_probs=125.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------------ccCCCCccCCcchhcc--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------------~~~~~~~~~~~~~~~~-------- 58 (175)
+||+++++|||||||||++|+|.++++|++|+|.++|+++.. +.+++.|.+++.+++.
T Consensus 26 ~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w 105 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGW 105 (309)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCC
Confidence 599999999999999999999999999999999999988643 3456667777777765
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCC-CcccccccchHHHHHHHHHH
Q 030566 59 --------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCP-GQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 --------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP-~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++.+.....+...++| |+||.-++||++. +|+++++||| +..+-. .+..+++.+++++
T Consensus 106 ~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAa--dP~ilLMDEPFgALDpI-~R~~lQ~e~~~lq 182 (309)
T COG1125 106 DKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAA--DPPILLMDEPFGALDPI-TRKQLQEEIKELQ 182 (309)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhc--CCCeEeecCCccccChh-hHHHHHHHHHHHH
Confidence 356777788876433333345555 8999999999999 9999999999 222222 2445666778876
Q ss_pred h-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 128 S-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 128 ~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+ -|+|| +++|||++|+.+++|++.+|..|+.+
T Consensus 183 ~~l~kTi----vfVTHDidEA~kLadri~vm~~G~i~ 215 (309)
T COG1125 183 KELGKTI----VFVTHDIDEALKLADRIAVMDAGEIV 215 (309)
T ss_pred HHhCCEE----EEEecCHHHHHhhhceEEEecCCeEE
Confidence 5 49999 99999999999999999999988765
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=226.34 Aligned_cols=161 Identities=16% Similarity=0.141 Sum_probs=123.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------ccCC-------CCccCCcchhccH--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFD-------YPVAMDIRELISL-------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~-------~~~~~~~~~~~~~-------- 59 (175)
+||++||+||||||||||+|+|+|+++|++|+|.++|.++.. ..++ +.+.+++.+++..
T Consensus 66 ~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 145 (340)
T PRK13536 66 SGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS 145 (340)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCC
Confidence 599999999999999999999999999999999999986532 1222 2233344443321
Q ss_pred --------HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCC
Q 030566 60 --------EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 60 --------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
..+++.+++..........-+..++|+..++++++. +|+++|||||+...+...+..+++++++++++|.
T Consensus 146 ~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~--~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~ 223 (340)
T PRK13536 146 TREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALIN--DPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 223 (340)
T ss_pred HHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 133444555432222222233448999999999999 9999999999777777778888999999987899
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|| +++||++++++++||+++++..|..+.+++
T Consensus 224 ti----lisSH~l~e~~~~~d~i~il~~G~i~~~g~ 255 (340)
T PRK13536 224 TI----LLTTHFMEEAERLCDRLCVLEAGRKIAEGR 255 (340)
T ss_pred EE----EEECCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99 999999999999999999999888775543
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=223.38 Aligned_cols=160 Identities=18% Similarity=0.134 Sum_probs=122.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------ccCCCC-------ccCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYP-------VAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~-------~~~~~~~~~~--------- 58 (175)
+||++||+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++. +.+++.+++.
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 97 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLP 97 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 599999999999999999999999999999999999976421 123332 2234333332
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCC
Q 030566 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
..++++.+++..........-+..++||..+++++.. +|++++||||+...+...+..+++++++++++|.
T Consensus 98 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~ 175 (302)
T TIGR01188 98 KDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIH--QPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGV 175 (302)
T ss_pred HHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC
Confidence 1234555565432222222223348999999999999 9999999999777667777888889999987799
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
|| +++||+++++.++||+++++..|..+..+
T Consensus 176 tv----i~~sH~~~~~~~~~d~v~~l~~G~i~~~g 206 (302)
T TIGR01188 176 TI----LLTTHYMEEADKLCDRIAIIDHGRIIAEG 206 (302)
T ss_pred EE----EEECCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99 99999999999999999999888766443
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-32 Score=222.86 Aligned_cols=155 Identities=20% Similarity=0.135 Sum_probs=118.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc-----ccc-------cCCCCccCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----AAE-------NFDYPVAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~-----~~~-------~~~~~~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||||+|+|+.+|++|+|.++|.+. ..+ +..++|.+++++++.
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k 107 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPK 107 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCch
Confidence 4999999999999999999999999999999999999764 333 444555666666554
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CC
Q 030566 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
..++.+.+++.....+....-+-.|+||.+++|++.. +|++++||||....+..-+..++..+++++++ |.
T Consensus 108 ~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr--~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~ 185 (338)
T COG3839 108 AEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVR--KPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGT 185 (338)
T ss_pred HHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhc--CCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCC
Confidence 1345555555443322222223348999999999999 99999999994444455555677788888654 89
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccch
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
|+ +++|||-.|+..++|++++|..|.
T Consensus 186 T~----IYVTHDq~EAmtladri~Vm~~G~ 211 (338)
T COG3839 186 TT----IYVTHDQVEAMTLADRIVVMNDGR 211 (338)
T ss_pred cE----EEEcCCHHHHHhhCCEEEEEeCCe
Confidence 99 999999999999999999999554
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-32 Score=218.22 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=125.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeec---C-----cccccCCCCccCCcchhccHHHHHHHhCCCCCCc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL---D-----PAAENFDYPVAMDIRELISLEDVMEELGLGPNGG 73 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (175)
||.++|+||||||||||+|+|+|+..|++|.|.++|. | .+.+++++.+ +.+..|+..++.+|+.|+....
T Consensus 28 Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvF--Q~YALF~HmtVa~NIAFGl~~~ 105 (345)
T COG1118 28 GELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVF--QHYALFPHMTVADNIAFGLKVR 105 (345)
T ss_pred CcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEE--echhhcccchHHhhhhhccccc
Confidence 8999999999999999999999999999999999998 4 3446777777 8888888888888888876432
Q ss_pred hhh-------------------------hHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 74 LIY-------------------------CMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 74 ~~~-------------------------~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
+.. ....+ .|+||.++||+++- +|++|+||||....+.+.+..++.-|+++
T Consensus 106 ~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~--eP~vLLLDEPf~ALDa~vr~~lr~wLr~~ 183 (345)
T COG1118 106 KERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAV--EPKVLLLDEPFGALDAKVRKELRRWLRKL 183 (345)
T ss_pred ccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhc--CCCeEeecCCchhhhHHHHHHHHHHHHHH
Confidence 100 01122 37899999999999 99999999995555555566777788888
Q ss_pred HhC-CCcEEEEEeeeccchhhhhcCCCceeEeccch
Q 030566 127 KSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 127 ~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
.++ |.|+ +++|||.+|+.+++|++++|..|.
T Consensus 184 ~~~~~~tt----vfVTHD~eea~~ladrvvvl~~G~ 215 (345)
T COG1118 184 HDRLGVTT----VFVTHDQEEALELADRVVVLNQGR 215 (345)
T ss_pred HHhhCceE----EEEeCCHHHHHhhcceEEEecCCe
Confidence 765 9999 999999999999999999999995
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-32 Score=222.76 Aligned_cols=155 Identities=14% Similarity=0.070 Sum_probs=121.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc-----ccccCCCCccCCcchhccHHHHHHHhCCCCCCch-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----AAENFDYPVAMDIRELISLEDVMEELGLGPNGGL- 74 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 74 (175)
+||+++|+||||||||||||+|+|+.+|++|+|.++|+++ .++++++++ +.+..|+..+|.+|++++....+
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VF--Q~YALFPHltV~~NVafGLk~~~~ 107 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVF--QSYALFPHMTVEENVAFGLKVRKK 107 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceee--cCcccCCCCcHHHHhhhhhhhcCC
Confidence 5999999999999999999999999999999999999864 445666666 66666666666666655544111
Q ss_pred -----------------------hhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH-h
Q 030566 75 -----------------------IYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-S 128 (175)
Q Consensus 75 -----------------------~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-~ 128 (175)
.....++| |+||.+|||++.. +|++|+||||-...+.+-+..++..+++++ +
T Consensus 108 ~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~--~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~ 185 (352)
T COG3842 108 LKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVP--EPKVLLLDEPLSALDAKLREQMRKELKELQRE 185 (352)
T ss_pred CCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhc--CcchhhhcCcccchhHHHHHHHHHHHHHHHHh
Confidence 01123333 8899999999999 999999999944444555667777788875 4
Q ss_pred CCCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 129 RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 129 ~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
.|.|. +++|||-+|+..++|++++|..|...
T Consensus 186 ~giT~----i~VTHDqeEAl~msDrI~Vm~~G~I~ 216 (352)
T COG3842 186 LGITF----VYVTHDQEEALAMSDRIAVMNDGRIE 216 (352)
T ss_pred cCCeE----EEEECCHHHHhhhccceEEccCCcee
Confidence 59999 99999999999999999999987653
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-32 Score=212.03 Aligned_cols=161 Identities=18% Similarity=0.155 Sum_probs=117.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccc------cCCCCccCCcchhccHHHHHH----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE------NFDYPVAMDIRELISLEDVME---------- 64 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------- 64 (175)
+||+++||||||||||||+++|+|.++|++|+|.+.|.++... ..+....+|....|+..+++|
T Consensus 29 ~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~ 108 (250)
T COG0411 29 PGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARL 108 (250)
T ss_pred CCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhh
Confidence 5999999999999999999999999999999999999876331 112222223333333333333
Q ss_pred ---------------------------HhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccch
Q 030566 65 ---------------------------ELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVP 117 (175)
Q Consensus 65 ---------------------------~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~ 117 (175)
.+++..........-...++.+..++++++. +|++|+||||+...-....+
T Consensus 109 ~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~--~P~lLLLDEPaAGln~~e~~ 186 (250)
T COG0411 109 GLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALAT--QPKLLLLDEPAAGLNPEETE 186 (250)
T ss_pred hhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhc--CCCEEEecCccCCCCHHHHH
Confidence 3333332211111112235666788999999 99999999995554455566
Q ss_pred HHHHHHHHHHh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 118 VLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 118 ~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.+.++++++++ .|.|| +++-|+|..+.++||++++|..|.++-+++
T Consensus 187 ~l~~~i~~i~~~~g~ti----llIEHdM~~Vm~l~dri~Vl~~G~~IAeG~ 233 (250)
T COG0411 187 ELAELIRELRDRGGVTI----LLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233 (250)
T ss_pred HHHHHHHHHHhcCCcEE----EEEEeccHHHhhhccEEEeccCCcCcccCC
Confidence 77789999987 46999 999999999999999999999998876654
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=207.32 Aligned_cols=153 Identities=18% Similarity=0.150 Sum_probs=118.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-----------c-------ccCCCCccCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------A-------ENFDYPVAMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----------~-------~~~~~~~~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+++|.|+.+|++|+|.++|.+.. . |+..+.+.+++.+++.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~ 109 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLL 109 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHH
Confidence 59999999999999999999999999999999999996642 1 2334445556665554
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
...+++.+++........ ..++| |+||.++||+++. +|++++.|||+...+....+.+.++++
T Consensus 110 ~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~-p~eLSGGqqQRVAIARAL~~--~P~iilADEPTgnLD~~t~~~V~~ll~ 186 (226)
T COG1136 110 IAGKSAGRRKRAAEELLEVLGLEDRLLKKK-PSELSGGQQQRVAIARALIN--NPKIILADEPTGNLDSKTAKEVLELLR 186 (226)
T ss_pred HcCCChhHHHHHHHHHHHhcCChhhhccCC-chhcCHHHHHHHHHHHHHhc--CCCeEEeeCccccCChHHHHHHHHHHH
Confidence 123444556654332121 23444 9999999999999 999999999977777777888888999
Q ss_pred HHHh-CCCcEEEEEeeeccchhhhhcCCCceeEeccch
Q 030566 125 HLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 125 ~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
++++ .|.|+ +++||+.+.+ .+|||++.+..|.
T Consensus 187 ~~~~~~g~ti----i~VTHd~~lA-~~~dr~i~l~dG~ 219 (226)
T COG1136 187 ELNKERGKTI----IMVTHDPELA-KYADRVIELKDGK 219 (226)
T ss_pred HHHHhcCCEE----EEEcCCHHHH-HhCCEEEEEeCCe
Confidence 9865 48999 9999997755 6999998888775
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-32 Score=207.27 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=118.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----ccCCCCc--------cCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDYPV--------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----~~~~~~~--------~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. +.++|.+ ..++.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~ 104 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGN 104 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccH
Confidence 599999999999999999999999999999999999976421 1222222 112222221
Q ss_pred --HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEE
Q 030566 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (175)
Q Consensus 59 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~ 136 (175)
..++++.+++..........-+..++||..+++++.. +|++++||||....+...++.+.+++++++++|.|+
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti--- 179 (205)
T cd03226 105 EQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLS--GKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAV--- 179 (205)
T ss_pred HHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEE---
Confidence 2334555555433222222223348999999999999 999999999977766777788888999987778999
Q ss_pred EeeeccchhhhhcCCCceeEeccchh
Q 030566 137 YLLDSQVCIRFRTLPPCIVCFCCTHT 162 (175)
Q Consensus 137 ~l~~sH~~~~~~~~~~~~~~~~~~~~ 162 (175)
+++||+++++.++||+++++..+..
T Consensus 180 -i~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 180 -IVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred -EEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999988754
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=207.60 Aligned_cols=155 Identities=13% Similarity=0.130 Sum_probs=116.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCCCc-------cCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 107 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRI 107 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHh
Confidence 599999999999999999999999999999999999876421 1233322 223333221
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..++||..+++++.. +|++++||||....+....+.+.+++++++
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 185 (216)
T TIGR00960 108 IGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVH--KPPLLLADEPTGNLDPELSRDIMRLFEEFN 185 (216)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 1223444555432211111123348999999999999 999999999976666777778888999987
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccch
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
++|.|| +++||+++++.++||+++++..|.
T Consensus 186 ~~~~ti----i~vsH~~~~~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 186 RRGTTV----LVATHDINLVETYRHRTLTLSRGR 215 (216)
T ss_pred HCCCEE----EEEeCCHHHHHHhCCEEEEEeCCc
Confidence 778999 999999999999999999998764
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-32 Score=209.10 Aligned_cols=160 Identities=18% Similarity=0.147 Sum_probs=123.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccc--------cC---------CCCccCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--------NF---------DYPVAMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~--------~~---------~~~~~~~~~~~~~----- 58 (175)
+||++||+|++|||||||.|+|+|+.+|++|+|.++|.+.... .+ .+.|..++++.+.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~ 111 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP 111 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc
Confidence 5999999999999999999999999999999999999653221 11 1222223332221
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 ---------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++...-..+.+ .++| |+||.+++||+.- +|++||+|||....+......+++++.+++
T Consensus 112 ~~~~~~~~~i~~~L~~VgL~~~~l~R~P-~eLSGGQ~QRiaIARAL~~--~PklLIlDEptSaLD~siQa~IlnlL~~l~ 188 (252)
T COG1124 112 HGLSKSQQRIAELLDQVGLPPSFLDRRP-HELSGGQRQRIAIARALIP--EPKLLILDEPTSALDVSVQAQILNLLLELK 188 (252)
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHhcCc-hhcChhHHHHHHHHHHhcc--CCCEEEecCchhhhcHHHHHHHHHHHHHHH
Confidence 3677888888765433333 3344 9999999999999 999999999955545555667778998886
Q ss_pred h-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 128 S-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+ .+.|. +++|||+.-+..+|||+++|++|..|-...
T Consensus 189 ~~~~lt~----l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~ 225 (252)
T COG1124 189 KERGLTY----LFISHDLALVEHMCDRIAVMDNGQIVEIGP 225 (252)
T ss_pred HhcCceE----EEEeCcHHHHHHHhhheeeeeCCeEEEeec
Confidence 4 58899 999999999999999999999998775544
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=207.79 Aligned_cols=157 Identities=17% Similarity=0.108 Sum_probs=116.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----ccCCCCc-------cCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYPV-------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~~-------~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~ 104 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPK 104 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCH
Confidence 599999999999999999999999999999999999876421 1222222 123322221
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCC
Q 030566 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~ 131 (175)
..++++.+++..........-+..++||..++++++. +|++++||||+...+......+.++++++++ +|.
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~--~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 182 (213)
T cd03259 105 AEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAR--EPSLLLLDEPLSALDAKLREELREELKELQRELGI 182 (213)
T ss_pred HHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC
Confidence 1223444444322111111123348999999999999 9999999999777667777888889999865 489
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|| +++||+++++.++||++++++.+..+
T Consensus 183 ti----i~~sH~~~~~~~~~d~v~~l~~G~i~ 210 (213)
T cd03259 183 TT----IYVTHDQEEALALADRIAVMNEGRIV 210 (213)
T ss_pred EE----EEEecCHHHHHHhcCEEEEEECCEEE
Confidence 99 99999999999999999999987654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-32 Score=214.73 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=126.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCCCc-------cCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||++||+|.||||||||+|||.+|.+|++|+|.++|.++.. +.++..+ ..++.+++.
T Consensus 31 ~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLei 110 (339)
T COG1135 31 KGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLEL 110 (339)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhh
Confidence 599999999999999999999999999999999999976422 3444433 223444332
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
..++++.++++.+..... ..+| ||||+.+|||++. +|++|+.|||+...+....+.+.++|++
T Consensus 111 ag~~k~ei~~RV~elLelVgL~dk~~~yP--~qLSGGQKQRVaIARALa~--~P~iLL~DEaTSALDP~TT~sIL~LL~~ 186 (339)
T COG1135 111 AGVPKAEIKQRVAELLELVGLSDKADRYP--AQLSGGQKQRVAIARALAN--NPKILLCDEATSALDPETTQSILELLKD 186 (339)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhccCc--hhcCcchhhHHHHHHHHhc--CCCEEEecCccccCChHHHHHHHHHHHH
Confidence 245566666664432222 3344 9999999999999 9999999999666556666778889999
Q ss_pred HHh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhhh
Q 030566 126 LKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYS 169 (175)
Q Consensus 126 l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (175)
+++ .|.|| +++||.|+.+.++|+++++|++|..+-+++..
T Consensus 187 In~~lglTI----vlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~ 227 (339)
T COG1135 187 INRELGLTI----VLITHEMEVVKRICDRVAVLDQGRLVEEGTVS 227 (339)
T ss_pred HHHHcCCEE----EEEechHHHHHHHhhhheEeeCCEEEEeccHH
Confidence 864 59999 99999999999999999999999998877653
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=217.41 Aligned_cols=160 Identities=17% Similarity=0.144 Sum_probs=120.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------ccCCCC-------ccCCcchhccH--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYP-------VAMDIRELISL-------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~-------~~~~~~~~~~~-------- 59 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++|. +.+++.+++..
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 108 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS 108 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCC
Confidence 599999999999999999999999999999999999876421 122222 22344333321
Q ss_pred --------HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCC
Q 030566 60 --------EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 60 --------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
..+++.+++..........-+..++||..++++++. +|++++||||+...+...++.+++++++++++|.
T Consensus 109 ~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~ 186 (303)
T TIGR01288 109 TREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIN--DPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 186 (303)
T ss_pred HHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC
Confidence 123344444332212222223348999999999999 9999999999777677778888889999977899
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
|| +++||+++++.++||+++++..|..+.++
T Consensus 187 ti----l~~sH~~~~~~~~~d~i~~l~~G~i~~~g 217 (303)
T TIGR01288 187 TI----LLTTHFMEEAERLCDRLCVLESGRKIAEG 217 (303)
T ss_pred EE----EEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99 99999999999999999999988766443
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=224.02 Aligned_cols=157 Identities=13% Similarity=0.169 Sum_probs=122.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc---------------ccCCCCccCCcchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------------~~~~~~~~~~~~~~~~------- 58 (175)
+|||++|+|+||||||||+++|.|+++|++|+|.++|++... |.+.+.+.+++.+++.
T Consensus 29 ~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~ 108 (501)
T COG3845 29 KGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSK 108 (501)
T ss_pred CCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcccc
Confidence 599999999999999999999999999999999999987432 2223333334433332
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++.+.+++.-+.......-+..++||..+-++|.+ +|++||||||+........+.+.+.++++
T Consensus 109 ~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr--~a~iLILDEPTaVLTP~E~~~lf~~l~~l 186 (501)
T COG3845 109 GGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYR--GARLLILDEPTAVLTPQEADELFEILRRL 186 (501)
T ss_pred ccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 1334444444433322222223447899999999999 99999999997777777788888899999
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+++|+|| +++||.+.|+..+|||+.++..|+++
T Consensus 187 ~~~G~tI----i~ITHKL~Ev~~iaDrvTVLR~Gkvv 219 (501)
T COG3845 187 AAEGKTI----IFITHKLKEVMAIADRVTVLRRGKVV 219 (501)
T ss_pred HHCCCEE----EEEeccHHHHHHhhCeeEEEeCCeEE
Confidence 9999999 99999999999999999999999754
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=207.57 Aligned_cols=160 Identities=16% Similarity=0.166 Sum_probs=124.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc---ccCCC-------CccCCcchhcc------------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS------------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---~~~~~-------~~~~~~~~~~~------------ 58 (175)
+|++.|++|||||||||++|+|+|+++|++|+|.|+|.+... +.++| ++.+++.+++.
T Consensus 27 ~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e 106 (300)
T COG4152 27 PGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAE 106 (300)
T ss_pred CCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHH
Confidence 499999999999999999999999999999999999987543 23444 44556665554
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCc
Q 030566 59 ----LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFN 132 (175)
Q Consensus 59 ----~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~t 132 (175)
...+++.+++...... +.+++| .+|+.-+..++.+ +|+++|||||-...+.-+.+.+.+.+.+++++|.|
T Consensus 107 ~~~~~~~wLer~~i~~~~~~--kIk~LSKGnqQKIQfisaviH--ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~Gat 182 (300)
T COG4152 107 IQKKLQAWLERLEIVGKKTK--KIKELSKGNQQKIQFISAVIH--EPELLILDEPFSGLDPVNVELLKDAIFELKEEGAT 182 (300)
T ss_pred HHHHHHHHHHhccccccccc--hHHHhhhhhhHHHHHHHHHhc--CCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCE
Confidence 2456777777665433 345666 4566666668888 99999999992222222344566788889999999
Q ss_pred EEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 133 VCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 133 vli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
| +++||.|+.++++||++.++.-|..|.+++.
T Consensus 183 I----ifSsH~Me~vEeLCD~llmL~kG~~V~~G~v 214 (300)
T COG4152 183 I----IFSSHRMEHVEELCDRLLMLKKGQTVLYGTV 214 (300)
T ss_pred E----EEecchHHHHHHHhhhhheecCCceEEeccH
Confidence 9 9999999999999999999999999988753
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=220.42 Aligned_cols=161 Identities=14% Similarity=0.148 Sum_probs=122.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCCCc-------cCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||++||+||||||||||+|+|+|+.+|++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 30 ~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~ 109 (343)
T TIGR02314 30 AGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109 (343)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHH
Confidence 599999999999999999999999999999999999976421 1233322 234433332
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..|+||..++|+++. +|+++++|||+...+......+.+++++++
T Consensus 110 ~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~--~P~iLLlDEPts~LD~~t~~~i~~lL~~l~ 187 (343)
T TIGR02314 110 DNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALAS--NPKVLLCDEATSALDPATTQSILELLKEIN 187 (343)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 1244555666443222222223348999999999999 999999999966666777778888999987
Q ss_pred hC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 128 SR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++ |.|| +++||+++.+.++||++++|+.|..+-+++
T Consensus 188 ~~~g~ti----iliTH~~~~v~~~~d~v~vl~~G~iv~~g~ 224 (343)
T TIGR02314 188 RRLGLTI----LLITHEMDVVKRICDCVAVISNGELIEQGT 224 (343)
T ss_pred HhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 64 8999 999999999999999999999888765543
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=208.85 Aligned_cols=162 Identities=18% Similarity=0.143 Sum_probs=119.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCCCc-------cCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+ .+++.+++.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 104 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLRE 104 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhh
Confidence 599999999999999999999999999999999999875421 1223322 123222221
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..++||..+++++.. +|++++||||....+......+.++++++
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~ 182 (235)
T cd03261 105 HTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALAL--DPELLLYDEPTAGLDPIASGVIDDLIRSL 182 (235)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 1123444444332211111123348999999999999 99999999997666677777888899998
Q ss_pred Hh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
++ +|.|| +++||+++++.++||+++++..|..+.+++.
T Consensus 183 ~~~~~~tv----i~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~ 221 (235)
T cd03261 183 KKELGLTS----IMVTHDLDTAFAIADRIAVLYDGKIVAEGTP 221 (235)
T ss_pred HHhcCcEE----EEEecCHHHHHHhcCEEEEEECCeEEEecCH
Confidence 76 48999 9999999999999999999998887665443
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=205.59 Aligned_cols=154 Identities=15% Similarity=0.151 Sum_probs=115.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCCCc-------cCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEV 106 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHH
Confidence 599999999999999999999999999999999999876421 1223322 122322221
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..+.++.+++..........-+..++||..++++++. +|++++||||....+...++.+.+++++++
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 184 (214)
T TIGR02673 107 RGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVN--SPPLLLADEPTGNLDPDLSERILDLLKRLN 184 (214)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 1223344444322111111123348999999999999 999999999977777777888888999987
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccc
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
++|.|| +++||+++++.++||++++++.|
T Consensus 185 ~~~~ti----i~~tH~~~~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 185 KRGTTV----IVATHDLSLVDRVAHRVIILDDG 213 (214)
T ss_pred HcCCEE----EEEeCCHHHHHHhcCEEEEecCC
Confidence 778999 99999999999999999999865
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=206.26 Aligned_cols=157 Identities=19% Similarity=0.190 Sum_probs=117.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------ccCCCC-------ccCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYP-------VAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~-------~~~~~~~~~~--------- 58 (175)
+||+++|+|+||||||||+|+|+|+++|++|+|.++|.++.. +.+++. +..++.+++.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 109 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLK 109 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCC
Confidence 499999999999999999999999999999999999876421 112222 2223333321
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCC
Q 030566 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.+++++++++|.
T Consensus 110 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~ 187 (218)
T cd03266 110 GDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVH--DPPVLLLDEPTTGLDVMATRALREFIRQLRALGK 187 (218)
T ss_pred HHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCC
Confidence 1234444554322111111122348899999999999 9999999999777667777888889999877789
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|| +++||+.+++.+++|+++++..+..+
T Consensus 188 ti----i~~tH~~~~~~~~~d~i~~l~~G~i~ 215 (218)
T cd03266 188 CI----LFSTHIMQEVERLCDRVVVLHRGRVV 215 (218)
T ss_pred EE----EEEeCCHHHHHHhcCEEEEEECCEEe
Confidence 99 99999999999999999999888654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=216.36 Aligned_cols=160 Identities=19% Similarity=0.238 Sum_probs=121.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------ccCCC-------CccCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~-------~~~~~~~~~~~--------- 58 (175)
+||++||+||||||||||+|+|+|+++|++|+|.++|.++.. +.++| .+.+++.+++.
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~ 106 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMK 106 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 599999999999999999999999999999999999976422 12222 22333443332
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCC
Q 030566 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
..++++.+++..........-+..++||..+++++.. +|++++||||+...+...++.++++++++++ +.
T Consensus 107 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~--~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~ 183 (301)
T TIGR03522 107 GQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIH--DPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DK 183 (301)
T ss_pred HHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CC
Confidence 1234445555433222222233448999999999999 9999999999777667778888889999865 78
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|| +++||++++++++||+++++..|..+..++
T Consensus 184 ti----ii~sH~l~~~~~~~d~i~~l~~G~i~~~g~ 215 (301)
T TIGR03522 184 TI----ILSTHIMQEVEAICDRVIIINKGKIVADKK 215 (301)
T ss_pred EE----EEEcCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99 999999999999999999998888765443
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=206.87 Aligned_cols=160 Identities=14% Similarity=0.111 Sum_probs=118.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------ccCCCC-------ccCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYP-------VAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~-------~~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++. +..++.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 104 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVP 104 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCC
Confidence 599999999999999999999999999999999999865421 112222 2223332221
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-C
Q 030566 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-N 130 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g 130 (175)
..++++.+++..........-+..|+||..+++++.. +|++++||||....+....+.+.+++++++++ |
T Consensus 105 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 182 (220)
T cd03265 105 GAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVH--RPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFG 182 (220)
T ss_pred HHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcC
Confidence 1233444555432211111123348999999999999 99999999996666667777888899998765 8
Q ss_pred CcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 131 FNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 131 ~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.|| +++||+++++..+|++++++..|..+..+
T Consensus 183 ~tv----i~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 214 (220)
T cd03265 183 MTI----LLTTHYMEEAEQLCDRVAIIDHGRIIAEG 214 (220)
T ss_pred CEE----EEEeCCHHHHHHhCCEEEEEeCCEEEEeC
Confidence 899 99999999999999999999998876543
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=223.27 Aligned_cols=161 Identities=16% Similarity=0.124 Sum_probs=121.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCC-------ccCCcchhcc--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYP-------VAMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~-------~~~~~~~~~~-------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. +.+++. +.+++.+++.
T Consensus 28 ~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~ 107 (402)
T PRK09536 28 EGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRS 107 (402)
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcc
Confidence 599999999999999999999999999999999999976432 112222 2222222211
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..|+||..+++++++ +|++++||||....+...+..++++|+++
T Consensus 108 ~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~--~P~iLLLDEPtsgLD~~~~~~l~~lL~~l 185 (402)
T PRK09536 108 RFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQ--ATPVLLLDEPTASLDINHQVRTLELVRRL 185 (402)
T ss_pred cccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 2334455555432222222233448999999999999 99999999996666666777888899999
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++|.|| +++||+++++.++||+++++..|..+.+++
T Consensus 186 ~~~g~TI----IivsHdl~~~~~~adrii~l~~G~iv~~G~ 222 (402)
T PRK09536 186 VDDGKTA----VAAIHDLDLAARYCDELVLLADGRVRAAGP 222 (402)
T ss_pred HhcCCEE----EEEECCHHHHHHhCCEEEEEECCEEEEecC
Confidence 8778999 999999999999999999999988766544
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=204.26 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=120.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCCCc-------cCCcchhccH----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELISL---- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~~---- 59 (175)
+||+++|+||||||||||+|+|.|+++|++|+|.++|.++.. +++++.+ .+++++++.+
T Consensus 33 ~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre 112 (263)
T COG1127 33 RGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE 112 (263)
T ss_pred CCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHh
Confidence 599999999999999999999999999999999999998532 2233333 3344444431
Q ss_pred -------------HHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHH
Q 030566 60 -------------EDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 60 -------------~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..-++.+++........+ .++| ++.|.+||||++. ||+++++|||+...+--....+.++++
T Consensus 113 ~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-sELSGGM~KRvaLARAial--dPell~~DEPtsGLDPI~a~~~~~LI~ 189 (263)
T COG1127 113 HTKLPESLIRELVLMKLELVGLRGAAADLYP-SELSGGMRKRVALARAIAL--DPELLFLDEPTSGLDPISAGVIDELIR 189 (263)
T ss_pred hccCCHHHHHHHHHHHHHhcCCChhhhhhCc-hhhcchHHHHHHHHHHHhc--CCCEEEecCCCCCCCcchHHHHHHHHH
Confidence 112233344333111222 3444 7888999999999 999999999944444445567778999
Q ss_pred HHHhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 125 HLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 125 ~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
++++. |.|+ +++||+++++...||+++++..++++-+++.
T Consensus 190 ~L~~~lg~T~----i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 190 ELNDALGLTV----IMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHhhCCEE----EEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 99765 8999 9999999999999999999999988766654
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=204.71 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=117.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc---ccCCC-------CccCCcchhcc------------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS------------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---~~~~~-------~~~~~~~~~~~------------ 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+++ .+..++.+++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 104 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEE 104 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHH
Confidence 599999999999999999999999999999999999976421 11222 22233333321
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEE
Q 030566 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVC 134 (175)
Q Consensus 59 ----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvl 134 (175)
..++++.+++..........-+..++++..++++++. +|++++||||....+....+.+.++++++++++.||
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~--~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~ti- 181 (210)
T cd03269 105 ARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIH--DPELLILDEPFSGLDPVNVELLKDVIRELARAGKTV- 181 (210)
T ss_pred HHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEE-
Confidence 1223444444322111111123348899999999999 999999999976666777778888999987778899
Q ss_pred EEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 135 AVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 135 i~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+++||+.+++.+++|+++++..+..+
T Consensus 182 ---i~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 182 ---ILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred ---EEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 99999999999999999999887654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=220.71 Aligned_cols=158 Identities=16% Similarity=0.074 Sum_probs=119.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-----cccCC-------CCccCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFD-------YPVAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----~~~~~-------~~~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++. .+.++ +.+.+++.+++.
T Consensus 29 ~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~ 108 (356)
T PRK11650 29 DGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPK 108 (356)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCH
Confidence 59999999999999999999999999999999999997642 12233 333344444432
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CC
Q 030566 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
..++++.+++..........-+..|+||.+|+|++.. +|++++||||....+...+..+.+.+++++++ |.
T Consensus 109 ~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~--~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 186 (356)
T PRK11650 109 AEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVR--EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKT 186 (356)
T ss_pred HHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 1234455555432222222223348999999999999 99999999996666666677788889888664 89
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
|+ +++||+.+++..++|++++|..|..+-
T Consensus 187 ti----i~vTHd~~ea~~l~D~i~vl~~G~i~~ 215 (356)
T PRK11650 187 TS----LYVTHDQVEAMTLADRVVVMNGGVAEQ 215 (356)
T ss_pred EE----EEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 99 999999999999999999999887643
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=207.00 Aligned_cols=160 Identities=18% Similarity=0.084 Sum_probs=117.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--ccCCCC-------ccCCcchhcc-------------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYP-------VAMDIRELIS------------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--~~~~~~-------~~~~~~~~~~------------- 58 (175)
+|++++|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.+++. +..++.+++.
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 108 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEA 108 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHH
Confidence 599999999999999999999999999999999999876421 122222 2223333321
Q ss_pred ---HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCCcEE
Q 030566 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVC 134 (175)
Q Consensus 59 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvl 134 (175)
..++++.+++..........-+..++||..++++++. +|++++||||....+....+.+.++++++++ +|.||
T Consensus 109 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~ti- 185 (220)
T cd03293 109 RERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAV--DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTV- 185 (220)
T ss_pred HHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEE-
Confidence 1233444554322111111223348999999999999 9999999999777667777788889998854 58899
Q ss_pred EEEeeeccchhhhhcCCCceeEec--cchhhHHh
Q 030566 135 AVYLLDSQVCIRFRTLPPCIVCFC--CTHTVVQR 166 (175)
Q Consensus 135 i~~l~~sH~~~~~~~~~~~~~~~~--~~~~~~~~ 166 (175)
+++||+++++.++||+++++. .|..+-+.
T Consensus 186 ---ii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~ 216 (220)
T cd03293 186 ---LLVTHDIDEAVFLADRVVVLSARPGRIVAEV 216 (220)
T ss_pred ---EEEecCHHHHHHhCCEEEEEECCCCEEEEEE
Confidence 999999999999999999998 56655433
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=206.93 Aligned_cols=160 Identities=16% Similarity=0.149 Sum_probs=117.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCc-------cCCcchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.+... ..+++.+ ..++.+++.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG 104 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC
Confidence 599999999999999999999999999999999999875421 1122222 122222221
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC
Q 030566 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
..++++.+++..........-+..++||..+++++.. +|++++||||....+....+.+.+++++++++
T Consensus 105 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 182 (232)
T cd03218 105 LSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALAT--NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR 182 (232)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 1123334444321111111122348899999999999 99999999997666677777888899998777
Q ss_pred CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+.|| +++||+++++..++|+++++..|..+...
T Consensus 183 ~~ti----i~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 215 (232)
T cd03218 183 GIGV----LITDHNVRETLSITDRAYIIYEGKVLAEG 215 (232)
T ss_pred CCEE----EEEeCCHHHHHHhCCEEEEEECCeEEEEe
Confidence 8999 99999999999999999999988765443
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=207.15 Aligned_cols=161 Identities=17% Similarity=0.169 Sum_probs=119.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCc-------cCCcchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~------- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++|.+ .+++.+++.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~ 104 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQART 104 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcc
Confidence 599999999999999999999999999999999999875421 1122222 223322211
Q ss_pred -------------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 59 -------------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 -------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..++++.+++..........-+..++||..+++++.. +|++++||||+...+......+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l 182 (236)
T cd03219 105 GSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT--DPKLLLLDEPAAGLNPEETEEL 182 (236)
T ss_pred ccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHH
Confidence 1223344444332211111123348899999999999 9999999999777667777888
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.+++++++++|.|| +++||+++++.++||+++++..|..+.++.
T Consensus 183 ~~~l~~~~~~~~ti----i~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 183 AELIRELRERGITV----LLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHCCCEE----EEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 88999987778999 999999999999999999999888765543
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=219.31 Aligned_cols=160 Identities=15% Similarity=0.105 Sum_probs=122.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-----cccC-------CCCccCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENF-------DYPVAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----~~~~-------~~~~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|+++. .+.+ ...+.+++.+++.
T Consensus 29 ~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~ 108 (353)
T TIGR03265 29 KGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGR 108 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCH
Confidence 49999999999999999999999999999999999997642 1222 2333445544443
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CC
Q 030566 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
..++++.+++..........-+..|+||.+|+|+++. +|++++||||....+...+..+++.|+++.++ |.
T Consensus 109 ~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~--~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~ 186 (353)
T TIGR03265 109 AEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALAT--SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGV 186 (353)
T ss_pred HHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 2345555666543322222223348999999999999 99999999996665666677888889888654 89
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
|+ +++||+.+++..++|++++|..|..+-++
T Consensus 187 tv----i~vTHd~~ea~~l~d~i~vl~~G~i~~~g 217 (353)
T TIGR03265 187 TT----IMVTHDQEEALSMADRIVVMNHGVIEQVG 217 (353)
T ss_pred EE----EEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99 99999999999999999999988765443
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-31 Score=203.51 Aligned_cols=154 Identities=18% Similarity=0.135 Sum_probs=114.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc--------cCCcchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV--------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~--------~~~~~~~~~------- 58 (175)
+|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.++|.+ ..++.+++.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~ 105 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG 105 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcC
Confidence 599999999999999999999999999999999999875421 1222222 122222221
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC
Q 030566 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
..++++.+++..........-+..++|+..++++++. +|++++||||+...+....+.+.+++++++++
T Consensus 106 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 183 (211)
T cd03225 106 LPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAM--DPDILLLDEPTAGLDPAGRRELLELLKKLKAE 183 (211)
T ss_pred CCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc
Confidence 1123444444322111111223348999999999999 99999999996666677777888899998777
Q ss_pred CCcEEEEEeeeccchhhhhcCCCceeEeccc
Q 030566 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
|.|| +++||+++++..+||+++++..|
T Consensus 184 ~~tv----i~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 184 GKTI----IIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred CCEE----EEEeCCHHHHHHhCCEEEEEeCC
Confidence 8999 99999999999999999999765
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=204.42 Aligned_cols=154 Identities=16% Similarity=0.131 Sum_probs=114.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCCCCc-------cCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPV-------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~-------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ .+++.+++.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 108 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLL 108 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHh
Confidence 599999999999999999999999999999999999876421 1222222 223332221
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..++|+..++++++. +|++++||||....+....+.+.++++++
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 186 (218)
T cd03255 109 LAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAN--DPKIILADEPTGNLDSETGKEVMELLREL 186 (218)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHcc--CCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 1234444555332211111123348999999999999 99999999996666677778888899998
Q ss_pred Hh-CCCcEEEEEeeeccchhhhhcCCCceeEeccch
Q 030566 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
++ +|.|| +++||+++++. +||++++++.|.
T Consensus 187 ~~~~~~ti----i~~sH~~~~~~-~~d~v~~l~~G~ 217 (218)
T cd03255 187 NKEAGTTI----VVVTHDPELAE-YADRIIELRDGK 217 (218)
T ss_pred HHhcCCeE----EEEECCHHHHh-hhcEEEEeeCCc
Confidence 76 58999 99999999987 999999998764
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-31 Score=202.67 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=117.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----ccCCCCc-------cCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYPV-------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~~-------~~~~~~~~~---------- 58 (175)
+|++++|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 104 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRK 104 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcH
Confidence 599999999999999999999999999999999999986531 1222222 223333221
Q ss_pred --HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEE
Q 030566 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (175)
Q Consensus 59 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~ 136 (175)
...+++.+++..........-+..++++..++++++. +|++++||||+...+....+.+.+++++++++|.|+
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti--- 179 (208)
T cd03268 105 KRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLG--NPDLLILDEPTNGLDPDGIKELRELILSLRDQGITV--- 179 (208)
T ss_pred HHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhc--CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEE---
Confidence 1223344444322111111122348899999999999 999999999966666777778888999987778999
Q ss_pred EeeeccchhhhhcCCCceeEeccchhh
Q 030566 137 YLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 137 ~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+++||+++++.+++|+++++..+..+
T Consensus 180 -i~~tH~~~~~~~~~d~v~~l~~g~i~ 205 (208)
T cd03268 180 -LISSHLLSEIQKVADRIGIINKGKLI 205 (208)
T ss_pred -EEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999988754
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=206.15 Aligned_cols=161 Identities=16% Similarity=0.061 Sum_probs=118.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccc---------cCCCCccCCcchhcc-------------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE---------NFDYPVAMDIRELIS------------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~---------~~~~~~~~~~~~~~~------------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++... ...+.+..++.+++.
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~ 89 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKS 89 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCHH
Confidence 5999999999999999999999999999999999998764321 111122223333221
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CCc
Q 030566 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NFN 132 (175)
Q Consensus 59 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~t 132 (175)
..++++.+++..........-+..++||..+++++.. +|+++|||||....+......+.+++++++++ |.|
T Consensus 90 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~t 167 (230)
T TIGR01184 90 ERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSI--RPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVT 167 (230)
T ss_pred HHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCE
Confidence 1223444444321111111123348899999999999 99999999997776677777888899888654 889
Q ss_pred EEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 133 VCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 133 vli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
| +++||+++++.++||++++++.+..+.+.+
T Consensus 168 i----i~~sH~~~~~~~~~d~v~~l~~G~i~~~~~ 198 (230)
T TIGR01184 168 V----LMVTHDVDEALLLSDRVVMLTNGPAANIGQ 198 (230)
T ss_pred E----EEEeCCHHHHHHhcCEEEEEeCCcEecccC
Confidence 9 999999999999999999999988775543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-31 Score=203.19 Aligned_cols=157 Identities=18% Similarity=0.148 Sum_probs=115.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----ccCCCCc-------cCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYPV-------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~~-------~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~ 102 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLT 102 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccCcc
Confidence 599999999999999999999999999999999999875421 1122222 122222211
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCC
Q 030566 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~ 131 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.++++++++ ++.
T Consensus 103 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~--~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~ 180 (211)
T cd03298 103 AEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVR--DKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKM 180 (211)
T ss_pred HHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 1223333444321111111122348899999999999 9999999999777667777888889999865 489
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|| +++||+++++.++||+++++..+..+
T Consensus 181 ti----i~~sH~~~~~~~~~d~i~~l~~G~i~ 208 (211)
T cd03298 181 TV----LMVTHQPEDAKRLAQRVVFLDNGRIA 208 (211)
T ss_pred EE----EEEecCHHHHHhhhCEEEEEECCEEe
Confidence 99 99999999999999999999988754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=196.89 Aligned_cols=163 Identities=20% Similarity=0.188 Sum_probs=126.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc-----ccccCCCCccCCcchhccHHHHHHHhCCCCCCchhh
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----AAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIY 76 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 76 (175)
||+++|+||+|||||||+++|+|...|.+|+|.++|.+. .++.++..+ +....|...++.++++++.....+.
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlF--QEnNLFaHLtV~qNigLGl~P~LkL 102 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLF--QENNLFAHLTVAQNIGLGLSPGLKL 102 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhh--hccccchhhhhhhhhcccCCccccc
Confidence 899999999999999999999999999999999999874 334444444 5556666667777776664321111
Q ss_pred -----------------------hHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH-hCC
Q 030566 77 -----------------------CMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRN 130 (175)
Q Consensus 77 -----------------------~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-~~g 130 (175)
-..++| ++||.+++|.+.+ +.|+++||||-....-.-++.+..++.+++ +++
T Consensus 103 ~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR--~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~ 180 (231)
T COG3840 103 NAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVR--EQPILLLDEPFSALDPALRAEMLALVSQLCDERK 180 (231)
T ss_pred CHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhc--cCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhC
Confidence 112333 8899999999999 999999999922222223446667888875 569
Q ss_pred CcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhhhccc
Q 030566 131 FNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYSFLF 172 (175)
Q Consensus 131 ~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (175)
.|+ +++||..+++...++++++++.|....|....-+|
T Consensus 181 ~Tl----lmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 181 MTL----LMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred CEE----EEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 999 99999999999999999999999999988766554
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-31 Score=203.58 Aligned_cols=157 Identities=14% Similarity=0.061 Sum_probs=115.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----ccCCCCc-------cCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYPV-------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~~-------~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~ 104 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPK 104 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCCH
Confidence 599999999999999999999999999999999999876421 1122222 123322221
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCC
Q 030566 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~ 131 (175)
..++++.+++..........-+..++|+..+++++.. +|++++||||....+......+.++++++++ +|.
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 182 (213)
T cd03301 105 DEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVR--EPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGT 182 (213)
T ss_pred HHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC
Confidence 1123334444321111111123348899999999999 9999999999777667777788889999875 489
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|| +++||+++++.+++++++++..+..+
T Consensus 183 tv----i~~sH~~~~~~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 183 TT----IYVTHDQVEAMTMADRIAVMNDGQIQ 210 (213)
T ss_pred EE----EEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 99 99999999999999999999887654
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-31 Score=199.17 Aligned_cols=143 Identities=22% Similarity=0.188 Sum_probs=113.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc---------ccCCCCccCCcchhccHHHHHHHhCCCCC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVAMDIRELISLEDVMEELGLGPN 71 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+ +....+...++.+++.+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~--q~~~~~~~~t~~~~l~~~-- 100 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVF--QDFALFPHLTVLENIALG-- 100 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEe--cCCccCCCCCHHHheeec--
Confidence 599999999999999999999999999999999999876432 1122332 222223233455555432
Q ss_pred CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CCcEEEEEeeeccchhhhhcC
Q 030566 72 GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTL 150 (175)
Q Consensus 72 ~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~ 150 (175)
-+..+++|..+++++.. +|++++||||....+...++.+.+++++++++ +.|+ +++||+.+++.++
T Consensus 101 -------lS~G~~qr~~la~al~~--~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~ti----ii~sH~~~~~~~~ 167 (178)
T cd03229 101 -------LSGGQQQRVALARALAM--DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITV----VLVTHDLDEAARL 167 (178)
T ss_pred -------CCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE----EEEeCCHHHHHHh
Confidence 23458999999999999 99999999997777777788888899998776 7899 9999999999999
Q ss_pred CCceeEeccc
Q 030566 151 PPCIVCFCCT 160 (175)
Q Consensus 151 ~~~~~~~~~~ 160 (175)
+|++++++.+
T Consensus 168 ~d~i~~l~~g 177 (178)
T cd03229 168 ADRVVVLRDG 177 (178)
T ss_pred cCEEEEEeCC
Confidence 9999999765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-31 Score=206.53 Aligned_cols=161 Identities=14% Similarity=0.095 Sum_probs=117.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----ccCCCCc-------cCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYPV-------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~~-------~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 106 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSE 106 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccc
Confidence 599999999999999999999999999999999999875421 1122221 222222221
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh
Q 030566 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS 128 (175)
Q Consensus 59 ----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~ 128 (175)
...+++.+++..........-+..++||..+++++.. +|++++||||....+......+.++++++++
T Consensus 107 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 184 (239)
T cd03296 107 RPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAV--EPKVLLLDEPFGALDAKVRKELRRWLRRLHD 184 (239)
T ss_pred cCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 1122334444321111111122348899999999999 9999999999666667777788889999876
Q ss_pred C-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 129 R-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 129 ~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+ |.|| +++||+++++..+||++++++.+..+..+.
T Consensus 185 ~~~~tv----ii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 220 (239)
T cd03296 185 ELHVTT----VFVTHDQEEALEVADRVVVMNKGRIEQVGT 220 (239)
T ss_pred HcCCEE----EEEeCCHHHHHHhCCEEEEEECCeEEEecC
Confidence 4 8999 999999999999999999998887654433
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=201.66 Aligned_cols=155 Identities=15% Similarity=0.160 Sum_probs=114.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCCCc-------cCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~ 105 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEV 105 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHH
Confidence 599999999999999999999999999999999999875421 1222222 223333221
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..+.++.+++..........-+..++|+..+++++.. +|++++||||+...+....+.+.+++++++
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~~~l~~~~ 183 (214)
T cd03292 106 TGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVN--SPTILIADEPTGNLDPDTTWEIMNLLKKIN 183 (214)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 1223344444322111111123348899999999999 999999999966666677778888999987
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccch
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
++|.|| +++||+.+++.++||+++++..|.
T Consensus 184 ~~~~ti----iivtH~~~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 184 KAGTTV----VVATHAKELVDTTRHRVIALERGK 213 (214)
T ss_pred HcCCEE----EEEeCCHHHHHHhCCEEEEEeCCc
Confidence 778999 999999999999999999998764
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-31 Score=205.27 Aligned_cols=161 Identities=12% Similarity=0.100 Sum_probs=119.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCCCc-------cCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++|.+ ..++.+++.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 109 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEI 109 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHH
Confidence 599999999999999999999999999999999999876421 1222222 223333321
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..+.++.+++..........-+..++++..++++++. +|++++||||....+......+.+++++++
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~~~l~~~~ 187 (233)
T cd03258 110 AGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN--NPKVLLCDEATSALDPETTQSILALLRDIN 187 (233)
T ss_pred cCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCCCcCCHHHHHHHHHHHHHHH
Confidence 1223444444322111111123348899999999999 999999999976666777778888999987
Q ss_pred hC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 128 SR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++ |.|| +++||+++++..++|+++++..|..+.+.+
T Consensus 188 ~~~~~tv----ii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 224 (233)
T cd03258 188 RELGLTI----VLITHEMEVVKRICDRVAVMEKGEVVEEGT 224 (233)
T ss_pred HHcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 65 8999 999999999999999999999888776554
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-31 Score=217.21 Aligned_cols=160 Identities=15% Similarity=0.086 Sum_probs=120.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----ccCC-------CCccCCcchhccH---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFD-------YPVAMDIRELISL--------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~-------~~~~~~~~~~~~~--------- 59 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.++ +.+.+++.+++.+
T Consensus 31 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~ 110 (351)
T PRK11432 31 QGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK 110 (351)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCH
Confidence 599999999999999999999999999999999999976421 2222 3334454444431
Q ss_pred -------HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CC
Q 030566 60 -------EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 60 -------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
.++++.+++..........-+..|+||..|+|+++. +|++++||||....+...+..+++.|++++++ |.
T Consensus 111 ~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~--~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 188 (351)
T PRK11432 111 EERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALIL--KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNI 188 (351)
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 234444455432222221223348999999999999 99999999996666666677888889988654 89
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
|+ +++||+.+++..++|++++|..|..+-++
T Consensus 189 ti----i~vTHd~~e~~~laD~i~vm~~G~i~~~g 219 (351)
T PRK11432 189 TS----LYVTHDQSEAFAVSDTVIVMNKGKIMQIG 219 (351)
T ss_pred EE----EEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99 99999999999999999999988765433
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=201.55 Aligned_cols=155 Identities=17% Similarity=0.175 Sum_probs=114.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc---------ccCCCCc-------cCCcchhcc------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPV-------AMDIRELIS------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------~~~~~~~-------~~~~~~~~~------ 58 (175)
+|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.++|.+ ..++.+++.
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~ 104 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV 104 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh
Confidence 599999999999999999999999999999999999875421 1222222 122222221
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.+++++++
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 182 (213)
T cd03262 105 KGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM--NPKVMLFDEPTSALDPELVGEVLDVMKDLA 182 (213)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 1223333444322111111123348899999999999 999999999966666677778888999987
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccch
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
++|.|| +++||+++++.++||+++++..+.
T Consensus 183 ~~~~tv----i~~sh~~~~~~~~~d~i~~l~~g~ 212 (213)
T cd03262 183 EEGMTM----VVVTHEMGFAREVADRVIFMDDGR 212 (213)
T ss_pred HcCCEE----EEEeCCHHHHHHhCCEEEEEeCCc
Confidence 778999 999999999999999999998764
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-31 Score=206.20 Aligned_cols=161 Identities=13% Similarity=0.122 Sum_probs=119.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc---------ccCCCCc-------cCCcchhcc------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPV-------AMDIRELIS------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------~~~~~~~-------~~~~~~~~~------ 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++|.+ ..++.+++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 105 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV 105 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh
Confidence 599999999999999999999999999999999999876421 1122222 223332221
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+...+..+.+++++++
T Consensus 106 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 183 (240)
T PRK09493 106 RGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAV--KPKLMLFDEPTSALDPELRHEVLKVMQDLA 183 (240)
T ss_pred cCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 1223444444322111111123348899999999999 999999999977766777788888999987
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++|.|+ +++||+++++..+||++++++.+..+.++.
T Consensus 184 ~~~~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 219 (240)
T PRK09493 184 EEGMTM----VIVTHEIGFAEKVASRLIFIDKGRIAEDGD 219 (240)
T ss_pred HcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEeeCC
Confidence 778999 999999999999999999999888776544
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-31 Score=217.70 Aligned_cols=160 Identities=14% Similarity=0.123 Sum_probs=122.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcccc--ceeEEeecCcc-----cccC-------CCCccCCcchhcc--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVR--RTMHIVNLDPA-----AENF-------DYPVAMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~--G~I~i~g~~~~-----~~~~-------~~~~~~~~~~~~~-------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++ |+|.++|.++. .+.+ .+.+.+++.+++.
T Consensus 30 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~ 109 (362)
T TIGR03258 30 AGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM 109 (362)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCC
Confidence 499999999999999999999999999999 99999987642 1222 2333445544442
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-
Q 030566 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR- 129 (175)
Q Consensus 59 --------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~- 129 (175)
..++++.+++..........-+..|+||.+|+|+++. +|++++||||....+...+..+++.|++++++
T Consensus 110 ~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~--~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 187 (362)
T TIGR03258 110 PKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAI--EPDVLLLDEPLSALDANIRANMREEIAALHEEL 187 (362)
T ss_pred CHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhC
Confidence 1234555565543322222223348999999999999 99999999996666666677888899988765
Q ss_pred -CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 130 -NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 130 -g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
|.|+ +++||+++++..++|++++|..|..+-++
T Consensus 188 ~g~ti----l~vTHd~~ea~~l~dri~vl~~G~i~~~g 221 (362)
T TIGR03258 188 PELTI----LCVTHDQDDALTLADKAGIMKDGRLAAHG 221 (362)
T ss_pred CCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 7899 99999999999999999999988765443
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=202.71 Aligned_cols=157 Identities=11% Similarity=0.062 Sum_probs=116.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCCCc-------cCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++|.+ ..++.+++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLII 106 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHh
Confidence 599999999999999999999999999999999999875421 1222222 223222221
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..+.++.+++..........-+..++|+..+++++.. +|++++||||....+...++.+.+++++++
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 184 (222)
T PRK10908 107 AGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVN--KPAVLLADEPTGNLDDALSEGILRLFEEFN 184 (222)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 1123344444322111111122348899999999999 999999999966666667778888999987
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+++.|+ +++||+++++..++|++++++.+..+
T Consensus 185 ~~~~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 185 RVGVTV----LMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HCCCEE----EEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 778899 99999999999999999999887654
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=202.99 Aligned_cols=160 Identities=16% Similarity=0.090 Sum_probs=118.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------ccCCCCc-------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYPV-------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~~-------~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 106 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLP 106 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCC
Confidence 599999999999999999999999999999999999876421 1122222 223333221
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCC
Q 030566 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
..++++.+++..........-+..++|+..++++++. +|++++||||....+....+.+.++++++++ +.
T Consensus 107 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~ 183 (220)
T cd03263 107 KSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIG--GPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GR 183 (220)
T ss_pred HHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhc--CCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CC
Confidence 1233444554322111111123348899999999999 9999999999666666777788889998865 58
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|| +++||+++++.++||+++++..+..+.+++
T Consensus 184 ti----i~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 215 (220)
T cd03263 184 SI----ILTTHSMDEAEALCDRIAIMSDGKLRCIGS 215 (220)
T ss_pred EE----EEEcCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99 999999999999999999999988765543
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-31 Score=205.69 Aligned_cols=161 Identities=16% Similarity=0.100 Sum_probs=117.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCCCc-------cCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 105 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLG 105 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcc
Confidence 599999999999999999999999999999999999876421 1222222 123322221
Q ss_pred -------------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 59 -------------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 -------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..++++.+++..........-+..++|+..+++++.. +|++++||||....+......+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l 183 (241)
T cd03256 106 RRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQ--QPKLILADEPVASLDPASSRQV 183 (241)
T ss_pred cchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHH
Confidence 1123333444321111111123348899999999999 9999999999666666777788
Q ss_pred HHHHHHHHh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 120 RNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.++++++++ +|.|| +++||+++++.++||+++++..|..+.+.+
T Consensus 184 ~~~l~~~~~~~~~ti----i~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 184 MDLLKRINREEGITV----IVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 889999865 48999 999999999999999999999887765543
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-31 Score=206.33 Aligned_cols=161 Identities=16% Similarity=0.153 Sum_probs=116.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCCCc-------cCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 106 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLG 106 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccc
Confidence 599999999999999999999999999999999999876421 1223322 122222211
Q ss_pred -------------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 59 -------------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 -------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..++++.+++..........-+..+++|..+++++.. +|++++||||....+......+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l 184 (243)
T TIGR02315 107 YKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQ--QPDLILADEPIASLDPKTSKQV 184 (243)
T ss_pred cccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 1122333333321111111122348899999999999 9999999999666666777788
Q ss_pred HHHHHHHHh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 120 RNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.++|+++++ .|.|| +++||+++++.++||++++++.|..+.+++
T Consensus 185 ~~~l~~~~~~~~~ti----ii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 185 MDYLKRINKEDGITV----IINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHcCCEE----EEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 889999865 48899 999999999999999999999887765543
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=202.89 Aligned_cols=157 Identities=17% Similarity=0.021 Sum_probs=117.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--ccCCCCccCCcchhcc----------------HHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELIS----------------LEDV 62 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--~~~~~~~~~~~~~~~~----------------~~~~ 62 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.+... ....+.+..++.+++. ..++
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 126 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEI 126 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 599999999999999999999999999999999999876431 1233444444444332 1223
Q ss_pred HHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeecc
Q 030566 63 MEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (175)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH 142 (175)
++.+++..........-+..++++..+++++.. +|+++|||||....+......+.+.+++++++|.|| +++||
T Consensus 127 l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~ti----ii~sH 200 (224)
T cd03220 127 IEFSELGDFIDLPVKTYSSGMKARLAFAIATAL--EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTV----ILVSH 200 (224)
T ss_pred HHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEE----EEEeC
Confidence 344454432222222223348999999999999 999999999966666666677888898887778899 99999
Q ss_pred chhhhhcCCCceeEeccchhh
Q 030566 143 VCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+.+++..++|+++++..+..+
T Consensus 201 ~~~~~~~~~d~i~~l~~G~i~ 221 (224)
T cd03220 201 DPSSIKRLCDRALVLEKGKIR 221 (224)
T ss_pred CHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999887643
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-31 Score=217.97 Aligned_cols=159 Identities=16% Similarity=0.073 Sum_probs=119.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----ccCC-------CCccCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFD-------YPVAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~-------~~~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.++ +.+.+++.+++.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~ 107 (369)
T PRK11000 28 EGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK 107 (369)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCH
Confidence 599999999999999999999999999999999999876421 1222 222334444332
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CC
Q 030566 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
..++++.+++..........-+..|+||..|+++++. +|++++||||....+...+..+.+.|++++++ |.
T Consensus 108 ~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~--~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~ 185 (369)
T PRK11000 108 EEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA--EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185 (369)
T ss_pred HHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 1234455555432222222223348999999999999 99999999996666666777888889988654 89
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
|+ +++||+++++..+||++++|..|..+..
T Consensus 186 tv----I~vTHd~~~~~~~~d~i~vl~~G~i~~~ 215 (369)
T PRK11000 186 TM----IYVTHDQVEAMTLADKIVVLDAGRVAQV 215 (369)
T ss_pred EE----EEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99 9999999999999999999998876543
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=215.91 Aligned_cols=159 Identities=13% Similarity=0.114 Sum_probs=119.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCCCc-------cCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 30 ~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~ 109 (343)
T PRK11153 30 AGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLEL 109 (343)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHH
Confidence 599999999999999999999999999999999999876421 1233222 223333322
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..|+||..++++++. +|++++||||+...+......+.++|++++
T Consensus 110 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~--~p~iLlLDEPts~LD~~~~~~l~~~L~~l~ 187 (343)
T PRK11153 110 AGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALAS--NPKVLLCDEATSALDPATTRSILELLKDIN 187 (343)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 1234455555432212211223348999999999999 999999999966666777778888999986
Q ss_pred hC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 128 SR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 128 ~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
++ |.|| +++||+++++.++||++++++.|..+..
T Consensus 188 ~~~g~ti----ilvtH~~~~i~~~~d~v~~l~~G~i~~~ 222 (343)
T PRK11153 188 RELGLTI----VLITHEMDVVKRICDRVAVIDAGRLVEQ 222 (343)
T ss_pred HhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 54 8999 9999999999999999999988876543
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=200.09 Aligned_cols=159 Identities=16% Similarity=0.101 Sum_probs=127.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCccCCcchhccHHHHHHHhCCCCCC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPVAMDIRELISLEDVMEELGLGPNG 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 72 (175)
+||+++|+|+||||||||+|+|+|+.++.+|+|.++|.|+.. ..++|+| +.++.|+..+|.||+.++...
T Consensus 28 ~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VP--egR~iF~~LTVeENL~~g~~~ 105 (237)
T COG0410 28 RGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVP--EGRRIFPRLTVEENLLLGAYA 105 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCc--ccccchhhCcHHHHHhhhhhc
Confidence 599999999999999999999999999999999999998643 3456777 888889888999988776322
Q ss_pred chh--------h---------------hHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 73 GLI--------Y---------------CMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 73 ~~~--------~---------------~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
... . ....+ .++|..+++|+++. +|++|+||||+...-..-...+.+.+++++
T Consensus 106 ~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~--~PklLLLDEPs~GLaP~iv~~I~~~i~~l~ 183 (237)
T COG0410 106 RRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMS--RPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183 (237)
T ss_pred ccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhc--CCCEEEecCCccCcCHHHHHHHHHHHHHHH
Confidence 110 0 00111 26788999999999 999999999944433333444556889998
Q ss_pred hC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 128 SR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++ |.|| +++-++...+.+++|+..+|.+|.++..++
T Consensus 184 ~~~g~tI----lLVEQn~~~Al~iaDr~yvle~Griv~~G~ 220 (237)
T COG0410 184 KEGGMTI----LLVEQNARFALEIADRGYVLENGRIVLSGT 220 (237)
T ss_pred HcCCcEE----EEEeccHHHHHHhhCEEEEEeCCEEEEecC
Confidence 65 7799 999999999999999999999999988765
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=217.65 Aligned_cols=160 Identities=13% Similarity=0.051 Sum_probs=120.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-----cccC-------CCCccCCcchhccH---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENF-------DYPVAMDIRELISL--------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----~~~~-------~~~~~~~~~~~~~~--------- 59 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++. .+.+ .+.+.+++.+++..
T Consensus 39 ~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~ 118 (375)
T PRK09452 39 NGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPA 118 (375)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCH
Confidence 59999999999999999999999999999999999997642 1222 33334455444321
Q ss_pred -------HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CC
Q 030566 60 -------EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 60 -------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
.++++.+++..........-+..|+||.+|+|+++. +|++++||||....+...+..+.+.|++++++ |.
T Consensus 119 ~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~--~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~ 196 (375)
T PRK09452 119 AEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVN--KPKVLLLDESLSALDYKLRKQMQNELKALQRKLGI 196 (375)
T ss_pred HHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC
Confidence 233444555432222221123348999999999999 99999999996666666677888899998654 89
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
|+ +++||+.+++..++|++++|..|..+-++
T Consensus 197 ti----I~vTHd~~ea~~laDri~vl~~G~i~~~g 227 (375)
T PRK09452 197 TF----VFVTHDQEEALTMSDRIVVMRDGRIEQDG 227 (375)
T ss_pred EE----EEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99 99999999999999999999998766443
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=195.99 Aligned_cols=142 Identities=18% Similarity=0.147 Sum_probs=113.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------ccCCCCccCCcchhccHHHHHHHhCCCCCCch
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYPVAMDIRELISLEDVMEELGLGPNGGL 74 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 74 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.+... ..+++.+ +....+...++.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~--q~~~~~~~~tv~~~~~------- 95 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP--EEPSLYENLTVRENLK------- 95 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe--cCCccccCCcHHHHhh-------
Confidence 599999999999999999999999999999999999976432 1223333 2222232234445442
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCce
Q 030566 75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCI 154 (175)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~ 154 (175)
-+..++++..++++++. +|++++||||....+....+.+.+++++++++|.|+ +++||+.+++.++++++
T Consensus 96 ----LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~ti----ii~th~~~~~~~~~d~i 165 (173)
T cd03230 96 ----LSGGMKQRLALAQALLH--DPELLILDEPTSGLDPESRREFWELLRELKKEGKTI----LLSSHILEEAERLCDRV 165 (173)
T ss_pred ----cCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEE----EEECCCHHHHHHhCCEE
Confidence 23358899999999999 999999999977777777888889999997778899 99999999999999999
Q ss_pred eEeccch
Q 030566 155 VCFCCTH 161 (175)
Q Consensus 155 ~~~~~~~ 161 (175)
+.++.+.
T Consensus 166 ~~l~~g~ 172 (173)
T cd03230 166 AILNNGR 172 (173)
T ss_pred EEEeCCC
Confidence 9998764
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=202.21 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=116.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCc-------cCCcchhccH------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELISL------ 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~~------ 59 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.+ .+++.+++..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~ 104 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR 104 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC
Confidence 599999999999999999999999999999999999875421 1233333 1222222210
Q ss_pred --------HHHHHHh-CCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCC
Q 030566 60 --------EDVMEEL-GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRN 130 (175)
Q Consensus 60 --------~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g 130 (175)
..+++.+ .+..........-+..++++..+++++.. +|++++||||....+....+.+.+++++++++|
T Consensus 105 ~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 182 (222)
T cd03224 105 RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMS--RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEG 182 (222)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhc--CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 1122222 12111111111112237899999999999 999999999977766777788888999987778
Q ss_pred CcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 131 FNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 131 ~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.|| +++||+++++.++|++++++..+..+.++
T Consensus 183 ~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 214 (222)
T cd03224 183 VTI----LLVEQNARFALEIADRAYVLERGRVVLEG 214 (222)
T ss_pred CEE----EEEeCCHHHHHHhccEEEEeeCCeEEEeC
Confidence 999 99999999999999999999988776543
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=215.28 Aligned_cols=160 Identities=15% Similarity=0.131 Sum_probs=118.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----ccCCCC-------ccCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYP-------VAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~-------~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.+++. +.+++.+++.
T Consensus 27 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~ 106 (353)
T PRK10851 27 SGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRE 106 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccccc
Confidence 499999999999999999999999999999999999976421 222222 2223322221
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh
Q 030566 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS 128 (175)
Q Consensus 59 ----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~ 128 (175)
..++++.+++..........-+..|+||..++|+++. +|++++||||....+...+..+.+.++++++
T Consensus 107 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~--~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 184 (353)
T PRK10851 107 RPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAV--EPQILLLDEPFGALDAQVRKELRRWLRQLHE 184 (353)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 1223444444332211111122348999999999999 9999999999666666677788889999876
Q ss_pred C-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 129 R-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 129 ~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+ |.|+ +++||+++++..++|++++|..|..+..+
T Consensus 185 ~~g~ti----i~vTHd~~ea~~~~Dri~vl~~G~i~~~g 219 (353)
T PRK10851 185 ELKFTS----VFVTHDQEEAMEVADRVVVMSQGNIEQAG 219 (353)
T ss_pred hcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 5 8999 99999999999999999999988765443
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-31 Score=198.50 Aligned_cols=146 Identities=18% Similarity=0.152 Sum_probs=116.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccc-------cCCCCccCCcchhccHHHHHHHhCCCCCCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDYPVAMDIRELISLEDVMEELGLGPNGG 73 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++... .+++.+ ++++.+++.....
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~-----------q~l~~~gl~~~~~ 92 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP-----------QALELLGLAHLAD 92 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH-----------HHHHHcCCHhHhc
Confidence 5999999999999999999999999999999999998765321 112221 2666666654322
Q ss_pred hhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CCcEEEEEeeeccchhhhhcCCC
Q 030566 74 LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPP 152 (175)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~ 152 (175)
.....-+..++++..+++++.. +|++++||||....+....+.+.+++++++++ +.|+ +++||+++++.+++|
T Consensus 93 ~~~~~LS~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~ti----ii~sh~~~~~~~~~d 166 (180)
T cd03214 93 RPFNELSGGERQRVLLARALAQ--EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTV----VMVLHDLNLAARYAD 166 (180)
T ss_pred CCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEE----EEEeCCHHHHHHhCC
Confidence 2222223448999999999999 99999999996666667777888899998766 8899 999999999999999
Q ss_pred ceeEeccchhh
Q 030566 153 CIVCFCCTHTV 163 (175)
Q Consensus 153 ~~~~~~~~~~~ 163 (175)
+++.+..+..+
T Consensus 167 ~~~~l~~g~i~ 177 (180)
T cd03214 167 RVILLKDGRIV 177 (180)
T ss_pred EEEEEECCEEE
Confidence 99999988654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=197.13 Aligned_cols=148 Identities=16% Similarity=0.100 Sum_probs=115.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCccCCc-chhccHHHHHHHhCCCCC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPVAMDI-RELISLEDVMEELGLGPN 71 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ 71 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.+.... ...+...++.+++.+...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~ 104 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL 104 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh
Confidence 499999999999999999999999999999999999976532 12333331100 112333456666543211
Q ss_pred CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCC
Q 030566 72 GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLP 151 (175)
Q Consensus 72 ~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~ 151 (175)
-+..++++..+++++.. +|++++||||....+....+.+.++++++++++.|+ +++||+++++.++|
T Consensus 105 -------LS~G~~qrl~la~al~~--~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~ti----ii~sh~~~~~~~~~ 171 (182)
T cd03215 105 -------LSGGNQQKVVLARWLAR--DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAV----LLISSELDELLGLC 171 (182)
T ss_pred -------cCHHHHHHHHHHHHHcc--CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEE----EEEeCCHHHHHHhC
Confidence 23458999999999999 999999999977777777888888999987778999 99999999999999
Q ss_pred CceeEeccch
Q 030566 152 PCIVCFCCTH 161 (175)
Q Consensus 152 ~~~~~~~~~~ 161 (175)
++++++..+.
T Consensus 172 d~v~~l~~G~ 181 (182)
T cd03215 172 DRILVMYEGR 181 (182)
T ss_pred CEEEEecCCc
Confidence 9999998764
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-31 Score=206.19 Aligned_cols=158 Identities=18% Similarity=0.120 Sum_probs=124.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc--------cccCCCCccCCcchhccHHHH----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDYPVAMDIRELISLEDV---------- 62 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~--------~~~~~~~~~~~~~~~~~~~~~---------- 62 (175)
+|++++|+|+||||||||+++++|+++|++|+|.++|.+.. .+.+++.+. ++.+++...++
T Consensus 29 ~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQ-npd~q~~~~tV~~evafg~~n 107 (235)
T COG1122 29 KGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQ-NPDDQLFGPTVEDEVAFGLEN 107 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEE-CcccccccCcHHHHHhhchhh
Confidence 59999999999999999999999999999999999998744 133444441 33333333333
Q ss_pred ---------------HHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHH
Q 030566 63 ---------------MEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 63 ---------------~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
++.+++.....+ ....+| |+||.++|..++. +|++++||||+...+..++..+.+++++
T Consensus 108 ~g~~~~e~~~rv~~~l~~vgl~~~~~r--~p~~LSGGqkqRvaIA~vLa~--~P~iliLDEPta~LD~~~~~~l~~~l~~ 183 (235)
T COG1122 108 LGLPREEIEERVAEALELVGLEELLDR--PPFNLSGGQKQRVAIAGVLAM--GPEILLLDEPTAGLDPKGRRELLELLKK 183 (235)
T ss_pred cCCCHHHHHHHHHHHHHHcCchhhccC--CccccCCcceeeHHhhHHHHc--CCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 444444333211 223334 7888999999999 9999999999888888888899999999
Q ss_pred HHhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 126 LKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 126 l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++++ |+|+ +++||+++++.+++|++++|+.|..+.+++
T Consensus 184 L~~~~~~ti----i~~tHd~~~~~~~ad~v~vl~~G~i~~~g~ 222 (235)
T COG1122 184 LKEEGGKTI----IIVTHDLELVLEYADRVVVLDDGKILADGD 222 (235)
T ss_pred HHhcCCCeE----EEEeCcHHHHHhhCCEEEEEECCEEeecCC
Confidence 9877 6899 999999999999999999999999888876
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=210.59 Aligned_cols=160 Identities=11% Similarity=0.045 Sum_probs=118.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCCCCcc--------CCcchhcc---
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPVA--------MDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~~--------~~~~~~~~--- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+. .++.+++.
T Consensus 32 ~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 111 (287)
T PRK13641 32 EGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGP 111 (287)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHH
Confidence 599999999999999999999999999999999999976421 12233321 12222221
Q ss_pred -------------HHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHH
Q 030566 59 -------------LEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 -------------~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..++++.+++.. ........-+..++||..|+++++. +|++++||||+...+......+.++++
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~--~p~lLlLDEPt~gLD~~~~~~l~~~l~ 189 (287)
T PRK13641 112 KNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAY--EPEILCLDEPAAGLDPEGRKEMMQLFK 189 (287)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 122334444431 1111111223348999999999999 999999999966666777788888999
Q ss_pred HHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 125 HLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 125 ~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++++|.|| +++||+++++..+||+++++..+..+.++
T Consensus 190 ~l~~~g~tv----livsH~~~~~~~~~d~v~~l~~G~i~~~g 227 (287)
T PRK13641 190 DYQKAGHTV----ILVTHNMDDVAEYADDVLVLEHGKLIKHA 227 (287)
T ss_pred HHHhCCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 987779999 99999999999999999999988766443
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=209.21 Aligned_cols=161 Identities=14% Similarity=0.124 Sum_probs=119.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCcc--------CCcchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA--------MDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~--------~~~~~~~~------- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.+. .++.+++.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 109 (274)
T PRK13647 30 EGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMG 109 (274)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcC
Confidence 599999999999999999999999999999999999976531 12333321 12222221
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC
Q 030566 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
...+++.+++..........-+.+++||..++++++. +|++++||||+...+......+.+++++++++
T Consensus 110 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 187 (274)
T PRK13647 110 LDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAM--DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ 187 (274)
T ss_pred CCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC
Confidence 1223333444322111111223348899999999999 99999999997776777788888899998777
Q ss_pred CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|.|| +++||+++++.++||+++++..|..+.+++
T Consensus 188 g~ti----li~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 221 (274)
T PRK13647 188 GKTV----IVATHDVDLAAEWADQVIVLKEGRVLAEGD 221 (274)
T ss_pred CCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 8999 999999999999999999999988765544
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=201.12 Aligned_cols=155 Identities=14% Similarity=0.065 Sum_probs=113.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCCCCc-------cCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPV-------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~-------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..++|.+ ..++.+++.
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 109 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLL 109 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHH
Confidence 599999999999999999999999999999999999875421 1233222 223333221
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..++|+..++++++. +|++++||||....+......+.++++++
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~~~l~~~ 187 (221)
T TIGR02211 110 IGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVN--QPSLVLADEPTGNLDNNNAKIIFDLMLEL 187 (221)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 1233444444322211111123348899999999999 99999999997776677777888899998
Q ss_pred Hh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchh
Q 030566 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHT 162 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~ 162 (175)
++ .+.|| +++||+++++.. +|+++++..+..
T Consensus 188 ~~~~~~ti----i~~tH~~~~~~~-~d~v~~l~~G~i 219 (221)
T TIGR02211 188 NRELNTSF----LVVTHDLELAKK-LDRVLEMKDGQL 219 (221)
T ss_pred HHhcCCEE----EEEeCCHHHHhh-cCEEEEEeCCEe
Confidence 65 48899 999999999865 799999988754
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=203.91 Aligned_cols=163 Identities=18% Similarity=0.159 Sum_probs=120.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-------------cccCCCCc-------cCCcchhcc--
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------------AENFDYPV-------AMDIRELIS-- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-------------~~~~~~~~-------~~~~~~~~~-- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++. ...++|.+ ..++.+++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~ 106 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEA 106 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHH
Confidence 59999999999999999999999999999999999987531 11223322 223333321
Q ss_pred ---------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
..+.++.+++..........-+..++++..+++++.. +|++++||||....+......+.+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~--~p~llilDEPt~~LD~~~~~~l~~~l 184 (242)
T PRK11124 107 PCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMM--EPQVLLFDEPTAALDPEITAQIVSII 184 (242)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCcCCHHHHHHHHHHH
Confidence 1223344444322211111123348999999999999 99999999996666667777888899
Q ss_pred HHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhhh
Q 030566 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYS 169 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (175)
++++++|.|+ +++||+.+++.+++|+++++..+..+.+.++.
T Consensus 185 ~~~~~~~~ti----i~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~ 226 (242)
T PRK11124 185 RELAETGITQ----VIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHHHcCCEE----EEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9987778999 99999999999999999999988877665543
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=218.70 Aligned_cols=161 Identities=17% Similarity=0.159 Sum_probs=121.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc---------------ccCCCCccCCcchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------------~~~~~~~~~~~~~~~~------- 58 (175)
+|||++|+|.||||||||+|+|+|.++|++|+|.++|++... |+....+.+++.+++.
T Consensus 33 ~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~ 112 (500)
T COG1129 33 PGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTR 112 (500)
T ss_pred CceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhccccccc
Confidence 599999999999999999999999999999999999986431 3344455555444442
Q ss_pred -------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHH
Q 030566 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 59 -------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
...+++.+++..........-+..++|-..++|++.. +++++|||||+...-....+.+.+++++
T Consensus 113 ~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~--~arllIlDEPTaaLt~~E~~~Lf~~ir~ 190 (500)
T COG1129 113 RFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSF--DARVLILDEPTAALTVKETERLFDLIRR 190 (500)
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 1334444544311111111223348888999999999 9999999999555445555667779999
Q ss_pred HHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 126 LKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 126 l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++++|.+| +++||+++|+.++||++++|.-|..+-...
T Consensus 191 Lk~~Gv~i----i~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 191 LKAQGVAI----IYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHhCCCEE----EEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99999999 999999999999999999999887665433
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=210.48 Aligned_cols=163 Identities=14% Similarity=0.064 Sum_probs=121.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCCCCcc--------CCcchhcc---
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPVA--------MDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~~--------~~~~~~~~--- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|+++|.++.. ..+++.+. .++.+++.
T Consensus 31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~ 110 (288)
T PRK13643 31 KGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGP 110 (288)
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHH
Confidence 599999999999999999999999999999999999976421 12233321 12222221
Q ss_pred -------------HHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHH
Q 030566 59 -------------LEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 -------------~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..++++.+++.. ........-+..++||..++++++. +|++++||||+...+...+..+.++++
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~--~p~illLDEPt~gLD~~~~~~l~~~l~ 188 (288)
T PRK13643 111 QNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAM--EPEVLVLDEPTAGLDPKARIEMMQLFE 188 (288)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHh--CCCEEEEECCccCCCHHHHHHHHHHHH
Confidence 122334445431 1111111123348999999999999 999999999966666777778888999
Q ss_pred HHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhhh
Q 030566 125 HLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYS 169 (175)
Q Consensus 125 ~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (175)
+++++|.|| +++||+++++..+||++++|..+..+.+++..
T Consensus 189 ~l~~~g~ti----l~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~ 229 (288)
T PRK13643 189 SIHQSGQTV----VLVTHLMDDVADYADYVYLLEKGHIISCGTPS 229 (288)
T ss_pred HHHHCCCEE----EEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 987779999 99999999999999999999999887766543
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=206.01 Aligned_cols=160 Identities=14% Similarity=0.060 Sum_probs=119.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc---------ccCCCCccCCcchhcc----------HHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVAMDIRELIS----------LED 61 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------~~~~~~~~~~~~~~~~----------~~~ 61 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.+... +...+.+..++.+++. ..+
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~ 116 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQ 116 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHH
Confidence 599999999999999999999999999999999998765311 1112222234443332 123
Q ss_pred HHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCCcEEEEEeee
Q 030566 62 VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLD 140 (175)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvli~~l~~ 140 (175)
+++.+++..........-+..++|+..+++++.. +|++++||||....+......+.++|+++.+ ++.|| +++
T Consensus 117 ~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~--~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tv----iiv 190 (257)
T PRK11247 117 ALAAVGLADRANEWPAALSGGQKQRVALARALIH--RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTV----LLV 190 (257)
T ss_pred HHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEE----EEE
Confidence 4555565432222222223348999999999999 9999999999666666677788888988754 58999 999
Q ss_pred ccchhhhhcCCCceeEeccchhhHHh
Q 030566 141 SQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 141 sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
||+++++.++||+++++..+..+.+.
T Consensus 191 sHd~~~~~~~~d~i~~l~~G~i~~~~ 216 (257)
T PRK11247 191 THDVSEAVAMADRVLLIEEGKIGLDL 216 (257)
T ss_pred eCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999988776543
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=204.61 Aligned_cols=153 Identities=13% Similarity=0.084 Sum_probs=113.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccc--cCCC-------CccCCcchhcc-------------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--NFDY-------PVAMDIRELIS------------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~--~~~~-------~~~~~~~~~~~------------- 58 (175)
+|++++|+||||||||||+|+|+|+.+|++|+|.++|.++... ..++ .+..++.+++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 105 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQR 105 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHH
Confidence 5999999999999999999999999999999999998764211 1121 22223333221
Q ss_pred ---HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH-hCCCcEE
Q 030566 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVC 134 (175)
Q Consensus 59 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-~~g~tvl 134 (175)
..++++.+++..........-+..+++|..+++++.. +|+++|||||+...+......+.++|++++ ++|.||
T Consensus 106 ~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tv- 182 (255)
T PRK11248 106 LEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAA--NPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQV- 182 (255)
T ss_pred HHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEE-
Confidence 1234455555432211111123348999999999999 999999999977777777888888999984 458999
Q ss_pred EEEeeeccchhhhhcCCCceeEecc
Q 030566 135 AVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 135 i~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
+++||+++++..+||+++++..
T Consensus 183 ---iivsH~~~~~~~~~d~i~~l~~ 204 (255)
T PRK11248 183 ---LLITHDIEEAVFMATELVLLSP 204 (255)
T ss_pred ---EEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999973
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=203.53 Aligned_cols=159 Identities=20% Similarity=0.182 Sum_probs=118.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc-------cCCcchhcc--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV-------AMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~-------~~~~~~~~~-------- 58 (175)
+|++++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..++|.+ ..++.+++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 105 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKW 105 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCC
Confidence 599999999999999999999999999999999999875421 1222222 223333321
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh
Q 030566 59 --------LEDVMEELGLGPNGGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS 128 (175)
Q Consensus 59 --------~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~ 128 (175)
..++++.+++............+ .++|+..+++++.. +|++++||||....+....+.+.+.++++++
T Consensus 106 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~~~L~~~~~ 183 (242)
T cd03295 106 PKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAA--DPPLLLMDEPFGALDPITRDQLQEEFKRLQQ 183 (242)
T ss_pred CHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 12344555554300011122333 48999999999999 9999999999666667777788889999876
Q ss_pred C-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 129 R-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 129 ~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+ |.|| +++||+.+++.+++|+++++..|..+..
T Consensus 184 ~~g~tv----ii~sH~~~~~~~~~d~i~~l~~G~i~~~ 217 (242)
T cd03295 184 ELGKTI----VFVTHDIDEAFRLADRIAIMKNGEIVQV 217 (242)
T ss_pred HcCCEE----EEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 4 8999 9999999999999999999998877643
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=209.51 Aligned_cols=160 Identities=18% Similarity=0.112 Sum_probs=120.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc---------ccCCCCcc--------CCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVA--------MDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------~~~~~~~~--------~~~~~~~~----- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++|.+. .++.+++.
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 111 (287)
T PRK13637 32 DGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN 111 (287)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHH
Confidence 599999999999999999999999999999999999976432 12233221 13333221
Q ss_pred -----------HHHHHHHhCCC--CCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHH
Q 030566 59 -----------LEDVMEELGLG--PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 59 -----------~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
...+++.+++. .........-+..++||..++++++. +|++++||||+...+...+..+.+++++
T Consensus 112 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~--~P~llllDEPt~gLD~~~~~~l~~~l~~ 189 (287)
T PRK13637 112 LGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM--EPKILILDEPTAGLDPKGRDEILNKIKE 189 (287)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc--CCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 13445556664 11212222223458999999999999 9999999999777667778888889999
Q ss_pred HHhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 126 LKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 126 l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++++ |.|| +++||+++++..+||+++++..|..+.++
T Consensus 190 l~~~~g~tv----i~vtHd~~~~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 190 LHKEYNMTI----ILVSHSMEDVAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 8764 8999 99999999999999999999888766543
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=204.91 Aligned_cols=161 Identities=16% Similarity=0.105 Sum_probs=116.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCc-------cCCcchhccH------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELISL------ 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~~------ 59 (175)
+|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.+.+ .+++.+++..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 109 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQL 109 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccc
Confidence 599999999999999999999999999999999999976421 1122222 1222222110
Q ss_pred -------------------------HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccc
Q 030566 60 -------------------------EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFT 114 (175)
Q Consensus 60 -------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~ 114 (175)
.+.++.+++..........-+..+++|..+++++.. +|++++||||....+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~ 187 (255)
T PRK11300 110 KTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVT--QPEILMLDEPAAGLNPK 187 (255)
T ss_pred cchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHH
Confidence 112223333221111111122348899999999999 99999999996666677
Q ss_pred cchHHHHHHHHHHhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 115 HVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 115 ~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.+..+.++|.+++++ |.|| +++||+++++.++||+++++..+..+..++
T Consensus 188 ~~~~l~~~L~~~~~~~~~ti----i~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 237 (255)
T PRK11300 188 ETKELDELIAELRNEHNVTV----LLIEHDMKLVMGISDRIYVVNQGTPLANGT 237 (255)
T ss_pred HHHHHHHHHHHHHhhcCCEE----EEEeCCHHHHHHhCCEEEEEECCeEEecCC
Confidence 777888899998765 8999 999999999999999999999888765433
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=199.11 Aligned_cols=154 Identities=16% Similarity=0.182 Sum_probs=112.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc--cccCCCCc---------cCCcchhcc-----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPV---------AMDIRELIS----------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~--~~~~~~~~---------~~~~~~~~~----------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++. ...++|.+ ..++.+++.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~ 103 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFR 103 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhcccccccccc
Confidence 59999999999999999999999999999999999997642 11222222 112222211
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC
Q 030566 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
..++++.+++..........-+..++|+..+++++.. +|++++||||+...+...+..+.+++++++++
T Consensus 104 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 181 (213)
T cd03235 104 RLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQ--DPDLLLLDEPFAGVDPKTQEDIYELLRELRRE 181 (213)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc
Confidence 1223334444321111111122348899999999999 99999999997776677777888899998777
Q ss_pred CCcEEEEEeeeccchhhhhcCCCceeEeccc
Q 030566 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
|.|| +++||+++++.++||+++++..+
T Consensus 182 ~~tv----i~~sH~~~~~~~~~d~i~~l~~~ 208 (213)
T cd03235 182 GMTI----LVVTHDLGLVLEYFDRVLLLNRT 208 (213)
T ss_pred CCEE----EEEeCCHHHHHHhcCEEEEEcCc
Confidence 8999 99999999999999999999764
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=214.59 Aligned_cols=159 Identities=17% Similarity=0.055 Sum_probs=119.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCCC-------CccCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~-------~~~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++ .+.+++.+++.
T Consensus 18 ~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~ 97 (363)
T TIGR01186 18 KGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPE 97 (363)
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 599999999999999999999999999999999999976431 22332 33345544432
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..|+||..++|++.. +|++++||||....+...+..+.+.+.++
T Consensus 98 ~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~--~p~iLLlDEP~saLD~~~r~~l~~~l~~l 175 (363)
T TIGR01186 98 LLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAA--EPDILLMDEAFSALDPLIRDSMQDELKKL 175 (363)
T ss_pred HcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 1234555555432222221223348999999999999 99999999995555555666777888888
Q ss_pred Hh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
++ .|+|| +++||+++++.++||++++|..|..+..
T Consensus 176 ~~~~~~Ti----i~vTHd~~ea~~~~drI~vl~~G~iv~~ 211 (363)
T TIGR01186 176 QATLQKTI----VFITHDLDEAIRIGDRIVIMKAGEIVQV 211 (363)
T ss_pred HHhcCCEE----EEEeCCHHHHHHhCCEEEEEeCCEEEee
Confidence 65 48999 9999999999999999999998876543
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=202.70 Aligned_cols=160 Identities=14% Similarity=0.169 Sum_probs=118.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCc-------cCCcchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+ .+++.+++.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~ 106 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDK 106 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccc
Confidence 599999999999999999999999999999999999976421 1122222 223332221
Q ss_pred -----------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHH
Q 030566 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN 121 (175)
Q Consensus 59 -----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~ 121 (175)
..+.++.+++..........-+..++++..++++++. +|++++||||....+....+.+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~--~p~~lllDEPt~~LD~~~~~~l~~ 184 (242)
T TIGR03411 107 SVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQ--DPKLLLLDEPVAGMTDEETEKTAE 184 (242)
T ss_pred ccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCccCCCHHHHHHHHH
Confidence 1223344444432211221223348899999999999 999999999966666777778888
Q ss_pred HHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 122 FVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 122 ~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++++++ +.|| +++||+++++.++||+++++..+..+.+++
T Consensus 185 ~l~~~~~-~~ti----i~~sH~~~~~~~~~d~i~~l~~g~~~~~~~ 225 (242)
T TIGR03411 185 LLKSLAG-KHSV----VVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225 (242)
T ss_pred HHHHHhc-CCEE----EEEECCHHHHHHhCCEEEEEECCeEEeeCC
Confidence 9999865 6899 999999999999999999999888776554
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=200.52 Aligned_cols=160 Identities=17% Similarity=0.122 Sum_probs=119.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc---ccCCCC-------ccCCcchhcc------------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDYP-------VAMDIRELIS------------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---~~~~~~-------~~~~~~~~~~------------ 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+++. +..++.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~ 104 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSR 104 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHH
Confidence 599999999999999999999999999999999999875421 112222 1223333321
Q ss_pred HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEe
Q 030566 59 LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (175)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l 138 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.+++++++++|.|| +
T Consensus 105 ~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~--~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~ti----i 178 (223)
T TIGR03740 105 IDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLN--HPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITV----I 178 (223)
T ss_pred HHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhc--CCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEE----E
Confidence 1234455555432211111122338899999999999 999999999977777777888888999987778999 9
Q ss_pred eeccchhhhhcCCCceeEeccchhhHHh
Q 030566 139 LDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++||+.+++.++|++++.+..+..+.++
T Consensus 179 i~sH~~~~~~~~~d~i~~l~~g~i~~~~ 206 (223)
T TIGR03740 179 LSSHILSEVQQLADHIGIISEGVLGYQG 206 (223)
T ss_pred EEcCCHHHHHHhcCEEEEEeCCEEEEec
Confidence 9999999999999999999888765544
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-31 Score=205.54 Aligned_cols=161 Identities=19% Similarity=0.134 Sum_probs=127.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccccc------CCCCccC--C------cchhcc--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAEN------FDYPVAM--D------IRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~------~~~~~~~--~------~~~~~~-------- 58 (175)
+|+++|++|+|||||||++|+++|++.|++|.|.++|++|..++ +++.... + ..+-+.
T Consensus 49 ~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~I 128 (325)
T COG4586 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEI 128 (325)
T ss_pred CCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhC
Confidence 59999999999999999999999999999999999999885522 1111110 0 011111
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH-hC
Q 030566 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SR 129 (175)
Q Consensus 59 --------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-~~ 129 (175)
.....+.+++.....+....-++.|+.|.-|+.++.+ +|++++||||+...+-..++.+++++++.+ ++
T Consensus 129 pd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh--~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~ 206 (325)
T COG4586 129 PDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLH--PPKVLFLDEPTVGLDVNAQANIREFLKEYNEER 206 (325)
T ss_pred CHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcC--CCcEEEecCCccCcchhHHHHHHHHHHHHHHhh
Confidence 2334455666655555555556679999999999999 999999999977777778888999999986 46
Q ss_pred CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+.|| +++||++.++..+|+++++++.|..++.++
T Consensus 207 ~aTV----llTTH~~~di~~lc~rv~~I~~Gqlv~dg~ 240 (325)
T COG4586 207 QATV----LLTTHIFDDIATLCDRVLLIDQGQLVFDGT 240 (325)
T ss_pred CceE----EEEecchhhHHHhhhheEEeeCCcEeeccc
Confidence 9999 999999999999999999999999988643
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=204.01 Aligned_cols=160 Identities=16% Similarity=0.133 Sum_probs=118.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc---------------ccCCCC-------ccCCcchhcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYP-------VAMDIRELIS 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------------~~~~~~-------~~~~~~~~~~ 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++. +..++.+++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 107 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENII 107 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHH
Confidence 599999999999999999999999999999999998865321 112222 1223333221
Q ss_pred -----------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHH
Q 030566 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN 121 (175)
Q Consensus 59 -----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~ 121 (175)
..++++.+++..........-+..++||..+++++.. +|++++||||+...+...+..+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~~ 185 (250)
T PRK11264 108 EGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM--RPEVILFDEPTSALDPELVGEVLN 185 (250)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHHH
Confidence 1223444454322111111123348999999999999 999999999977666777788888
Q ss_pred HHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 122 FVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 122 ~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++++++++|.|| +++||+++++.++||+++++..+..+...
T Consensus 186 ~l~~~~~~~~tv----i~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 226 (250)
T PRK11264 186 TIRQLAQEKRTM----VIVTHEMSFARDVADRAIFMDQGRIVEQG 226 (250)
T ss_pred HHHHHHhcCCEE----EEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 999987778999 99999999999999999999988766543
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=192.09 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=123.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCCC-------ccCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYP-------VAMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~-------~~~~~~~~~~----- 58 (175)
+||++.|+||||||||||+|.|++..+|++|+|+++|.++.. +.++.+ +..++++++.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v 106 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV 106 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhc
Confidence 699999999999999999999999999999999999987532 223333 2334444443
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..+.......-+..++||..+||++.+ +|++|+.|||+...+-.....+++++.+++
T Consensus 107 ~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~--~P~vLlADEPTGNLDp~~s~~im~lfeein 184 (223)
T COG2884 107 IGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN--QPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184 (223)
T ss_pred cCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc--CCCeEeecCCCCCCChHHHHHHHHHHHHHh
Confidence 2345555665544322222223348999999999999 999999999977766776777888999999
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
..|.|| +++||+.+.+.++-.+++.++.|..++
T Consensus 185 r~GtTV----l~ATHd~~lv~~~~~rvl~l~~Grl~~ 217 (223)
T COG2884 185 RLGTTV----LMATHDLELVNRMRHRVLALEDGRLVR 217 (223)
T ss_pred hcCcEE----EEEeccHHHHHhccCcEEEEeCCEEEe
Confidence 999999 999999999999999999998887654
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=203.58 Aligned_cols=157 Identities=14% Similarity=0.100 Sum_probs=116.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc--cccCCCCccCCcchhcc------------HHHHHHHh
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS------------LEDVMEEL 66 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~--~~~~~~~~~~~~~~~~~------------~~~~~~~~ 66 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|..+. .+.....+..++.+++. ..++++.+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l 103 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPL 103 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHc
Confidence 48999999999999999999999999999999999885321 12222222334444332 12344555
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCCcEEEEEeeeccchh
Q 030566 67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQVCI 145 (175)
Q Consensus 67 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~ 145 (175)
++..........-+..++|+..++++++. +|++++||||+...+...+..+.++++++++ .+.|| +++||+++
T Consensus 104 ~l~~~~~~~~~~LSgGe~qrv~iaraL~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti----iivsHd~~ 177 (246)
T cd03237 104 QIEQILDREVPELSGGELQRVAIAACLSK--DADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTA----FVVEHDII 177 (246)
T ss_pred CCHHHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE----EEEeCCHH
Confidence 55322111111123348999999999999 9999999999777667777788889999865 48999 99999999
Q ss_pred hhhcCCCceeEeccchhh
Q 030566 146 RFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~ 163 (175)
++..+||+++++.....+
T Consensus 178 ~~~~~~d~i~~l~~~~~~ 195 (246)
T cd03237 178 MIDYLADRLIVFEGEPSV 195 (246)
T ss_pred HHHHhCCEEEEEcCCCee
Confidence 999999999999776544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=207.63 Aligned_cols=159 Identities=18% Similarity=0.051 Sum_probs=117.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCCCCc-------cCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPV-------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~-------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 128 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 128 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHH
Confidence 599999999999999999999999999999999999875421 1222222 223333321
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..++|+..+++++.. +|+++|||||....+....+.+.++++++
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~--~p~illLDEPt~~LD~~~~~~l~~~l~~~ 206 (269)
T cd03294 129 VQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAV--DPDILLMDEAFSALDPLIRREMQDELLRL 206 (269)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 1233444454322111111123348999999999999 99999999997776677777888899998
Q ss_pred Hh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
++ +|.|| +++||+++++.++||+++++..|..+.+
T Consensus 207 ~~~~g~ti----ii~tH~~~~~~~~~d~v~~l~~G~i~~~ 242 (269)
T cd03294 207 QAELQKTI----VFITHDLDEALRLGDRIAIMKDGRLVQV 242 (269)
T ss_pred HHhcCCEE----EEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 65 48999 9999999999999999999988776543
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=201.36 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=115.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------ccCCCCc-------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYPV-------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~~-------~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~ 105 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLS 105 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCC
Confidence 599999999999999999999999999999999999875421 1122222 223332221
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CC
Q 030566 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RN 130 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g 130 (175)
..++++.+++..........-+.+++||..++++++. +|++++||||....+....+.+.++++++++ +|
T Consensus 106 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 183 (236)
T TIGR03864 106 RAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLH--RPALLLLDEPTVGLDPASRAAIVAHVRALCRDQG 183 (236)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCC
Confidence 1233444444332211111223348999999999999 9999999999777667777788889999864 58
Q ss_pred CcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 131 FNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 131 ~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
.|+ +++||+++++.. ||+++++..+..+..
T Consensus 184 ~ti----ii~sH~~~~~~~-~d~i~~l~~G~i~~~ 213 (236)
T TIGR03864 184 LSV----LWATHLVDEIEA-DDRLVVLHRGRVLAD 213 (236)
T ss_pred CEE----EEEecChhhHhh-CCEEEEEeCCeEEEe
Confidence 999 999999999975 999999988776544
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=202.21 Aligned_cols=161 Identities=14% Similarity=0.141 Sum_probs=116.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCc-------cCCcchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 107 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD 107 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc
Confidence 599999999999999999999999999999999999875421 1223322 112222211
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh
Q 030566 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS 128 (175)
Q Consensus 59 ----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~ 128 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+......+.++++++++
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 185 (241)
T PRK10895 108 DLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAA--NPKFILLDEPFAGVDPISVIDIKRIIEHLRD 185 (241)
T ss_pred ccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHh
Confidence 1122333333221111111112238899999999999 9999999999666666667778888988877
Q ss_pred CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 129 RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 129 ~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+|.|| +++||+++++.++||+++.++.+..+.+++
T Consensus 186 ~g~ti----ii~sH~~~~~~~~~d~v~~l~~G~i~~~~~ 220 (241)
T PRK10895 186 SGLGV----LITDHNVRETLAVCERAYIVSQGHLIAHGT 220 (241)
T ss_pred cCCEE----EEEEcCHHHHHHhcCEEEEEeCCeEEeeCC
Confidence 78999 999999999999999999999887765544
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=213.49 Aligned_cols=159 Identities=13% Similarity=0.107 Sum_probs=119.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCCCC-------ccCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYP-------VAMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~-------~~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++. +.+++.+++.
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 102 (352)
T PRK11144 23 AQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA 102 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh
Confidence 599999999999999999999999999999999999865321 122222 2234444332
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CC
Q 030566 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
..++++.+++..........-+..++||..++++++. +|++++||||....+...++.+.+.|++++++ |.
T Consensus 103 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~--~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~ 180 (352)
T PRK11144 103 KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLT--APELLLMDEPLASLDLPRKRELLPYLERLAREINI 180 (352)
T ss_pred hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 2345555666432222222223348999999999999 99999999996666666677888899988665 89
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
|+ +++||+++++..++|+++++..+..+.+
T Consensus 181 ti----i~vTHd~~~~~~~~d~i~~l~~G~i~~~ 210 (352)
T PRK11144 181 PI----LYVSHSLDEILRLADRVVVLEQGKVKAF 210 (352)
T ss_pred eE----EEEecCHHHHHHhCCEEEEEeCCEEEEe
Confidence 99 9999999999999999999988876543
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=209.96 Aligned_cols=160 Identities=19% Similarity=0.109 Sum_probs=119.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-------------------------------cccCCCCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------------------------------AENFDYPV 49 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-------------------------------~~~~~~~~ 49 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.+.. .+.+++.+
T Consensus 32 ~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~ 111 (305)
T PRK13651 32 QGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVF 111 (305)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEe
Confidence 59999999999999999999999999999999999875421 11223333
Q ss_pred c--------CCcchhcc----------------HHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEE
Q 030566 50 A--------MDIRELIS----------------LEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVF 104 (175)
Q Consensus 50 ~--------~~~~~~~~----------------~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliL 104 (175)
. .++.+++. ..++++.+++.. ........-+.+++|+..++++++. +|+++||
T Consensus 112 Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~--~P~lLlL 189 (305)
T PRK13651 112 QFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAM--EPDFLVF 189 (305)
T ss_pred eCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHh--CCCEEEE
Confidence 1 12222221 133455555532 1111122223348999999999999 9999999
Q ss_pred eCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 105 DCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 105 DEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
|||+...+......+.+++++++++|.|| +++||+++++.++||+++++..|..+.++
T Consensus 190 DEPt~~LD~~~~~~l~~~l~~l~~~g~ti----iivtHd~~~~~~~adrv~vl~~G~i~~~g 247 (305)
T PRK13651 190 DEPTAGLDPQGVKEILEIFDNLNKQGKTI----ILVTHDLDNVLEWTKRTIFFKDGKIIKDG 247 (305)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEE----EEEeeCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99977777777888888999998779999 99999999999999999999998876554
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=193.09 Aligned_cols=139 Identities=19% Similarity=0.174 Sum_probs=111.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCCCCCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNGG 73 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.+... ..+++.+ +....+. .++.+++
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~--q~~~~~~-~tv~~~l------- 96 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLP--QDDELFS-GSIAENI------- 96 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEEC--CCCcccc-CcHHHHC-------
Confidence 599999999999999999999999999999999999876422 1233333 2222333 2555554
Q ss_pred hhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCc
Q 030566 74 LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPC 153 (175)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~ 153 (175)
-+..++||..++++++. +|++++||||....+...+..+.+++++++++|.|+ +++||+++++ +.||+
T Consensus 97 -----LS~G~~qrv~la~al~~--~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti----i~~sh~~~~~-~~~d~ 164 (173)
T cd03246 97 -----LSGGQRQRLGLARALYG--NPRILVLDEPNSHLDVEGERALNQAIAALKAAGATR----IVIAHRPETL-ASADR 164 (173)
T ss_pred -----cCHHHHHHHHHHHHHhc--CCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEE----EEEeCCHHHH-HhCCE
Confidence 23458999999999999 999999999966666777778888999987778999 9999999988 57999
Q ss_pred eeEeccch
Q 030566 154 IVCFCCTH 161 (175)
Q Consensus 154 ~~~~~~~~ 161 (175)
++.+..+.
T Consensus 165 v~~l~~G~ 172 (173)
T cd03246 165 ILVLEDGR 172 (173)
T ss_pred EEEEECCC
Confidence 99998764
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=213.39 Aligned_cols=159 Identities=15% Similarity=0.115 Sum_probs=118.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCCCC-------ccCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYP-------VAMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~-------~~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.+++. +.+++.+++.
T Consensus 22 ~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 101 (354)
T TIGR02142 22 GQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMK 101 (354)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhh
Confidence 599999999999999999999999999999999999876421 112222 2233333332
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh
Q 030566 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS 128 (175)
Q Consensus 59 ----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~ 128 (175)
..++++.+++..........-+..|+||..++++++. +|++++||||....+...++.+.++|+++++
T Consensus 102 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~--~p~lllLDEPts~LD~~~~~~l~~~L~~l~~ 179 (354)
T TIGR02142 102 RARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLS--SPRLLLMDEPLAALDDPRKYEILPYLERLHA 179 (354)
T ss_pred ccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH
Confidence 1233444454332211111123348999999999999 9999999999766667777788889999876
Q ss_pred C-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 129 R-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 129 ~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+ |.|+ +++||+++++..++|+++++..|..+.+
T Consensus 180 ~~g~ti----iivtH~~~~~~~~~d~i~~l~~G~i~~~ 213 (354)
T TIGR02142 180 EFGIPI----LYVSHSLQEVLRLADRVVVLEDGRVAAA 213 (354)
T ss_pred hcCCEE----EEEecCHHHHHHhCCEEEEEeCCEEEEE
Confidence 5 8999 9999999999999999999998876543
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=201.88 Aligned_cols=161 Identities=14% Similarity=0.131 Sum_probs=115.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----ccCCCCc-------cCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYPV-------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~~-------~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++|.+ ..++.+++.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 103 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLN 103 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCCC
Confidence 499999999999999999999999999999999999976421 1222222 112222111
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCC
Q 030566 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~ 131 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.++++++++ +|.
T Consensus 104 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~ 181 (232)
T PRK10771 104 AAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVR--EQPILLLDEPFSALDPALRQEMLTLVSQVCQERQL 181 (232)
T ss_pred HHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 1122333333221111111122337899999999999 9999999999666666677788889998865 488
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|+ +++||+++++..+|++++++..+..+.+++
T Consensus 182 ti----ii~sH~~~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 182 TL----LMVSHSLEDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred EE----EEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99 999999999999999999998887765544
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=198.94 Aligned_cols=159 Identities=16% Similarity=0.133 Sum_probs=115.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----ccCCCCc-------cCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYPV-------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~~-------~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..+++.+ .++..+++.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~ 102 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLN 102 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCcc
Confidence 599999999999999999999999999999999999876421 1122222 223222221
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CC
Q 030566 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
..++++.+++..........-+.++++|..+++++.. +|++++||||....+......+.+++++++++ +.
T Consensus 103 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~ 180 (213)
T TIGR01277 103 AEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVR--PNPILLLDEPFSALDPLLREEMLALVKQLCSERQR 180 (213)
T ss_pred HHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCC
Confidence 1123344444322111111123348899999999999 99999999996666666777888899988654 88
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
|| +++||+.+++.++||+++++..+..+..
T Consensus 181 ti----i~vsh~~~~~~~~~d~v~~l~~g~i~~~ 210 (213)
T TIGR01277 181 TL----LMVTHHLSDARAIASQIAVVSQGKIKVV 210 (213)
T ss_pred EE----EEEeCCHHHHHhhcCeEEEEECCeEEEe
Confidence 99 9999999999999999999988776543
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-30 Score=199.86 Aligned_cols=157 Identities=15% Similarity=0.107 Sum_probs=114.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCCCc---------cCCcchhccH--
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV---------AMDIRELISL-- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~---------~~~~~~~~~~-- 59 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++|.+ ..++.+++..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~ 109 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPL 109 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHH
Confidence 599999999999999999999999999999999999876421 1122221 1233232210
Q ss_pred ----------------HHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030566 60 ----------------EDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 60 ----------------~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
.+.++.+++.. ........-+..++|+..+++++.. +|++++||||....+....+.+.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~~~ 187 (228)
T cd03257 110 RIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALAL--NPKLLIADEPTSALDVSVQAQILDL 187 (228)
T ss_pred HhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhc--CCCEEEecCCCCCCCHHHHHHHHHH
Confidence 12233344421 1111111123348999999999999 9999999999666666777788889
Q ss_pred HHHHHhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 123 VDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 123 l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+++++++ |.|| +++||+++++..+||+++++..+..+
T Consensus 188 l~~~~~~~~~ti----i~~sH~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 188 LKKLQEELGLTL----LFITHDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred HHHHHHHcCCEE----EEEeCCHHHHHHhcCeEEEEeCCEEE
Confidence 9998765 8999 99999999999999999999988754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=201.04 Aligned_cols=161 Identities=17% Similarity=0.121 Sum_probs=115.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCc-------cCCcchhccH------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELISL------ 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~~------ 59 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.+... +.++|.+ ..++.+++..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP 104 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC
Confidence 599999999999999999999999999999999999865321 1233333 1122222210
Q ss_pred -------HHHHHHhC-CCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-C
Q 030566 60 -------EDVMEELG-LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-N 130 (175)
Q Consensus 60 -------~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g 130 (175)
..+++.++ +..........-+..++++..+++++.. +|++++||||....+......+.+++.+++++ +
T Consensus 105 ~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~--~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~ 182 (230)
T TIGR03410 105 RRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVT--RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGG 182 (230)
T ss_pred cchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCC
Confidence 11122221 1110001111112237899999999999 99999999997666677777888899998764 8
Q ss_pred CcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 131 FNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 131 ~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.|| +++||+++++..+|++++++..+..+.+++
T Consensus 183 ~ti----i~~sH~~~~~~~~~d~v~~l~~g~i~~~~~ 215 (230)
T TIGR03410 183 MAI----LLVEQYLDFARELADRYYVMERGRVVASGA 215 (230)
T ss_pred cEE----EEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 999 999999999999999999999887665443
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=206.49 Aligned_cols=161 Identities=16% Similarity=0.116 Sum_probs=119.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc--------cCCcchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV--------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~--------~~~~~~~~~------- 58 (175)
+||+++|+|+||||||||+|+|+|+.+|++|+|.++|+++.. ..+++.+ ..++.+++.
T Consensus 29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~ 108 (277)
T PRK13652 29 RNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG 108 (277)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcC
Confidence 599999999999999999999999999999999999976432 1122222 112222221
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC
Q 030566 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
..+.++.+++..........-+..++++..++++++. +|+++|||||+...+....+.+.+++++++++
T Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~--~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~ 186 (277)
T PRK13652 109 LDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAM--EPQVLVLDEPTAGLDPQGVKELIDFLNDLPET 186 (277)
T ss_pred CCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 1223344444322211122223348899999999999 99999999996666667777888899998765
Q ss_pred -CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 130 -NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 130 -g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|.|| +++||+++++.++||+++++..|..+.+++
T Consensus 187 ~g~tv----li~tH~~~~~~~~~drv~~l~~G~i~~~g~ 221 (277)
T PRK13652 187 YGMTV----IFSTHQLDLVPEMADYIYVMDKGRIVAYGT 221 (277)
T ss_pred cCCEE----EEEecCHHHHHHhCCEEEEEECCeEEEECC
Confidence 8999 999999999999999999999888776554
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-30 Score=213.06 Aligned_cols=157 Identities=13% Similarity=0.046 Sum_probs=116.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-----cccCC-------CCccCCcchhccH---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFD-------YPVAMDIRELISL--------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----~~~~~-------~~~~~~~~~~~~~--------- 59 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++. .+.++ +.+.+++.+++..
T Consensus 44 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~ 123 (377)
T PRK11607 44 KGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPK 123 (377)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCH
Confidence 49999999999999999999999999999999999997642 12233 3334444444421
Q ss_pred -------HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCC
Q 030566 60 -------EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNF 131 (175)
Q Consensus 60 -------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~ 131 (175)
.++++.+++..........-+..|+||..|+|++.. +|++++||||....+...++.+++.++++.+ .|.
T Consensus 124 ~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~--~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 201 (377)
T PRK11607 124 AEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK--RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGV 201 (377)
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 233444455432222221223348999999999999 9999999999555556666677777877754 589
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|+ +++||+.+++..++|++++|..|..+
T Consensus 202 ti----i~vTHd~~ea~~laDri~vl~~G~i~ 229 (377)
T PRK11607 202 TC----VMVTHDQEEAMTMAGRIAIMNRGKFV 229 (377)
T ss_pred EE----EEEcCCHHHHHHhCCEEEEEeCCEEE
Confidence 99 99999999999999999999887654
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-30 Score=205.11 Aligned_cols=160 Identities=16% Similarity=0.139 Sum_probs=117.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCCCc-------cCCcchhccH----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELISL---- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~~---- 59 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..+++.+ ..++.+++..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~ 111 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLRE 111 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHH
Confidence 499999999999999999999999999999999999865421 1122222 2233332211
Q ss_pred -------------HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 60 -------------EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 60 -------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
.+.++.+++..........-+..++|+..+++++.. +|++++||||....+......+.++++++
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 189 (269)
T PRK11831 112 HTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIAL--EPDLIMFDEPFVGQDPITMGVLVKLISEL 189 (269)
T ss_pred ccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 112344444322111111122348899999999999 99999999996666677777888899998
Q ss_pred HhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 127 KSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 127 ~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++ |.|| +++||+++++.++|++++++..+..+.++
T Consensus 190 ~~~~g~ti----iivsH~~~~~~~~~d~v~~l~~G~i~~~g 226 (269)
T PRK11831 190 NSALGVTC----VVVSHDVPEVLSIADHAYIVADKKIVAHG 226 (269)
T ss_pred HHhcCcEE----EEEecCHHHHHHhhCEEEEEECCEEEEeC
Confidence 654 8999 99999999999999999999988765443
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=202.10 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=114.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCc-------cCCcchhccH------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELISL------ 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~~------ 59 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.+... ..+++.+ ..++.+++..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 109 (237)
T PRK11614 30 QGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAE 109 (237)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccC
Confidence 599999999999999999999999999999999999976421 1223322 1122222210
Q ss_pred --------HHHHHHh-CCCCCCchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh
Q 030566 60 --------EDVMEEL-GLGPNGGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS 128 (175)
Q Consensus 60 --------~~~~~~~-~l~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~ 128 (175)
..+++.+ ++... .......+ .++++..+++++.. +|++++||||....+......+.++++++++
T Consensus 110 ~~~~~~~~~~~l~~~~~l~~~--~~~~~~~LS~G~~qrl~la~al~~--~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 185 (237)
T PRK11614 110 RDQFQERIKWVYELFPRLHER--RIQRAGTMSGGEQQMLAIGRALMS--QPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE 185 (237)
T ss_pred hhHHHHHHHHHHHHHHHHHHH--HhCchhhCCHHHHHHHHHHHHHHh--CCCEEEEcCccccCCHHHHHHHHHHHHHHHH
Confidence 0111112 11110 00111222 37889999999999 9999999999666666777788889999877
Q ss_pred CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 129 RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 129 ~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+|.|| +++||+++++.++||+++++..+..+.+++
T Consensus 186 ~~~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 220 (237)
T PRK11614 186 QGMTI----FLVEQNANQALKLADRGYVLENGHVVLEDT 220 (237)
T ss_pred CCCEE----EEEeCcHHHHHhhCCEEEEEeCCEEEeeCC
Confidence 79999 999999999999999999999887665443
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-30 Score=200.18 Aligned_cols=156 Identities=16% Similarity=0.111 Sum_probs=114.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCCCCc-------cCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPV-------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~-------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~ 114 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPAL 114 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHH
Confidence 599999999999999999999999999999999999865421 1222222 123322221
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..++|+..+++++.. +|++++||||....+....+.+.++++++
T Consensus 115 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~ 192 (228)
T PRK10584 115 LRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG--RPDVLFADEPTGNLDRQTGDKIADLLFSL 192 (228)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 1223444444322111111123348899999999999 99999999997666677778888899998
Q ss_pred HhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 127 KSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 127 ~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+++ |.|| +++||+.+++.. ||+++++..+..+
T Consensus 193 ~~~~~~ti----i~~sH~~~~~~~-~d~i~~l~~g~i~ 225 (228)
T PRK10584 193 NREHGTTL----ILVTHDLQLAAR-CDRRLRLVNGQLQ 225 (228)
T ss_pred HHhcCCEE----EEEecCHHHHHh-CCEEEEEECCEEE
Confidence 654 8899 999999998855 9999999887654
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-30 Score=200.62 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=115.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------ccCCCC--------ccCCcchhcc--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYP--------VAMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~--------~~~~~~~~~~-------- 58 (175)
+||+++|+|+||||||||+++|+|+++|++|+|.++|.+... +.+++. +.+++.+++.
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~ 125 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDL 125 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCC
Confidence 599999999999999999999999999999999998865321 112221 1223332221
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-
Q 030566 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR- 129 (175)
Q Consensus 59 --------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~- 129 (175)
...+++.+++..........-+..++++..++++++. +|++++||||+...+....+.+.++|++++++
T Consensus 126 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 203 (236)
T cd03267 126 PPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLH--EPEILFLDEPTIGLDVVAQENIRNFLKEYNRER 203 (236)
T ss_pred CHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 1123344444322111111223348899999999999 99999999997777777778888899998654
Q ss_pred CCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+.|| +++||+++++.+++|+++++..+..+
T Consensus 204 ~~ti----iivsH~~~~~~~~~d~i~~l~~G~i~ 233 (236)
T cd03267 204 GTTV----LLTSHYMKDIEALARRVLVIDKGRLL 233 (236)
T ss_pred CCEE----EEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 7899 99999999999999999999887654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=196.09 Aligned_cols=153 Identities=13% Similarity=0.067 Sum_probs=114.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----ccCCCCc-------cCCcchhcc-----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDYPV-------AMDIRELIS----------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----~~~~~~~-------~~~~~~~~~----------- 58 (175)
+||+++|+|+||||||||+|+|+|+++|++|+|.++|.++.. ..++|.+ ..+..+++.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~ 115 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAK 115 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHH
Confidence 599999999999999999999999999999999999876431 1122222 123333221
Q ss_pred --HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEE
Q 030566 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (175)
Q Consensus 59 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~ 136 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.+++++++++|.|+
T Consensus 116 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti--- 190 (214)
T PRK13543 116 QMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLS--PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAA--- 190 (214)
T ss_pred HHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEE---
Confidence 1234444554432212221223348899999999999 999999999966666777778888999887788999
Q ss_pred EeeeccchhhhhcCCCceeEecc
Q 030566 137 YLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 137 ~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
+++||+++++.++|++++.++.
T Consensus 191 -ii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 191 -LVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred -EEEecChhhhhhhcceEEEEee
Confidence 9999999999999999998864
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-30 Score=199.77 Aligned_cols=157 Identities=12% Similarity=0.060 Sum_probs=115.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCCCCc-------cCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPV-------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~-------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.++|.+ ..++.+++.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 113 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLL 113 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHH
Confidence 599999999999999999999999999999999999976421 1222222 223333321
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..++|+..+++++.. +|++++||||....+....+.+.++++++
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 191 (233)
T PRK11629 114 IGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVN--NPRLVLADEPTGNLDARNADSIFQLLGEL 191 (233)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 1234445555432211111123348899999999999 99999999997776677788888899998
Q ss_pred Hh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
++ +|.|| +++||+++++... ++++++..+..+.
T Consensus 192 ~~~~g~tv----ii~sH~~~~~~~~-~~~~~l~~G~i~~ 225 (233)
T PRK11629 192 NRLQGTAF----LVVTHDLQLAKRM-SRQLEMRDGRLTA 225 (233)
T ss_pred HHhCCCEE----EEEeCCHHHHHhh-CEEEEEECCEEEE
Confidence 65 58999 9999999999875 6888888887653
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-30 Score=203.68 Aligned_cols=161 Identities=18% Similarity=0.190 Sum_probs=116.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc-------cCCcchhcc--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV-------AMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~-------~~~~~~~~~-------- 58 (175)
+||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +.++|.+ .++..+++.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~ 106 (255)
T PRK11231 27 TGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLS 106 (255)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhh
Confidence 599999999999999999999999999999999999875321 1222222 112222111
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
...+++.+++..........-+..+++|..+++++.. +|++++||||....+....+.+.++++++
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~~~l~~l 184 (255)
T PRK11231 107 LWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQ--DTPVVLLDEPTTYLDINHQVELMRLMREL 184 (255)
T ss_pred hccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 1122333333221111111123348899999999999 99999999996666677777888899998
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++|.|| +++||+++++.++|+++++++.+..+..++
T Consensus 185 ~~~~~ti----ii~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 221 (255)
T PRK11231 185 NTQGKTV----VTVLHDLNQASRYCDHLVVLANGHVMAQGT 221 (255)
T ss_pred HHCCCEE----EEEECCHHHHHHhcCEEEEEECCeEEEEcC
Confidence 7778999 999999999999999999999887665443
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-30 Score=205.47 Aligned_cols=160 Identities=11% Similarity=0.043 Sum_probs=116.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc---------ccCCCCccC--------Ccchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVAM--------DIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------~~~~~~~~~--------~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+.- +..+++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~ 105 (271)
T PRK13638 26 LSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRN 105 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHH
Confidence 599999999999999999999999999999999999976421 123333210 1111111
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
...+++.+++..........-+..++||..++++++. +|++++||||....+......+.+++++++
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 183 (271)
T PRK13638 106 LGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL--QARYLLLDEPTAGLDPAGRTQMIAIIRRIV 183 (271)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 0123333343322111111123348899999999999 999999999966666777778888999987
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++|.|| +++||+++++..+||+++++..+..+.++
T Consensus 184 ~~g~ti----i~vtH~~~~~~~~~d~i~~l~~G~i~~~g 218 (271)
T PRK13638 184 AQGNHV----IISSHDIDLIYEISDAVYVLRQGQILTHG 218 (271)
T ss_pred HCCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 778999 99999999999999999999988766543
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-30 Score=203.10 Aligned_cols=160 Identities=17% Similarity=0.166 Sum_probs=116.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCC-------ccCCcchhcc--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYP-------VAMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~-------~~~~~~~~~~-------- 58 (175)
+|++++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+++. +..++.+++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 106 (258)
T PRK13548 27 PGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGL 106 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCC
Confidence 599999999999999999999999999999999999875321 112222 2223333221
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhh------ccCCCCEEEEeCCCcccccccchHHHHHHH
Q 030566 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELD------NYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 --------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~------~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..++++.+++..........-+..++||..++++++ . +|++++||||....+......+.++++
T Consensus 107 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~--~p~lllLDEPt~~LD~~~~~~l~~~l~ 184 (258)
T PRK13548 107 SRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDG--PPRWLLLDEPTSALDLAHQHHVLRLAR 184 (258)
T ss_pred CcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCC--CCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 122334444432211111112334889999999998 6 899999999966666767778888999
Q ss_pred HHH-hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 125 HLK-SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 125 ~l~-~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++ ++|.|| +++||+++++.++||+++++..|..+..+
T Consensus 185 ~~~~~~~~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 223 (258)
T PRK13548 185 QLAHERGLAV----IVVLHDLNLAARYADRIVLLHQGRLVADG 223 (258)
T ss_pred HHHHhcCCEE----EEEECCHHHHHHhcCEEEEEECCEEEeeC
Confidence 987 678999 99999999999999999999887765443
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-30 Score=197.65 Aligned_cols=156 Identities=16% Similarity=0.092 Sum_probs=114.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCCCC-------ccCCcchhcc------
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYP-------VAMDIRELIS------ 58 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~-------~~~~~~~~~~------ 58 (175)
|+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++. +..++.+++.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 103 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK 103 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC
Confidence 8999999999999999999999999999999999865321 112222 1223333221
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-
Q 030566 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR- 129 (175)
Q Consensus 59 --------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~- 129 (175)
..++++.+++..........-+..++|+..++++++. +|++++||||+...+....+.+.+++++++++
T Consensus 104 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 181 (214)
T cd03297 104 RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAA--QPELLLLDEPFSALDRALRLQLLPELKQIKKNL 181 (214)
T ss_pred CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 1223444444321111111123348899999999999 99999999997776677777888899998765
Q ss_pred CCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
|.|| +++||+++++.++|++++++..+..+.
T Consensus 182 ~~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 182 NIPV----IFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred CcEE----EEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 8899 999999999999999999999887543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-30 Score=207.60 Aligned_cols=162 Identities=14% Similarity=0.104 Sum_probs=119.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCCCCccC--------Ccchhcc---
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPVAM--------DIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~~~--------~~~~~~~--- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+.. ++.+++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~ 111 (286)
T PRK13646 32 QGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGP 111 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhH
Confidence 599999999999999999999999999999999999976421 123443311 1222111
Q ss_pred -------------HHHHHHHhCCC-CCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHH
Q 030566 59 -------------LEDVMEELGLG-PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 -------------~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..++++.+++. .........-+.+++|+..++++++. +|++++||||....+..+...+.++++
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~--~p~illlDEPt~~LD~~~~~~l~~~l~ 189 (286)
T PRK13646 112 KNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAM--NPDIIVLDEPTAGLDPQSKRQVMRLLK 189 (286)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 12233344443 11111111123348899999999999 999999999966666777778888999
Q ss_pred HHHh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 125 HLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 125 ~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
++++ +|.|| +++||+++++.++||+++++..|..+.+++.
T Consensus 190 ~l~~~~g~tv----l~vtH~~~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 190 SLQTDENKTI----ILVSHDMNEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHhCCCEE----EEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9865 58999 9999999999999999999998887655543
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-30 Score=196.88 Aligned_cols=155 Identities=20% Similarity=0.205 Sum_probs=113.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------ccCCCCc-------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYPV-------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~~-------~~~~~~~~~--------- 58 (175)
+| +++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 103 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP 103 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCC
Confidence 47 999999999999999999999999999999999976421 1222222 223333321
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCC
Q 030566 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
..++++.+++..........-+..+++|..+++++.. +|++++||||....+....+.+.++++++++ +.
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ 180 (211)
T cd03264 104 SKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVG--DPSILIVDEPTAGLDPEERIRFRNLLSELGE-DR 180 (211)
T ss_pred HHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CC
Confidence 1223334444321111111122338899999999999 9999999999777777777888889999876 58
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|| +++||+++++.+++|+++++..+..+
T Consensus 181 ti----i~vsH~~~~~~~~~d~i~~l~~g~i~ 208 (211)
T cd03264 181 IV----ILSTHIVEDVESLCNQVAVLNKGKLV 208 (211)
T ss_pred EE----EEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 89 99999999999999999999987654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-30 Score=202.65 Aligned_cols=161 Identities=15% Similarity=0.123 Sum_probs=117.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc-------cCCcchhcc--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV-------AMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~-------~~~~~~~~~-------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.++|.+ ..++.+++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 105 (256)
T TIGR03873 26 PGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRS 105 (256)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhh
Confidence 599999999999999999999999999999999999875421 1122222 122222221
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.++++++
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~ 183 (256)
T TIGR03873 106 LWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQ--EPKLLLLDEPTNHLDVRAQLETLALVREL 183 (256)
T ss_pred hccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 1122233333211111111122348899999999999 99999999997776677788888899998
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++|.|| +++||+++++.++||+++++..+..+.+++
T Consensus 184 ~~~~~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 220 (256)
T TIGR03873 184 AATGVTV----VAALHDLNLAASYCDHVVVLDGGRVVAAGP 220 (256)
T ss_pred HhcCCEE----EEEeCCHHHHHHhCCEEEEEeCCCEEEecC
Confidence 7778999 999999999999999999999887665443
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-30 Score=214.14 Aligned_cols=159 Identities=18% Similarity=0.079 Sum_probs=118.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCCCC-------ccCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYP-------VAMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~-------~~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++|. +.+++.+++.
T Consensus 53 ~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~ 132 (400)
T PRK10070 53 EGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGME 132 (400)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 599999999999999999999999999999999999876421 123332 2234433332
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..|+||..++++++. +|+++|||||....+...+..+.++++++
T Consensus 133 ~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~--~P~iLLLDEPts~LD~~~r~~l~~~L~~l 210 (400)
T PRK10070 133 LAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAI--NPDILLMDEAFSALDPLIRTEMQDELVKL 210 (400)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHHHHHHHH
Confidence 1234555555433222222223348999999999999 99999999996666666677788888888
Q ss_pred Hh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
++ .|+|| +++||+++++.+++|++++|..|..+.+
T Consensus 211 ~~~~g~TI----IivTHd~~~~~~~~Dri~vL~~G~i~~~ 246 (400)
T PRK10070 211 QAKHQRTI----VFISHDLDEAMRIGDRIAIMQNGEVVQV 246 (400)
T ss_pred HHHCCCeE----EEEECCHHHHHHhCCEEEEEECCEEEec
Confidence 64 58999 9999999999999999999998876543
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-30 Score=207.67 Aligned_cols=161 Identities=17% Similarity=0.079 Sum_probs=119.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCCCCcc--------CCcchhcc---
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPVA--------MDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~~--------~~~~~~~~--- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. +.+++.+. .++.+++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~ 111 (290)
T PRK13634 32 SGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGP 111 (290)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHH
Confidence 599999999999999999999999999999999999976421 12333331 12222221
Q ss_pred -------------HHHHHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHH
Q 030566 59 -------------LEDVMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 -------------~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..++++.+++... .......-+..++|+..|+++++. +|+++|||||+...+......+.++++
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~--~P~llllDEPt~~LD~~~~~~l~~~L~ 189 (290)
T PRK13634 112 MNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAM--EPEVLVLDEPTAGLDPKGRKEMMEMFY 189 (290)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 1233445555321 111111223348899999999999 999999999966666677778888999
Q ss_pred HHHhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 125 HLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 125 ~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++++ |.|| +++||+++++..+||+++++..|..+.+++
T Consensus 190 ~l~~~~g~tv----iiitHd~~~~~~~~drv~~l~~G~i~~~g~ 229 (290)
T PRK13634 190 KLHKEKGLTT----VLVTHSMEDAARYADQIVVMHKGTVFLQGT 229 (290)
T ss_pred HHHHhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 98654 8999 999999999999999999999887765543
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-30 Score=219.72 Aligned_cols=163 Identities=16% Similarity=0.106 Sum_probs=123.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCc-------cCCcchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~------- 58 (175)
+|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++|.+ .+++.+++.
T Consensus 36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 115 (510)
T PRK15439 36 AGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQ 115 (510)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccch
Confidence 599999999999999999999999999999999999865421 1122222 223333321
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcE
Q 030566 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNV 133 (175)
Q Consensus 59 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tv 133 (175)
..++++.+++..........-+..++||..++++++. +|++++||||+...+......+.++|++++++|.||
T Consensus 116 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~ti 193 (510)
T PRK15439 116 ASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMR--DSRILILDEPTASLTPAETERLFSRIRELLAQGVGI 193 (510)
T ss_pred HHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 1234555666433222222223448999999999999 999999999977777777788888999998789999
Q ss_pred EEEEeeeccchhhhhcCCCceeEeccchhhHHhhhh
Q 030566 134 CAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYS 169 (175)
Q Consensus 134 li~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (175)
+++||+++++.++||+++++..+..+..+++.
T Consensus 194 ----iivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (510)
T PRK15439 194 ----VFISHKLPEIRQLADRISVMRDGTIALSGKTA 225 (510)
T ss_pred ----EEEeCCHHHHHHhCCEEEEEECCEEEEecChH
Confidence 99999999999999999999988876554443
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-30 Score=198.23 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=118.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCCCc-------cCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++||||||||||||+|+|+|+.+|++|+|.++|.++.. .++++.+ .+++.+++.
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~ 108 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG 108 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcc
Confidence 499999999999999999999999999999999999976532 2333333 222222211
Q ss_pred -------------------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccch
Q 030566 59 -------------------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVP 117 (175)
Q Consensus 59 -------------------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~ 117 (175)
..+.++.+++...... +.+.+| |+||+.+||++.+ +|++++.|||....+.....
T Consensus 109 ~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q--ra~~LSGGQQQRVaIARaL~Q--~pkiILADEPvasLDp~~a~ 184 (258)
T COG3638 109 YTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ--RASTLSGGQQQRVAIARALVQ--QPKIILADEPVASLDPESAK 184 (258)
T ss_pred cchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH--HhccCCcchhHHHHHHHHHhc--CCCEEecCCcccccChhhHH
Confidence 2344455554433222 223444 8899999999999 99999999994444444566
Q ss_pred HHHHHHHHHH-hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 118 VLRNFVDHLK-SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 118 ~~~~~l~~l~-~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.+++.|++++ ++|.|| ++..|+++.+.+||+|++-+..|..++-+
T Consensus 185 ~Vm~~l~~in~~~g~Tv----i~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 185 KVMDILKDINQEDGITV----IVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred HHHHHHHHHHHHcCCEE----EEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 6777899885 569999 99999999999999999999999887643
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-30 Score=202.76 Aligned_cols=161 Identities=14% Similarity=0.126 Sum_probs=120.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------------------ccCCCCc-------cCCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------------ENFDYPV-------AMDI 53 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------------------~~~~~~~-------~~~~ 53 (175)
+||+++|+|+||||||||+++|+|+++|++|+|.++|.+... +.++|.+ ..++
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv 109 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 109 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcH
Confidence 599999999999999999999999999999999999865421 1222221 2233
Q ss_pred chhcc-----------------HHHHHHHhCCCCCC-chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCccccccc
Q 030566 54 RELIS-----------------LEDVMEELGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTH 115 (175)
Q Consensus 54 ~~~~~-----------------~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~ 115 (175)
.+++. ..++++.+++.... ......-+..++++..+++++.. +|++++||||....+...
T Consensus 110 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~ 187 (257)
T PRK10619 110 LENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAM--EPEVLLFDEPTSALDPEL 187 (257)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHH
Confidence 33321 12344555554321 11111223348899999999999 999999999977777777
Q ss_pred chHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 116 VPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 116 ~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
...+.+++++++++|.|| +++||+.+++.++||+++++..+..+..++
T Consensus 188 ~~~l~~~l~~l~~~g~ti----iivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (257)
T PRK10619 188 VGEVLRIMQQLAEEGKTM----VVVTHEMGFARHVSSHVIFLHQGKIEEEGA 235 (257)
T ss_pred HHHHHHHHHHHHhcCCEE----EEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 788888999987779999 999999999999999999999887765433
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-30 Score=206.03 Aligned_cols=162 Identities=12% Similarity=0.076 Sum_probs=118.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc---------ccCCCCcc--------CCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVA--------MDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------~~~~~~~~--------~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..++|.+. .++.+++.
T Consensus 31 ~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 110 (283)
T PRK13636 31 KGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVN 110 (283)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHH
Confidence 599999999999999999999999999999999999976520 12233221 12222221
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
...+++.+++..........-+..++|+..+++++.. +|++++||||....+......+.+++++++
T Consensus 111 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~--~p~lLilDEPt~gLD~~~~~~l~~~l~~l~ 188 (283)
T PRK13636 111 LKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM--EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQ 188 (283)
T ss_pred cCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 1222333444322111111123348899999999999 999999999966666777778888999987
Q ss_pred hC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 128 SR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 128 ~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
++ |.|| +++||+++++..+||+++++..|..+.+++.
T Consensus 189 ~~~g~ti----llvsH~~~~~~~~~dri~~l~~G~i~~~g~~ 226 (283)
T PRK13636 189 KELGLTI----IIATHDIDIVPLYCDNVFVMKEGRVILQGNP 226 (283)
T ss_pred HhCCCEE----EEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 64 8999 9999999999999999999998887665543
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-30 Score=190.00 Aligned_cols=137 Identities=14% Similarity=0.118 Sum_probs=108.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++...... + .....+++-.. -+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~--------~-----~~~~~i~~~~q-------LS 84 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPR--------D-----ARRAGIAMVYQ-------LS 84 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHH--------H-----HHhcCeEEEEe-------cC
Confidence 5999999999999999999999999999999999998764321100 0 00000111000 23
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccc
Q 030566 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
..++++..+++++.. +|++++||||....+......+.++++++++++.|+ +++||+.+++.+++++++.+..+
T Consensus 85 ~G~~qrl~laral~~--~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~ti----ii~sh~~~~~~~~~d~~~~l~~g 158 (163)
T cd03216 85 VGERQMVEIARALAR--NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAV----IFISHRLDEVFEIADRVTVLRDG 158 (163)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEE----EEEeCCHHHHHHhCCEEEEEECC
Confidence 458899999999999 999999999966666777778888999987778999 99999999999999999999887
Q ss_pred hhh
Q 030566 161 HTV 163 (175)
Q Consensus 161 ~~~ 163 (175)
..+
T Consensus 159 ~i~ 161 (163)
T cd03216 159 RVV 161 (163)
T ss_pred EEE
Confidence 643
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-30 Score=203.51 Aligned_cols=159 Identities=21% Similarity=0.238 Sum_probs=115.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc-------cCCcchhcc--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV-------AMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~-------~~~~~~~~~-------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ .+++.+++.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 115 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHG 115 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccc
Confidence 599999999999999999999999999999999999875421 1122222 122222111
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..+++|..+++++.. +|+++|||||....+......+.++++++
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~~~~~l~~l 193 (265)
T PRK10575 116 ALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQ--DSRCLLLDEPTSALDIAHQVDVLALVHRL 193 (265)
T ss_pred cccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 1223333333221111111123348899999999999 99999999996666676777888899998
Q ss_pred HhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 127 KSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 127 ~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+++ |.|| +++||+++++.++||+++++..+..+.+
T Consensus 194 ~~~~~~ti----ii~sH~~~~i~~~~d~i~~l~~G~i~~~ 229 (265)
T PRK10575 194 SQERGLTV----IAVLHDINMAARYCDYLVALRGGEMIAQ 229 (265)
T ss_pred HHhcCCEE----EEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 654 8999 9999999999999999999988876543
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-30 Score=201.41 Aligned_cols=160 Identities=17% Similarity=0.168 Sum_probs=116.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCcc------CCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA------MDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~------~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..+++.+. .++.+++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~ 107 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEK 107 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhhcCcH
Confidence 599999999999999999999999999999999999876421 12222221 12222111
Q ss_pred ---HHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCCcE
Q 030566 59 ---LEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNV 133 (175)
Q Consensus 59 ---~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tv 133 (175)
..++++.+++.. ........-+..++|+..+++++.. +|+++|||||....+....+.+.+.++++++ +|.||
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~ti 185 (241)
T PRK14250 108 NVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLAN--NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTV 185 (241)
T ss_pred HHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 123344444431 1111111123348899999999999 9999999999666666677788889998876 48999
Q ss_pred EEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 134 CAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 134 li~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++||+++++.++||++++++.+..+.+.
T Consensus 186 ----i~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 214 (241)
T PRK14250 186 ----IWITHNMEQAKRIGDYTAFLNKGILVEYA 214 (241)
T ss_pred ----EEEeccHHHHHHhCCEEEEEeCCEEEEeC
Confidence 99999999999999999999988776543
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-29 Score=204.45 Aligned_cols=158 Identities=13% Similarity=0.052 Sum_probs=116.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCCCCcc--------CCcchhcc---
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPVA--------MDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~~--------~~~~~~~~--- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++|.+. .++.+++.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~ 111 (280)
T PRK13649 32 DGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGP 111 (280)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHH
Confidence 599999999999999999999999999999999999875421 12233221 12222221
Q ss_pred -------------HHHHHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHH
Q 030566 59 -------------LEDVMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 -------------~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..++++.+++... .......-+..++||..++++++. +|+++|||||....+....+.+.++|+
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~~~l~ 189 (280)
T PRK13649 112 QNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAM--EPKILVLDEPTAGLDPKGRKELMTLFK 189 (280)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1123344444321 111111123348999999999999 999999999966666777778888999
Q ss_pred HHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 125 HLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 125 ~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
+++++|.|| +++||+++++.++||+++++..+..+.
T Consensus 190 ~~~~~~~ti----iivsH~~~~~~~~~d~i~~l~~G~i~~ 225 (280)
T PRK13649 190 KLHQSGMTI----VLVTHLMDDVANYADFVYVLEKGKLVL 225 (280)
T ss_pred HHHHCCCEE----EEEeccHHHHHHhCCEEEEEECCEEEE
Confidence 987778999 999999999999999999998877653
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=210.83 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=118.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeec----Ccc-----------cccCC-------CCccCCcchhcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL----DPA-----------AENFD-------YPVAMDIRELIS 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~----~~~-----------~~~~~-------~~~~~~~~~~~~ 58 (175)
+||+++|+|+||||||||+|+|+|+++|++|+|.++|. ++. ...++ +.+..++.+++.
T Consensus 49 ~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~ 128 (382)
T TIGR03415 49 EGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVA 128 (382)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHH
Confidence 59999999999999999999999999999999999985 221 01222 223334444432
Q ss_pred ----------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030566 59 ----------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 ----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..++++.+++..........-+..++||..++++++. +|++++||||....+...+..+.+.
T Consensus 129 ~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~--~P~ILLlDEPts~LD~~~r~~l~~~ 206 (382)
T TIGR03415 129 FGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAM--DADILLMDEPFSALDPLIRTQLQDE 206 (382)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHHHH
Confidence 1234555565433222222223348999999999999 9999999999555555566677788
Q ss_pred HHHHHhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 123 VDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 123 l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+.+++++ +.|+ +++||+++++.+++|++++|+.|..+-+
T Consensus 207 L~~l~~~~~~TI----I~iTHdl~e~~~l~DrI~vl~~G~iv~~ 246 (382)
T TIGR03415 207 LLELQAKLNKTI----IFVSHDLDEALKIGNRIAIMEGGRIIQH 246 (382)
T ss_pred HHHHHHhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 8888654 8999 9999999999999999999998876543
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-29 Score=195.78 Aligned_cols=159 Identities=14% Similarity=0.175 Sum_probs=116.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--ccCCCCc---------cCCcchhc------------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPV---------AMDIRELI------------ 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--~~~~~~~---------~~~~~~~~------------ 57 (175)
+||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.. +.++|.+ ..++.+++
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~ 84 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLR 84 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccccccc
Confidence 599999999999999999999999999999999999976421 1122221 11222111
Q ss_pred --------cHHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC
Q 030566 58 --------SLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 58 --------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
....+++.+++..........-+..+++|..+++++.. +|+++++|||....+......+.+++++++++
T Consensus 85 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~ 162 (223)
T TIGR03771 85 RPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALAT--RPSVLLLDEPFTGLDMPTQELLTELFIELAGA 162 (223)
T ss_pred CCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc
Confidence 01234455555432222222223348899999999999 99999999996666666777888899998777
Q ss_pred CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
|.|+ +++||+++++.++||+++++ .+..+...
T Consensus 163 ~~tv----ii~sH~~~~~~~~~d~i~~l-~G~i~~~~ 194 (223)
T TIGR03771 163 GTAI----LMTTHDLAQAMATCDRVVLL-NGRVIADG 194 (223)
T ss_pred CCEE----EEEeCCHHHHHHhCCEEEEE-CCEEEeec
Confidence 9999 99999999999999999999 56555443
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=198.15 Aligned_cols=161 Identities=12% Similarity=0.061 Sum_probs=120.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----ccCCCCc-------cCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYPV-------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~~-------~~~~~~~~~---------- 58 (175)
+|++++|+|+||||||||+++|+|+++|++|+|.++|.+... ..+++.+ .++..+++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~ 104 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK 104 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCCH
Confidence 499999999999999999999999999999999999875421 1222221 223332221
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CC
Q 030566 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
...+++.+++..........-+..++++..++++++. +|++++||||....+....+.+.+++++++++ |.
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~--~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~ 182 (232)
T cd03300 105 AEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVN--EPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGI 182 (232)
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC
Confidence 1234444555433222222223348899999999999 99999999997776677778888899998764 89
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|| +++||+.+++.+.||+++++..+..+.+++
T Consensus 183 ti----ii~sh~~~~~~~~~d~i~~l~~G~~~~~~~ 214 (232)
T cd03300 183 TF----VFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214 (232)
T ss_pred EE----EEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99 999999999999999999999887765544
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-30 Score=196.34 Aligned_cols=151 Identities=16% Similarity=0.069 Sum_probs=116.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC--ccccceeEEeecCccc----ccCCCCccCCcchhccHHHHHHHhCCCCCCch
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA----ENFDYPVAMDIRELISLEDVMEELGLGPNGGL 74 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~--~~~~G~I~i~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 74 (175)
+||+++|+||||||||||+++|+|+. +|++|+|.++|.++.. ..+++.+ +....+...++.+++.+....
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~--q~~~~~~~~t~~~~i~~~~~~-- 109 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVP--QDDILHPTLTVRETLMFAAKL-- 109 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEcc--CcccCCCCCcHHHHHHHHHHh--
Confidence 49999999999999999999999999 9999999999987532 2233433 222233333444544321110
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchh-hhhcCCCc
Q 030566 75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCI-RFRTLPPC 153 (175)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~-~~~~~~~~ 153 (175)
..-+..++++..++++++. +|++++||||....+....+.+.+++++++++|.|+ +++||+++ ++.+++|+
T Consensus 110 --~~LS~G~~qrv~laral~~--~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~ti----ii~sh~~~~~~~~~~d~ 181 (194)
T cd03213 110 --RGLSGGERKRVSIALELVS--NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTI----ICSIHQPSSEIFELFDK 181 (194)
T ss_pred --ccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEE----EEEecCchHHHHHhcCE
Confidence 0123348899999999999 999999999966666777778888999987779999 99999996 78899999
Q ss_pred eeEeccchhh
Q 030566 154 IVCFCCTHTV 163 (175)
Q Consensus 154 ~~~~~~~~~~ 163 (175)
++++..+..+
T Consensus 182 v~~l~~G~i~ 191 (194)
T cd03213 182 LLLLSQGRVI 191 (194)
T ss_pred EEEEeCCEEE
Confidence 9999988754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-29 Score=202.64 Aligned_cols=160 Identities=16% Similarity=0.195 Sum_probs=116.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc-------cCCcchhcc--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV-------AMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~-------~~~~~~~~~-------- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++|.+ ..++.+++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~ 111 (265)
T PRK10253 32 DGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQP 111 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccc
Confidence 599999999999999999999999999999999999875421 1122222 112222110
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..+++|..+++++.. +|++++||||....+....+.+.++|.++
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~~~L~~l 189 (265)
T PRK10253 112 LFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ--ETAIMLLDEPTTWLDISHQIDLLELLSEL 189 (265)
T ss_pred cccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 1223344444321111111122348899999999999 99999999996666666777888899998
Q ss_pred Hh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++ +|.|| +++||+++++.++||+++++..+..+.++
T Consensus 190 ~~~~~~ti----ii~tH~~~~~~~~~d~i~~l~~G~i~~~g 226 (265)
T PRK10253 190 NREKGYTL----AAVLHDLNQACRYASHLIALREGKIVAQG 226 (265)
T ss_pred HHhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 76 48899 99999999999999999999988765443
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-30 Score=204.77 Aligned_cols=158 Identities=11% Similarity=0.033 Sum_probs=115.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCcc--------CCcchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA--------MDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~--------~~~~~~~~------- 58 (175)
+||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +.+++.+. .++.+++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~ 111 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG 111 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCC
Confidence 599999999999999999999999999999999999976532 12333321 12222221
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC
Q 030566 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
..++++.+++..........-+..++|+..++++++. +|++++||||+...+......+.+++++++++
T Consensus 112 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~--~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~ 189 (279)
T PRK13650 112 IPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAM--RPKIIILDEATSMLDPEGRLELIKTIKGIRDD 189 (279)
T ss_pred CCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 1223333444322111111123348899999999999 99999999996666667777888899998764
Q ss_pred -CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 130 -NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 130 -g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
|.|| +++||+++++ .+||+++++..|..+..
T Consensus 190 ~g~ti----livtH~~~~~-~~~dri~~l~~G~i~~~ 221 (279)
T PRK13650 190 YQMTV----ISITHDLDEV-ALSDRVLVMKNGQVEST 221 (279)
T ss_pred cCCEE----EEEecCHHHH-HhCCEEEEEECCEEEEE
Confidence 8999 9999999999 58999999988876644
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-29 Score=203.38 Aligned_cols=161 Identities=11% Similarity=0.075 Sum_probs=119.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc---------ccCCCCcc--------CCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVA--------MDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------~~~~~~~~--------~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++|.+. .++.+++.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~ 106 (275)
T PRK13639 27 KGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLN 106 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHH
Confidence 599999999999999999999999999999999999976421 11222221 12222221
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..++++..++++++. +|++++||||....+......+.+++++++
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~~~l~~l~ 184 (275)
T PRK13639 107 LGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAM--KPEIIVLDEPTSGLDPMGASQIMKLLYDLN 184 (275)
T ss_pred cCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 1233444444322211211223348899999999999 999999999977666777778888999987
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++|.|| +++||+++++.++||+++++..+..+.+++
T Consensus 185 ~~~~ti----l~vtH~~~~~~~~~d~i~~l~~G~i~~~g~ 220 (275)
T PRK13639 185 KEGITI----IISTHDVDLVPVYADKVYVMSDGKIIKEGT 220 (275)
T ss_pred HCCCEE----EEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 778999 999999999999999999998887665543
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=198.05 Aligned_cols=162 Identities=14% Similarity=0.115 Sum_probs=117.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC--ccccceeEEeecCccc--------ccCCCCc-------cCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~--~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+. +|++|+|.++|.++.. ..+++.+ ..+..+++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~ 104 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNA 104 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHH
Confidence 59999999999999999999999995 7999999999975421 1122222 111221110
Q ss_pred ------------------HHHHHHHhCCCCC-Cchhhh-HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchH
Q 030566 59 ------------------LEDVMEELGLGPN-GGLIYC-MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 59 ------------------~~~~~~~~~l~~~-~~~~~~-~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
..++++.+++... ...... .-+..++|+..+++++.. +|++++||||+...+....+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~ 182 (243)
T TIGR01978 105 RRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALL--EPKLAILDEIDSGLDIDALKI 182 (243)
T ss_pred hhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHH
Confidence 1223334454321 111111 123348999999999999 999999999977766777788
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeccchhhhhcC-CCceeEeccchhhHHhhh
Q 030566 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTL-PPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~-~~~~~~~~~~~~~~~~~~ 168 (175)
+.++|++++++|.|| +++||+++++..+ ||+++++..+..+.+++.
T Consensus 183 l~~~l~~~~~~~~tv----i~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (243)
T TIGR01978 183 VAEGINRLREPDRSF----LIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV 229 (243)
T ss_pred HHHHHHHHHHCCcEE----EEEEecHHHHHhhcCCeEEEEeCCEEEEecCH
Confidence 888999997778999 9999999999998 899999998877655443
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-29 Score=199.97 Aligned_cols=161 Identities=17% Similarity=0.132 Sum_probs=116.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------------------ccCCCCc-------cCCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------------ENFDYPV-------AMDI 53 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------------------~~~~~~~-------~~~~ 53 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.+++.+ ..++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 104 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTV 104 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcH
Confidence 599999999999999999999999999999999999865421 1122222 2233
Q ss_pred chhcc-----------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccc
Q 030566 54 RELIS-----------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHV 116 (175)
Q Consensus 54 ~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~ 116 (175)
.+++. ..++++.+++..........-+..++++..+++++.. +|++++||||....+....
T Consensus 105 ~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~ 182 (252)
T TIGR03005 105 LDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAM--RPKVMLFDEVTSALDPELV 182 (252)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHH
Confidence 22221 1223334444321111111122348899999999999 9999999999666666667
Q ss_pred hHHHHHHHHHHhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 117 PVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 117 ~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
..+.+++++++++ |.|+ +++||+++++.+++|+++++..|..+.++.
T Consensus 183 ~~l~~~l~~~~~~~~~ti----iivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 183 GEVLNVIRRLASEHDLTM----LLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHhcCcEE----EEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 7788889988664 8999 999999999999999999999988765543
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=217.24 Aligned_cols=161 Identities=16% Similarity=0.121 Sum_probs=120.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCc-------cCCcchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+ .+++.+++.
T Consensus 30 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (510)
T PRK09700 30 PGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTK 109 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccccc
Confidence 599999999999999999999999999999999999865421 1233322 112222111
Q ss_pred ----------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030566 59 ----------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 ----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..++++.+++..........-+..++||..++++++. +|++++||||+...+......+.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~--~p~lllLDEPt~~LD~~~~~~l~~~ 187 (510)
T PRK09700 110 KVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLML--DAKVIIMDEPTSSLTNKEVDYLFLI 187 (510)
T ss_pred ccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 1223444555432222222223348999999999999 9999999999777777778888889
Q ss_pred HHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 123 VDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|++++++|.|| +++||+++++.++||++++++.+..+..++
T Consensus 188 l~~l~~~g~ti----iivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 228 (510)
T PRK09700 188 MNQLRKEGTAI----VYISHKLAEIRRICDRYTVMKDGSSVCSGM 228 (510)
T ss_pred HHHHHhCCCEE----EEEeCCHHHHHHhCCEEEEEECCEEeeecc
Confidence 99998779999 999999999999999999999887765544
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=190.04 Aligned_cols=129 Identities=16% Similarity=0.078 Sum_probs=107.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.+ +++.+ +... -+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----i~~~~--q~~~-----------------------LS 73 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----PVYKP--QYID-----------------------LS 73 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----EEEEc--ccCC-----------------------CC
Confidence 599999999999999999999999999999999998853 22222 1000 23
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCC-CcEEEEEeeeccchhhhhcCCCceeEecc
Q 030566 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRN-FNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g-~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
..++++..++++++. +|++++||||....+....+.+.+.++++++++ .|| +++||+++++..++++++++..
T Consensus 74 gGq~qrv~laral~~--~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~ti----iivsH~~~~~~~~~d~i~~l~~ 147 (177)
T cd03222 74 GGELQRVAIAAALLR--NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTA----LVVEHDLAVLDYLSDRIHVFEG 147 (177)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEE----EEEECCHHHHHHhCCEEEEEcC
Confidence 458999999999999 999999999966666666777888888887664 899 9999999999999999999998
Q ss_pred chhhHH
Q 030566 160 THTVVQ 165 (175)
Q Consensus 160 ~~~~~~ 165 (175)
+..+++
T Consensus 148 ~~~~~~ 153 (177)
T cd03222 148 EPGVYG 153 (177)
T ss_pred CCccce
Confidence 887755
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-29 Score=192.76 Aligned_cols=151 Identities=13% Similarity=0.036 Sum_probs=110.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------ccCC-------CCccCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFD-------YPVAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~-------~~~~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. +.++ +.+..++.+++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~ 105 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPG 105 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCcc
Confidence 599999999999999999999999999999999999876421 1111 222223333321
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEE
Q 030566 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVC 134 (175)
Q Consensus 59 ----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvl 134 (175)
..++++.+++..........-+..++++..++++++. +|++++||||....+......+.++++++++++.||
T Consensus 106 ~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti- 182 (204)
T PRK13538 106 DDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLT--RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMV- 182 (204)
T ss_pred HHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEE-
Confidence 1234455555322111111223348899999999999 999999999977766777778888999987778899
Q ss_pred EEEeeeccchhhhhcCCCceeEe
Q 030566 135 AVYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 135 i~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
+++||+.+++..+..+.+.+
T Consensus 183 ---ii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 183 ---ILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred ---EEEecChhhhccCCceEEec
Confidence 99999999998877777655
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-29 Score=192.57 Aligned_cols=150 Identities=14% Similarity=0.091 Sum_probs=109.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-----------cccCCCCc-------cCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDYPV-------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----------~~~~~~~~-------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+.+++.+ ..++.+++.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~ 102 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLK 102 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHH
Confidence 59999999999999999999999999999999999987631 11222222 223333221
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.++++++
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~ 180 (206)
T TIGR03608 103 YKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILK--DPPLILADEPTGSLDPKNRDEVLDLLLEL 180 (206)
T ss_pred hcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcCCCCHHHHHHHHHHHHHH
Confidence 1234445555332212222223348899999999999 99999999996666667777888899998
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEe
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
+++|.|+ +++||+++.+ +.|++++++
T Consensus 181 ~~~~~ti----i~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 181 NDEGKTI----IIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred HhcCCEE----EEEeCCHHHH-hhcCEEEeC
Confidence 7778999 9999999865 579987754
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-29 Score=197.99 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=117.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC-----ccccceeEEeecCccc---------ccCCCCc------cCCcchhcc--
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC-----ETVRRTMHIVNLDPAA---------ENFDYPV------AMDIRELIS-- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~-----~~~~G~I~i~g~~~~~---------~~~~~~~------~~~~~~~~~-- 58 (175)
+||+++|+||||||||||+|+|+|+. +|++|+|.++|.++.. +.++|.+ ..++.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~ 104 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYG 104 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHHHHHHhH
Confidence 59999999999999999999999999 9999999999876421 1122222 123333221
Q ss_pred ---------------HHHHHHHhCCCCCCchh--hhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHH
Q 030566 59 ---------------LEDVMEELGLGPNGGLI--YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN 121 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~ 121 (175)
..++++.+++....... ...-+..++|+..++++++. +|++++||||+...+......+.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~~ 182 (227)
T cd03260 105 LRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN--EPEVLLLDEPTSALDPISTAKIEE 182 (227)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHHH
Confidence 11233444443221111 01123348899999999999 999999999977766777778888
Q ss_pred HHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 122 FVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 122 ~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+|++++++ .|| +++||+++++.++||+++++..|..+.++
T Consensus 183 ~l~~~~~~-~ti----i~~sH~~~~~~~~~d~i~~l~~G~i~~~g 222 (227)
T cd03260 183 LIAELKKE-YTI----VIVTHNMQQAARVADRTAFLLNGRLVEFG 222 (227)
T ss_pred HHHHHhhC-cEE----EEEeccHHHHHHhCCEEEEEeCCEEEEec
Confidence 99998776 889 99999999999999999999988766443
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=200.96 Aligned_cols=161 Identities=14% Similarity=0.127 Sum_probs=117.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCCCc---------cCCcchhcc---
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV---------AMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~---------~~~~~~~~~--- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 115 (265)
T TIGR02769 36 EGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPL 115 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHH
Confidence 599999999999999999999999999999999999875421 1222222 122222210
Q ss_pred --------------HHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 59 --------------LEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 59 --------------~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
..++++.+++.. ........-+..++|+..++++++. +|++++||||....+....+.+.+++
T Consensus 116 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~--~p~illLDEPt~~LD~~~~~~l~~~l 193 (265)
T TIGR02769 116 RHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAV--KPKLIVLDEAVSNLDMVLQAVILELL 193 (265)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 123445555531 1111111123348999999999999 99999999996666666677788899
Q ss_pred HHHHhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 124 DHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 124 ~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++++++ |.|| +++||+++++.+++|++++++.+..+.+++
T Consensus 194 ~~~~~~~g~ti----iivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (265)
T TIGR02769 194 RKLQQAFGTAY----LFITHDLRLVQSFCQRVAVMDKGQIVEECD 234 (265)
T ss_pred HHHHHhcCcEE----EEEeCCHHHHHHHhcEEEEEeCCEEEEECC
Confidence 988764 8999 999999999999999999999887665543
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=202.06 Aligned_cols=160 Identities=16% Similarity=0.134 Sum_probs=116.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCcc---------CCcchhcc------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA---------MDIRELIS------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~---------~~~~~~~~------ 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.+. .++.+++.
T Consensus 38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 117 (267)
T PRK15112 38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLN 117 (267)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhc
Confidence 499999999999999999999999999999999999876421 11222221 11111110
Q ss_pred -----------HHHHHHHhCCCCCC-chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++.... ......-+..++|+..+++++.. +|+++|||||....+......+.++|+++
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 195 (267)
T PRK15112 118 TDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALIL--RPKVIIADEALASLDMSMRSQLINLMLEL 195 (267)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHh--CCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 12344555553111 11111123348999999999999 99999999996666667777888899998
Q ss_pred HhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 127 KSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 127 ~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++ |.|| +++||+++++..+||+++++..+..+...
T Consensus 196 ~~~~g~tv----iivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 196 QEKQGISY----IYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHcCcEE----EEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 654 8899 99999999999999999999887765443
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=198.08 Aligned_cols=161 Identities=17% Similarity=0.157 Sum_probs=118.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----ccCCCCc-------cCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYPV-------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~~-------~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.+ ..+..+++.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~ 104 (237)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPK 104 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCH
Confidence 599999999999999999999999999999999999876432 1122222 122222221
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CC
Q 030566 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.+++++++++ +.
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~ 182 (237)
T TIGR00968 105 AKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAV--EPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHV 182 (237)
T ss_pred HHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 1223334444321111111123348899999999999 99999999997777777778888899998765 89
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|| +++||+++++.++||+++.+..+..+..++
T Consensus 183 tv----li~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 214 (237)
T TIGR00968 183 TT----VFVTHDQEEAMEVADRIVVMSNGKIEQIGS 214 (237)
T ss_pred EE----EEEeCCHHHHHhhcCEEEEEECCEEEEecC
Confidence 99 999999999999999999999888766544
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-29 Score=202.51 Aligned_cols=159 Identities=15% Similarity=0.098 Sum_probs=115.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCc--------cCCcchhcc------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV--------AMDIRELIS------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~--------~~~~~~~~~------ 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~ 106 (274)
T PRK13644 27 KGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL 106 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc
Confidence 599999999999999999999999999999999999876421 1122222 112222211
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh
Q 030566 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS 128 (175)
Q Consensus 59 ----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~ 128 (175)
...+++.+++..........-+..++|+..++++++. +|++++||||....+...+..++++++++++
T Consensus 107 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~ 184 (274)
T PRK13644 107 CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTM--EPECLIFDEVTSMLDPDSGIAVLERIKKLHE 184 (274)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 1122333343322111111123348899999999999 9999999999666666677788889999887
Q ss_pred CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 129 RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 129 ~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+|.|| +++||+++++. .||+++++..|..+.++
T Consensus 185 ~g~ti----l~~tH~~~~~~-~~d~v~~l~~G~i~~~g 217 (274)
T PRK13644 185 KGKTI----VYITHNLEELH-DADRIIVMDRGKIVLEG 217 (274)
T ss_pred CCCEE----EEEecCHHHHh-hCCEEEEEECCEEEEEC
Confidence 79999 99999999985 69999999888766543
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=196.97 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=115.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc----ccceeEEeecCccc-----ccCCCCc---------cCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDPAA-----ENFDYPV---------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~----~~G~I~i~g~~~~~-----~~~~~~~---------~~~~~~~~~---- 58 (175)
+|++++|+||||||||||+|+|+|+.+| ++|+|.++|.++.. ..+++.+ .+++.+++.
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~ 90 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLR 90 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHH
Confidence 5999999999999999999999999998 89999999976421 1222222 112211110
Q ss_pred ------------HHHHHHHhCCCCC-CchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 59 ------------LEDVMEELGLGPN-GGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~-~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
..++++.+++... .........+ .++++..++++++. +|++++||||....+......+.+++
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~vllLDEPt~~LD~~~~~~l~~~l 168 (230)
T TIGR02770 91 SLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLL--EPPFLIADEPTTDLDVVNQARVLKLL 168 (230)
T ss_pred HcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHHHHH
Confidence 1233444444310 0011112233 48999999999999 99999999996666666677788889
Q ss_pred HHHHhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 124 DHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 124 ~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++++++ |.|| +++||+++++..++|++++++.|..+.++
T Consensus 169 ~~~~~~~~~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 208 (230)
T TIGR02770 169 RELRQLFGTGI----LLITHDLGVVARIADEVAVMDDGRIVERG 208 (230)
T ss_pred HHHHHhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 988764 8899 99999999999999999999988766543
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-29 Score=188.10 Aligned_cols=137 Identities=20% Similarity=0.167 Sum_probs=108.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCCCCCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNGG 73 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (175)
+|++++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..+++.+ +....+. .++.+++
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~--~~~~~~~-~t~~e~l------- 96 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVP--QDPFLFS-GTIRENI------- 96 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEc--CCchhcc-chHHHHh-------
Confidence 599999999999999999999999999999999999976421 1233333 2222232 3555554
Q ss_pred hhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCc
Q 030566 74 LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPC 153 (175)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~ 153 (175)
-+..+++|..+++++.. +|++++||||....+....+.+.++++++++ +.|+ +++||+++++.. ||+
T Consensus 97 -----LS~G~~~rl~la~al~~--~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~ti----i~~sh~~~~~~~-~d~ 163 (171)
T cd03228 97 -----LSGGQRQRIAIARALLR--DPPILILDEATSALDPETEALILEALRALAK-GKTV----IVIAHRLSTIRD-ADR 163 (171)
T ss_pred -----hCHHHHHHHHHHHHHhc--CCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEE----EEEecCHHHHHh-CCE
Confidence 23358899999999999 9999999999666666677788888988854 6889 999999999987 999
Q ss_pred eeEeccc
Q 030566 154 IVCFCCT 160 (175)
Q Consensus 154 ~~~~~~~ 160 (175)
++++..+
T Consensus 164 ~~~l~~g 170 (171)
T cd03228 164 IIVLDDG 170 (171)
T ss_pred EEEEcCC
Confidence 9998765
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-29 Score=216.76 Aligned_cols=160 Identities=13% Similarity=0.086 Sum_probs=120.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc---------------cCCcchhcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV---------------AMDIRELIS 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~---------------~~~~~~~~~ 58 (175)
+|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ .+++.+++.
T Consensus 28 ~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 107 (490)
T PRK10938 28 AGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQ 107 (490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcc
Confidence 599999999999999999999999999999999998765321 1122222 122333221
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCC
Q 030566 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRN 130 (175)
Q Consensus 59 --------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g 130 (175)
..++++.+++..........-+..|+||..++++++. +|++++||||+...+...+..+.++|++++++|
T Consensus 108 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g 185 (490)
T PRK10938 108 DEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMS--EPDLLILDEPFDGLDVASRQQLAELLASLHQSG 185 (490)
T ss_pred cchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 2345556666432222222223449999999999999 999999999977777777888889999998778
Q ss_pred CcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 131 FNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 131 ~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.|| +++||+++++.++||+++++..+..+.++
T Consensus 186 ~tv----ii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 217 (490)
T PRK10938 186 ITL----VLVLNRFDEIPDFVQFAGVLADCTLAETG 217 (490)
T ss_pred CeE----EEEeCCHHHHHhhCCEEEEEECCEEEEeC
Confidence 999 99999999999999999999988765543
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-29 Score=215.36 Aligned_cols=158 Identities=15% Similarity=0.121 Sum_probs=119.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCc-------cCCcchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ .+++.+++.
T Consensus 29 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 108 (501)
T PRK10762 29 PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVN 108 (501)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcccccc
Confidence 499999999999999999999999999999999999865421 1222222 223322211
Q ss_pred -------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHH
Q 030566 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 59 -------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
..++++.+++..........-+..|+||..+++++.. +|++++||||+...+....+.+.+++++
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~ 186 (501)
T PRK10762 109 RFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSF--ESKVIIMDEPTDALTDTETESLFRVIRE 186 (501)
T ss_pred ccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence 1234555555433222222223348999999999999 9999999999777777777888889999
Q ss_pred HHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 126 LKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 126 l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
++++|.|| +++||+++++..+||+++++..|..+.
T Consensus 187 l~~~~~tv----ii~sHd~~~~~~~~d~i~~l~~G~i~~ 221 (501)
T PRK10762 187 LKSQGRGI----VYISHRLKEIFEICDDVTVFRDGQFIA 221 (501)
T ss_pred HHHCCCEE----EEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 87778999 999999999999999999999887653
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=206.74 Aligned_cols=162 Identities=14% Similarity=0.053 Sum_probs=118.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------------------ccCCCCcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------------ENFDYPVA------- 50 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------------------~~~~~~~~------- 50 (175)
+||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. +.+++.+.
T Consensus 51 ~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~ 130 (320)
T PRK13631 51 KNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF 130 (320)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccc
Confidence 599999999999999999999999999999999999865321 11222221
Q ss_pred -CCcchhcc----------------HHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccc
Q 030566 51 -MDIRELIS----------------LEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIEL 112 (175)
Q Consensus 51 -~~~~~~~~----------------~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~ 112 (175)
.++.+++. ..++++.+++.. ........-+..++||..++++++. +|+++|||||+...+
T Consensus 131 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~--~p~iLLLDEPtsgLD 208 (320)
T PRK13631 131 KDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAI--QPEILIFDEPTAGLD 208 (320)
T ss_pred cchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEECCccCCC
Confidence 12222111 112333344421 1111111123348899999999999 999999999977766
Q ss_pred cccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 113 FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
......+.+++++++++|.|| +++||+++++..+||+++++..|..+.+++.
T Consensus 209 ~~~~~~l~~~L~~l~~~g~Ti----iivtHd~~~~~~~adri~vl~~G~i~~~g~~ 260 (320)
T PRK13631 209 PKGEHEMMQLILDAKANNKTV----FVITHTMEHVLEVADEVIVMDKGKILKTGTP 260 (320)
T ss_pred HHHHHHHHHHHHHHHHCCCEE----EEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 777778888999887779999 9999999999999999999999887765543
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-29 Score=199.98 Aligned_cols=160 Identities=15% Similarity=-0.026 Sum_probs=115.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc-ccccCCCCccCCcchhcc----------------HHHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELIS----------------LEDVM 63 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~-~~~~~~~~~~~~~~~~~~----------------~~~~~ 63 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|... ..+...+.+.+++.+++. ...++
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l 128 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKII 128 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999988531 112222223233333321 11233
Q ss_pred HHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccc
Q 030566 64 EELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQV 143 (175)
Q Consensus 64 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~ 143 (175)
+.+++..........-+..++++..++++++. +|++++||||....+...+..+.+.+.+++++|.|| +++||+
T Consensus 129 ~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~--~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~ti----IiisH~ 202 (264)
T PRK13546 129 EFSELGEFIYQPVKKYSSGMRAKLGFSINITV--NPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTI----FFVSHN 202 (264)
T ss_pred HHcCCchhhcCCcccCCHHHHHHHHHHHHHhh--CCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEE----EEEcCC
Confidence 33344332211111223348899999999999 999999999965555566667778888887778999 999999
Q ss_pred hhhhhcCCCceeEeccchhhHHh
Q 030566 144 CIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++++.++|++++++..|..+..+
T Consensus 203 ~~~i~~~~d~i~~l~~G~i~~~g 225 (264)
T PRK13546 203 LGQVRQFCTKIAWIEGGKLKDYG 225 (264)
T ss_pred HHHHHHHcCEEEEEECCEEEEeC
Confidence 99999999999999887765443
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=202.24 Aligned_cols=159 Identities=13% Similarity=0.059 Sum_probs=116.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc--------cCCcchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV--------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~--------~~~~~~~~~------- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. +.++|.+ ..++.+++.
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~ 111 (279)
T PRK13635 32 EGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG 111 (279)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCC
Confidence 599999999999999999999999999999999999976532 1222222 112222221
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC
Q 030566 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
...+++.+++..........-+.+++++..++++++. +|++++||||....+......+.+++++++++
T Consensus 112 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~ 189 (279)
T PRK13635 112 VPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLAL--QPDIIILDEATSMLDPRGRREVLETVRQLKEQ 189 (279)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc
Confidence 1223333344322211111123348899999999999 99999999996666677777888899998765
Q ss_pred -CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 130 -NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 130 -g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
|.|| +++||+++++.. ||+++++..|..+.++
T Consensus 190 ~~~ti----livsH~~~~~~~-~d~i~~l~~G~i~~~g 222 (279)
T PRK13635 190 KGITV----LSITHDLDEAAQ-ADRVIVMNKGEILEEG 222 (279)
T ss_pred CCCEE----EEEecCHHHHHc-CCEEEEEECCEEEEEC
Confidence 8999 999999999975 9999999887765443
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-29 Score=189.98 Aligned_cols=151 Identities=17% Similarity=0.100 Sum_probs=112.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------ccCCCC-------ccCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYP-------VAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~-------~~~~~~~~~~--------- 58 (175)
+||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +.+++. +..++.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 104 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDE 104 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccHH
Confidence 599999999999999999999999999999999999876421 122222 2223333321
Q ss_pred -HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEE
Q 030566 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (175)
Q Consensus 59 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~ 137 (175)
..++++.+++..........-+..++++..++++++. +|++++||||+...+....+.+.+++++++++|.|+
T Consensus 105 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~ti---- 178 (201)
T cd03231 105 QVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLS--GRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMV---- 178 (201)
T ss_pred HHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE----
Confidence 2334555555432212221123348899999999999 999999999977666777778888998887778999
Q ss_pred eeeccchhhhhcCCCceeEe
Q 030566 138 LLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 138 l~~sH~~~~~~~~~~~~~~~ 157 (175)
+++||+..+..++++++..+
T Consensus 179 ii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 179 VLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEecCchhhhhccceeEec
Confidence 99999999999999987655
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-29 Score=196.60 Aligned_cols=159 Identities=16% Similarity=0.125 Sum_probs=117.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----ccCCCC-------ccCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYP-------VAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~-------~~~~~~~~~~---------- 58 (175)
+||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.. ..+++. +..++.+++.
T Consensus 24 ~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~ 103 (235)
T cd03299 24 RGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDK 103 (235)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCH
Confidence 599999999999999999999999999999999999876421 112222 1223322221
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CC
Q 030566 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
..+.++.+++..........-+..+++|..+++++.. +|++++||||....+....+.+++++++++++ +.
T Consensus 104 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~ 181 (235)
T cd03299 104 KEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVV--NPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV 181 (235)
T ss_pred HHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHc--CCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 1233444554322211111123348899999999999 99999999997777777788888899998654 89
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
|+ +++||+++++.++||+++.+..+..+..
T Consensus 182 ti----li~tH~~~~~~~~~d~i~~l~~G~i~~~ 211 (235)
T cd03299 182 TV----LHVTHDFEEAWALADKVAIMLNGKLIQV 211 (235)
T ss_pred EE----EEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 99 9999999999999999999987766543
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-29 Score=205.46 Aligned_cols=159 Identities=16% Similarity=0.182 Sum_probs=117.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCC---------CccCCcchhcc---
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~---------~~~~~~~~~~~--- 58 (175)
+||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..+++ .+.+++.+++.
T Consensus 46 ~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l 125 (331)
T PRK15079 46 EGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPL 125 (331)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHH
Confidence 599999999999999999999999999999999999976421 11222 22233333321
Q ss_pred ---------------HHHHHHHhCCCCCC-chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030566 59 ---------------LEDVMEELGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..++++.+++.... ......-+..|+||..++++++. +|+++|+|||+...+...+..+.++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~--~P~llilDEPts~LD~~~~~~i~~l 203 (331)
T PRK15079 126 RTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALIL--EPKLIICDEPVSALDVSIQAQVVNL 203 (331)
T ss_pred HHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHHHH
Confidence 12334455553211 11111123348999999999999 9999999999666666667777889
Q ss_pred HHHHHhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 123 VDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 123 l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
|++++++ |.|+ +++||+++.+.++||++++|..|..+-.
T Consensus 204 L~~l~~~~~~ti----l~iTHdl~~~~~~~dri~vl~~G~ive~ 243 (331)
T PRK15079 204 LQQLQREMGLSL----IFIAHDLAVVKHISDRVLVMYLGHAVEL 243 (331)
T ss_pred HHHHHHHcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9998764 8999 9999999999999999999998876644
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-29 Score=203.09 Aligned_cols=159 Identities=14% Similarity=0.042 Sum_probs=114.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------------ccCCCCcc--------CCcchhcc--
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVA--------MDIRELIS-- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------------~~~~~~~~--------~~~~~~~~-- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++|.+. .++.+++.
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~ 115 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFG 115 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHH
Confidence 599999999999999999999999999999999999865320 11222221 12222111
Q ss_pred --------------HHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 59 --------------LEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 59 --------------~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
...+++.+++.. ........-+..++||..++++++. +|++++||||....+....+.+.+++
T Consensus 116 ~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lLlLDEPt~~LD~~~~~~l~~~l 193 (289)
T PRK13645 116 PVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAM--DGNTLVLDEPTGGLDPKGEEDFINLF 193 (289)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 012333344421 1111111123348899999999999 99999999996666667777888899
Q ss_pred HHHHh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 124 DHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 124 ~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+++++ +|.|| +++||+++++.++||+++++..|..+..
T Consensus 194 ~~~~~~~~~ti----iiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 194 ERLNKEYKKRI----IMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHhcCCEE----EEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 98865 48999 9999999999999999999998876544
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-29 Score=193.77 Aligned_cols=151 Identities=15% Similarity=0.042 Sum_probs=114.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC--ccccceeEEeecCcc---cccCCCCccCCcchhccHHHHHHHhCCCCCCchh
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPA---AENFDYPVAMDIRELISLEDVMEELGLGPNGGLI 75 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~--~~~~G~I~i~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 75 (175)
+||+++|+||||||||||+|+|+|+. +|++|+|.++|.++. ...+++.+ +....+...++.+++.+....
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~--q~~~~~~~~tv~~~l~~~~~~--- 106 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVE--QQDVHSPNLTVREALRFSALL--- 106 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEec--ccCccccCCcHHHHHHHHHHH---
Confidence 59999999999999999999999986 489999999997752 12233433 222233333444544321100
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchh-hhhcCCCce
Q 030566 76 YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCI-RFRTLPPCI 154 (175)
Q Consensus 76 ~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~-~~~~~~~~~ 154 (175)
..-+..++++..++++++. +|+++++|||....+....+.+.+.+++++++|.|+ +++||+++ ++.+.+|++
T Consensus 107 -~~LSgGe~qrv~la~al~~--~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~ti----iivtH~~~~~~~~~~d~i 179 (192)
T cd03232 107 -RGLSVEQRKRLTIGVELAA--KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAI----LCTIHQPSASIFEKFDRL 179 (192)
T ss_pred -hcCCHHHhHHHHHHHHHhc--CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEE----EEEEcCChHHHHhhCCEE
Confidence 0123348899999999999 999999999977777777888888999987778999 99999998 578999999
Q ss_pred eEecc-chhh
Q 030566 155 VCFCC-THTV 163 (175)
Q Consensus 155 ~~~~~-~~~~ 163 (175)
+++.. +..+
T Consensus 180 ~~l~~~g~i~ 189 (192)
T cd03232 180 LLLKRGGKTV 189 (192)
T ss_pred EEEcCCCeEE
Confidence 99987 6554
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-30 Score=193.11 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=117.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCccCCcchhccHHH-----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPVAMDIRELISLED----------- 61 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~~~~~~~~~~~~~----------- 61 (175)
.||++||+|||||||||.+.+++|+.+|++|+|.+++.++.. ..++|.+ |..+.|...+
T Consensus 29 ~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLp--QE~SIFr~LtV~dNi~~vlE~ 106 (243)
T COG1137 29 SGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLP--QEASIFRKLTVEDNIMAVLEI 106 (243)
T ss_pred CCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCccccc--ccchHhhcCcHHHHHHHHHhh
Confidence 499999999999999999999999999999999999998643 2455665 4444444323
Q ss_pred ----------------HHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 62 ----------------VMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 62 ----------------~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
+++++.+..-... +..++| ++.|..+||+++. +|++++||||-...+.-....+++++
T Consensus 107 ~~~d~~~~~~~~~l~~LL~ef~i~hlr~~--~a~sLSGGERRR~EIARaLa~--~P~fiLLDEPFAGVDPiaV~dIq~iI 182 (243)
T COG1137 107 REKDLKKAERKEELDALLEEFHITHLRDS--KAYSLSGGERRRVEIARALAA--NPKFILLDEPFAGVDPIAVIDIQRII 182 (243)
T ss_pred hhcchhHHHHHHHHHHHHHHhchHHHhcC--cccccccchHHHHHHHHHHhc--CCCEEEecCCccCCCchhHHHHHHHH
Confidence 3333333221111 112233 7788999999999 99999999992222222233556799
Q ss_pred HHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+.++.+|..| +++.|+..|..+.|||+.++.+|.+.-+++
T Consensus 183 ~~L~~rgiGv----LITDHNVREtL~i~dRaYIi~~G~vla~G~ 222 (243)
T COG1137 183 KHLKDRGIGV----LITDHNVRETLDICDRAYIISDGKVLAEGS 222 (243)
T ss_pred HHHHhCCceE----EEccccHHHHHhhhheEEEEecCeEEecCC
Confidence 9999999999 999999999999999999999998776554
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=189.83 Aligned_cols=143 Identities=13% Similarity=0.026 Sum_probs=111.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------ccCCCCccCCcchhccHHHHHHHhCCCCCCch
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYPVAMDIRELISLEDVMEELGLGPNGGL 74 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 74 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..+++.+ +....+. .++.+++
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~--q~~~~~~-~tv~~~i-------- 95 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLN--QRPYLFD-TTLRNNL-------- 95 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEc--cCCeeec-ccHHHhh--------
Confidence 599999999999999999999999999999999999976421 2233443 2222332 3555655
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCce
Q 030566 75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCI 154 (175)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~ 154 (175)
...-+..++++..++++++. +|++++||||....+....+.+.+.+++++ ++.|| +++||+.+++. .++++
T Consensus 96 -~~~LS~G~~qrv~laral~~--~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~ti----i~~sh~~~~~~-~~d~~ 166 (178)
T cd03247 96 -GRRFSGGERQRLALARILLQ--DAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTL----IWITHHLTGIE-HMDKI 166 (178)
T ss_pred -cccCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEE----EEEecCHHHHH-hCCEE
Confidence 11123358999999999999 999999999966666666778888888885 57899 99999999986 69999
Q ss_pred eEeccchhh
Q 030566 155 VCFCCTHTV 163 (175)
Q Consensus 155 ~~~~~~~~~ 163 (175)
+++..+..+
T Consensus 167 ~~l~~g~i~ 175 (178)
T cd03247 167 LFLENGKII 175 (178)
T ss_pred EEEECCEEE
Confidence 999988765
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-29 Score=199.10 Aligned_cols=162 Identities=14% Similarity=0.082 Sum_probs=116.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccc---cceeEEeecCccc------------ccCCCCc-------cCCcchhcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA------------ENFDYPV-------AMDIRELIS 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~---~G~I~i~g~~~~~------------~~~~~~~-------~~~~~~~~~ 58 (175)
+||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ..++|.+ ..++.+++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 108 (262)
T PRK09984 29 HGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVL 108 (262)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHH
Confidence 59999999999999999999999999886 4999999975421 1122222 122222211
Q ss_pred ------------------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccc
Q 030566 59 ------------------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFT 114 (175)
Q Consensus 59 ------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~ 114 (175)
..++++.+++..........-+..+++|..+++++.. +|++++||||....+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~ 186 (262)
T PRK09984 109 IGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQ--QAKVILADEPIASLDPE 186 (262)
T ss_pred hhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhc--CCCEEEecCccccCCHH
Confidence 1223333343221111111122348899999999999 99999999997766677
Q ss_pred cchHHHHHHHHHHh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 115 HVPVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 115 ~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
..+.+.++|+++++ +|.|| +++||+++++.++|++++++..+..+.++++
T Consensus 187 ~~~~l~~~l~~~~~~~g~tv----ii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~ 237 (262)
T PRK09984 187 SARIVMDTLRDINQNDGITV----VVTLHQVDYALRYCERIVALRQGHVFYDGSS 237 (262)
T ss_pred HHHHHHHHHHHHHHhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 77788889999875 48999 9999999999999999999998887665544
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-29 Score=194.04 Aligned_cols=158 Identities=20% Similarity=0.185 Sum_probs=114.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc---cccceeEEeecCccc----ccCCCC-------ccCCcchhccHH------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA----ENFDYP-------VAMDIRELISLE------ 60 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~---~~~G~I~i~g~~~~~----~~~~~~-------~~~~~~~~~~~~------ 60 (175)
+||+++|+||||||||||+|+|+|+++ |++|+|.++|.++.. +.+++. +.+++.+++...
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~ 111 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLP 111 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcc
Confidence 499999999999999999999999999 999999999876421 122222 222333332210
Q ss_pred -------------H-HHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 61 -------------D-VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 61 -------------~-~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
. .++.+++..........-+..+++|..++++++. +|++++||||....+......+.++++++
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~illlDEP~~gLD~~~~~~~~~~l~~~ 189 (226)
T cd03234 112 RKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW--DPKVLILDEPTSGLDSFTALNLVSTLSQL 189 (226)
T ss_pred cccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh--CCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 0 1222222111111111112348899999999999 99999999996666677777888899998
Q ss_pred HhCCCcEEEEEeeeccch-hhhhcCCCceeEeccchhhH
Q 030566 127 KSRNFNVCAVYLLDSQVC-IRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~-~~~~~~~~~~~~~~~~~~~~ 164 (175)
++++.|+ +++||+. +++.+++|+++++..+..+.
T Consensus 190 ~~~~~ti----ii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 190 ARRNRIV----ILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred HHCCCEE----EEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 7778999 9999999 58999999999999887654
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-29 Score=189.95 Aligned_cols=160 Identities=20% Similarity=0.241 Sum_probs=126.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------------ccCCCCccCCcchhc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELI--------- 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------------~~~~~~~~~~~~~~~--------- 57 (175)
+|.+.++|||||||||||+.+++.+.++++|+|+++|.+... +...+...+++++..
T Consensus 26 ~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSq 105 (252)
T COG4604 26 KGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQ 105 (252)
T ss_pred CCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccC
Confidence 589999999999999999999999999999999999987532 111222222333322
Q ss_pred ---------cHHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 58 ---------SLEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 58 ---------~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
...+.++.+.+..-.. ...+++| |+||.++|..+++ |.++++||||-...++.+.-.+++.++++
T Consensus 106 GRlt~eD~~~I~~aieyl~L~~l~d--ryLd~LSGGQrQRAfIAMVlaQ--dTdyvlLDEPLNNLDmkHsv~iMk~Lrrl 181 (252)
T COG4604 106 GRLTKEDRRIINEAIEYLHLEDLSD--RYLDELSGGQRQRAFIAMVLAQ--DTDYVLLDEPLNNLDMKHSVQIMKILRRL 181 (252)
T ss_pred CCCchHHHHHHHHHHHHhcccchHH--HhHHhcccchhhhhhhheeeec--cCcEEEecCcccccchHHHHHHHHHHHHH
Confidence 2466777777655432 2335555 8999999999999 99999999996666666666788899998
Q ss_pred Hh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
++ -|+|| +++-|++..++-++|.++.+..|.++.|+..
T Consensus 182 a~el~Kti----viVlHDINfAS~YsD~IVAlK~G~vv~~G~~ 220 (252)
T COG4604 182 ADELGKTI----VVVLHDINFASCYSDHIVALKNGKVVKQGSP 220 (252)
T ss_pred HHHhCCeE----EEEEecccHHHhhhhheeeecCCEEEecCCH
Confidence 65 59999 9999999999999999999999999888764
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-29 Score=197.25 Aligned_cols=159 Identities=17% Similarity=0.145 Sum_probs=115.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccc-----cceeEEeecCccc---------ccCCCCcc------CCcchhcc--
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDYPVA------MDIRELIS-- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~-----~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~-- 58 (175)
+||+++|+|+||||||||+|+|+|+++|+ +|+|.++|.++.. +.+++.+. .++.+++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~ 105 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYG 105 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCHHHHHHhH
Confidence 59999999999999999999999999998 9999999876431 12222221 22222221
Q ss_pred ---------------HHHHHHHhCCCC----CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 59 ---------------LEDVMEELGLGP----NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
...+++.+++.. ........-+..++|+..+++++.. +|++++||||....+......+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l 183 (247)
T TIGR00972 106 PRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAV--EPEVLLLDEPTSALDPIATGKI 183 (247)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 122344445531 1111111123348999999999999 9999999999666666667778
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.++++++++ +.|| +++||+++++.++||+++++..|..+.+.
T Consensus 184 ~~~l~~~~~-~~ti----iivsH~~~~~~~~~d~i~~l~~G~i~~~~ 225 (247)
T TIGR00972 184 EELIQELKK-KYTI----VIVTHNMQQAARISDRTAFFYDGELVEYG 225 (247)
T ss_pred HHHHHHHHh-cCeE----EEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 889998866 4889 99999999999999999999988765443
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-29 Score=213.11 Aligned_cols=159 Identities=13% Similarity=0.096 Sum_probs=118.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCc-------cCCcchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 23 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 102 (491)
T PRK10982 23 PHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTK 102 (491)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccccc
Confidence 599999999999999999999999999999999999875421 1222222 122222211
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..|+||..+++++.. +|+++|||||+...+......+.++++++
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~l 180 (491)
T PRK10982 103 GMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSY--NAKIVIMDEPTSSLTEKEVNHLFTIIRKL 180 (491)
T ss_pred ccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 1233444454322212221223348999999999999 99999999997776677778888899998
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+++|.|| +++||+++++..+||+++++..+..+.+
T Consensus 181 ~~~g~tv----ii~tH~~~~~~~~~d~i~~l~~G~i~~~ 215 (491)
T PRK10982 181 KERGCGI----VYISHKMEEIFQLCDEITILRDGQWIAT 215 (491)
T ss_pred HhCCCEE----EEEecCHHHHHHhCCEEEEEECCEEEee
Confidence 8789999 9999999999999999999998876543
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-29 Score=214.09 Aligned_cols=157 Identities=15% Similarity=0.121 Sum_probs=118.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCc----------cCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV----------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~----------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..++|.+ .+++.+++.
T Consensus 288 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~ 367 (510)
T PRK09700 288 RGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRS 367 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccc
Confidence 599999999999999999999999999999999999865321 1223322 122222211
Q ss_pred ---------------------HHHHHHHhCCC-CCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccc
Q 030566 59 ---------------------LEDVMEELGLG-PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHV 116 (175)
Q Consensus 59 ---------------------~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~ 116 (175)
..++++.+++. .........-+..++||..++++++. +|+++|||||+...+....
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~--~p~lLlLDEPt~~LD~~~~ 445 (510)
T PRK09700 368 LKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCC--CPEVIIFDEPTRGIDVGAK 445 (510)
T ss_pred cccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhc--CCCEEEECCCCCCcCHHHH
Confidence 12345556663 22222222223348999999999999 9999999999777777778
Q ss_pred hHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 117 PVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 117 ~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
..+.++|++++++|.|| +++||+++++..+||+++++..|..+
T Consensus 446 ~~l~~~l~~l~~~g~tv----i~vsHd~~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 446 AEIYKVMRQLADDGKVI----LMVSSELPEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred HHHHHHHHHHHHCCCEE----EEEcCCHHHHHhhCCEEEEEECCEEE
Confidence 88888999987779999 99999999999999999999887754
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-29 Score=194.69 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=114.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCCCCCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNGG 73 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (175)
+|++++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..++|.+ +....+. .++.+++.+.....
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~--q~~~~~~-~tv~~~~~~~~~~~ 104 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVL--QDTFLFS-GTIMENIRLGRPNA 104 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEec--CCchhhh-hHHHHHHhccCCCC
Confidence 599999999999999999999999999999999999876431 2233433 2222222 24444433221100
Q ss_pred ------------------------------hhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 74 ------------------------------LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 74 ------------------------------~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
.....-+..+++|..|+++++. +|++++||||....+...++.+.+++
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~--~p~llllDEP~~~LD~~~~~~l~~~l 182 (229)
T cd03254 105 TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR--DPKILILDEATSNIDTETEKLIQEAL 182 (229)
T ss_pred CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHH
Confidence 0001112248899999999999 99999999996666666777888889
Q ss_pred HHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
++++ ++.|| +++||+.+++. .|++++++..+..+.+.++
T Consensus 183 ~~~~-~~~ti----i~~sh~~~~~~-~~d~i~~l~~g~~~~~~~~ 221 (229)
T cd03254 183 EKLM-KGRTS----IIIAHRLSTIK-NADKILVLDDGKIIEEGTH 221 (229)
T ss_pred HHhc-CCCEE----EEEecCHHHHh-hCCEEEEEeCCeEEEeCCH
Confidence 8885 48899 99999999986 4999999999887765543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-29 Score=198.36 Aligned_cols=158 Identities=11% Similarity=0.054 Sum_probs=115.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCcc--------CCcchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA--------MDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~--------~~~~~~~~------- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.+++.+. .+..+++.
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~ 113 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA 113 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcC
Confidence 599999999999999999999999999999999999976421 12233221 11111110
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC
Q 030566 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
...+++.+++..........-+..++++..+++++.. +|+++|||||....+......+.+++++++++
T Consensus 114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 191 (269)
T PRK13648 114 VPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL--NPSVIILDEATSMLDPDARQNLLDLVRKVKSE 191 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 1234455555432211211223348899999999999 99999999996666677777888899988654
Q ss_pred -CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 130 -NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 130 -g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
|.|| +++||+++++.. ||+++++..|..+..
T Consensus 192 ~~~ti----iivtH~~~~~~~-~d~i~~l~~G~i~~~ 223 (269)
T PRK13648 192 HNITI----ISITHDLSEAME-ADHVIVMNKGTVYKE 223 (269)
T ss_pred cCCEE----EEEecCchHHhc-CCEEEEEECCEEEEe
Confidence 8999 999999999986 999999988776533
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=212.84 Aligned_cols=159 Identities=16% Similarity=0.131 Sum_probs=119.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc--ccceeEEeecCccc--------ccCCCCc-------cCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~--~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+++| ++|+|.++|.++.. ..++|.+ .+++.+++.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 109 (506)
T PRK13549 30 AGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEI 109 (506)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccc
Confidence 5999999999999999999999999996 89999999875421 1222222 222222111
Q ss_pred --------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHH
Q 030566 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 --------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..++++.+++..........-+..|+||..++++++. +|++++||||+...+......+.++++
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~~~l~ 187 (506)
T PRK13549 110 TPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNK--QARLLILDEPTASLTESETAVLLDIIR 187 (506)
T ss_pred cccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 2334555565433222222223348999999999999 999999999976666777778888999
Q ss_pred HHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 125 HLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 125 ~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+++++|.|| +++||+++++..+||+++++..|..+..
T Consensus 188 ~l~~~~~tv----i~~tH~~~~~~~~~d~v~~l~~G~i~~~ 224 (506)
T PRK13549 188 DLKAHGIAC----IYISHKLNEVKAISDTICVIRDGRHIGT 224 (506)
T ss_pred HHHHCCCEE----EEEeCcHHHHHHhcCEEEEEECCEEeee
Confidence 987778999 9999999999999999999998876543
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-29 Score=188.04 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=119.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------------ccCCCCccCCcchhcc--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------------~~~~~~~~~~~~~~~~-------- 58 (175)
.||+++|+||||||||||+|.++|...|++|++.++|.+... ++....|.+++++.+.
T Consensus 26 pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~ 105 (259)
T COG4559 26 PGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS 105 (259)
T ss_pred CCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc
Confidence 399999999999999999999999999999999999987421 2222233334444432
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCC----CEEEEeCCCcccccccchHHHHHHH
Q 030566 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDD----DYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 ----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p----~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
...++...++.....+....-+-.++||.-++|.++++..| ++|+||||+...+..+.+...++.+
T Consensus 106 g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR 185 (259)
T COG4559 106 GREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR 185 (259)
T ss_pred CCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHH
Confidence 12233333333222222222223389999999999986444 4999999976666777888888999
Q ss_pred HHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 125 HLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 125 ~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
+++.+|..| +.+-||+..++.|||++++|..|+++-
T Consensus 186 ~la~~g~~V----~~VLHDLNLAA~YaDrivll~~Grv~a 221 (259)
T COG4559 186 QLAREGGAV----LAVLHDLNLAAQYADRIVLLHQGRVIA 221 (259)
T ss_pred HHHhcCCcE----EEEEccchHHHHhhheeeeeeCCeEee
Confidence 999999999 889999999999999999999988764
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-29 Score=196.92 Aligned_cols=161 Identities=15% Similarity=0.077 Sum_probs=117.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC-----ccc-----------ccCCCCcc---------CCcch
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----PAA-----------ENFDYPVA---------MDIRE 55 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-----~~~-----------~~~~~~~~---------~~~~~ 55 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.+ +.. ..++|.+. .+..+
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 110 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGG 110 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHH
Confidence 599999999999999999999999999999999999976 321 11233221 11111
Q ss_pred hcc-----------------HHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccch
Q 030566 56 LIS-----------------LEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVP 117 (175)
Q Consensus 56 ~~~-----------------~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~ 117 (175)
++. ..++++.+++.. ........-+..++||..+++++.. +|++++||||....+.....
T Consensus 111 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~--~p~llllDEPt~~LD~~~~~ 188 (258)
T PRK11701 111 NIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVT--HPRLVFMDEPTGGLDVSVQA 188 (258)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHH
Confidence 110 123445555532 1111111123348999999999999 99999999996666666777
Q ss_pred HHHHHHHHHHhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 118 VLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 118 ~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.+.+.+++++++ |.|| +++||+++++.++||+++++..+..+..++
T Consensus 189 ~l~~~l~~~~~~~~~ti----i~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 189 RLLDLLRGLVRELGLAV----VIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCcEE----EEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 888889888654 8999 999999999999999999999988765543
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-29 Score=195.45 Aligned_cols=155 Identities=15% Similarity=0.111 Sum_probs=111.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCCCCC-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNG- 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 72 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+++.+ +....+. .++.+++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~--q~~~~~~-~tv~~nl~~~~~~~ 103 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVL--QENVLFN-RSIRDNIALADPGM 103 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEc--CCchhcc-chHHHHhhccCCCC
Confidence 599999999999999999999999999999999999976421 1233332 1111111 1333333221100
Q ss_pred ---------------------------chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 73 ---------------------------GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 73 ---------------------------~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
........+ .++|+..+++++.. +|++++||||....+....+.+.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~~~l 181 (237)
T cd03252 104 SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIH--NPRILIFDEATSALDYESEHAIMRNM 181 (237)
T ss_pred CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 000011223 38899999999999 99999999996666677777888889
Q ss_pred HHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++++ +|.|| +++||+++++. .|+++++++.+..+.+.
T Consensus 182 ~~~~-~~~ti----ii~sH~~~~~~-~~d~v~~l~~G~i~~~~ 218 (237)
T cd03252 182 HDIC-AGRTV----IIIAHRLSTVK-NADRIIVMEKGRIVEQG 218 (237)
T ss_pred HHhc-CCCEE----EEEeCCHHHHH-hCCEEEEEECCEEEEEc
Confidence 8886 48899 99999999995 69999999988776543
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-29 Score=188.31 Aligned_cols=141 Identities=13% Similarity=0.074 Sum_probs=100.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc---------ccCCCCcc--------CCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVA--------MDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------~~~~~~~~--------~~~~~~~~----- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. +.+++.+. .++.+++.
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~ 96 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLN 96 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHHH
Confidence 599999999999999999999999999999999999876421 12222221 12222221
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..++||..++++++. +|++++||||....+....+.+.+++++++
T Consensus 97 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~~~l~~~~ 174 (190)
T TIGR01166 97 LGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAM--RPDVLLLDEPTAGLDPAGREQMLAILRRLR 174 (190)
T ss_pred cCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 1123333444322111111122348899999999999 999999999966666777778888999987
Q ss_pred hCCCcEEEEEeeeccchhhh
Q 030566 128 SRNFNVCAVYLLDSQVCIRF 147 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~ 147 (175)
++|.|| +++||+++++
T Consensus 175 ~~~~ti----li~sH~~~~~ 190 (190)
T TIGR01166 175 AEGMTV----VISTHDVDLA 190 (190)
T ss_pred HcCCEE----EEEeeccccC
Confidence 778999 9999998764
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=197.34 Aligned_cols=157 Identities=11% Similarity=0.103 Sum_probs=113.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----ccCCCCcc---------CCcchhc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDYPVA---------MDIRELI---------- 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----~~~~~~~~---------~~~~~~~---------- 57 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++|.+. ....+++
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~ 111 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGW 111 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheeccccccccc
Confidence 599999999999999999999999999999999999875321 11222211 0111110
Q ss_pred ----------cHHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 58 ----------SLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 58 ----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
....+++.+++..........-+.+++++..+++++.. +|++++||||....+......+.++|++++
T Consensus 112 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~--~p~llllDEPt~~LD~~~~~~l~~~L~~~~ 189 (272)
T PRK15056 112 LRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQ--QGQVILLDEPFTGVDVKTEARIISLLRELR 189 (272)
T ss_pred ccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 01234455555432212221223348899999999999 999999999966666777778888999987
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
++|.|| +++||+++++.++|++++++ .|..+.
T Consensus 190 ~~g~tv----iivsH~~~~~~~~~d~v~~~-~G~i~~ 221 (272)
T PRK15056 190 DEGKTM----LVSTHNLGSVTEFCDYTVMV-KGTVLA 221 (272)
T ss_pred hCCCEE----EEEeCCHHHHHHhCCEEEEE-CCEEEe
Confidence 778999 99999999999999999877 455443
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-29 Score=192.91 Aligned_cols=155 Identities=15% Similarity=0.077 Sum_probs=113.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc---cccceeEEeecCccc------ccCCCCccCCcchhccHHHHHHHhCCCCC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA------ENFDYPVAMDIRELISLEDVMEELGLGPN 71 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~---~~~G~I~i~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (175)
+||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..+++.+ +....+...++.+++.+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~--q~~~~~~~~tv~~~l~~~~~ 109 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVS--EEDVHFPTLTVRETLDFALR 109 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEe--cccccCCCCcHHHHHhhhhh
Confidence 599999999999999999999999999 899999999976532 1223333 22222333345555543321
Q ss_pred C--chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CCcEEEEEee-eccchhhh
Q 030566 72 G--GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAVYLL-DSQVCIRF 147 (175)
Q Consensus 72 ~--~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~tvli~~l~-~sH~~~~~ 147 (175)
. ......-+..++++..++++++. +|++++||||....+...++.+.+++++++++ +.|+ ++ ++|+.+++
T Consensus 110 ~~~~~~~~~LS~Ge~qrl~laral~~--~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~----ii~~~h~~~~~ 183 (202)
T cd03233 110 CKGNEFVRGISGGERKRVSIAEALVS--RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTT----FVSLYQASDEI 183 (202)
T ss_pred hccccchhhCCHHHHHHHHHHHHHhh--CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEE----EEEEcCCHHHH
Confidence 1 11111123348999999999999 99999999996666677777888899998665 5665 44 56667899
Q ss_pred hcCCCceeEeccchhh
Q 030566 148 RTLPPCIVCFCCTHTV 163 (175)
Q Consensus 148 ~~~~~~~~~~~~~~~~ 163 (175)
.++||+++++..|..+
T Consensus 184 ~~~~d~i~~l~~G~i~ 199 (202)
T cd03233 184 YDLFDKVLVLYEGRQI 199 (202)
T ss_pred HHhCCeEEEEECCEEE
Confidence 9999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-29 Score=199.91 Aligned_cols=160 Identities=14% Similarity=0.138 Sum_probs=116.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCcc--------CCcchhcc------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPVA--------MDIRELIS------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~~--------~~~~~~~~------ 58 (175)
+||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +.+++.+. .++.+++.
T Consensus 35 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~ 114 (280)
T PRK13633 35 KGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL 114 (280)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc
Confidence 499999999999999999999999999999999999876531 12233221 01111110
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh
Q 030566 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS 128 (175)
Q Consensus 59 ----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~ 128 (175)
...+++.+++..........-+.+++++..+++++.. +|++++||||....+...+..+.++++++++
T Consensus 115 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~~~l~~l~~ 192 (280)
T PRK13633 115 GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM--RPECIIFDEPTAMLDPSGRREVVNTIKELNK 192 (280)
T ss_pred CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 1223333444322211112223348899999999999 9999999999777667777788889999865
Q ss_pred -CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 129 -RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 129 -~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+|.|| +++||+++++.. ||+++++..|..+.+++
T Consensus 193 ~~g~ti----llvtH~~~~~~~-~d~v~~l~~G~i~~~g~ 227 (280)
T PRK13633 193 KYGITI----ILITHYMEEAVE-ADRIIVMDSGKVVMEGT 227 (280)
T ss_pred hcCCEE----EEEecChHHHhc-CCEEEEEECCEEEEecC
Confidence 48999 999999999986 99999998887765544
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=193.57 Aligned_cols=155 Identities=15% Similarity=0.117 Sum_probs=113.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCCCCC-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNG- 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 72 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++|.+ +....+. .++.+++.+....
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~--q~~~~~~-~tv~e~l~~~~~~~ 104 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVS--QEPVLFD-GTIAENIRYGKPDA 104 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEEC--Cchhhhh-hhHHHHhhccCCCC
Confidence 599999999999999999999999999999999999976421 1233333 1111221 2344443322110
Q ss_pred -----------------------------chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 73 -----------------------------GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 73 -----------------------------~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
......-+..++++..++++++. +|++++||||....+...++.+.+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEP~~gLD~~~~~~l~~~l 182 (238)
T cd03249 105 TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLR--NPKILLLDEATSALDAESEKLVQEAL 182 (238)
T ss_pred CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHH
Confidence 00000112237889999999999 99999999997666677777888899
Q ss_pred HHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++++ +|.|| +++||+++++. .||++++++.+..+.++
T Consensus 183 ~~~~-~g~~v----i~~sh~~~~~~-~~d~v~~l~~G~i~~~~ 219 (238)
T cd03249 183 DRAM-KGRTT----IVIAHRLSTIR-NADLIAVLQNGQVVEQG 219 (238)
T ss_pred HHhc-CCCEE----EEEeCCHHHHh-hCCEEEEEECCEEEEeC
Confidence 8886 78999 99999999997 89999999998776543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-29 Score=198.98 Aligned_cols=158 Identities=13% Similarity=0.111 Sum_probs=113.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc--------cCCcchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV--------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~--------~~~~~~~~~------- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. +.++|.+ ..++.+++.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~ 113 (271)
T PRK13632 34 EGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK 113 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcC
Confidence 599999999999999999999999999999999999976532 1223322 112222221
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC
Q 030566 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
..++++.+++..........-+..++|+..++++++. +|++++||||....+....+.+.+++++++++
T Consensus 114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~ 191 (271)
T PRK13632 114 VPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLAL--NPEIIIFDESTSMLDPKGKREIKKIMVDLRKT 191 (271)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 0122333333221111111123348899999999999 99999999996666666777888899998765
Q ss_pred -CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 130 -NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 130 -g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+.|| +++||+++++. .||+++++..|..+.+
T Consensus 192 ~~~ti----ii~sH~~~~~~-~~d~v~~l~~G~i~~~ 223 (271)
T PRK13632 192 RKKTL----ISITHDMDEAI-LADKVIVFSEGKLIAQ 223 (271)
T ss_pred cCcEE----EEEEechhHHh-hCCEEEEEECCEEEEe
Confidence 5899 99999999986 7999999988776543
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-29 Score=193.96 Aligned_cols=156 Identities=17% Similarity=0.122 Sum_probs=112.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCCCC--
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPN-- 71 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 71 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.+++.+ +....+. .++.+++.+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~--q~~~~~~-~tv~enl~~~~~~~ 103 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVS--QDVFLFN-DTVAENIAYGRPGA 103 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeC--CCCeecc-ccHHHHhhccCCCC
Confidence 599999999999999999999999999999999999865421 1223332 1111111 122333222110
Q ss_pred ----------------------------CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 72 ----------------------------GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 72 ----------------------------~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
.......-+..++|+..++++++. +|++++||||....+....+.+.+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~~~l 181 (234)
T cd03251 104 TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLK--DPPILILDEATSALDTESERLVQAAL 181 (234)
T ss_pred CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHH
Confidence 000011112348899999999999 99999999996666677777888899
Q ss_pred HHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++++ +.|| +++||+++++.. ||+++++..+..+.+.+
T Consensus 182 ~~~~~-~~ti----i~~sh~~~~~~~-~d~v~~l~~G~i~~~~~ 219 (234)
T cd03251 182 ERLMK-NRTT----FVIAHRLSTIEN-ADRIVVLEDGKIVERGT 219 (234)
T ss_pred HHhcC-CCEE----EEEecCHHHHhh-CCEEEEecCCeEeeeCC
Confidence 88864 7899 999999999976 99999999988765443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=191.06 Aligned_cols=158 Identities=15% Similarity=0.074 Sum_probs=113.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~ 111 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQ 111 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhhcCCC
Confidence 599999999999999999999999999999999999865421 1222222 112222221
Q ss_pred -----HHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCC
Q 030566 59 -----LEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNF 131 (175)
Q Consensus 59 -----~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~ 131 (175)
..++++.+++.. ........-+.+++++..+++++.. +|++++||||....+....+.+.++++++++ .|.
T Consensus 112 ~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 189 (225)
T PRK10247 112 PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQF--MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNI 189 (225)
T ss_pred hHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 123445555531 1111111123348899999999999 9999999999666667777788889999865 488
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
|| +++||+.+++. .||+++.+......+|
T Consensus 190 tv----ii~sh~~~~~~-~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 190 AV----LWVTHDKDEIN-HADKVITLQPHAGEMQ 218 (225)
T ss_pred EE----EEEECChHHHH-hCCEEEEEecccchHh
Confidence 99 99999999996 6999999964444444
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=190.25 Aligned_cols=154 Identities=15% Similarity=0.146 Sum_probs=112.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCCCc-------cCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~-------~~~~~~~~~----- 58 (175)
+|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..+++.+ ..+..+++.
T Consensus 30 ~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~ 109 (220)
T TIGR02982 30 PGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALEL 109 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHh
Confidence 599999999999999999999999999999999999876421 1122222 122222111
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+.+++++..++++++. +|++++||||....+....+.+..+++++
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~--~p~illlDEP~~~LD~~~~~~l~~~l~~~ 187 (220)
T TIGR02982 110 QPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVH--RPKLVLADEPTAALDSKSGRDVVELMQKL 187 (220)
T ss_pred ccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 2334455555432222222223348999999999999 99999999996666666777788899988
Q ss_pred Hh-CCCcEEEEEeeeccchhhhhcCCCceeEeccch
Q 030566 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
++ ++.|| +++||+++ ..++||+++.+..+.
T Consensus 188 ~~~~~~ti----i~~sh~~~-~~~~~d~v~~l~~g~ 218 (220)
T TIGR02982 188 AREQGCTI----LIVTHDNR-ILDVADRIVHMEDGK 218 (220)
T ss_pred HHHcCCEE----EEEeCCHH-HHhhCCEEEEEECCE
Confidence 65 58999 99999998 468999999998764
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=189.50 Aligned_cols=151 Identities=15% Similarity=0.124 Sum_probs=113.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcc--CccccceeEEeecCccc--------ccCCCCccCCcchhccHHHHHHHhCCCC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDYPVAMDIRELISLEDVMEELGLGP 70 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl--~~~~~G~I~i~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (175)
+||+++|+|+||||||||+++|+|+ .+|++|+|.++|.++.. ..+++.+ +....+...++.+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~--q~~~~~~~~~~~~~l~--- 99 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAF--QYPPEIPGVKNADFLR--- 99 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEee--cChhhccCccHHHHHh---
Confidence 4999999999999999999999999 57999999999976532 1133333 2222222223333331
Q ss_pred CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhc-
Q 030566 71 NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRT- 149 (175)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~- 149 (175)
.....-+..++++..++++++. +|++++||||....+....+.+.++++++++++.|| +++||+++.+.+
T Consensus 100 ---~~~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~ti----ii~sh~~~~~~~~ 170 (200)
T cd03217 100 ---YVNEGFSGGEKKRNEILQLLLL--EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSV----LIITHYQRLLDYI 170 (200)
T ss_pred ---hccccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEE----EEEecCHHHHHHh
Confidence 0001123358899999999999 999999999966666667778888999987778999 999999999988
Q ss_pred CCCceeEeccchhhHH
Q 030566 150 LPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 150 ~~~~~~~~~~~~~~~~ 165 (175)
++|+++++..+..+..
T Consensus 171 ~~d~i~~l~~G~i~~~ 186 (200)
T cd03217 171 KPDRVHVLYDGRIVKS 186 (200)
T ss_pred hCCEEEEEECCEEEEE
Confidence 7999999998876543
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=212.61 Aligned_cols=158 Identities=13% Similarity=0.103 Sum_probs=119.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCcc----------CCcchhc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPVA----------MDIRELI----- 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~~----------~~~~~~~----- 57 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..++|.+. .++.+++
T Consensus 288 ~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~ 367 (510)
T PRK15439 288 AGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTH 367 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhh
Confidence 599999999999999999999999999999999999865321 12333321 1221111
Q ss_pred --------------cHHHHHHHhCCC-CCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030566 58 --------------SLEDVMEELGLG-PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 58 --------------~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
...++++.+++. .........-+..++||..+++++.. +|++||||||+...+....+.+.++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~--~p~lLlLDEPt~gLD~~~~~~l~~~ 445 (510)
T PRK15439 368 NRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEA--SPQLLIVDEPTRGVDVSARNDIYQL 445 (510)
T ss_pred hhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhh--CCCEEEECCCCcCcChhHHHHHHHH
Confidence 012345556664 22222222223348999999999999 9999999999777777778888889
Q ss_pred HHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 123 VDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
|++++++|.|| +++||+++++.++||++++++.+..+.
T Consensus 446 l~~l~~~g~ti----IivsHd~~~i~~~~d~i~~l~~G~i~~ 483 (510)
T PRK15439 446 IRSIAAQNVAV----LFISSDLEEIEQMADRVLVMHQGEISG 483 (510)
T ss_pred HHHHHhCCCEE----EEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99998789999 999999999999999999999887653
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=201.98 Aligned_cols=160 Identities=16% Similarity=0.118 Sum_probs=118.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCCCc---------cCCcchhcc---
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV---------AMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~---------~~~~~~~~~--- 58 (175)
+||++||+|+||||||||+++|+|+++|++|+|.++|.++.. ..+++.+ .+++.+++.
T Consensus 40 ~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~ 119 (327)
T PRK11308 40 RGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPL 119 (327)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHH
Confidence 599999999999999999999999999999999999976421 1222222 122222211
Q ss_pred --------------HHHHHHHhCCCCCC-chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 59 --------------LEDVMEELGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 59 --------------~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
..++++.+++.... ......-+..|+||..++++++. +|++||+|||+...+...+..+.++|
T Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~--~P~lLilDEPts~LD~~~~~~i~~lL 197 (327)
T PRK11308 120 LINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALML--DPDVVVADEPVSALDVSVQAQVLNLM 197 (327)
T ss_pred HHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHc--CCCEEEEECCCccCCHHHHHHHHHHH
Confidence 23455556664211 11111123348999999999999 99999999996666666677788899
Q ss_pred HHHHh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 124 DHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 124 ~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++++ .|.|+ +++||++..+.++||++++|..|..+-.+
T Consensus 198 ~~l~~~~g~ti----l~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 198 MDLQQELGLSY----VFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99866 48999 99999999999999999999988776443
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=191.33 Aligned_cols=152 Identities=19% Similarity=0.117 Sum_probs=109.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCC----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLG---- 69 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~---- 69 (175)
+|++++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+++.+ +....+. .++.+++.+.
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~--q~~~~~~-~tv~e~l~~~~~~~ 105 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVP--QDVTLFY-GTLRDNITLGAPLA 105 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeC--CCCcccc-chHHHHhhcCCCCC
Confidence 599999999999999999999999999999999999875421 1233333 1111221 2333333221
Q ss_pred ---------------CCCchh-----------hhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 70 ---------------PNGGLI-----------YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 70 ---------------~~~~~~-----------~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
...... ...-+..+++|..++++++. +|++++||||+...+....+.+.++|
T Consensus 106 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l 183 (220)
T cd03245 106 DDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN--DPPILLLDEPTSAMDMNSEERLKERL 183 (220)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHH
Confidence 100000 00112238899999999999 99999999997776677777888899
Q ss_pred HHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
++++++ .|| +++||+++++ ++||+++.+..+..+
T Consensus 184 ~~~~~~-~ti----i~~sH~~~~~-~~~d~v~~l~~g~i~ 217 (220)
T cd03245 184 RQLLGD-KTL----IIITHRPSLL-DLVDRIIVMDSGRIV 217 (220)
T ss_pred HHhcCC-CEE----EEEeCCHHHH-HhCCEEEEEeCCeEe
Confidence 988664 788 9999999987 699999999887654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-28 Score=187.66 Aligned_cols=150 Identities=18% Similarity=0.196 Sum_probs=108.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----ccCCCC-------ccCCcchhcc-----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDYP-------VAMDIRELIS----------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----~~~~~~-------~~~~~~~~~~----------- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.+... ..+++. +..++.+++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~ 106 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEEL 106 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHH
Confidence 599999999999999999999999999999999999876321 112222 1223333321
Q ss_pred -HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEE
Q 030566 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (175)
Q Consensus 59 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~ 137 (175)
..++++.+++..........-+..+++|..+++++.. +|++++||||....+......+.+++++++++|.|+
T Consensus 107 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti---- 180 (207)
T PRK13539 107 DIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVS--NRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIV---- 180 (207)
T ss_pred HHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEE----
Confidence 2334455555432111111223348899999999999 999999999966666667778888999887779999
Q ss_pred eeeccchhhhhcCCCceeEec
Q 030566 138 LLDSQVCIRFRTLPPCIVCFC 158 (175)
Q Consensus 138 l~~sH~~~~~~~~~~~~~~~~ 158 (175)
+++||+.+++.. ++++-+.
T Consensus 181 ii~sH~~~~~~~--~~~~~~~ 199 (207)
T PRK13539 181 IAATHIPLGLPG--ARELDLG 199 (207)
T ss_pred EEEeCCchhhcc--CcEEeec
Confidence 999999999987 6665553
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=194.10 Aligned_cols=158 Identities=16% Similarity=0.108 Sum_probs=115.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC-----ccc-----------ccCCCCcc---------CCcch
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----PAA-----------ENFDYPVA---------MDIRE 55 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-----~~~-----------~~~~~~~~---------~~~~~ 55 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.+ +.. +.+++.+. .+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 107 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGA 107 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHH
Confidence 599999999999999999999999999999999999865 211 11222221 11111
Q ss_pred hc-----------------cHHHHHHHhCCCCCCchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccc
Q 030566 56 LI-----------------SLEDVMEELGLGPNGGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHV 116 (175)
Q Consensus 56 ~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~ 116 (175)
++ ...++++.+++.... .......+ .++||..++++++. +|++++||||....+....
T Consensus 108 ~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~LSgG~~qrv~laral~~--~p~vlllDEP~~~LD~~~~ 184 (253)
T TIGR02323 108 NIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTR-IDDLPRAFSGGMQQRLQIARNLVT--RPRLVFMDEPTGGLDVSVQ 184 (253)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHcCCChhh-hhcCchhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHH
Confidence 11 012334445553111 11122233 48999999999999 9999999999666666677
Q ss_pred hHHHHHHHHHHh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 117 PVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 117 ~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
..+.++++++.+ .|.|+ +++||+++++.++++++++++.+..+..
T Consensus 185 ~~l~~~l~~~~~~~~~ti----i~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 185 ARLLDLLRGLVRDLGLAV----IIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHHHHHHHHHHHhcCCEE----EEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 788888888765 48999 9999999999999999999998876544
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=194.00 Aligned_cols=153 Identities=16% Similarity=0.160 Sum_probs=111.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc---ccccCCCCcc--CCcchhc---------cHHHHHHHh
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAENFDYPVA--MDIRELI---------SLEDVMEEL 66 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~---~~~~~~~~~~--~~~~~~~---------~~~~~~~~~ 66 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.+++... ..+...+.+. .+..+++ ....+++.+
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRV 108 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHc
Confidence 5999999999999999999999999999999999976321 0111111111 1222211 123445555
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CCcEEEEEeeeccchh
Q 030566 67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCI 145 (175)
Q Consensus 67 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~ 145 (175)
++..........-+..++++..+++++.. +|++++||||....+......+.++|++++++ |.|| +++||+++
T Consensus 109 gl~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~ti----iivsH~~~ 182 (251)
T PRK09544 109 QAGHLIDAPMQKLSGGETQRVLLARALLN--RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAV----LMVSHDLH 182 (251)
T ss_pred CChHHHhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEE----EEEecCHH
Confidence 55432211221223348999999999999 99999999996666666777888889888765 8999 99999999
Q ss_pred hhhcCCCceeEecc
Q 030566 146 RFRTLPPCIVCFCC 159 (175)
Q Consensus 146 ~~~~~~~~~~~~~~ 159 (175)
++.++|++++++..
T Consensus 183 ~i~~~~d~i~~l~~ 196 (251)
T PRK09544 183 LVMAKTDEVLCLNH 196 (251)
T ss_pred HHHHhCCEEEEECC
Confidence 99999999999975
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=196.69 Aligned_cols=154 Identities=21% Similarity=0.184 Sum_probs=115.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------------------ccCCCCccCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------------------~~~~~~~~~~~~~~~~---- 58 (175)
+|||++|.|-+|||||||+|++.++++|++|+|.++|.++.. +++++.|..++.++..
T Consensus 53 ~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe 132 (386)
T COG4175 53 EGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 132 (386)
T ss_pred CCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee
Confidence 599999999999999999999999999999999999988532 2333344434433332
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchH-----H
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV-----L 119 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~-----~ 119 (175)
..++++.+++..+.... ..++| ++||.-|||++.. +|+++++||| ++++|. +
T Consensus 133 v~Gv~~~er~~~a~~~l~~VgL~~~~~~y--p~eLSGGMqQRVGLARAla~--~~~IlLMDEa-----FSALDPLIR~~m 203 (386)
T COG4175 133 VQGVPKAEREERALEALELVGLEGYADKY--PNELSGGMQQRVGLARALAN--DPDILLMDEA-----FSALDPLIRTEM 203 (386)
T ss_pred ecCCCHHHHHHHHHHHHHHcCchhhhhcC--cccccchHHHHHHHHHHHcc--CCCEEEecCc-----hhhcChHHHHHH
Confidence 23444555554443222 23444 8999999999999 9999999999 666553 3
Q ss_pred HHHHHHH-HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 120 RNFVDHL-KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l-~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+.-|.++ ++-++|| +++||+++|+.++-+||.+|..|.+|-+++
T Consensus 204 QdeLl~Lq~~l~KTI----vFitHDLdEAlriG~rIaimkdG~ivQ~Gt 248 (386)
T COG4175 204 QDELLELQAKLKKTI----VFITHDLDEALRIGDRIAIMKDGEIVQVGT 248 (386)
T ss_pred HHHHHHHHHHhCCeE----EEEecCHHHHHhccceEEEecCCeEEEeCC
Confidence 3344455 4558999 999999999999999999999998775543
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=210.54 Aligned_cols=157 Identities=17% Similarity=0.155 Sum_probs=118.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCc-------cCCcchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++|.+ ..++.+++.
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 108 (501)
T PRK11288 29 AGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHK 108 (501)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccc
Confidence 599999999999999999999999999999999999865421 1222222 122222111
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..|+||..+++++.. +|++++||||+...+....+.+.++++++
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 186 (501)
T PRK11288 109 GGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALAR--NARVIAFDEPTSSLSAREIEQLFRVIREL 186 (501)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHh--CCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 1234555555432222222223348999999999999 99999999997777777778888899998
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+++|.|| +++||+++++..+||+++++..|..+
T Consensus 187 ~~~g~ti----iiitHd~~~~~~~~d~i~~l~~G~i~ 219 (501)
T PRK11288 187 RAEGRVI----LYVSHRMEEIFALCDAITVFKDGRYV 219 (501)
T ss_pred HhCCCEE----EEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 7789999 99999999999999999999988755
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-29 Score=186.12 Aligned_cols=165 Identities=16% Similarity=0.178 Sum_probs=120.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc---------ccCCCCccCCcchhcc-------------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVAMDIRELIS------------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------~~~~~~~~~~~~~~~~------------- 58 (175)
.||.++++||+|||||||+++++|+.+|+.|+|.++|.++.. ++.+..|.++..++..
T Consensus 30 ~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R 109 (259)
T COG4525 30 SGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQR 109 (259)
T ss_pred CCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHH
Confidence 489999999999999999999999999999999999987643 2334444444444443
Q ss_pred ---HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCC-CcccccccchHHHHH-HHHHHhCCCcE
Q 030566 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCP-GQIELFTHVPVLRNF-VDHLKSRNFNV 133 (175)
Q Consensus 59 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP-~~~~~~~~~~~~~~~-l~~l~~~g~tv 133 (175)
..+.+..+++.....+....-+-.++||.-++|++.- +|++|+|||| +..+... ++.++.+ ++-|++.|+.+
T Consensus 110 ~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~--eP~~LlLDEPfgAlDa~t-Re~mQelLldlw~~tgk~~ 186 (259)
T COG4525 110 REIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAV--EPQLLLLDEPFGALDALT-REQMQELLLDLWQETGKQV 186 (259)
T ss_pred HHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhc--CcceEeecCchhhHHHHH-HHHHHHHHHHHHHHhCCeE
Confidence 1234444455443322222223348999999999999 9999999999 3333332 3445555 45567889999
Q ss_pred EEEEeeeccchhhhhcCCCceeEeccchhhHHhhhhccc
Q 030566 134 CAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYSFLF 172 (175)
Q Consensus 134 li~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (175)
+++||+++|+.=+++++++|++++..+...+...|
T Consensus 187 ----lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~df 221 (259)
T COG4525 187 ----LLITHDIEEALFLATRLVVLSPGPGRVVERLPLDF 221 (259)
T ss_pred ----EEEeccHHHHHhhhheeEEecCCCceeeEecCCCH
Confidence 99999999999999999999999877665544433
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=210.72 Aligned_cols=159 Identities=15% Similarity=0.029 Sum_probs=118.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-cccCCCCccCCcchhcc----------------HHHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-AENFDYPVAMDIRELIS----------------LEDVM 63 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-~~~~~~~~~~~~~~~~~----------------~~~~~ 63 (175)
+|++++|+||||||||||+++|+|+.+|++|+|.++|.+.. .....+.+.+++.+++. ...++
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elL 128 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEII 128 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999886521 11122223334433321 11344
Q ss_pred HHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccc
Q 030566 64 EELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQV 143 (175)
Q Consensus 64 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~ 143 (175)
+.+++..........-+.+++||..+++++.. +|++++||||....+....+.+.++|++++++|.|| +++||+
T Consensus 129 e~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~--~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TI----IIVSHd 202 (549)
T PRK13545 129 EFADIGKFIYQPVKTYSSGMKSRLGFAISVHI--NPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTI----FFISHS 202 (549)
T ss_pred HHcCChhHhhCCcccCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEE----EEEECC
Confidence 45555432222222223448999999999999 999999999966666666777888898887778999 999999
Q ss_pred hhhhhcCCCceeEeccchhhHH
Q 030566 144 CIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
++++.++||+++++..|..+..
T Consensus 203 l~~i~~l~DrIivL~~GkIv~~ 224 (549)
T PRK13545 203 LSQVKSFCTKALWLHYGQVKEY 224 (549)
T ss_pred HHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999988876544
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-28 Score=193.94 Aligned_cols=161 Identities=15% Similarity=0.119 Sum_probs=116.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc----ccceeEEeecCccc-----ccCCCCcc---------CCcchhc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDPAA-----ENFDYPVA---------MDIRELI----- 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~----~~G~I~i~g~~~~~-----~~~~~~~~---------~~~~~~~----- 57 (175)
+||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.. +.++|.+. .+..++.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~ 107 (254)
T PRK10418 28 RGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCL 107 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHH
Confidence 5999999999999999999999999999 99999999876421 11222221 1111110
Q ss_pred ---------cHHHHHHHhCCCCCC---chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHH
Q 030566 58 ---------SLEDVMEELGLGPNG---GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 58 ---------~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
...++++.+++.... ......-+..++|+..++++++. +|+++|||||....+......+.++|++
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lLlLDEPt~~LD~~~~~~l~~~L~~ 185 (254)
T PRK10418 108 ALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLC--EAPFIIADEPTTDLDVVAQARILDLLES 185 (254)
T ss_pred HcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 012344555554311 11111123348999999999999 9999999999666666667778888998
Q ss_pred HHh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 126 LKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 126 l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++ .|.|| +++||+++++.++||+++++..+..+.+++
T Consensus 186 ~~~~~g~ti----l~~sH~~~~~~~~~d~v~~l~~G~i~~~~~ 224 (254)
T PRK10418 186 IVQKRALGM----LLVTHDMGVVARLADDVAVMSHGRIVEQGD 224 (254)
T ss_pred HHHhcCcEE----EEEecCHHHHHHhCCEEEEEECCEEEEecC
Confidence 865 48999 999999999999999999999887765443
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-28 Score=201.00 Aligned_cols=160 Identities=14% Similarity=0.131 Sum_probs=117.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc----cccceeEEeecCccc-----------ccCCCCc---------cCCcchh
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE----TVRRTMHIVNLDPAA-----------ENFDYPV---------AMDIREL 56 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~----~~~G~I~i~g~~~~~-----------~~~~~~~---------~~~~~~~ 56 (175)
+||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. +.+++.+ .+++.++
T Consensus 32 ~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~ 111 (326)
T PRK11022 32 QGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQ 111 (326)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHH
Confidence 599999999999999999999999997 489999999986421 1222222 1222211
Q ss_pred cc-----------------HHHHHHHhCCCCCC-chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccc
Q 030566 57 IS-----------------LEDVMEELGLGPNG-GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHV 116 (175)
Q Consensus 57 ~~-----------------~~~~~~~~~l~~~~-~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~ 116 (175)
+. ..++++.+++.... .......++ .|+||..++++++. +|+++|+|||+...+...+
T Consensus 112 i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~--~P~llilDEPts~LD~~~~ 189 (326)
T PRK11022 112 IMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIAC--RPKLLIADEPTTALDVTIQ 189 (326)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHH
Confidence 10 13445566664311 011112233 48999999999999 9999999999666666666
Q ss_pred hHHHHHHHHHHh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 117 PVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 117 ~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
..+.++|+++++ .|.|+ +++||+++.+.+++|++++|..|..+-++
T Consensus 190 ~~il~lL~~l~~~~g~ti----l~iTHdl~~~~~~adri~vm~~G~ive~g 236 (326)
T PRK11022 190 AQIIELLLELQQKENMAL----VLITHDLALVAEAAHKIIVMYAGQVVETG 236 (326)
T ss_pred HHHHHHHHHHHHhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 777889999875 58999 99999999999999999999988876543
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-28 Score=190.10 Aligned_cols=157 Identities=14% Similarity=0.032 Sum_probs=121.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc--ccccCCCCccCCcchhccH----------------HHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELISL----------------EDV 62 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~--~~~~~~~~~~~~~~~~~~~----------------~~~ 62 (175)
+||.+||+|+||||||||+|+|+|.++|++|+|.+.|.-. -.-..++.+.++.++++.. .++
T Consensus 52 ~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eI 131 (249)
T COG1134 52 KGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEI 131 (249)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 5999999999999999999999999999999999998743 3346678888888877752 233
Q ss_pred HHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeecc
Q 030566 63 MEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (175)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH 142 (175)
.+--+++.....+....+-.++.|.+++-+... +|++||+||-...-+.+.++...+.+.++.+++.|+ +++||
T Consensus 132 ieFaELG~fi~~PvktYSSGM~aRLaFsia~~~--~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~ti----v~VSH 205 (249)
T COG1134 132 IEFAELGDFIDQPVKTYSSGMYARLAFSVATHV--EPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTI----VLVSH 205 (249)
T ss_pred HHHHHHHHHhhCchhhccHHHHHHHHHhhhhhc--CCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEE----EEEEC
Confidence 333334443333333334447777777777777 999999999944444666677777888887778999 99999
Q ss_pred chhhhhcCCCceeEeccchhh
Q 030566 143 VCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~ 163 (175)
++..+.++||+++.++.|..+
T Consensus 206 d~~~I~~~Cd~~i~l~~G~i~ 226 (249)
T COG1134 206 DLGAIKQYCDRAIWLEHGQIR 226 (249)
T ss_pred CHHHHHHhcCeeEEEeCCEEE
Confidence 999999999999999988543
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-28 Score=197.85 Aligned_cols=159 Identities=14% Similarity=0.099 Sum_probs=116.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcccc---ceeEEeecCccc-------ccCCCCc--------cCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVR---RTMHIVNLDPAA-------ENFDYPV--------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~---G~I~i~g~~~~~-------~~~~~~~--------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+++|+|+++|++ |+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 32 ~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~ 111 (282)
T PRK13640 32 RGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLE 111 (282)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHH
Confidence 599999999999999999999999999987 899999976532 1223322 123333221
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..++++..++++++. +|++++||||....+......+.++++++
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~--~P~llllDEPt~gLD~~~~~~l~~~l~~l 189 (282)
T PRK13640 112 NRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAV--EPKIIILDESTSMLDPAGKEQILKLIRKL 189 (282)
T ss_pred hCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 1223444444322211111223348899999999999 99999999997776677777888899998
Q ss_pred HhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 127 KSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 127 ~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++ |.|| +++||+++++. .||+++++..|..+.++
T Consensus 190 ~~~~g~tv----li~tH~~~~~~-~~d~i~~l~~G~i~~~g 225 (282)
T PRK13640 190 KKKNNLTV----ISITHDIDEAN-MADQVLVLDDGKLLAQG 225 (282)
T ss_pred HHhcCCEE----EEEecCHHHHH-hCCEEEEEECCEEEEeC
Confidence 754 8999 99999999985 79999999887766543
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-28 Score=193.67 Aligned_cols=162 Identities=17% Similarity=0.146 Sum_probs=114.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc-------cCCcchhcc--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV-------AMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~-------~~~~~~~~~-------- 58 (175)
+||+++|+||||||||||+++|+|+.++ +|+|.++|.++.. ..++|.+ ..+..+++.
T Consensus 21 ~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~ 99 (248)
T PRK03695 21 AGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTR 99 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccCCC
Confidence 5999999999999999999999999865 9999999976421 1122322 112222111
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhc----c-CCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDN----Y-LDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~----~-~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..++++..++++++. . -+|++++||||....+......+.++++++
T Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~ 179 (248)
T PRK03695 100 TEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSEL 179 (248)
T ss_pred cHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 1234444444322111111123348899999998874 0 046999999996666666777888899998
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++|.|| +++||+++++.++||++++++.+..+.+++
T Consensus 180 ~~~~~tv----i~~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 216 (248)
T PRK03695 180 CQQGIAV----VMSSHDLNHTLRHADRVWLLKQGKLLASGR 216 (248)
T ss_pred HhCCCEE----EEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 7778999 999999999999999999999887665433
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-28 Score=197.49 Aligned_cols=160 Identities=13% Similarity=0.052 Sum_probs=115.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc--------cCCcchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV--------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~--------~~~~~~~~~------- 58 (175)
+||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~ 111 (277)
T PRK13642 32 KGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQG 111 (277)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcC
Confidence 599999999999999999999999999999999999876431 1223322 112222211
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC
Q 030566 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
...+++.+++..........-+..++++..++++++. +|+++|||||....+......+.+++++++++
T Consensus 112 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~--~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~ 189 (277)
T PRK13642 112 IPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIAL--RPEIIILDESTSMLDPTGRQEIMRVIHEIKEK 189 (277)
T ss_pred CCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 0122233333221111111123347899999999999 99999999997766677777888899998765
Q ss_pred -CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 130 -NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 130 -g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|.|| +++||+++++. .||+++++..+..+.+++
T Consensus 190 ~g~ti----il~sH~~~~~~-~~d~i~~l~~G~i~~~g~ 223 (277)
T PRK13642 190 YQLTV----LSITHDLDEAA-SSDRILVMKAGEIIKEAA 223 (277)
T ss_pred cCCEE----EEEeCCHHHHH-hCCEEEEEECCEEEEeCC
Confidence 8999 99999999997 599999999888765443
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-28 Score=209.53 Aligned_cols=158 Identities=14% Similarity=0.092 Sum_probs=118.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCc----------cCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV----------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~----------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..++|.+ ..++.+++.
T Consensus 278 ~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~ 357 (501)
T PRK11288 278 AGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISAR 357 (501)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccc
Confidence 599999999999999999999999999999999998865321 1122221 122222211
Q ss_pred ------------------HHHHHHHhCCC-CCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 59 ------------------LEDVMEELGLG-PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 ------------------~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..++++.+++. .........-+..|+||..+++++.. +|+++|||||+...+...+..+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l 435 (501)
T PRK11288 358 RHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSE--DMKVILLDEPTRGIDVGAKHEI 435 (501)
T ss_pred hhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHcc--CCCEEEEcCCCCCCCHhHHHHH
Confidence 12344555553 22112222223348999999999999 9999999999777777778888
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
.+++++++++|.|| +++||+++++.++|++++++..+..+.
T Consensus 436 ~~~l~~l~~~g~tv----iivsHd~~~~~~~~d~i~~l~~g~i~~ 476 (501)
T PRK11288 436 YNVIYELAAQGVAV----LFVSSDLPEVLGVADRIVVMREGRIAG 476 (501)
T ss_pred HHHHHHHHhCCCEE----EEECCCHHHHHhhCCEEEEEECCEEEE
Confidence 88999998889999 999999999999999999998887553
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-28 Score=195.34 Aligned_cols=158 Identities=19% Similarity=0.079 Sum_probs=113.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccc--------cceeEEeecCccc-------ccCCCCc-------cCCcchhcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV--------RRTMHIVNLDPAA-------ENFDYPV-------AMDIRELIS 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~--------~G~I~i~g~~~~~-------~~~~~~~-------~~~~~~~~~ 58 (175)
+||+++|+||||||||||+|+|+|+++|+ +|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~ 105 (272)
T PRK13547 26 PGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVL 105 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHh
Confidence 59999999999999999999999999998 9999999876421 1122222 122222211
Q ss_pred --------------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhh---------ccCCCCEEEEeCCCc
Q 030566 59 --------------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELD---------NYLDDDYLVFDCPGQ 109 (175)
Q Consensus 59 --------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~---------~~~~p~lliLDEP~~ 109 (175)
...+++.+++..........-+..++++..++++++ . +|++++||||..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~--~p~lllLDEPt~ 183 (272)
T PRK13547 106 LGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQ--PPRYLLLDEPTA 183 (272)
T ss_pred hcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCC--CCCEEEEcCccc
Confidence 112233333322111111112234789999999998 6 899999999977
Q ss_pred ccccccchHHHHHHHHHHhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 110 IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 110 ~~~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
..+....+.+.+++++++++ |.|| +++||+++++.++||+++++..+..+.
T Consensus 184 ~LD~~~~~~l~~~l~~~~~~~~~tv----iiisH~~~~~~~~~d~i~~l~~G~i~~ 235 (272)
T PRK13547 184 ALDLAHQHRLLDTVRRLARDWNLGV----LAIVHDPNLAARHADRIAMLADGAIVA 235 (272)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEE----EEEECCHHHHHHhCCEEEEEECCeEEE
Confidence 76677778888899998765 8999 999999999999999999998876553
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-28 Score=195.43 Aligned_cols=160 Identities=13% Similarity=0.071 Sum_probs=116.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCCCc---------cCCcchhcc---
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV---------AMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~---------~~~~~~~~~--- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+++.+ ..+..+++.
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~ 116 (268)
T PRK10419 37 SGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPL 116 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHH
Confidence 599999999999999999999999999999999999876421 1122221 122222210
Q ss_pred --------------HHHHHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 59 --------------LEDVMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 59 --------------~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
..++++.+++... .......-+..++++..+++++.. +|++++||||....+....+.+.+++
T Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~~~~~l 194 (268)
T PRK10419 117 RHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAV--EPKLLILDEAVSNLDLVLQAGVIRLL 194 (268)
T ss_pred HhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHHHHH
Confidence 1234444555321 111111123348999999999999 99999999996665566666788899
Q ss_pred HHHHhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 124 DHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 124 ~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++++++ +.|+ +++||+.+++.++||+++++..+..+..+
T Consensus 195 ~~~~~~~~~ti----iivsH~~~~i~~~~d~i~~l~~G~i~~~g 234 (268)
T PRK10419 195 KKLQQQFGTAC----LFITHDLRLVERFCQRVMVMDNGQIVETQ 234 (268)
T ss_pred HHHHHHcCcEE----EEEECCHHHHHHhCCEEEEEECCEEeeeC
Confidence 988654 8899 99999999999999999999988766543
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-28 Score=210.24 Aligned_cols=158 Identities=14% Similarity=0.150 Sum_probs=119.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCc----------cCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV----------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~----------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..++|.+ .+++.+++.
T Consensus 277 ~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~ 356 (501)
T PRK10762 277 KGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTAL 356 (501)
T ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhh
Confidence 599999999999999999999999999999999999865421 1233322 122222111
Q ss_pred ------------------HHHHHHHhCCC-CCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 59 ------------------LEDVMEELGLG-PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 ------------------~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..++++.+++. .........-+..|+||..+++++.. +|++++||||+...+....+.+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l 434 (501)
T PRK10762 357 RYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMT--RPKVLILDEPTRGVDVGAKKEI 434 (501)
T ss_pred hhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCCCHhHHHHH
Confidence 12344555653 22222222223348999999999999 9999999999777777778888
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
.+++++++++|.|| +++||+++++.++||++++++.|..+.
T Consensus 435 ~~~l~~~~~~g~tv----iivtHd~~~~~~~~d~v~~l~~G~i~~ 475 (501)
T PRK10762 435 YQLINQFKAEGLSI----ILVSSEMPEVLGMSDRILVMHEGRISG 475 (501)
T ss_pred HHHHHHHHHCCCEE----EEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 88999998789999 999999999999999999999887653
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-28 Score=188.73 Aligned_cols=159 Identities=8% Similarity=-0.139 Sum_probs=107.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeE-EeecCcc-cccCCCCccCCcchhccHH---------H----HHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-IVNLDPA-AENFDYPVAMDIRELISLE---------D----VMEE 65 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~-i~g~~~~-~~~~~~~~~~~~~~~~~~~---------~----~~~~ 65 (175)
+|++++|+||||||||||+|+|+|+.+|++|+|. ++|.... .....+.+.+++.+++... + +.+.
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~ 91 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFCYQL 91 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4999999999999999999999999999999997 6665321 1122233334544444310 0 1111
Q ss_pred hCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchh
Q 030566 66 LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCI 145 (175)
Q Consensus 66 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~ 145 (175)
.++...........+..+++|..++++++. +|++++||||....+......+.+.+.+..+ +.|+ +++||+++
T Consensus 92 ~~l~~~~~~~~~~lS~G~~qrv~la~al~~--~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~~~i----i~vsH~~~ 164 (213)
T PRK15177 92 TQLEQCYTDRVSEYSVTMKTHLAFAINLLL--PCRLYIADGKLYTGDNATQLRMQAALACQLQ-QKGL----IVLTHNPR 164 (213)
T ss_pred hChhHHhhchHhhcCHHHHHHHHHHHHHhc--CCCEEEECCCCccCCHHHHHHHHHHHHHHhh-CCcE----EEEECCHH
Confidence 222221111111223348899999999999 9999999999333344444555555544322 4678 89999999
Q ss_pred hhhcCCCceeEeccchhhHHh
Q 030566 146 RFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++.++||+++++..|..+...
T Consensus 165 ~~~~~~d~i~~l~~G~i~~~~ 185 (213)
T PRK15177 165 LIKEHCHAFGVLLHGKITMCE 185 (213)
T ss_pred HHHHhcCeeEEEECCeEEEeC
Confidence 999999999999988766443
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-28 Score=192.43 Aligned_cols=158 Identities=17% Similarity=0.123 Sum_probs=114.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-----ccceeEEeecCccc-------ccCCC-------CccCCcchhcc---
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~-------~~~~~-------~~~~~~~~~~~--- 58 (175)
+||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. ..+++ .+..++.+++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~ 107 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGL 107 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHH
Confidence 5999999999999999999999999974 79999999876421 12222 22223333321
Q ss_pred ---------------HHHHHHHhCCCCCC--chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 59 ---------------LEDVMEELGLGPNG--GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~~~--~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..+.++.+++.... .......++ +++||..+++++.. +|++++||||....+....+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~lllLDEP~~~LD~~~~~~l 185 (250)
T PRK14247 108 KLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAF--QPEVLLADEPTANLDPENTAKI 185 (250)
T ss_pred HhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHH
Confidence 11233334442110 011112233 48899999999999 9999999999766667777788
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
.++++++++ +.|+ +++||+++++.++||+++++..|..+.+
T Consensus 186 ~~~l~~~~~-~~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14247 186 ESLFLELKK-DMTI----VLVTHFPQQAARISDYVAFLYKGQIVEW 226 (250)
T ss_pred HHHHHHHhc-CCEE----EEEeCCHHHHHHhcCEEEEEECCeEEEE
Confidence 889998854 7899 9999999999999999999988876543
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-28 Score=201.09 Aligned_cols=161 Identities=17% Similarity=0.195 Sum_probs=117.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc----cccceeEEeecCccc-----------ccCCCCc---------cCCcchh
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE----TVRRTMHIVNLDPAA-----------ENFDYPV---------AMDIREL 56 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~----~~~G~I~i~g~~~~~-----------~~~~~~~---------~~~~~~~ 56 (175)
+||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++.. ..+++.+ .+++.++
T Consensus 32 ~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~ 111 (330)
T PRK15093 32 EGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQ 111 (330)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHH
Confidence 599999999999999999999999986 589999999976421 1233222 1121111
Q ss_pred c----------------------cHHHHHHHhCCCCCCc-hhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCccc
Q 030566 57 I----------------------SLEDVMEELGLGPNGG-LIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIE 111 (175)
Q Consensus 57 ~----------------------~~~~~~~~~~l~~~~~-~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~ 111 (175)
+ ...++++.+++..... ......++ .|+||..++++++. +|+++|+|||+...
T Consensus 112 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~--~P~llilDEPts~L 189 (330)
T PRK15093 112 LMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALAN--QPRLLIADEPTNAM 189 (330)
T ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHC--CCCEEEEeCCCCcC
Confidence 1 0123445555543110 11111233 48999999999999 99999999996665
Q ss_pred ccccchHHHHHHHHHHhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 112 LFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 112 ~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+...+..+.++|++++++ |.|+ +++||+++++.++||++++|..|..+-+++
T Consensus 190 D~~~~~~i~~lL~~l~~~~g~ti----i~itHdl~~v~~~~dri~vm~~G~ive~g~ 242 (330)
T PRK15093 190 EPTTQAQIFRLLTRLNQNNNTTI----LLISHDLQMLSQWADKINVLYCGQTVETAP 242 (330)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEE----EEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 566677888899998764 8999 999999999999999999999988765543
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-28 Score=188.45 Aligned_cols=152 Identities=16% Similarity=0.131 Sum_probs=109.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEe--ec--Ccc-----------cccCCCCc-------cCCcchhcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV--NL--DPA-----------AENFDYPV-------AMDIRELIS 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~--g~--~~~-----------~~~~~~~~-------~~~~~~~~~ 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++ |. ++. ...+++.+ ..++.+++.
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 112 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVA 112 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHH
Confidence 599999999999999999999999999999999998 32 321 11223322 112222211
Q ss_pred ----------------HHHHHHHhCCCCCC-chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHH
Q 030566 59 ----------------LEDVMEELGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN 121 (175)
Q Consensus 59 ----------------~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~ 121 (175)
..++++.+++.... ......-+..++|+..+++++.. +|++++||||....+......+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~l~~ 190 (224)
T TIGR02324 113 EPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIA--DYPILLLDEPTASLDAANRQVVVE 190 (224)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHH
Confidence 12344445553211 11111123348899999999999 999999999976666777778888
Q ss_pred HHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEec
Q 030566 122 FVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFC 158 (175)
Q Consensus 122 ~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~ 158 (175)
.+++++++|.|| +++||+.+.+.++||+++.+.
T Consensus 191 ~l~~~~~~g~ti----i~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 191 LIAEAKARGAAL----IGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHhcCCEE----EEEeCCHHHHHHhcceeEecC
Confidence 999987778999 999999999999999887653
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-28 Score=193.49 Aligned_cols=162 Identities=13% Similarity=0.114 Sum_probs=114.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC--ccccceeEEeecCccc--------ccCCCCccC-------Ccchh-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA--------ENFDYPVAM-------DIREL------- 56 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~--~~~~G~I~i~g~~~~~--------~~~~~~~~~-------~~~~~------- 56 (175)
+|++++|+||||||||||+++|+|+. +|++|+|.++|.++.. ..+++.+.. +...+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~ 105 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNA 105 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhh
Confidence 59999999999999999999999995 6999999999976421 112222110 00000
Q ss_pred ---------cc-------HHHHHHHhCCCCC-Cchhhh-HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchH
Q 030566 57 ---------IS-------LEDVMEELGLGPN-GGLIYC-MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 57 ---------~~-------~~~~~~~~~l~~~-~~~~~~-~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
+. ..+.++.+++... ...... .-+..++++..+++++.. +|++++||||....+....+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~illLDEPt~~LD~~~~~~ 183 (248)
T PRK09580 106 VRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL--EPELCILDESDSGLDIDALKI 183 (248)
T ss_pred hhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHH
Confidence 00 0122233333211 001010 123348999999999999 999999999966666777778
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeccchhhhhcC-CCceeEeccchhhHHhhh
Q 030566 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTL-PPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~-~~~~~~~~~~~~~~~~~~ 168 (175)
+.++++++++++.|| +++||+++.+... +++++++..+..+..+++
T Consensus 184 l~~~l~~l~~~~~ti----ii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~ 230 (248)
T PRK09580 184 VADGVNSLRDGKRSF----IIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230 (248)
T ss_pred HHHHHHHHHhCCCEE----EEEeCCHHHHHhhhCCEEEEEECCeEEEeCCH
Confidence 888898987778999 9999999999887 899999988877655544
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-28 Score=194.25 Aligned_cols=158 Identities=17% Similarity=0.213 Sum_probs=114.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-----ccceeEEeecCccc---------ccCCCCcc------CCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.. +.++|.+. .++.+++..
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 116 (258)
T PRK14268 37 KNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYG 116 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCcccHHHHHHHH
Confidence 5999999999999999999999999975 79999999876421 12233221 222222211
Q ss_pred ---------------HHHHHHhCCCCC--CchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHH
Q 030566 60 ---------------EDVMEELGLGPN--GGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120 (175)
Q Consensus 60 ---------------~~~~~~~~l~~~--~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~ 120 (175)
..+++.+++... .........+ .++||..++++++. +|++++||||....+....+.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~ 194 (258)
T PRK14268 117 PRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAV--KPKIILFDEPTSALDPISTARIE 194 (258)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcccCHHHHHHHH
Confidence 123333333210 0011112233 48899999999999 99999999997776677777888
Q ss_pred HHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 121 NFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 121 ~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
++++++++ +.|| +++||+++++.++||+++++..|..+..
T Consensus 195 ~~l~~l~~-~~ti----iivsH~~~~~~~~~d~i~~l~~G~i~~~ 234 (258)
T PRK14268 195 DLIMNLKK-DYTI----VIVTHNMQQAARISDYTGFFLMGELIEF 234 (258)
T ss_pred HHHHHHhh-CCEE----EEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 89998864 7899 9999999999999999999998876544
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-28 Score=194.04 Aligned_cols=159 Identities=14% Similarity=0.142 Sum_probs=113.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc-----cccceeEEeecCccc---------ccCCCCcc------CCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++.. ..++|.+. .++.+++..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 110 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYG 110 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHH
Confidence 599999999999999999999999964 589999999976421 12333221 122222211
Q ss_pred ----------------HHHHHHhCCCCC----CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 60 ----------------EDVMEELGLGPN----GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.+.++.+++... .......-+..++||..+++++.. +|++++||||....+....+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l 188 (253)
T PRK14242 111 LRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAV--EPEVLLMDEPASALDPIATQKI 188 (253)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 112222333210 000011122348899999999999 9999999999666667777788
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.++++++++ +.|| +++||+++++.++||++++++.|..+.++
T Consensus 189 ~~~l~~~~~-~~tv----ii~tH~~~~~~~~~d~v~~l~~G~i~~~g 230 (253)
T PRK14242 189 EELIHELKA-RYTI----IIVTHNMQQAARVSDVTAFFYMGKLIEVG 230 (253)
T ss_pred HHHHHHHhc-CCeE----EEEEecHHHHHHhCCEEEEEECCEEEEeC
Confidence 889999854 7899 99999999999999999999988765543
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-28 Score=192.50 Aligned_cols=157 Identities=15% Similarity=0.159 Sum_probs=113.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-----ccceeEEeecCcc--c-------ccCCCCc-------cCCcchhccH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA--A-------ENFDYPV-------AMDIRELISL 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~--~-------~~~~~~~-------~~~~~~~~~~ 59 (175)
+||+++|+||||||||||+++|+|+++| ++|+|.++|.++. . ..+++.+ ..++.+++..
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 108 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAI 108 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHH
Confidence 5999999999999999999999999987 4999999987642 1 1223222 1222222211
Q ss_pred ------------------HHHHHHhCCCCC--CchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccch
Q 030566 60 ------------------EDVMEELGLGPN--GGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVP 117 (175)
Q Consensus 60 ------------------~~~~~~~~l~~~--~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~ 117 (175)
.++++.+++... .........+ .++||..+++++.. +|++++||||....+.....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~ 186 (253)
T PRK14267 109 GVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAM--KPKILLMDEPTANIDPVGTA 186 (253)
T ss_pred HHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHH
Confidence 122333333211 0011112233 48899999999999 99999999996666677777
Q ss_pred HHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 118 VLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 118 ~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
.+.++|+++++ +.|| +++||+++++..+||++++++.|..+.
T Consensus 187 ~l~~~l~~~~~-~~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~~ 228 (253)
T PRK14267 187 KIEELLFELKK-EYTI----VLVTHSPAQAARVSDYVAFLYLGKLIE 228 (253)
T ss_pred HHHHHHHHHhh-CCEE----EEEECCHHHHHhhCCEEEEEECCEEEE
Confidence 88889998865 6899 999999999999999999998876553
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-28 Score=201.56 Aligned_cols=161 Identities=13% Similarity=0.063 Sum_probs=117.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccc---cceeEEeecCccc-----------ccCCCCc---------cCCcchhc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA-----------ENFDYPV---------AMDIRELI 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~---~G~I~i~g~~~~~-----------~~~~~~~---------~~~~~~~~ 57 (175)
+||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. ..+++.+ .++..+++
T Consensus 41 ~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i 120 (330)
T PRK09473 41 AGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQL 120 (330)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHH
Confidence 59999999999999999999999999986 9999999986421 1222222 22222211
Q ss_pred c-----------------HHHHHHHhCCCCCCch-hhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccch
Q 030566 58 S-----------------LEDVMEELGLGPNGGL-IYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVP 117 (175)
Q Consensus 58 ~-----------------~~~~~~~~~l~~~~~~-~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~ 117 (175)
. ..++++.+++...... ..... +..++||..++++++. +|+++|+|||+...+...+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~--~P~llilDEPts~LD~~~~~ 198 (330)
T PRK09473 121 MEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLC--RPKLLIADEPTTALDVTVQA 198 (330)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHH
Confidence 1 1234455555321100 11112 3348999999999999 99999999996665566667
Q ss_pred HHHHHHHHHHhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 118 VLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 118 ~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.+.++|++++++ |.|+ +++||++..+.+++|++++|..|..+-.++
T Consensus 199 ~i~~lL~~l~~~~g~ti----l~iTHdl~~~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 199 QIMTLLNELKREFNTAI----IMITHDLGVVAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred HHHHHHHHHHHHcCCEE----EEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 777889998664 8999 999999999999999999999988776544
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-28 Score=200.76 Aligned_cols=153 Identities=12% Similarity=0.051 Sum_probs=112.8
Q ss_pred EECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----ccCCC-------CccCCcchhcc----------------
Q 030566 7 VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS---------------- 58 (175)
Q Consensus 7 liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~-------~~~~~~~~~~~---------------- 58 (175)
|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.+++ .+.+++.+++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 689999999999999999999999999999876421 12222 22334443332
Q ss_pred HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CCcEEEEE
Q 030566 59 LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAVY 137 (175)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~tvli~~ 137 (175)
..++++.+++..........-+..++||..++++++. +|++++||||....+...+..+.+.+++++++ |.|+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~--~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~ti---- 154 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVF--KPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITF---- 154 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEE----
Confidence 1234444555432222222223348999999999999 99999999996666666777888889888654 8999
Q ss_pred eeeccchhhhhcCCCceeEeccchhhHH
Q 030566 138 LLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 138 l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+++||+++++..+||++++|..|..+..
T Consensus 155 iivTHd~~e~~~~~d~i~vl~~G~i~~~ 182 (325)
T TIGR01187 155 VFVTHDQEEAMTMSDRIAIMRKGKIAQI 182 (325)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999998876543
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-28 Score=209.24 Aligned_cols=159 Identities=12% Similarity=0.093 Sum_probs=118.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc-cccceeEEeecCccc--------ccCCCCc----------cCCcchhcc---
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAA--------ENFDYPV----------AMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-~~~G~I~i~g~~~~~--------~~~~~~~----------~~~~~~~~~--- 58 (175)
+||+++|+||||||||||+|+|+|+++ |++|+|.++|.++.. ..++|.+ .+++.+++.
T Consensus 287 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~ 366 (506)
T PRK13549 287 RGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAA 366 (506)
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhh
Confidence 599999999999999999999999998 599999999865321 1122222 122222111
Q ss_pred ------------------HHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 59 ------------------LEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 ------------------~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..++++.+++.. ........-+..++||..+++++.. +|++++||||+...+......+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l 444 (506)
T PRK13549 367 LDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLL--NPKILILDEPTRGIDVGAKYEI 444 (506)
T ss_pred hhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCcCHhHHHHH
Confidence 123445555531 2112222223348999999999999 9999999999777777778888
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
.+++++++++|.|| +++||+++++.++||+++++..|..+..
T Consensus 445 ~~~l~~l~~~g~tv----i~~sHd~~~~~~~~d~v~~l~~G~i~~~ 486 (506)
T PRK13549 445 YKLINQLVQQGVAI----IVISSELPEVLGLSDRVLVMHEGKLKGD 486 (506)
T ss_pred HHHHHHHHHCCCEE----EEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 88999998789999 9999999999999999999998876543
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-28 Score=208.27 Aligned_cols=157 Identities=12% Similarity=0.091 Sum_probs=117.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-ccceeEEeecCccc--------ccCCCCc----------cCCcchhcc---
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAA--------ENFDYPV----------AMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-~~G~I~i~g~~~~~--------~~~~~~~----------~~~~~~~~~--- 58 (175)
+||+++|+||||||||||+|+|+|+.+| ++|+|.++|+++.. ..+++.+ .+++.+++.
T Consensus 285 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~ 364 (500)
T TIGR02633 285 RGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSV 364 (500)
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchh
Confidence 5999999999999999999999999985 89999999865421 1122221 112111110
Q ss_pred ------------------HHHHHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 59 ------------------LEDVMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 ------------------~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..++++.+++... .......-+..|+||..+++++.. +|++++||||+...+...+..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l 442 (500)
T TIGR02633 365 LKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLT--NPRVLILDEPTRGVDVGAKYEI 442 (500)
T ss_pred hhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCcCHhHHHHH
Confidence 1234555666421 112222223449999999999999 9999999999777777778888
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
.+++++++++|.|| +++||+++++.++||+++++..+..+
T Consensus 443 ~~~l~~l~~~g~tv----iivsHd~~~~~~~~d~v~~l~~G~i~ 482 (500)
T TIGR02633 443 YKLINQLAQEGVAI----IVVSSELAEVLGLSDRVLVIGEGKLK 482 (500)
T ss_pred HHHHHHHHhCCCEE----EEECCCHHHHHHhCCEEEEEECCEEE
Confidence 88999998889999 99999999999999999999877654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-28 Score=184.50 Aligned_cols=146 Identities=11% Similarity=0.036 Sum_probs=106.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------ccCCCC-------ccCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYP-------VAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~-------~~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|+++|.++.. +.+++. +..++.+++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~ 105 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGA 105 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcch
Confidence 599999999999999999999999999999999999976431 122222 2234443332
Q ss_pred --HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEE
Q 030566 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (175)
Q Consensus 59 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~ 136 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.+++++++++|.|+
T Consensus 106 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~--~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~ti--- 180 (200)
T PRK13540 106 VGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMS--KAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV--- 180 (200)
T ss_pred HHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEE---
Confidence 2334444554322111111123348899999999999 999999999977766777788888999987778999
Q ss_pred EeeeccchhhhhcCCCc
Q 030566 137 YLLDSQVCIRFRTLPPC 153 (175)
Q Consensus 137 ~l~~sH~~~~~~~~~~~ 153 (175)
+++||+.+.+.+ +|.
T Consensus 181 -ii~sh~~~~~~~-~d~ 195 (200)
T PRK13540 181 -LLTSHQDLPLNK-ADY 195 (200)
T ss_pred -EEEeCCchhccc-cch
Confidence 999999877744 663
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-28 Score=184.13 Aligned_cols=147 Identities=13% Similarity=0.026 Sum_probs=104.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc---ccC-------CCCccCCcchhcc-----------H
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENF-------DYPVAMDIRELIS-----------L 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---~~~-------~~~~~~~~~~~~~-----------~ 59 (175)
+||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.. ... .+.+..++.+++. .
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~ 104 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETL 104 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcccHHHH
Confidence 599999999999999999999999999999999999976432 111 1222234444332 1
Q ss_pred HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEee
Q 030566 60 EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLL 139 (175)
Q Consensus 60 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~ 139 (175)
..+++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.+++++..+++.|+ ++
T Consensus 105 ~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~--~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~ti----ii 178 (195)
T PRK13541 105 YAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIAC--QSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIV----LL 178 (195)
T ss_pred HHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEE----EE
Confidence 223344444322211111223348899999999999 999999999966666666777888887766678999 99
Q ss_pred eccchhhhhcCCCce
Q 030566 140 DSQVCIRFRTLPPCI 154 (175)
Q Consensus 140 ~sH~~~~~~~~~~~~ 154 (175)
+||+.+++.+ ++.+
T Consensus 179 ~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 179 SSHLESSIKS-AQIL 192 (195)
T ss_pred EeCCccccch-hhee
Confidence 9999988765 5543
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-28 Score=191.04 Aligned_cols=156 Identities=13% Similarity=0.091 Sum_probs=111.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCCCC--
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPN-- 71 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 71 (175)
+|++++|+||||||||||+++|+|+.+|++|+|.++|.++.. +.++|.+ +....+. .++.+++.+...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~--q~~~~~~-~tv~~nl~~~~~~~ 102 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVP--QDTVLFN-DTIGYNIRYGRPDA 102 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEEC--CCChhhc-chHHHHHhhcCCCC
Confidence 599999999999999999999999999999999999876421 1223322 1111111 133333222110
Q ss_pred ----------------------------CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 72 ----------------------------GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 72 ----------------------------~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
.......-+..++++..++++++. +|++++||||....+....+.+.+++
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~--~p~llllDEP~~~LD~~~~~~l~~~l 180 (236)
T cd03253 103 TDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK--NPPILLLDEATSALDTHTEREIQAAL 180 (236)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 000001112348899999999999 99999999996666666677788888
Q ss_pred HHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++++ |.|| +++||+.+++.. |++++++..+..+.+++
T Consensus 181 ~~~~~-~~ti----ii~sh~~~~~~~-~d~~~~l~~g~i~~~~~ 218 (236)
T cd03253 181 RDVSK-GRTT----IVIAHRLSTIVN-ADKIIVLKDGRIVERGT 218 (236)
T ss_pred HHhcC-CCEE----EEEcCCHHHHHh-CCEEEEEECCEEEeeCC
Confidence 88866 8899 999999999976 99999999887665433
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-28 Score=191.06 Aligned_cols=155 Identities=17% Similarity=0.122 Sum_probs=113.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeE-----------EeecCcccc---------cCCCCccC---Cc---c
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAAE---------NFDYPVAM---DI---R 54 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~-----------i~g~~~~~~---------~~~~~~~~---~~---~ 54 (175)
+||+++|+||||||||||+|+|+|+++|++|+|. ++|.+.... .+.+.+.. .. .
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 104 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVK 104 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCchHHH
Confidence 5999999999999999999999999999999996 667654210 11111110 00 0
Q ss_pred h----hc-------cHHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 55 E----LI-------SLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 55 ~----~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
+ ++ ...++++.+++..........-+..++++..++++++. +|++++||||+...+......+.+++
T Consensus 105 ~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~--~p~illlDEPts~LD~~~~~~l~~~l 182 (255)
T cd03236 105 GKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALAR--DADFYFFDEPSSYLDIKQRLNAARLI 182 (255)
T ss_pred HHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 0 00 12345556665432222222223348899999999999 99999999996666666667778899
Q ss_pred HHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccch
Q 030566 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
+++++++.|| +++||+++++.++||+++++.+..
T Consensus 183 ~~l~~~~~tI----IiiSHd~~~~~~~ad~i~~l~~~~ 216 (255)
T cd03236 183 RELAEDDNYV----LVVEHDLAVLDYLSDYIHCLYGEP 216 (255)
T ss_pred HHHHhcCCEE----EEEECCHHHHHHhCCEEEEECCCC
Confidence 9987778999 999999999999999999998754
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-28 Score=191.38 Aligned_cols=162 Identities=10% Similarity=0.117 Sum_probs=116.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcc--CccccceeEEeecCccc------c--cCCCCc-------cCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA------E--NFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl--~~~~~G~I~i~g~~~~~------~--~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++.. . .+.+.+ ..+..+++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~ 111 (252)
T CHL00131 32 KGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNS 111 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhh
Confidence 5999999999999999999999998 57999999999876421 0 111111 111111110
Q ss_pred ------------------HHHHHHHhCCCC-CCchhhh-HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchH
Q 030566 59 ------------------LEDVMEELGLGP-NGGLIYC-MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 59 ------------------~~~~~~~~~l~~-~~~~~~~-~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
..++++.+++.. ....... .-+.++++|..+++++.. +|++++||||....+....+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~ 189 (252)
T CHL00131 112 KRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALL--DSELAILDETDSGLDIDALKI 189 (252)
T ss_pred hhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHH
Confidence 122344444431 1111111 123448999999999999 999999999966666777778
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeccchhhhhcC-CCceeEeccchhhHHhhh
Q 030566 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTL-PPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~-~~~~~~~~~~~~~~~~~~ 168 (175)
+.+++++++++|.|| +++||+++++... +|+++++..|..+..++.
T Consensus 190 l~~~l~~~~~~g~ti----i~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~ 236 (252)
T CHL00131 190 IAEGINKLMTSENSI----ILITHYQRLLDYIKPDYVHVMQNGKIIKTGDA 236 (252)
T ss_pred HHHHHHHHHhCCCEE----EEEecCHHHHHhhhCCEEEEEeCCEEEEecCh
Confidence 888999987778999 9999999999887 899999998887665544
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-28 Score=188.32 Aligned_cols=153 Identities=14% Similarity=0.090 Sum_probs=107.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCcc------CCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA------MDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~------~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+++.+. .++.+++.
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~ 118 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFE 118 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHH
Confidence 599999999999999999999999999999999999976421 12233221 11111111
Q ss_pred ----------HHHHHHHh--CCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ----------LEDVMEEL--GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ----------~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..+.++.+ ++..........-+..++++..+++++.. +|++++||||....+....+.+.++++++
T Consensus 119 ~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~ 196 (226)
T cd03248 119 CVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR--NPQVLILDEATSALDAESEQQVQQALYDW 196 (226)
T ss_pred HHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 01112222 12111111111112338899999999999 99999999996666666777888889888
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccch
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
++ +.|+ +++||+++++.. ||+++.+..+.
T Consensus 197 ~~-~~ti----i~~sh~~~~~~~-~d~i~~l~~g~ 225 (226)
T cd03248 197 PE-RRTV----LVIAHRLSTVER-ADQILVLDGGR 225 (226)
T ss_pred cC-CCEE----EEEECCHHHHHh-CCEEEEecCCc
Confidence 65 5888 999999999965 99999998763
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-28 Score=207.29 Aligned_cols=159 Identities=16% Similarity=0.092 Sum_probs=118.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc--ccceeEEeecCccc--------ccCCCCc-------cCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~--~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+.+| ++|+|.++|.++.. ..++|.+ .+++.+++.
T Consensus 26 ~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 105 (500)
T TIGR02633 26 PGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEI 105 (500)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccc
Confidence 5999999999999999999999999987 79999999865421 1222222 122221110
Q ss_pred ---------------HHHHHHHhCCCCCC-chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030566 59 ---------------LEDVMEELGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..++++.+++.... ......-+..|+||..+++++.. +|++++||||+...+......+.++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~--~p~lllLDEPt~~LD~~~~~~l~~~ 183 (500)
T TIGR02633 106 TLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK--QARLLILDEPSSSLTEKETEILLDI 183 (500)
T ss_pred cccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 12345555554321 11122223349999999999999 9999999999777777778888889
Q ss_pred HHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 123 VDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
|++++++|.|| +++||+++++.++||+++++..+..+..
T Consensus 184 l~~l~~~g~tv----iiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 184 IRDLKAHGVAC----VYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred HHHHHhCCCEE----EEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 99998789999 9999999999999999999998876543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-28 Score=192.59 Aligned_cols=160 Identities=16% Similarity=0.176 Sum_probs=113.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-----ccceeEEeecCccc---------ccCCCCc------cCCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDYPV------AMDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~---------~~~~~~~------~~~~~~~~~~- 59 (175)
+||+++|+|+||||||||+|+|+|+++| ++|+|.++|.++.. ..++|.+ ..++.+++..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~ 111 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYG 111 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHHHHHHHH
Confidence 5999999999999999999999999987 48999999875421 1223322 1222222211
Q ss_pred ----------------HHHHHHhCCCCC--CchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 60 ----------------EDVMEELGLGPN--GGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~--~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.+.++.+++... .........+ .++|+..+++++.. +|+++|||||....+......+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l 189 (254)
T PRK14273 112 PKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAI--EPNVILMDEPTSALDPISTGKI 189 (254)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcccCHHHHHHH
Confidence 111222222100 0001111223 38899999999999 9999999999777667777788
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.++++++++ +.|| +++||+++++.+++|+++++..+..+.++.
T Consensus 190 ~~~l~~~~~-~~tv----ii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 232 (254)
T PRK14273 190 EELIINLKE-SYTI----IIVTHNMQQAGRISDRTAFFLNGCIEEESS 232 (254)
T ss_pred HHHHHHHhc-CCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 889999864 7899 999999999999999999998888765443
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-28 Score=194.01 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=107.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc-----cccceeEEeecCccc---------ccCCCCcc------CCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. +.++|.+. .++.+++..
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~ 117 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFG 117 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchhhHHHHHhhh
Confidence 599999999999999999999999987 689999999876421 12333331 122221110
Q ss_pred --------------HHHHHHhCCCCC--CchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHH
Q 030566 60 --------------EDVMEELGLGPN--GGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN 121 (175)
Q Consensus 60 --------------~~~~~~~~l~~~--~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~ 121 (175)
..+++.+++... .........+ .++++..+++++.. +|++++||||....+......+.+
T Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEPt~gLD~~~~~~l~~ 195 (269)
T PRK14259 118 ARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAI--EPEVILMDEPCSALDPISTLKIEE 195 (269)
T ss_pred hhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHHH
Confidence 112222222110 0000111223 38899999999999 999999999966666667778888
Q ss_pred HHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEecc
Q 030566 122 FVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 122 ~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
+++++++ +.|| +++||+++++.++||++++|..
T Consensus 196 ~l~~~~~-~~ti----iivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 196 TMHELKK-NFTI----VIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHHhc-CCEE----EEEeCCHHHHHHhcCEEEEEec
Confidence 9988854 6889 9999999999999999999985
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-28 Score=190.39 Aligned_cols=159 Identities=17% Similarity=0.164 Sum_probs=114.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc---cccceeEEeecCccc-------ccCCCCcc------CCcchhcc------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA-------ENFDYPVA------MDIRELIS------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~---~~~G~I~i~g~~~~~-------~~~~~~~~------~~~~~~~~------ 58 (175)
+||+++|+||||||||||+|+|+|+++ |++|+|.++|.++.. ..++|.+. .++.+++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~ 106 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLH 106 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhhhHHhhc
Confidence 499999999999999999999999974 689999999976421 12222221 13332221
Q ss_pred ------------HHHHHHHhCCCCCC----chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030566 59 ------------LEDVMEELGLGPNG----GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..++++.+++.... ......-+..++|+..+++++.. +|++++||||....+...+..+.+.
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEP~~~LD~~~~~~l~~~ 184 (246)
T PRK14269 107 GMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAI--KPKLLLLDEPTSALDPISSGVIEEL 184 (246)
T ss_pred CcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHHHH
Confidence 11234444443210 00111112348899999999999 9999999999666666777788888
Q ss_pred HHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 123 VDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++++++ +.|+ +++||+++++.+++|+++++..|..+.++
T Consensus 185 l~~~~~-~~ti----ii~tH~~~~~~~~~d~i~~l~~G~i~~~g 223 (246)
T PRK14269 185 LKELSH-NLSM----IMVTHNMQQGKRVADYTAFFHLGELIEFG 223 (246)
T ss_pred HHHHhC-CCEE----EEEecCHHHHHhhCcEEEEEECCEEEEEC
Confidence 888864 8899 99999999999999999999988876543
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=183.51 Aligned_cols=142 Identities=20% Similarity=0.129 Sum_probs=102.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------ccCCCCc-------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYPV-------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~~-------~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++|.+ ..++.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 104 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGA 104 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcCCc
Confidence 599999999999999999999999999999999999876421 1122222 123333221
Q ss_pred ---HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEE
Q 030566 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCA 135 (175)
Q Consensus 59 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli 135 (175)
..++++.+++..........-+..++++..+++++.. +|++++||||....+....+.+.+++++++++|.|+
T Consensus 105 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti-- 180 (198)
T TIGR01189 105 QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLS--RAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIV-- 180 (198)
T ss_pred HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEE--
Confidence 1233444454432211111123348899999999999 999999999966666777788888999987778999
Q ss_pred EEeeeccchhhhh
Q 030566 136 VYLLDSQVCIRFR 148 (175)
Q Consensus 136 ~~l~~sH~~~~~~ 148 (175)
+++||+..++.
T Consensus 181 --i~~sH~~~~~~ 191 (198)
T TIGR01189 181 --LLTTHQDLGLV 191 (198)
T ss_pred --EEEEccccccc
Confidence 99999886553
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-28 Score=176.20 Aligned_cols=119 Identities=17% Similarity=0.097 Sum_probs=98.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|. ..+++.+ + -+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----~~i~~~~--~--------------------------lS 72 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----VKIGYFE--Q--------------------------LS 72 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----EEEEEEc--c--------------------------CC
Confidence 59999999999999999999999999999999999874 1233333 1 22
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccc
Q 030566 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
..++++..+++++.. +|+++++|||....+....+.+.+.++++ +.|+ +++||+.+++..+||+++.+..+
T Consensus 73 ~G~~~rv~laral~~--~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~ti----l~~th~~~~~~~~~d~v~~l~~g 143 (144)
T cd03221 73 GGEKMRLALAKLLLE--NPNLLLLDEPTNHLDLESIEALEEALKEY---PGTV----ILVSHDRYFLDQVATKIIELEDG 143 (144)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEE----EEEECCHHHHHHhCCEEEEEeCC
Confidence 357888999999999 99999999996555566666677777665 4688 99999999999999999998765
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-28 Score=213.73 Aligned_cols=160 Identities=15% Similarity=0.096 Sum_probs=118.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCCCc---------cCCcchhcc---
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV---------AMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~---------~~~~~~~~~--- 58 (175)
+||+++|+|+||||||||+|+|+|+.+|++|+|.++|.++.. ..+++.+ .+++.+++.
T Consensus 349 ~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~ 428 (623)
T PRK10261 349 PGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPL 428 (623)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHH
Confidence 599999999999999999999999999999999999875421 1222222 222322211
Q ss_pred --------------HHHHHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 59 --------------LEDVMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 59 --------------~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
..++++.+++... .......-+..|+||..++++++. +|++||||||+...+......+.++|
T Consensus 429 ~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~--~p~llllDEPts~LD~~~~~~i~~ll 506 (623)
T PRK10261 429 RVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALAL--NPKVIIADEAVSALDVSIRGQIINLL 506 (623)
T ss_pred HHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 1234445555311 111111123348999999999999 99999999996666677777888899
Q ss_pred HHHHhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 124 DHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 124 ~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++++++ |.|| +++||+++++.++||++++|..|..+.+.
T Consensus 507 ~~l~~~~g~tv----i~isHdl~~v~~~~dri~vl~~G~iv~~g 546 (623)
T PRK10261 507 LDLQRDFGIAY----LFISHDMAVVERISHRVAVMYLGQIVEIG 546 (623)
T ss_pred HHHHHhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEec
Confidence 998764 8999 99999999999999999999988766443
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-28 Score=193.70 Aligned_cols=160 Identities=14% Similarity=0.154 Sum_probs=113.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-----ccceeEEeecCccc---------ccCCCCc------cCCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDYPV------AMDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~---------~~~~~~~------~~~~~~~~~~- 59 (175)
+||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.. ..+++.+ ..++.+++..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~ 108 (251)
T PRK14270 29 ENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYG 108 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCCcHHHHHHhH
Confidence 5999999999999999999999999875 79999999876521 1122222 1222222211
Q ss_pred ----------------HHHHHHhCCCCC--CchhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 60 ----------------EDVMEELGLGPN--GGLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~--~~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.++++.+++... ........ +..++++..++++++. +|++++||||....+...+..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l 186 (251)
T PRK14270 109 PRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAV--KPDVILMDEPTSALDPISTLKI 186 (251)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 112233332110 00011112 2338899999999999 9999999999666666777788
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.++|+++++ +.|| +++||+++++.++|++++++..|..+.+.+
T Consensus 187 ~~~L~~~~~-~~ti----iivsH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (251)
T PRK14270 187 EDLMVELKK-EYTI----VIVTHNMQQASRVSDYTAFFLMGDLIEFNK 229 (251)
T ss_pred HHHHHHHHh-CCeE----EEEEcCHHHHHHhcCEEEEEECCeEEEeCC
Confidence 889998866 5889 999999999999999999999988765433
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-28 Score=193.92 Aligned_cols=158 Identities=15% Similarity=0.128 Sum_probs=112.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc-----cccceeEEeecCccc---------ccCCCCcc------CCcchhcc--
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVA------MDIRELIS-- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~-- 58 (175)
+||+++|+||||||||||+|+|+|+.+ |++|+|.++|.++.. +.+++.+. .++.+++.
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~ 117 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFG 117 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHHHHHhhh
Confidence 599999999999999999999999986 589999999876421 12222221 12222221
Q ss_pred ---------------HHHHHHHhCCCCC--CchhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 59 ---------------LEDVMEELGLGPN--GGLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~~--~~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..++++.+++... ........ +..++||..++++++. +|++++||||....+....+.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l 195 (260)
T PRK10744 118 VRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAI--RPEVLLLDEPCSALDPISTGRI 195 (260)
T ss_pred HhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHC--CCCEEEEcCCCccCCHHHHHHH
Confidence 1122333333210 00011112 2348899999999999 9999999999666666667788
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
.++++++++ +.|| +++||+++++..++|+++++..|..+..
T Consensus 196 ~~~L~~~~~-~~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 196 EELITELKQ-DYTV----VIVTHNMQQAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHHHHHhc-CCeE----EEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 889998854 6888 9999999999999999999998876543
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-28 Score=184.97 Aligned_cols=153 Identities=16% Similarity=0.054 Sum_probs=110.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCCCCC-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNG- 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 72 (175)
+||+++|+|+||||||||+|+|+|+.+|++|+|.++|.+... ..+++.+ +....+. .++.+++.+....
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~--q~~~~~~-~tv~~~l~~~~~~~ 109 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIP--QDPTLFS-GTIRSNLDPFDEYS 109 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEe--cCCcccC-ccHHHHhcccCCCC
Confidence 599999999999999999999999999999999999876421 2233333 1112222 1333333221100
Q ss_pred ----------chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeecc
Q 030566 73 ----------GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (175)
Q Consensus 73 ----------~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH 142 (175)
......-+..+++|..+++++.. +|++++||||....+....+.+.++++++. +|.|+ +++||
T Consensus 110 ~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~ti----ii~th 182 (207)
T cd03369 110 DEEIYGALRVSEGGLNLSQGQRQLLCLARALLK--RPRVLVLDEATASIDYATDALIQKTIREEF-TNSTI----LTIAH 182 (207)
T ss_pred HHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEE----EEEeC
Confidence 00011112237899999999999 999999999966655666777888888874 48899 99999
Q ss_pred chhhhhcCCCceeEeccchhhH
Q 030566 143 VCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
+++++.. +|+++++..+..+.
T Consensus 183 ~~~~~~~-~d~v~~l~~g~i~~ 203 (207)
T cd03369 183 RLRTIID-YDKILVMDAGEVKE 203 (207)
T ss_pred CHHHHhh-CCEEEEEECCEEEe
Confidence 9999976 89999999887654
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-28 Score=192.71 Aligned_cols=160 Identities=17% Similarity=0.174 Sum_probs=114.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-----ccceeEEeecCccc---------ccCCCCcc------CCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+|+|+|+++| ++|+|.++|.++.. ..+++.+. .++.+++..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 123 (267)
T PRK14235 44 EKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYG 123 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCCcHHHHHHHH
Confidence 5999999999999999999999999974 89999999976421 11222221 122222210
Q ss_pred -----------------HHHHHHhCCCCCC--chhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchH
Q 030566 60 -----------------EDVMEELGLGPNG--GLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 60 -----------------~~~~~~~~l~~~~--~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
..+++.+++.... ....... +.+++||..+++++.. +|++++||||....+......
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~ 201 (267)
T PRK14235 124 PRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAV--SPEVILMDEPCSALDPIATAK 201 (267)
T ss_pred HHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHH
Confidence 1223333432100 0001112 2348899999999999 999999999966666777778
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+.++|+++++ +.|| +++||+++++..+||++++++.+..+.+++
T Consensus 202 l~~~L~~l~~-~~ti----iivtH~~~~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 202 VEELIDELRQ-NYTI----VIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHhc-CCeE----EEEEcCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 8889998865 6899 999999999999999999999887765543
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-28 Score=205.38 Aligned_cols=160 Identities=18% Similarity=0.173 Sum_probs=120.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc--c----------------cccCCCCccCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--A----------------AENFDYPVAMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~--~----------------~~~~~~~~~~~~~~~~~---- 58 (175)
+||++||+|+||||||||.|+|+|+.+|++|+|.++|.+. . .+..++.|.+++.+.+.
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~ 395 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLR 395 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHh
Confidence 5999999999999999999999999999999999999761 0 01123334444443332
Q ss_pred -------------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 59 -------------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 59 -------------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
..++++.++++.....+. ..++| |+||..+||+++. +|+++++|||....+-.-+..+.++|
T Consensus 396 ~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ry-P~elSGGQrQRvaIARALa~--~P~lli~DEp~SaLDvsvqa~VlnLl 472 (539)
T COG1123 396 IHGGGSGAERRARVAELLELVGLPPEFLDRY-PHELSGGQRQRVAIARALAL--EPKLLILDEPVSALDVSVQAQVLNLL 472 (539)
T ss_pred hhcccchHHHHHHHHHHHHHcCCCHHHHhcC-chhcCcchhHHHHHHHHHhc--CCCEEEecCCccccCHHHHHHHHHHH
Confidence 234567777775422222 24455 9999999999999 99999999993333333344556688
Q ss_pred HHHHh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 124 DHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 124 ~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++++ .|.|. +++|||+..+..+||++++|+.|..|-.+.
T Consensus 473 ~~lq~e~g~t~----lfISHDl~vV~~i~drv~vm~~G~iVE~G~ 513 (539)
T COG1123 473 KDLQEELGLTY----LFISHDLAVVRYIADRVAVMYDGRIVEEGP 513 (539)
T ss_pred HHHHHHhCCEE----EEEeCCHHHHHhhCceEEEEECCeEEEeCC
Confidence 88865 49999 999999999999999999999998776553
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=178.95 Aligned_cols=139 Identities=14% Similarity=0.044 Sum_probs=103.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (175)
+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|.+ +....+ ..++.+++.+.. ...-+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----~~i~~~~--q~~~~~-~~tv~~nl~~~~-----~~~LS 93 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----EDLLFLP--QRPYLP-LGTLREQLIYPW-----DDVLS 93 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----ceEEEEC--CCCccc-cccHHHHhhccC-----CCCCC
Confidence 59999999999999999999999999999999999874 2233333 111112 235666665421 11123
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccc
Q 030566 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
..+++|..++++++. +|++++||||....+....+.+.++++++ +.|+ +++||+.+.. .+||+++.+..+
T Consensus 94 ~G~~~rv~laral~~--~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~ti----iivsh~~~~~-~~~d~i~~l~~~ 163 (166)
T cd03223 94 GGEQQRLAFARLLLH--KPKFVFLDEATSALDEESEDRLYQLLKEL---GITV----ISVGHRPSLW-KFHDRVLDLDGE 163 (166)
T ss_pred HHHHHHHHHHHHHHc--CCCEEEEECCccccCHHHHHHHHHHHHHh---CCEE----EEEeCChhHH-hhCCEEEEEcCC
Confidence 358999999999999 99999999996555556566666677664 5789 9999998865 699999988765
Q ss_pred h
Q 030566 161 H 161 (175)
Q Consensus 161 ~ 161 (175)
-
T Consensus 164 ~ 164 (166)
T cd03223 164 G 164 (166)
T ss_pred C
Confidence 3
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=205.89 Aligned_cols=156 Identities=13% Similarity=0.119 Sum_probs=117.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCcc----------CCcchh-----c
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPVA----------MDIREL-----I 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~~----------~~~~~~-----~ 57 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ..++|.+. .+..++ +
T Consensus 273 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~ 352 (491)
T PRK10982 273 KGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNI 352 (491)
T ss_pred CCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhh
Confidence 599999999999999999999999999999999999865421 11222221 111100 0
Q ss_pred ----------c-------HHHHHHHhCCCCCCchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchH
Q 030566 58 ----------S-------LEDVMEELGLGPNGGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 58 ----------~-------~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
. ..++++.+++.... ......++ .|+||..++++++. +|++++||||+...+...+..
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGq~qrv~la~al~~--~p~illLDEPt~gLD~~~~~~ 429 (491)
T PRK10982 353 RNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPG-HRTQIGSLSGGNQQKVIIGRWLLT--QPEILMLDEPTRGIDVGAKFE 429 (491)
T ss_pred hhhcccccccCcHHHHHHHHHHHHhcCccCCC-cccccccCCcHHHHHHHHHHHHhc--CCCEEEEcCCCcccChhHHHH
Confidence 0 12334445553211 11222334 48999999999999 999999999977777777888
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+.+++++++++|.|| +++||+++++.++||+++++..+..+
T Consensus 430 ~~~~l~~l~~~~~tv----i~vsHd~~~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 430 IYQLIAELAKKDKGI----IIISSEMPELLGITDRILVMSNGLVA 470 (491)
T ss_pred HHHHHHHHHHCCCEE----EEECCChHHHHhhCCEEEEEECCEEE
Confidence 888999998889999 99999999999999999999988765
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-28 Score=190.10 Aligned_cols=159 Identities=15% Similarity=0.184 Sum_probs=113.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-----ccceeEEeecCccc---------ccCCCCcc------CCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. ..+++.+. .++.+++..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~ 107 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFG 107 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCcccHHHHHHHH
Confidence 5999999999999999999999999874 89999999876421 12222221 122222211
Q ss_pred ----------------HHHHHHhCCCCCC--chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 60 ----------------EDVMEELGLGPNG--GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~~--~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
...++.+++.... ........+ .+++|..++++++. +|++++||||....+....+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~--~p~llllDEP~~~LD~~~~~~l 185 (250)
T PRK14262 108 PRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAV--EPEVILLDEPTSALDPIATQRI 185 (250)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhC--CCCEEEEeCCccccCHHHHHHH
Confidence 1112222322110 011111223 38899999999999 9999999999766667777788
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.++++++++ +.|+ +++||+++++.+++|++++++.+..+.++
T Consensus 186 ~~~l~~~~~-~~ti----li~sH~~~~~~~~~d~i~~l~~G~i~~~g 227 (250)
T PRK14262 186 EKLLEELSE-NYTI----VIVTHNIGQAIRIADYIAFMYRGELIEYG 227 (250)
T ss_pred HHHHHHHhc-CcEE----EEEeCCHHHHHHhCCEEEEEECCEEEEec
Confidence 889998865 6899 99999999999999999999988766543
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-28 Score=189.56 Aligned_cols=152 Identities=18% Similarity=0.125 Sum_probs=120.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhc-cHHHHHHHhCCCCCCchhhhHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELI-SLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+||++||+|+||||||||.|+|+|+++|++|+|.+.|.++.... ..+.. ...+.++.+++........+ .
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--------~~~~~~~v~elL~~Vgl~~~~~~ryP-h 108 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--------KEERRERVLELLEKVGLPEEFLYRYP-H 108 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--------hhHHHHHHHHHHHHhCCCHHHhhcCC-c
Confidence 59999999999999999999999999999999999999854322 11111 14567777786654433333 3
Q ss_pred HHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCCcEEEEEeeeccchhhhhcCCCceeE
Q 030566 80 HLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVC 156 (175)
Q Consensus 80 ~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~ 156 (175)
++| |+||..+||+++- +|+++++|||....+.+-+..+.++++++++ .|.|. +++|||+..+..++|++++
T Consensus 109 elSGGQrQRi~IARALal--~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~----lFIsHDL~vv~~isdri~V 182 (268)
T COG4608 109 ELSGGQRQRIGIARALAL--NPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTY----LFISHDLSVVRYISDRIAV 182 (268)
T ss_pred ccCchhhhhHHHHHHHhh--CCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeE----EEEEEEHHhhhhhcccEEE
Confidence 344 9999999999999 9999999999444444445566678999865 59999 9999999999999999999
Q ss_pred eccchhhHHhh
Q 030566 157 FCCTHTVVQRA 167 (175)
Q Consensus 157 ~~~~~~~~~~~ 167 (175)
|.-|+.|-...
T Consensus 183 My~G~iVE~g~ 193 (268)
T COG4608 183 MYLGKIVEIGP 193 (268)
T ss_pred EecCceeEecC
Confidence 99998765443
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=189.13 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=113.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc--c---ccceeEEeecCccc---------ccCCCCc-------cCCcchhcc-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDYPV-------AMDIRELIS- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~--~---~~G~I~i~g~~~~~---------~~~~~~~-------~~~~~~~~~- 58 (175)
+||+++|+|+||||||||+++|+|+.+ | ++|+|.++|.++.. ..+++.+ ..++.+++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 108 (252)
T PRK14256 29 ENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIA 108 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHh
Confidence 599999999999999999999999986 3 68999999976421 1122222 123222221
Q ss_pred ----------------HHHHHHHhCCCCCC--chhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchH
Q 030566 59 ----------------LEDVMEELGLGPNG--GLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 59 ----------------~~~~~~~~~l~~~~--~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
..+.++.+++.... ....... +..++|+..+++++.. +|++++||||....+....+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEP~~gLD~~~~~~ 186 (252)
T PRK14256 109 GYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAV--KPEVILMDEPASALDPISTLK 186 (252)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHH
Confidence 01222233332110 0001112 2348899999999999 999999999966666677778
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+.++++++++ +.|| +++||+++++.++||+++++..+..+..++
T Consensus 187 l~~~l~~~~~-~~ti----iivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14256 187 IEELIEELKE-KYTI----IIVTHNMQQAARVSDYTAFFYMGDLVECGE 230 (252)
T ss_pred HHHHHHHHHh-CCcE----EEEECCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 8889999865 5799 999999999999999999999887665443
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-28 Score=230.79 Aligned_cols=157 Identities=16% Similarity=0.058 Sum_probs=121.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------ccCCCCc-------cCCcchhccH--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYPV-------AMDIRELISL-------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~~-------~~~~~~~~~~-------- 59 (175)
+||++||+||||||||||+|+|+|+++|++|+|.++|+++.. +.+++.+ .+++++++..
T Consensus 1964 ~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~ 2043 (2272)
T TIGR01257 1964 PGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVP 2043 (2272)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCC
Confidence 599999999999999999999999999999999999977531 1233332 2344443321
Q ss_pred --------HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCC
Q 030566 60 --------EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 60 --------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
.++++.+++..........-+.+++||..+++++.. +|++++||||+...+...+..+++++++++++|+
T Consensus 2044 ~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~--~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~ 2121 (2272)
T TIGR01257 2044 AEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIG--CPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGR 2121 (2272)
T ss_pred HHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 123444555432222222234448999999999999 9999999999777777778888999999877799
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|| +++||++++++.+||++++|..|..+
T Consensus 2122 TI----ILtTH~mee~e~lcDrV~IL~~G~i~ 2149 (2272)
T TIGR01257 2122 AV----VLTSHSMEECEALCTRLAIMVKGAFQ 2149 (2272)
T ss_pred EE----EEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99 99999999999999999999887654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-28 Score=190.27 Aligned_cols=159 Identities=18% Similarity=0.232 Sum_probs=113.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc-----cccceeEEeecCccc---------ccCCCCcc------CCcchhcc--
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVA------MDIRELIS-- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~-- 58 (175)
+||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++.. ..++|.+. .++.+++.
T Consensus 30 ~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~ 109 (251)
T PRK14244 30 KREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYG 109 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccCCHHHHHHHH
Confidence 599999999999999999999999986 479999999875421 11222221 12222211
Q ss_pred ----------------HHHHHHHhCCCCCC--chhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchH
Q 030566 59 ----------------LEDVMEELGLGPNG--GLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 59 ----------------~~~~~~~~~l~~~~--~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
..++++.+++.... ....... +..++|+..+++++.. +|++++||||....+....+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~ 187 (251)
T PRK14244 110 PKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAV--KPTMLLMDEPCSALDPVATNV 187 (251)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHH
Confidence 11234444543210 0011112 2348899999999999 999999999966666667778
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+.++|+++++ +.|| +++||+++++.++||+++++..|..+.++
T Consensus 188 l~~~l~~~~~-~~ti----iiisH~~~~~~~~~d~i~~l~~G~i~~~~ 230 (251)
T PRK14244 188 IENLIQELKK-NFTI----IVVTHSMKQAKKVSDRVAFFQSGRIVEYN 230 (251)
T ss_pred HHHHHHHHhc-CCeE----EEEeCCHHHHHhhcCEEEEEECCEEEEeC
Confidence 8889988854 7899 99999999999999999999988766543
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=189.64 Aligned_cols=151 Identities=18% Similarity=0.189 Sum_probs=107.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-----ccceeEEeecCccc---------ccCCCCc-------cCCcchhccH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDYPV-------AMDIRELISL 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~---------~~~~~~~-------~~~~~~~~~~ 59 (175)
+||+++|+||||||||||+|+|+|+.+| ++|+|.++|.++.. ..+++.+ ..++.+++..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~ 108 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVA 108 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHH
Confidence 5999999999999999999999999974 79999999876421 1122222 1233332210
Q ss_pred -----------------HHHHHHhCCCCC--CchhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchH
Q 030566 60 -----------------EDVMEELGLGPN--GGLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 60 -----------------~~~~~~~~l~~~--~~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
.++++.+++... ........ +..++||..+++++.. +|++++||||....+......
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~ 186 (258)
T PRK14241 109 GLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAV--EPDVLLMDEPCSALDPISTLA 186 (258)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHH
Confidence 112223333210 00111112 2338899999999999 999999999966666667778
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEec
Q 030566 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFC 158 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~ 158 (175)
+.++++++++ +.|| +++||+++++.++||+++++.
T Consensus 187 l~~~l~~~~~-~~tv----iivsH~~~~~~~~~d~i~~l~ 221 (258)
T PRK14241 187 IEDLINELKQ-DYTI----VIVTHNMQQAARVSDQTAFFN 221 (258)
T ss_pred HHHHHHHHhc-CCEE----EEEecCHHHHHHhCCEEEEEe
Confidence 8889998854 6888 999999999999999999996
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-28 Score=186.62 Aligned_cols=157 Identities=18% Similarity=0.078 Sum_probs=110.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCcc------CCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA------MDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~------~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. +.+++.+. .++.+++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~ 108 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEE 108 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCCCCCHHH
Confidence 499999999999999999999999999999999999876421 12233321 12222211
Q ss_pred HHHHHHHhCCCCCC-----------chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 LEDVMEELGLGPNG-----------GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 ~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
....++.+++.... ......-+..++++..++++++. +|++++||||....+...++.+.+++++++
T Consensus 109 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~--~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 186 (221)
T cd03244 109 LWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLR--KSKILVLDEATASVDPETDALIQKTIREAF 186 (221)
T ss_pred HHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 11122222221100 00001112238899999999999 999999999966666667778888898885
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+ +.|| +++||+.+++.. +++++++..+..+.+
T Consensus 187 ~-~~ti----i~~sh~~~~~~~-~d~i~~l~~g~~~~~ 218 (221)
T cd03244 187 K-DCTV----LTIAHRLDTIID-SDRILVLDKGRVVEF 218 (221)
T ss_pred C-CCEE----EEEeCCHHHHhh-CCEEEEEECCeEEec
Confidence 4 6888 999999999976 999999998876543
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-28 Score=192.73 Aligned_cols=159 Identities=16% Similarity=0.182 Sum_probs=111.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-----ccceeEEeecCccc---------ccCCCCcc------CCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. ..+++.+. .++.+++..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~ 107 (250)
T PRK14240 28 ENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYG 107 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCcccHHHHHHHH
Confidence 5999999999999999999999999763 69999999876431 12233221 122222211
Q ss_pred ----------------HHHHHHhCCCCC--CchhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 60 ----------------EDVMEELGLGPN--GGLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~--~~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.++++.+++... ........ +..++||..+++++.. +|++++||||....+......+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l 185 (250)
T PRK14240 108 PRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAV--EPEVLLMDEPTSALDPISTLKI 185 (250)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHH
Confidence 011112221100 00001111 2338899999999999 9999999999666667777788
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.++++++++ +.|| +++||+++++.+++++++++..+..+.+.
T Consensus 186 ~~~l~~~~~-~~ti----ii~sH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (250)
T PRK14240 186 EELIQELKK-DYTI----VIVTHNMQQASRISDKTAFFLNGEIVEFG 227 (250)
T ss_pred HHHHHHHhc-CCeE----EEEEeCHHHHHhhCCEEEEEECCEEEEeC
Confidence 889988854 7899 99999999999999999999988766543
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-28 Score=192.79 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=112.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc-----cccceeEEeecCccc---------ccCCCCcc------CCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+|+||||||||+|+|+|+.+ |++|+|.++|.++.. ..++|.+. .++.+++..
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 125 (268)
T PRK14248 46 KHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHA 125 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccHHHHHHHH
Confidence 599999999999999999999999864 689999999876421 12223221 122222110
Q ss_pred ----------------HHHHHHhCCCCCC--chhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 60 ----------------EDVMEELGLGPNG--GLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~~--~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.+.++.+++.... ....... +..++||..++++++. +|+++|||||....+....+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l 203 (268)
T PRK14248 126 LKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAM--KPAVLLLDEPASALDPISNAKI 203 (268)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhC--CCCEEEEcCCCcccCHHHHHHH
Confidence 1112222221100 0011112 2338899999999999 9999999999766667777788
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.++++++++ +.|| +++||+++++.++|++++++..|..+..+
T Consensus 204 ~~~l~~~~~-~~ti----ii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 245 (268)
T PRK14248 204 EELITELKE-EYSI----IIVTHNMQQALRVSDRTAFFLNGDLVEYD 245 (268)
T ss_pred HHHHHHHhc-CCEE----EEEEeCHHHHHHhCCEEEEEECCEEEEeC
Confidence 889999865 6789 99999999999999999999988765543
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.1e-28 Score=211.82 Aligned_cols=162 Identities=14% Similarity=0.129 Sum_probs=119.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc---------------------ccccCCCC---------cc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---------------------AAENFDYP---------VA 50 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~---------------------~~~~~~~~---------~~ 50 (175)
+||++||+||||||||||+|+|+|+++|++|+|.++|..+ +...+++. +.
T Consensus 41 ~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~ 120 (623)
T PRK10261 41 RGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPV 120 (623)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCC
Confidence 4999999999999999999999999999999999877411 00122222 22
Q ss_pred CCcchhcc-----------------HHHHHHHhCCCCC-CchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcc
Q 030566 51 MDIRELIS-----------------LEDVMEELGLGPN-GGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQI 110 (175)
Q Consensus 51 ~~~~~~~~-----------------~~~~~~~~~l~~~-~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~ 110 (175)
+++.+++. ..++++.+++... ........++ .|+||..|+++++. +|++||||||+..
T Consensus 121 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~--~P~lLllDEPt~~ 198 (623)
T PRK10261 121 FTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSC--RPAVLIADEPTTA 198 (623)
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCc
Confidence 23333321 1234555666421 0011122333 49999999999999 9999999999666
Q ss_pred cccccchHHHHHHHHHHhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 111 ELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 111 ~~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
.+......+.+++++++++ |.|| +++||+++++.++||++++|+.|..+..+++
T Consensus 199 LD~~~~~~l~~ll~~l~~~~g~tv----i~itHdl~~~~~~adri~vl~~G~i~~~g~~ 253 (623)
T PRK10261 199 LDVTIQAQILQLIKVLQKEMSMGV----IFITHDMGVVAEIADRVLVMYQGEAVETGSV 253 (623)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCEE----EEEcCCHHHHHHhCCEEEEeeCCeecccCCH
Confidence 6677777888899998754 8999 9999999999999999999999887765443
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=189.45 Aligned_cols=159 Identities=15% Similarity=0.157 Sum_probs=113.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcc---Ccc--ccceeEEeecCccc---------ccCCCCcc------CCcchhcc--
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRH---CET--VRRTMHIVNLDPAA---------ENFDYPVA------MDIRELIS-- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl---~~~--~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~-- 58 (175)
+||+++|+||||||||||+|+|+|+ .+| ++|+|.++|.++.. ..++|.+. .++.+++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~ 107 (250)
T PRK14245 28 EKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYG 107 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCcccHHHHHHHH
Confidence 5999999999999999999999997 454 58999999976421 12233221 12222221
Q ss_pred ---------------HHHHHHHhCCCCCC--chhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 59 ---------------LEDVMEELGLGPNG--GLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~~~--~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..++++.+++.... ....... +..++++..+++++.. +|++++||||....+...++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l 185 (250)
T PRK14245 108 LRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAV--SPSVLLMDEPASALDPISTAKV 185 (250)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHH
Confidence 11233334442110 0111112 3348899999999999 9999999999666666677788
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.++|++++ ++.|| +++||+++++.++||+++++..|..+.+.
T Consensus 186 ~~~l~~~~-~~~ti----iivtH~~~~~~~~~d~v~~l~~G~~~~~~ 227 (250)
T PRK14245 186 EELIHELK-KDYTI----VIVTHNMQQAARVSDKTAFFYMGEMVEYD 227 (250)
T ss_pred HHHHHHHh-cCCeE----EEEeCCHHHHHhhCCEEEEEECCEEEEEC
Confidence 88999985 47899 99999999999999999999988776543
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=206.90 Aligned_cols=159 Identities=11% Similarity=0.021 Sum_probs=117.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEe-ecC---cc----------cccCCCCc-------cCCcchhcc-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-NLD---PA----------AENFDYPV-------AMDIRELIS- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~-g~~---~~----------~~~~~~~~-------~~~~~~~~~- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++ |.+ +. ...++|.+ .+++.+++.
T Consensus 309 ~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~ 388 (520)
T TIGR03269 309 EGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTE 388 (520)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHH
Confidence 599999999999999999999999999999999996 531 10 11122222 223333331
Q ss_pred --------------HHHHHHHhCCCCCC---chhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 59 --------------LEDVMEELGLGPNG---GLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 --------------~~~~~~~~~l~~~~---~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..++++.+++.... ........+| |+||..+++++.. +|+++|||||+...+......+
T Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~lLllDEPt~~LD~~~~~~l 466 (520)
T TIGR03269 389 AIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIK--EPRIVILDEPTGTMDPITKVDV 466 (520)
T ss_pred HHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 12344556664310 1122223444 8999999999999 9999999999777777777788
Q ss_pred HHHHHHHHhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 120 RNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 120 ~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
.+++++++++ |.|| +++||+++++.++||++++++.|..+.+
T Consensus 467 ~~~l~~l~~~~g~tv----i~vsHd~~~~~~~~d~i~~l~~G~i~~~ 509 (520)
T TIGR03269 467 THSILKAREEMEQTF----IIVSHDMDFVLDVCDRAALMRDGKIVKI 509 (520)
T ss_pred HHHHHHHHHHcCcEE----EEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 8899998654 8999 9999999999999999999998876544
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=183.27 Aligned_cols=160 Identities=16% Similarity=0.132 Sum_probs=121.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCc-----------------------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV----------------------- 49 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~----------------------- 49 (175)
+||-.+|+||||||||||+++++|..+|.+|.+.+.|+.... +.++++.
T Consensus 56 ~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~ 135 (257)
T COG1119 56 PGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFA 135 (257)
T ss_pred CCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccc
Confidence 489999999999999999999999999999999998875422 1111111
Q ss_pred -------cCCcchhccHHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030566 50 -------AMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 50 -------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
.++..+.-....+++.+++..........-+-+++++.+++|+++. +|++||||||.+..+..+++.+.+.
T Consensus 136 siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~--~P~LLiLDEP~~GLDl~~re~ll~~ 213 (257)
T COG1119 136 SIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVK--DPELLILDEPAQGLDLIAREQLLNR 213 (257)
T ss_pred cccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhc--CCCEEEecCccccCChHHHHHHHHH
Confidence 1111112224566777776643333332223348889999999999 9999999999666666677778888
Q ss_pred HHHHHhC--CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 123 VDHLKSR--NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 123 l~~l~~~--g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+.++... +.++ +++||..+|+-..++++..+..+++++|+
T Consensus 214 l~~~~~~~~~~~l----l~VtHh~eEi~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 214 LEELAASPGAPAL----LFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred HHHHhcCCCCceE----EEEEcchhhcccccceEEEeeCCceeecc
Confidence 8888654 7788 99999999999999999999999998875
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=184.46 Aligned_cols=153 Identities=16% Similarity=0.171 Sum_probs=104.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCCCCcc------CCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPVA------MDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~~------~~~~~~~~----- 58 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++|.+. .+..+++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~ 105 (218)
T cd03290 26 TGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPF 105 (218)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccccHHHHHhhcCcC
Confidence 599999999999999999999999999999999999875421 11222221 12222211
Q ss_pred ----HHHHHHHhCCCCCC-----------chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHH--
Q 030566 59 ----LEDVMEELGLGPNG-----------GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN-- 121 (175)
Q Consensus 59 ----~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~-- 121 (175)
...+++.+++.... ......-+..+++|..++++++. +|+++|||||....+....+.+.+
T Consensus 106 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~~~~ 183 (218)
T cd03290 106 NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ--NTNIVFLDDPFSALDIHLSDHLMQEG 183 (218)
T ss_pred CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCccccCHHHHHHHHHHH
Confidence 01122222221100 00011122348899999999999 999999999966655655666665
Q ss_pred HHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccc
Q 030566 122 FVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 122 ~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
+++.++++|.|+ +++||+.+++. .||+++++..+
T Consensus 184 ll~~~~~~~~ti----i~~sH~~~~~~-~~d~i~~l~~G 217 (218)
T cd03290 184 ILKFLQDDKRTL----VLVTHKLQYLP-HADWIIAMKDG 217 (218)
T ss_pred HHHHHhcCCCEE----EEEeCChHHHh-hCCEEEEecCC
Confidence 666676678999 99999999985 69999988764
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=188.87 Aligned_cols=158 Identities=11% Similarity=0.150 Sum_probs=112.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc-----cccceeEEeecCccc---------ccCCCCc------cCCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPV------AMDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~------~~~~~~~~~~- 59 (175)
+||+++|+|+||||||||+|+|+|+++ |++|+|.++|.++.. ..+++.+ ..++.+++..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~ 108 (251)
T PRK14251 29 EKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYG 108 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCCcHHHHHHHH
Confidence 599999999999999999999999987 479999999875421 1122221 1133322211
Q ss_pred ----------------HHHHHHhCCCCC--CchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 60 ----------------EDVMEELGLGPN--GGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~--~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.++++.+++... .........+ +++|+..+++++.. +|++++||||....+......+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~--~p~llllDEP~~~LD~~~~~~l 186 (251)
T PRK14251 109 LKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAV--RPKVVLLDEPTSALDPISSSEI 186 (251)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCCccCCHHHHHHH
Confidence 122233333210 0011112223 48899999999999 9999999999666666677788
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
.++++++++ +.|| +++||+++++.+++++++++..|..+..
T Consensus 187 ~~~l~~~~~-~~ti----iiisH~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14251 187 EETLMELKH-QYTF----IMVTHNLQQAGRISDQTAFLMNGDLIEA 227 (251)
T ss_pred HHHHHHHHc-CCeE----EEEECCHHHHHhhcCEEEEEECCEEEEe
Confidence 888988854 6899 9999999999999999999988776544
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-27 Score=190.04 Aligned_cols=160 Identities=16% Similarity=0.176 Sum_probs=113.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc--c---ccceeEEeecCccc---------ccCCCCcc------CCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~--~---~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+++|+|+.+ | ++|+|.++|.++.. ..++|.+. .++.+++..
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 116 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYG 116 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccccCHHHHHHhH
Confidence 599999999999999999999999987 3 59999999876421 12233221 122222210
Q ss_pred ----------------HHHHHHhCCCCC--CchhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 60 ----------------EDVMEELGLGPN--GGLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~--~~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.++++.+++... ........ +..++++..+++++.. +|++++||||....+......+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l 194 (259)
T PRK14274 117 PRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALAT--NPDVLLMDEPTSALDPVSTRKI 194 (259)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHH
Confidence 112223333211 00011112 2348899999999999 9999999999666666677788
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.++++++++ +.|+ +++||+++++.++||+++++..+..+.+++
T Consensus 195 ~~~l~~~~~-~~ti----iivtH~~~~~~~~~d~i~~l~~G~i~~~g~ 237 (259)
T PRK14274 195 EELILKLKE-KYTI----VIVTHNMQQAARVSDQTAFFYMGELVECND 237 (259)
T ss_pred HHHHHHHhc-CCEE----EEEEcCHHHHHHhCCEEEEEECCEEEEECC
Confidence 889999865 6899 999999999999999999999888765544
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=190.79 Aligned_cols=160 Identities=19% Similarity=0.165 Sum_probs=113.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc-----cccceeEEeecCccc---------ccCCCCcc------CCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+|+|+|+++ |++|+|.++|.++.. +.+++.+. .++.+++..
T Consensus 45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~ 124 (267)
T PRK14237 45 KNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFA 124 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccccccHHHHHHhH
Confidence 599999999999999999999999986 589999999876521 12333321 122222211
Q ss_pred ----------------HHHHHHhCCCCC----CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 60 ----------------EDVMEELGLGPN----GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.++++.+++... .......-+..++++..+++++.. +|++++||||....+....+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l 202 (267)
T PRK14237 125 LERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAV--KPDILLMDEPASALDPISTMQL 202 (267)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 111222332110 000111112347899999999999 9999999999666666667788
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.++++++++ +.|| +++||+++++.++||+++++..|..+.++.
T Consensus 203 ~~~l~~~~~-~~ti----ii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 245 (267)
T PRK14237 203 EETMFELKK-NYTI----IIVTHNMQQAARASDYTAFFYLGDLIEYDK 245 (267)
T ss_pred HHHHHHHhc-CCEE----EEEecCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 889998854 6889 999999999999999999999888765544
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=182.10 Aligned_cols=152 Identities=20% Similarity=0.095 Sum_probs=101.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC-cccccCCCCccCCcchhcc---------HHHHHHHhCCCC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLGP 70 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~ 70 (175)
+|++++|+||||||||||+++|+|+.+|++|+|.++|.- ...++..+. ..++.+++. .....+.+++..
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~-~~t~~enl~~~~~~~~~~~~~~~~~~~l~~ 108 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQ-NGTIRENILFGKPFDEERYEKVIKACALEP 108 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhc-cCcHHHHhccCCCcCHHHHHHHHHHcCcHH
Confidence 599999999999999999999999999999999998721 111111111 123222221 111121212110
Q ss_pred ---------C--CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHH-HHHHHHhCCCcEEEEEe
Q 030566 71 ---------N--GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN-FVDHLKSRNFNVCAVYL 138 (175)
Q Consensus 71 ---------~--~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~-~l~~l~~~g~tvli~~l 138 (175)
. .......-+..++++..++++++. +|++++||||....+....+.+.+ +++++.++|.|| +
T Consensus 109 ~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tv----i 182 (204)
T cd03250 109 DLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYS--DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTR----I 182 (204)
T ss_pred HHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEE----E
Confidence 0 000111123348899999999999 999999999955555555555555 456665568999 9
Q ss_pred eeccchhhhhcCCCceeEeccc
Q 030566 139 LDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
++||+++.+.. +++++++..+
T Consensus 183 ~~sh~~~~~~~-~d~i~~l~~G 203 (204)
T cd03250 183 LVTHQLQLLPH-ADQIVVLDNG 203 (204)
T ss_pred EEeCCHHHHhh-CCEEEEEeCC
Confidence 99999999988 9999998765
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=206.89 Aligned_cols=159 Identities=15% Similarity=0.176 Sum_probs=116.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-----ccceeEEeecCccc-----------ccCCCCcc---------CCcch
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-----------ENFDYPVA---------MDIRE 55 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~-----------~~~~~~~~---------~~~~~ 55 (175)
+||+++|+||||||||||+|+|+|+++| ++|+|.++|.++.. ..+++.+. .+..+
T Consensus 34 ~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~ 113 (529)
T PRK15134 34 AGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEK 113 (529)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHH
Confidence 4999999999999999999999999986 79999999876421 12333321 11111
Q ss_pred hcc-----------------HHHHHHHhCCCCCC-chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCccccccc
Q 030566 56 LIS-----------------LEDVMEELGLGPNG-GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTH 115 (175)
Q Consensus 56 ~~~-----------------~~~~~~~~~l~~~~-~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~ 115 (175)
++. ..++++.+++.... ........+ .|+||..+++++.. +|++++||||+...+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~--~p~llllDEPt~~LD~~~ 191 (529)
T PRK15134 114 QLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLT--RPELLIADEPTTALDVSV 191 (529)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCccCHHH
Confidence 110 12344445553210 011122333 38999999999999 999999999977777777
Q ss_pred chHHHHHHHHHHhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 116 VPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 116 ~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
...+.++|++++++ |.|| +++||+++++..+||++++|+.|..+..
T Consensus 192 ~~~l~~~l~~l~~~~g~tv----i~vtHd~~~~~~~~dri~~l~~G~i~~~ 238 (529)
T PRK15134 192 QAQILQLLRELQQELNMGL----LFITHNLSIVRKLADRVAVMQNGRCVEQ 238 (529)
T ss_pred HHHHHHHHHHHHHhcCCeE----EEEcCcHHHHHHhcCEEEEEECCEEEEe
Confidence 88888899998764 8999 9999999999999999999998876544
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=205.77 Aligned_cols=161 Identities=13% Similarity=0.036 Sum_probs=115.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC--ccccceeEEee-----------------------cCcc--------------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVN-----------------------LDPA-------------- 41 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~--~~~~G~I~i~g-----------------------~~~~-------------- 41 (175)
+||+++|+||||||||||+|+|+|+. +|++|+|.++| .++.
T Consensus 25 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 104 (520)
T TIGR03269 25 EGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLR 104 (520)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHH
Confidence 49999999999999999999999997 79999999972 1110
Q ss_pred ---cccCCCCc--------cCCcchhcc----------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhh
Q 030566 42 ---AENFDYPV--------AMDIRELIS----------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELD 94 (175)
Q Consensus 42 ---~~~~~~~~--------~~~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 94 (175)
.+.+++.+ ..++.+++. ..++++.+++..........-+..|+||..+++++.
T Consensus 105 ~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~ 184 (520)
T TIGR03269 105 RRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLA 184 (520)
T ss_pred HHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHh
Confidence 01122221 122222221 122344455532211111112334899999999999
Q ss_pred ccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 95 NYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 95 ~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
. +|++++||||+...+....+.+.++++++++ .|.|| +++||+++.+.++||+++.|..+..+.+++
T Consensus 185 ~--~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv----iivtHd~~~~~~~~d~i~~l~~G~i~~~g~ 252 (520)
T TIGR03269 185 K--EPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISM----VLTSHWPEVIEDLSDKAIWLENGEIKEEGT 252 (520)
T ss_pred c--CCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEE----EEEeCCHHHHHHhcCEEEEEeCCEEeeecC
Confidence 9 9999999999777777778888889999854 58999 999999999999999999999887655443
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=189.70 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=111.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccc-----cceeEEeecCccc---------ccCCCCcc------CCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~-----~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.. +.++|.+. .++.+++..
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 108 (251)
T PRK14249 29 ERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFG 108 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcCcHHHHHhhH
Confidence 59999999999999999999999999987 6999999876421 12223221 122222210
Q ss_pred ----------------HHHHHHhCCCCCC--chhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 60 ----------------EDVMEELGLGPNG--GLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~~--~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
...++.+++.... ....... +..++|+..++++++. +|++++||||....+......+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l 186 (251)
T PRK14249 109 PRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAI--EPEVILMDEPCSALDPVSTMRI 186 (251)
T ss_pred HHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHH
Confidence 0011112221100 0001111 2238899999999999 9999999999666666667778
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
.+++++++ ++.|| +++||+++++.++||++++++.+..+..
T Consensus 187 ~~~l~~~~-~~~ti----livsh~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14249 187 EELMQELK-QNYTI----AIVTHNMQQAARASDWTGFLLTGDLVEY 227 (251)
T ss_pred HHHHHHHh-cCCEE----EEEeCCHHHHHhhCCEEEEEeCCeEEEe
Confidence 88998885 57899 9999999999999999999998776543
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=188.54 Aligned_cols=160 Identities=16% Similarity=0.123 Sum_probs=111.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC--cc---ccceeEEeecCccc---------ccCCCCcc------CCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC--ET---VRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~--~~---~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+++|+|+. +| ++|+|.++|.++.. ..+++.+. .++.+++..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 109 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYG 109 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCcCcHHHHHHHH
Confidence 59999999999999999999999985 36 59999999875421 12233221 233332211
Q ss_pred ----------------HHHHHHhCCCCCC--chhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 60 ----------------EDVMEELGLGPNG--GLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~~--~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..+++.+++.... ....... +.+++++..+++++.. +|+++|||||....+....+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l 187 (252)
T PRK14239 110 LRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLAT--SPKIILLDEPTSALDPISAGKI 187 (252)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHH
Confidence 0112222221100 0001111 2337899999999999 9999999999766667777788
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.++|+++++ +.|| +++||+++++.++||+++++..+..+.+++
T Consensus 188 ~~~l~~~~~-~~ti----i~~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T PRK14239 188 EETLLGLKD-DYTM----LLVTRSMQQASRISDRTGFFLDGDLIEYND 230 (252)
T ss_pred HHHHHHHhh-CCeE----EEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 889998865 6899 999999999999999999999887665433
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-27 Score=186.11 Aligned_cols=159 Identities=14% Similarity=0.175 Sum_probs=112.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccc-----cceeEEeecCccc---------ccCCCCc-------cCCcchhccH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDYPV-------AMDIRELISL 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~-----~G~I~i~g~~~~~---------~~~~~~~-------~~~~~~~~~~ 59 (175)
+||+++|+||||||||||+|+|+|+++|+ +|+|.++|.++.. ..++|.+ ..+..+++..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~ 108 (252)
T PRK14272 29 RGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVA 108 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHH
Confidence 59999999999999999999999999864 8999999876421 1122222 1233222211
Q ss_pred -------------HH----HHHHhCCCCC--CchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchH
Q 030566 60 -------------ED----VMEELGLGPN--GGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 60 -------------~~----~~~~~~l~~~--~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
.+ .++.+++... .........+ .+++|..+++++.. +|++++||||....+......
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~ 186 (252)
T PRK14272 109 GLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAV--EPEILLMDEPTSALDPASTAR 186 (252)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHH
Confidence 00 0111211100 0001111223 38899999999999 999999999966666777778
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+.++++++++ +.|+ +++||+.+++.++||+++++..+..+.++
T Consensus 187 l~~~l~~~~~-~~ti----ii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14272 187 IEDLMTDLKK-VTTI----IIVTHNMHQAARVSDTTSFFLVGDLVEHG 229 (252)
T ss_pred HHHHHHHHhc-CCeE----EEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 8889998864 6899 99999999999999999999888766543
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-27 Score=177.19 Aligned_cols=144 Identities=17% Similarity=0.119 Sum_probs=109.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccc--cCCCCccCCcchhccHHHHHHHhCCCCC-Cchhhh
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--NFDYPVAMDIRELISLEDVMEELGLGPN-GGLIYC 77 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 77 (175)
+|++++|+||||||||||+|++. +++|++.+++...... .+.+.+ ..++++.+++... ......
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~---------q~~~l~~~~L~~~~~~~~~~ 86 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFID---------QLQFLIDVGLGYLTLGQKLS 86 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEh---------HHHHHHHcCCCccccCCCcC
Confidence 59999999999999999999985 3699999887632211 122221 1567888887642 222222
Q ss_pred HHHHHHHHHHHHHHHhhccCC--CCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCcee
Q 030566 78 MEHLEDNLDDWLAEELDNYLD--DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIV 155 (175)
Q Consensus 78 ~~~~~~~~~~~l~~~l~~~~~--p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~ 155 (175)
.-+..++++..+++++.. + |++++||||....+....+.+.+.+++++++|.|| +++||+++++ ..+|+++
T Consensus 87 ~LSgGq~qrl~laral~~--~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tv----IivSH~~~~~-~~~d~i~ 159 (176)
T cd03238 87 TLSGGELQRVKLASELFS--EPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTV----ILIEHNLDVL-SSADWII 159 (176)
T ss_pred cCCHHHHHHHHHHHHHhh--CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEE----EEEeCCHHHH-HhCCEEE
Confidence 234458999999999999 9 99999999977766777778888898887779999 9999999987 5799999
Q ss_pred EeccchhhH
Q 030566 156 CFCCTHTVV 164 (175)
Q Consensus 156 ~~~~~~~~~ 164 (175)
.+..+...+
T Consensus 160 ~l~~g~~~~ 168 (176)
T cd03238 160 DFGPGSGKS 168 (176)
T ss_pred EECCCCCCC
Confidence 998766543
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-27 Score=190.35 Aligned_cols=160 Identities=16% Similarity=0.156 Sum_probs=111.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc-----cccceeEEeecCccc---------ccCCCCcc------CCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. ..++|.+. .++.+++..
T Consensus 49 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~ 128 (271)
T PRK14238 49 ENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYG 128 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccccHHHHHHHH
Confidence 599999999999999999999999987 699999999876421 12223221 122222210
Q ss_pred ----------------HHHHHHhCCCCCC--chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 60 ----------------EDVMEELGLGPNG--GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~~--~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.+.++.+++.... ........+ ++++|..++++++. +|++++||||....+......+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~--~p~lllLDEPt~~LD~~~~~~l 206 (271)
T PRK14238 129 PKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAI--EPDVILMDEPTSALDPISTLKV 206 (271)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHH
Confidence 0001111100000 000111222 38899999999999 9999999999666666667788
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.++++++++ +.|| +++||+++++.++||+++++..|..+..+.
T Consensus 207 ~~~l~~~~~-~~ti----iivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 249 (271)
T PRK14238 207 EELVQELKK-DYSI----IIVTHNMQQAARISDKTAFFLNGYVNEYDD 249 (271)
T ss_pred HHHHHHHHc-CCEE----EEEEcCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 889988865 6899 999999999999999999999887765443
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-27 Score=207.50 Aligned_cols=153 Identities=18% Similarity=0.120 Sum_probs=115.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeE-----------EeecCccc---------ccCCCCcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA---------ENFDYPVA---------- 50 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~-----------i~g~~~~~---------~~~~~~~~---------- 50 (175)
+|+++||+||||||||||+|+|+|+++|++|+|. ++|.++.. ..+.+.+.
T Consensus 98 ~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~ 177 (590)
T PRK13409 98 EGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFK 177 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhc
Confidence 5999999999999999999999999999999997 77766421 01111111
Q ss_pred CCcchhcc-------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 51 MDIRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 51 ~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
.++.+++. ..++++.+++..........-+..++|+..++++++. +|++++||||+...+...+..+.+++
T Consensus 178 ~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~--~p~lllLDEPts~LD~~~~~~l~~~i 255 (590)
T PRK13409 178 GKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLR--DADFYFFDEPTSYLDIRQRLNVARLI 255 (590)
T ss_pred chHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 02222221 2345566666432222222223348999999999999 99999999997777777788888899
Q ss_pred HHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccc
Q 030566 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
+++++ |.|| +++||+++++..++|++.++..+
T Consensus 256 ~~l~~-g~tv----IivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 256 RELAE-GKYV----LVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHC-CCEE----EEEeCCHHHHHHhCCEEEEEeCC
Confidence 99987 9999 99999999999999999999764
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-27 Score=178.60 Aligned_cols=160 Identities=15% Similarity=0.132 Sum_probs=119.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------------ccCCCCccCCcchhcc------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------------ENFDYPVAMDIRELIS------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------------~~~~~~~~~~~~~~~~------ 58 (175)
+|+++.++|.||||||||+++|+|-++|++|+|.++|.++.. +..+..+.+++.+++.
T Consensus 31 ~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg 110 (263)
T COG1101 31 EGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRG 110 (263)
T ss_pred CCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcC
Confidence 599999999999999999999999999999999999987532 1123334455555543
Q ss_pred ----------------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHH
Q 030566 59 ----------------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120 (175)
Q Consensus 59 ----------------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~ 120 (175)
+..-+..++++..+....+...+| |+|..+|..+..+ .|++++|||.+...+......++
T Consensus 111 ~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~--~pkiLLLDEHTAALDPkta~~vm 188 (263)
T COG1101 111 KKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLH--PPKILLLDEHTAALDPKTAEFVM 188 (263)
T ss_pred cccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcC--CCcEEEecchhhcCCcchHHHHH
Confidence 123334445554443444445555 6665566666666 99999999996666666666677
Q ss_pred HHHHHH-HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 121 NFVDHL-KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 121 ~~l~~l-~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++-.++ .+.+.|. +|+||+|+++.+|-+|.+++++|.+|+..
T Consensus 189 ~lT~kiV~~~klTt----lMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 189 ELTAKIVEEHKLTT----LMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHHHHHHhcCCce----EEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 777776 4568999 99999999999999999999999988643
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-27 Score=173.13 Aligned_cols=133 Identities=19% Similarity=0.136 Sum_probs=104.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (175)
+|++++|+|+||||||||+++|+|+++|++|+|+++|.+...... ......+.+... -+
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~--------------~~~~~~i~~~~q-------lS 82 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPL--------------EELRRRIGYVPQ-------LS 82 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCH--------------HHHHhceEEEee-------CC
Confidence 589999999999999999999999999999999999875432100 000000111000 22
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccc
Q 030566 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
..++++..++++++. +|++++||||....+......+.+.++++++++.|+ +++||+++++..+||+++.++.+
T Consensus 83 ~G~~~r~~l~~~l~~--~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~ti----i~~sh~~~~~~~~~d~i~~l~~g 156 (157)
T cd00267 83 GGQRQRVALARALLL--NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTV----IIVTHDPELAELAADRVIVLKDG 156 (157)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEE----EEEeCCHHHHHHhCCEEEEEeCc
Confidence 347888999999999 999999999966666677778888998887667899 99999999999999999988764
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-27 Score=188.54 Aligned_cols=160 Identities=14% Similarity=0.141 Sum_probs=113.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc-----cccceeEEeecCccc---------ccCCCCcc------CCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..+++.+. .++.+++..
T Consensus 50 ~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~ 129 (272)
T PRK14236 50 KNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYG 129 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcccHHHHHHHH
Confidence 599999999999999999999999987 489999999876421 12222221 122222210
Q ss_pred ----------------HHHHHHhCCCCC--CchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 60 ----------------EDVMEELGLGPN--GGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~--~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.++++.+++... .........+ .+++|..+++++.. +|++++||||....+....+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l 207 (272)
T PRK14236 130 LRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAI--EPEVLLLDEPTSALDPISTLKI 207 (272)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHH
Confidence 111222222210 0000111223 48899999999999 9999999999666666677788
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.++++++++ +.|| +++||+++++.++||+++++..+..+.+++
T Consensus 208 ~~~L~~~~~-~~ti----iivtH~~~~~~~~~d~i~~l~~G~i~~~g~ 250 (272)
T PRK14236 208 EELITELKS-KYTI----VIVTHNMQQAARVSDYTAFMYMGKLVEYGD 250 (272)
T ss_pred HHHHHHHHh-CCeE----EEEeCCHHHHHhhCCEEEEEECCEEEecCC
Confidence 889999865 6888 999999999999999999999888765543
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-27 Score=190.17 Aligned_cols=158 Identities=16% Similarity=0.211 Sum_probs=111.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc-----cccceeEEeecCccc---------ccCCCCcc------CCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+++|+|+.+ |++|+|.++|.++.. ..++|.+. .++.+++..
T Consensus 64 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~ 143 (286)
T PRK14275 64 SKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYG 143 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCccCHHHHHHhH
Confidence 499999999999999999999999864 499999999875421 12333321 122222210
Q ss_pred ----------------HHHHHHhCCCCC--CchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 60 ----------------EDVMEELGLGPN--GGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~--~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.++++.+++... .........+ +++|+..+++++.. +|+++|||||....+....+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lllLDEPt~gLD~~~~~~l 221 (286)
T PRK14275 144 PRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAV--EPEILLLDEPTSALDPKATAKI 221 (286)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHH
Confidence 112222332110 0011112223 48899999999999 9999999999666666667778
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
.++++++++ +.|| +++||+++++.++||+++++..|..+..
T Consensus 222 ~~~L~~~~~-~~tv----IivsH~~~~~~~~~d~i~~L~~G~i~~~ 262 (286)
T PRK14275 222 EDLIQELRG-SYTI----MIVTHNMQQASRVSDYTMFFYEGVLVEH 262 (286)
T ss_pred HHHHHHHhc-CCeE----EEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 888988865 5788 9999999999999999999988776543
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-27 Score=188.88 Aligned_cols=148 Identities=14% Similarity=0.159 Sum_probs=105.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc-----cccceeEEeecCccc---------ccCCCCccCCcchhccHHHHHHHh
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVAMDIRELISLEDVMEEL 66 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 66 (175)
+||+++|+|+||||||||+|+|+|+.+ |++|+|.++|.++.. ..+++.+ +....+. .++.+++
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~--q~~~~~~-~tv~enl 111 (264)
T PRK14243 35 KNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVF--QKPNPFP-KSIYDNI 111 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEc--cCCcccc-ccHHHHH
Confidence 599999999999999999999999976 489999999876421 1223322 1111111 1222222
Q ss_pred ------------------------CCCCCC--chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchH
Q 030566 67 ------------------------GLGPNG--GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 67 ------------------------~l~~~~--~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
++.... ........+ .++||..+++++.. +|+++|||||....+....+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~ 189 (264)
T PRK14243 112 AYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAV--QPEVILMDEPCSALDPISTLR 189 (264)
T ss_pred HhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHH
Confidence 211000 000011122 37899999999999 999999999966666777778
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEec
Q 030566 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFC 158 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~ 158 (175)
+.++++++++ +.|| +++||+++++.++||+++++.
T Consensus 190 l~~~L~~~~~-~~tv----i~vtH~~~~~~~~~d~v~~l~ 224 (264)
T PRK14243 190 IEELMHELKE-QYTI----IIVTHNMQQAARVSDMTAFFN 224 (264)
T ss_pred HHHHHHHHhc-CCEE----EEEecCHHHHHHhCCEEEEEe
Confidence 8889999865 5789 999999999999999999997
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-27 Score=205.21 Aligned_cols=159 Identities=19% Similarity=0.155 Sum_probs=115.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCCCc---------cCCcchhcc---
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPV---------AMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~~~---------~~~~~~~~~--- 58 (175)
+||+++|+||||||||||+|+|+|+++ ++|+|+++|.++.. ..++|.+ ..++.+++.
T Consensus 311 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~ 389 (529)
T PRK15134 311 PGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGL 389 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHH
Confidence 599999999999999999999999995 89999999865421 1233322 122222221
Q ss_pred ---------------HHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030566 59 ---------------LEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..++++.+++.. ........-+..|+||..+++++.. +|+++|||||+...+......+.++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~~~ 467 (529)
T PRK15134 390 RVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALIL--KPSLIILDEPTSSLDKTVQAQILAL 467 (529)
T ss_pred HhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhC--CCCEEEeeCCccccCHHHHHHHHHH
Confidence 112334444431 1111111123348999999999999 9999999999777777777888889
Q ss_pred HHHHHhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 123 VDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 123 l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++++++ |.|| +++||+++++.++||++++++.|..+-+.
T Consensus 468 l~~~~~~~~~tv----i~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 508 (529)
T PRK15134 468 LKSLQQKHQLAY----LFISHDLHVVRALCHQVIVLRQGEVVEQG 508 (529)
T ss_pred HHHHHHhhCCEE----EEEeCCHHHHHHhcCeEEEEECCEEEEEc
Confidence 9998764 8999 99999999999999999999988765443
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-27 Score=185.50 Aligned_cols=158 Identities=16% Similarity=0.165 Sum_probs=111.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEee------cCcc-------cccCCCC-------ccCCcchhcc--
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN------LDPA-------AENFDYP-------VAMDIRELIS-- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g------~~~~-------~~~~~~~-------~~~~~~~~~~-- 58 (175)
+||+++|+|+||||||||+++|+|+.+|++|+|.++| .+.. ...+++. +..+..+++.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~ 114 (257)
T PRK14246 35 NNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP 114 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHH
Confidence 4999999999999999999999999999997777665 3321 1112222 2223222221
Q ss_pred ---------------HHHHHHHhCCCCC----CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 59 ---------------LEDVMEELGLGPN----GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..+.++.+++... .......-+..++++..+++++.. +|++++||||....+....+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~--~P~llllDEPt~~LD~~~~~~l 192 (257)
T PRK14246 115 LKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALAL--KPKVLLMDEPTSMIDIVNSQAI 192 (257)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCCccCCHHHHHHH
Confidence 1122333444211 011111123348899999999999 9999999999666666677788
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
.+++.++++ +.|| +++||+.+++.++|++++.+..+..+..
T Consensus 193 ~~~l~~~~~-~~ti----ilvsh~~~~~~~~~d~v~~l~~g~i~~~ 233 (257)
T PRK14246 193 EKLITELKN-EIAI----VIVSHNPQQVARVADYVAFLYNGELVEW 233 (257)
T ss_pred HHHHHHHhc-CcEE----EEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 889988864 6899 9999999999999999999988876544
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-27 Score=224.59 Aligned_cols=160 Identities=14% Similarity=0.050 Sum_probs=122.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------ccCCCC-------ccCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYP-------VAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~-------~~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.+++. +.+++.+++.
T Consensus 955 ~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~ 1034 (2272)
T TIGR01257 955 ENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRS 1034 (2272)
T ss_pred CCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCC
Confidence 599999999999999999999999999999999999977531 122222 2334444332
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCC
Q 030566 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
..++++.+++..........-+.+|+||..+++++.. +|++++||||+...+...+..++++|++++ +|+
T Consensus 1035 ~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~--~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~ 1111 (2272)
T TIGR01257 1035 WEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVG--DAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGR 1111 (2272)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCC
Confidence 1234555565433222222223448999999999999 999999999977777777888889999985 589
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|| +++||+++++..++|++++|+.|..+..++
T Consensus 1112 TI----IltTHdmdea~~laDrI~iL~~GkL~~~Gs 1143 (2272)
T TIGR01257 1112 TI----IMSTHHMDEADLLGDRIAIISQGRLYCSGT 1143 (2272)
T ss_pred EE----EEEECCHHHHHHhCCEEEEEECCEEEEecC
Confidence 99 999999999999999999999887665544
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-27 Score=204.47 Aligned_cols=154 Identities=14% Similarity=0.098 Sum_probs=114.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc--ccccCCCCccCCcchhcc-----------HHHHHHHhC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS-----------LEDVMEELG 67 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~--~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 67 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++ ..+ ..+.....+..++.+++. ..++++.++
T Consensus 364 ~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~ 442 (590)
T PRK13409 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQ 442 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCC
Confidence 599999999999999999999999999999999875 111 112222223334443332 234555566
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCCcEEEEEeeeccchhh
Q 030566 68 LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQVCIR 146 (175)
Q Consensus 68 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~ 146 (175)
+..........-+..++||.++++++.. +|++++||||+...+...+..+.++|+++++ +|.|| +++||++++
T Consensus 443 l~~~~~~~~~~LSGGe~QRvaiAraL~~--~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv----iivsHD~~~ 516 (590)
T PRK13409 443 LERLLDKNVKDLSGGELQRVAIAACLSR--DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATA----LVVDHDIYM 516 (590)
T ss_pred CHHHHhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE----EEEeCCHHH
Confidence 5422111111223348999999999999 9999999999777777778888899999865 48999 999999999
Q ss_pred hhcCCCceeEeccch
Q 030566 147 FRTLPPCIVCFCCTH 161 (175)
Q Consensus 147 ~~~~~~~~~~~~~~~ 161 (175)
+..++|+++++....
T Consensus 517 ~~~~aDrvivl~~~~ 531 (590)
T PRK13409 517 IDYISDRLMVFEGEP 531 (590)
T ss_pred HHHhCCEEEEEcCcc
Confidence 999999999998744
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-27 Score=185.86 Aligned_cols=159 Identities=16% Similarity=0.118 Sum_probs=112.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccc-----cceeEEeecCccc---------ccCCCCcc------CCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~-----~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+|+||||||||+++|+|+.+|+ +|+|.++|.++.. ..+++.+. .+..+++..
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~ 111 (261)
T PRK14258 32 QSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYG 111 (261)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCcccHHHHHHHH
Confidence 59999999999999999999999999985 8999998876421 11222221 222222210
Q ss_pred ----------------HHHHHHhCCCCC----CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 60 ----------------EDVMEELGLGPN----GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..+++.+++... .......-+..++++..+++++.. +|++++||||....+......+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~vllLDEP~~~LD~~~~~~l 189 (261)
T PRK14258 112 VKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAV--KPKVLLMDEPCFGLDPIASMKV 189 (261)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHH
Confidence 112222332110 000111123348899999999999 9999999999666667777788
Q ss_pred HHHHHHHHh-CCCcEEEEEeeeccchhhhhcCCCceeEecc-----chhhHH
Q 030566 120 RNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC-----THTVVQ 165 (175)
Q Consensus 120 ~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~-----~~~~~~ 165 (175)
.++++++++ ++.|| +++||+++++.++||++++++. |..+.+
T Consensus 190 ~~~l~~l~~~~~~ti----iivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 190 ESLIQSLRLRSELTM----VIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HHHHHHHHHhCCCEE----EEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 888888864 58999 9999999999999999999997 665544
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-27 Score=186.61 Aligned_cols=151 Identities=17% Similarity=0.189 Sum_probs=109.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-----ccceeEEeecCccc---------ccCCCCc------cCCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDYPV------AMDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~---------~~~~~~~------~~~~~~~~~~- 59 (175)
+||+++|+|+||||||||+|+|+|+++| ++|+|.++|.++.. +.+++.+ ..++.+++..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 112 (261)
T PRK14263 33 KNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFG 112 (261)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccccccHHHHHHHH
Confidence 5999999999999999999999999986 79999999976421 1122221 1233333321
Q ss_pred --------------HHHHHHhCCCCCCc--hhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHH
Q 030566 60 --------------EDVMEELGLGPNGG--LIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN 121 (175)
Q Consensus 60 --------------~~~~~~~~l~~~~~--~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~ 121 (175)
.++++.+++..... .......+ .++++..+++++.. +|++++||||....+....+.+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPtsgLD~~~~~~l~~ 190 (261)
T PRK14263 113 LRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIAT--EPEVLLLDEPCSALDPIATRRVEE 190 (261)
T ss_pred HhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHHH
Confidence 12333344322110 00111223 48899999999999 999999999976666777778888
Q ss_pred HHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEec
Q 030566 122 FVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFC 158 (175)
Q Consensus 122 ~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~ 158 (175)
+++++++ +.|+ +++||+++++.++||++++++
T Consensus 191 ~l~~~~~-~~ti----i~isH~~~~i~~~~d~v~~l~ 222 (261)
T PRK14263 191 LMVELKK-DYTI----ALVTHNMQQAIRVADTTAFFS 222 (261)
T ss_pred HHHHHhc-CCeE----EEEeCCHHHHHHhCCEEEEEe
Confidence 9998854 6888 999999999999999999995
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-27 Score=185.14 Aligned_cols=160 Identities=18% Similarity=0.192 Sum_probs=112.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-----ccceeEEeecCccc--------ccCCCCcc------CCcchhccH--
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA--------ENFDYPVA------MDIRELISL-- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~--------~~~~~~~~------~~~~~~~~~-- 59 (175)
+||+++|+||||||||||+|+|+|+.+| ++|+|.++|.++.. ..++|.+. .++.+++..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~ 107 (249)
T PRK14253 28 ARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGL 107 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcccHHHHHHhHH
Confidence 5999999999999999999999999986 59999999865421 12333321 122222210
Q ss_pred ---------------HHHHHHhCCCCCC--chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHH
Q 030566 60 ---------------EDVMEELGLGPNG--GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120 (175)
Q Consensus 60 ---------------~~~~~~~~l~~~~--~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~ 120 (175)
.+.++.+++.... ........+ .++++..+++++.. +|++++||||....+......+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~ 185 (249)
T PRK14253 108 RAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM--EPDVILMDEPTSALDPIATHKIE 185 (249)
T ss_pred HhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHH
Confidence 0111122221100 000111122 38899999999999 99999999996666667777888
Q ss_pred HHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 121 NFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 121 ~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++++++++ +.|| +++||+++++.++||+++++..|..+.+++
T Consensus 186 ~~l~~~~~-~~ti----i~~sh~~~~~~~~~d~i~~l~~G~i~~~g~ 227 (249)
T PRK14253 186 ELMEELKK-NYTI----VIVTHSMQQARRISDRTAFFLMGELVEHDD 227 (249)
T ss_pred HHHHHHhc-CCeE----EEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 89999865 5899 999999999999999999999887765433
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-27 Score=189.69 Aligned_cols=151 Identities=16% Similarity=0.133 Sum_probs=106.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-----ccceeEEeecCccc---------ccCCCCcc------CCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. ..++|.+. .++.+++..
T Consensus 45 ~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~ 124 (274)
T PRK14265 45 AKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFA 124 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccccHHHHHHhH
Confidence 5999999999999999999999999863 69999999976421 12223321 122222211
Q ss_pred --------------HHHHHHhCCCCCC--chhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHH
Q 030566 60 --------------EDVMEELGLGPNG--GLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN 121 (175)
Q Consensus 60 --------------~~~~~~~~l~~~~--~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~ 121 (175)
...++.+++.... ....... +..++++..+++++.. +|+++|||||....+....+.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lllLDEPt~~LD~~~~~~l~~ 202 (274)
T PRK14265 125 PRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAM--KPDVLLMDEPCSALDPISTRQVEE 202 (274)
T ss_pred HHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHHH
Confidence 0111222221000 0001112 2248899999999999 999999999966666777778888
Q ss_pred HHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEec
Q 030566 122 FVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFC 158 (175)
Q Consensus 122 ~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~ 158 (175)
+|+++++ +.|| +++||+++++.++||++++|.
T Consensus 203 ~L~~~~~-~~ti----ii~sH~~~~~~~~~d~i~~l~ 234 (274)
T PRK14265 203 LCLELKE-QYTI----IMVTHNMQQASRVADWTAFFN 234 (274)
T ss_pred HHHHHhc-CCEE----EEEeCCHHHHHHhCCEEEEEe
Confidence 9998865 6889 999999999999999999996
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-27 Score=202.80 Aligned_cols=159 Identities=16% Similarity=0.130 Sum_probs=111.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC-c--ccccCCCCccCCcchhcc-------------------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENFDYPVAMDIRELIS------------------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~--~~~~~~~~~~~~~~~~~~------------------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.. + ..+.....+.+++.+++.
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 105 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYAL 105 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 599999999999999999999999999999999997632 1 011111111122221110
Q ss_pred -----------------------------HHHHHHHhCCCCCCchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCC
Q 030566 59 -----------------------------LEDVMEELGLGPNGGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCP 107 (175)
Q Consensus 59 -----------------------------~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP 107 (175)
...+++.+++.... .......+ .+++|..+++++.. +|++++||||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~~LSgGq~qrv~lA~aL~~--~p~lLlLDEP 182 (530)
T PRK15064 106 PEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ-HYGLMSEVAPGWKLRVLLAQALFS--NPDILLLDEP 182 (530)
T ss_pred cccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH-hcCchhhcCHHHHHHHHHHHHHhc--CCCEEEEcCC
Confidence 12344555554211 11112334 48999999999999 9999999999
Q ss_pred CcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhh-HHhhhh
Q 030566 108 GQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV-VQRAYS 169 (175)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 169 (175)
+...+..+..++.++|+ +.|.|| +++||+++++.++||+++++..+..+ +.++|.
T Consensus 183 t~~LD~~~~~~l~~~l~---~~~~ti----iivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~ 238 (530)
T PRK15064 183 TNNLDINTIRWLEDVLN---ERNSTM----IIISHDRHFLNSVCTHMADLDYGELRVYPGNYD 238 (530)
T ss_pred CcccCHHHHHHHHHHHH---hCCCeE----EEEeCCHHHHHhhcceEEEEeCCEEEEecCCHH
Confidence 66665665666666664 458899 99999999999999999999988763 455444
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-27 Score=188.95 Aligned_cols=158 Identities=14% Similarity=0.174 Sum_probs=110.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc-----cccceeEEeecCccc---------ccCCCCcc------CCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..+++.+. .++.+++..
T Consensus 64 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~ 143 (285)
T PRK14254 64 ENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYG 143 (285)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCHHHHHHHH
Confidence 599999999999999999999999987 689999999875421 11222221 123222211
Q ss_pred --------------HHHHHHhCCCCCC--chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHH
Q 030566 60 --------------EDVMEELGLGPNG--GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN 121 (175)
Q Consensus 60 --------------~~~~~~~~l~~~~--~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~ 121 (175)
.++++.+++.... ........+ .++||..|+++++. +|+++|||||....+....+.+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~--~p~lLLLDEPts~LD~~~~~~l~~ 221 (285)
T PRK14254 144 LKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAP--DPEVILMDEPASALDPVATSKIED 221 (285)
T ss_pred HHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 1223333432110 011111233 38899999999999 999999999966666677778888
Q ss_pred HHHHHHhCCCcEEEEEeeeccchhhhhcCCCcee-EeccchhhHH
Q 030566 122 FVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIV-CFCCTHTVVQ 165 (175)
Q Consensus 122 ~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~-~~~~~~~~~~ 165 (175)
+|++++++ .|| +++||+++++..++++++ ++..+..+..
T Consensus 222 ~L~~~~~~-~ti----ii~tH~~~~i~~~~dri~v~l~~G~i~~~ 261 (285)
T PRK14254 222 LIEELAEE-YTV----VIVTHNMQQAARISDKTAVFLTGGELVEF 261 (285)
T ss_pred HHHHHhcC-CEE----EEEeCCHHHHHhhcCEEEEEeeCCEEEEe
Confidence 99998764 788 999999999999999864 5677665433
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-27 Score=185.17 Aligned_cols=155 Identities=13% Similarity=0.122 Sum_probs=118.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc-----------ccccCCCCc-------cCCcchhcc------
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----------AAENFDYPV-------AMDIRELIS------ 58 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~-----------~~~~~~~~~-------~~~~~~~~~------ 58 (175)
.+++|.|++|||||||+|+|+|+.+|++|.|.++|... ..+.++|+| .++++.++.
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~ 104 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS 104 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhccc
Confidence 58999999999999999999999999999999998632 334455554 344444432
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CCcE
Q 030566 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNV 133 (175)
Q Consensus 59 ----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~tv 133 (175)
+..+.+.++++.-..+....-+-.++||.++.|++.. +|++|++|||-...+.....++.-++++++++ +..|
T Consensus 105 ~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt--~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPI 182 (352)
T COG4148 105 MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLT--APELLLMDEPLASLDLPRKREILPYLERLRDEINIPI 182 (352)
T ss_pred chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhc--CCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCE
Confidence 3456666666554332222223349999999999999 99999999994444455566777799999765 7888
Q ss_pred EEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 134 CAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 134 li~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+++||.++|+..++|++++|++|.+.
T Consensus 183 ----lYVSHS~~Ev~RLAd~vV~le~GkV~ 208 (352)
T COG4148 183 ----LYVSHSLDEVLRLADRVVVLENGKVK 208 (352)
T ss_pred ----EEEecCHHHHHhhhheEEEecCCeEE
Confidence 99999999999999999999999764
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-27 Score=187.37 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=112.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-----ccceeEEeecCccc--------ccCCCCcc------CCcchhccH--
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA--------ENFDYPVA------MDIRELISL-- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~--------~~~~~~~~------~~~~~~~~~-- 59 (175)
+||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. ..++|.+. .++.+++..
T Consensus 46 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~ 125 (276)
T PRK14271 46 ARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGV 125 (276)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCccHHHHHHHHH
Confidence 5999999999999999999999999985 79999999865421 12223221 233322211
Q ss_pred ---------------HHHHHHhCCCCCC--chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHH
Q 030566 60 ---------------EDVMEELGLGPNG--GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120 (175)
Q Consensus 60 ---------------~~~~~~~~l~~~~--~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~ 120 (175)
.+.++.+++.... ........+ .+++|..|++++.. +|+++|||||....+......+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~--~p~lllLDEPt~~LD~~~~~~l~ 203 (276)
T PRK14271 126 RAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAV--NPEVLLLDEPTSALDPTTTEKIE 203 (276)
T ss_pred HhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH
Confidence 1122333332110 000111223 48899999999999 99999999996666666677788
Q ss_pred HHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 121 NFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 121 ~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
++|+++++ +.|| +++||+++++.+++|+++++..+..+.+
T Consensus 204 ~~L~~~~~-~~ti----iivsH~~~~~~~~~dri~~l~~G~i~~~ 243 (276)
T PRK14271 204 EFIRSLAD-RLTV----IIVTHNLAQAARISDRAALFFDGRLVEE 243 (276)
T ss_pred HHHHHHhc-CCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 88988865 4799 9999999999999999999998876544
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-26 Score=183.77 Aligned_cols=155 Identities=14% Similarity=0.029 Sum_probs=109.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCCC---
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGP--- 70 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~--- 70 (175)
+||+++|+|+||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+ +....+. .++.+++....
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~--q~~~l~~-~tv~~nl~~~~~~~ 122 (257)
T cd03288 46 PGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIIL--QDPILFS-GSIRFNLDPECKCT 122 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEEC--CCCcccc-cHHHHhcCcCCCCC
Confidence 499999999999999999999999999999999999876421 1222222 1111111 12222221110
Q ss_pred --------------------------CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHH
Q 030566 71 --------------------------NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 71 --------------------------~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
........-+..++|+..++++++. +|++++||||....+....+.+.++++
T Consensus 123 ~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEPt~gLD~~~~~~l~~~l~ 200 (257)
T cd03288 123 DDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR--KSSILIMDEATASIDMATENILQKVVM 200 (257)
T ss_pred HHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 0000000112348899999999999 999999999966655666677777888
Q ss_pred HHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 125 HLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 125 ~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++ ++.|+ +++||+++++.. |++++++..+..+..+
T Consensus 201 ~~~-~~~ti----ii~sh~~~~~~~-~dri~~l~~G~i~~~g 236 (257)
T cd03288 201 TAF-ADRTV----VTIAHRVSTILD-ADLVLVLSRGILVECD 236 (257)
T ss_pred Hhc-CCCEE----EEEecChHHHHh-CCEEEEEECCEEEEeC
Confidence 764 47899 999999999986 9999999988776543
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=184.81 Aligned_cols=151 Identities=18% Similarity=0.210 Sum_probs=107.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-----ccceeEEeecCccc---------ccCCCCc------cCCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDYPV------AMDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~---------~~~~~~~------~~~~~~~~~~- 59 (175)
+||+++|+|+||||||||+|+|+|+.+| ++|+|.++|.++.. ..+++.+ ..++.+++..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~ 111 (259)
T PRK14260 32 RNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYG 111 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCCccHHHHHHHH
Confidence 5999999999999999999999999885 48999999876421 1122222 1233333211
Q ss_pred ----------------HHHHHHhCCCCC--CchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 60 ----------------EDVMEELGLGPN--GGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~--~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.++++.+++... .........+ .++++..++++++. +|++++||||....+......+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l 189 (259)
T PRK14260 112 VRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAI--KPKVLLMDEPCSALDPIATMKV 189 (259)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHH
Confidence 122223333210 0011111223 38899999999999 9999999999666666677788
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEec
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFC 158 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~ 158 (175)
.++++++++ +.|| +++||+++++.++||++++++
T Consensus 190 ~~~l~~~~~-~~ti----ii~tH~~~~i~~~~d~i~~l~ 223 (259)
T PRK14260 190 EELIHSLRS-ELTI----AIVTHNMQQATRVSDFTAFFS 223 (259)
T ss_pred HHHHHHHhc-CCEE----EEEeCCHHHHHHhcCeEEEEe
Confidence 889988865 5899 999999999999999999997
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-26 Score=184.35 Aligned_cols=160 Identities=14% Similarity=0.148 Sum_probs=111.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc--c---ccceeEEeecCccc---------ccCCCCcc------CCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~--~---~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+|+|+|+.+ | ++|+|.++|.++.. ..+++.+. .++.+++..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~ 110 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYG 110 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcccHHHHHHhh
Confidence 599999999999999999999999975 3 48999999876421 11222221 122221110
Q ss_pred ----------------HHHHHHhCCCCCC--chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 60 ----------------EDVMEELGLGPNG--GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~~--~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.++++.+++.... ........+ .++++..+++++.. +|++++||||....+....+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEP~~gLD~~~~~~l 188 (253)
T PRK14261 111 PRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAV--NPEVILMDEPCSALDPIATAKI 188 (253)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 1112222221100 001111223 37899999999999 9999999999666666677788
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.++++++++ +.|| +++||+++++.+++|+++++..|..+..+.
T Consensus 189 ~~~l~~~~~-~~tv----ii~sh~~~~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14261 189 EDLIEDLKK-EYTV----IIVTHNMQQAARVSDYTGFMYLGKLIEFDK 231 (253)
T ss_pred HHHHHHHhh-CceE----EEEEcCHHHHHhhCCEEEEEECCEEEEcCC
Confidence 889988865 5899 999999999999999999999887765443
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=183.94 Aligned_cols=160 Identities=14% Similarity=0.178 Sum_probs=111.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc-----cccceeEEeecCccc---------ccCCCCcc------CCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+||||||||||+++|+|+.+ |++|+|.++|.++.. ..++|.+. .++.+++..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~ 107 (250)
T PRK14266 28 KNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYG 107 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcchHHHHHHhH
Confidence 599999999999999999999999864 489999999976421 12333321 122221110
Q ss_pred ----------------HHHHHHhCCCCCC--chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 60 ----------------EDVMEELGLGPNG--GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~~--~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.+.++.+++.... ........+ .++++..+++++.. +|++++||||....+......+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEP~~gLD~~~~~~l 185 (250)
T PRK14266 108 LRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAV--SPEVILMDEPCSALDPISTTKI 185 (250)
T ss_pred HhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCCccCCHHHHHHH
Confidence 1112222221100 000111222 38899999999999 9999999999666666677788
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.++++++++ +.|| +++||+++++...+++++++..|..+.+++
T Consensus 186 ~~~l~~~~~-~~ti----ii~sh~~~~~~~~~~~i~~l~~G~i~~~g~ 228 (250)
T PRK14266 186 EDLIHKLKE-DYTI----VIVTHNMQQATRVSKYTSFFLNGEIIESGL 228 (250)
T ss_pred HHHHHHHhc-CCeE----EEEECCHHHHHhhcCEEEEEECCeEEEeCC
Confidence 889998854 7899 999999999999999999888776654433
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=183.08 Aligned_cols=158 Identities=16% Similarity=0.196 Sum_probs=110.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc--c---ccceeEEeecCccc---------ccCCCCcc------CCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDYPVA------MDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~--~---~~G~I~i~g~~~~~---------~~~~~~~~------~~~~~~~~~- 59 (175)
+||+++|+|+||||||||+++|+|+.+ | ++|+|.++|.++.. ..+++.+. .++.+++..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~ 109 (252)
T PRK14255 30 QNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYG 109 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCCCcHHHHHHHH
Confidence 599999999999999999999999875 4 58999999876421 11222221 122222211
Q ss_pred ----------------HHHHHHhCCCCCC--chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 60 ----------------EDVMEELGLGPNG--GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~~--~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
.+.++.+++.... ........+ .+++|..++++++. +|++++||||....+......+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l 187 (252)
T PRK14255 110 LRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAV--KPDVILLDEPTSALDPISSTQI 187 (252)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHH
Confidence 0111222221100 001111223 48899999999999 9999999999666666677788
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
.++|+++++ +.|+ +++||+++++.++||++++++.+..+..
T Consensus 188 ~~~l~~~~~-~~ti----i~vsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 188 ENMLLELRD-QYTI----ILVTHSMHQASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred HHHHHHHHh-CCEE----EEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 889998865 4789 9999999999999999999998876543
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=201.20 Aligned_cols=161 Identities=17% Similarity=0.049 Sum_probs=113.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC---cccccCCCCccCCcchhccH------------------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD---PAAENFDYPVAMDIRELISL------------------ 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~---~~~~~~~~~~~~~~~~~~~~------------------ 59 (175)
+|++++|+||||||||||+|+|+|+++|++|+|.+++.. ...+...+.+.+++.+++..
T Consensus 32 ~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 111 (556)
T PRK11819 32 PGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAA 111 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999986421 11122222223343333221
Q ss_pred ----------------------------------HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEe
Q 030566 60 ----------------------------------EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFD 105 (175)
Q Consensus 60 ----------------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLD 105 (175)
.++++.+++.. .......-+.+|++|..+++++.. +|+++|||
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~LSgGqkqrv~la~al~~--~p~vlLLD 188 (556)
T PRK11819 112 YAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAKVTKLSGGERRRVALCRLLLE--KPDMLLLD 188 (556)
T ss_pred hccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCchhhcCHHHHHHHHHHHHHhC--CCCEEEEc
Confidence 11222333321 111111123348999999999999 99999999
Q ss_pred CCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhh-HHhhhhcc
Q 030566 106 CPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV-VQRAYSFL 171 (175)
Q Consensus 106 EP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 171 (175)
||+...+..+..++.++++++ +.|| +++||+++++..+|++++++..+..+ ++++|.-|
T Consensus 189 EPt~~LD~~~~~~l~~~L~~~---~~tv----iiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 189 EPTNHLDAESVAWLEQFLHDY---PGTV----VAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred CCCCcCChHHHHHHHHHHHhC---CCeE----EEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 996666666666777777765 3488 99999999999999999999988765 56665543
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=201.56 Aligned_cols=159 Identities=15% Similarity=0.131 Sum_probs=112.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc---ccccC--CCCccCCcchhcc-----------HHHHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAENF--DYPVAMDIRELIS-----------LEDVME 64 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~---~~~~~--~~~~~~~~~~~~~-----------~~~~~~ 64 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|... ..+.. .+....++.+++. ..++++
T Consensus 344 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~ 423 (530)
T PRK15064 344 AGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLG 423 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHH
Confidence 5999999999999999999999999999999999986421 11111 1222233333321 234555
Q ss_pred HhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccc
Q 030566 65 ELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQV 143 (175)
Q Consensus 65 ~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~ 143 (175)
.+++.. ........-+..+++|..+++++.. +|++++||||+...+......+.++++++ +.|| +++||+
T Consensus 424 ~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tv----i~vsHd 494 (530)
T PRK15064 424 RLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQ--KPNVLVMDEPTNHMDMESIESLNMALEKY---EGTL----IFVSHD 494 (530)
T ss_pred HcCCChhHhcCcccccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEE----EEEeCC
Confidence 666531 1111222223348999999999999 99999999996665566566666666665 4588 999999
Q ss_pred hhhhhcCCCceeEeccchhh-HHhhh
Q 030566 144 CIRFRTLPPCIVCFCCTHTV-VQRAY 168 (175)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~-~~~~~ 168 (175)
.+++..+|++++++..+..+ ...++
T Consensus 495 ~~~~~~~~d~i~~l~~g~i~~~~g~~ 520 (530)
T PRK15064 495 REFVSSLATRIIEITPDGVVDFSGTY 520 (530)
T ss_pred HHHHHHhCCEEEEEECCeEEEcCCCH
Confidence 99999999999999988765 44443
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-26 Score=204.11 Aligned_cols=163 Identities=15% Similarity=0.077 Sum_probs=113.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc---ccc-cC-------CCCcc-------CCc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAE-NF-------DYPVA-------MDI--------- 53 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~---~~~-~~-------~~~~~-------~~~--------- 53 (175)
+|+++||+||||||||||+|+|+|+++|++|+|.++|... ..+ .. .+.+. ++.
T Consensus 26 ~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~ 105 (638)
T PRK10636 26 PGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERN 105 (638)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccC
Confidence 5999999999999999999999999999999999977431 001 00 00000 000
Q ss_pred --------c---hh-------ccHHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccc
Q 030566 54 --------R---EL-------ISLEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFT 114 (175)
Q Consensus 54 --------~---~~-------~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~ 114 (175)
. +. -....+++.+++.. ........-+.++++|..|+++++. +|++||||||+...+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~--~P~lLLLDEPtn~LD~~ 183 (638)
T PRK10636 106 DGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALIC--RSDLLLLDEPTNHLDLD 183 (638)
T ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHcc--CCCEEEEcCCCCcCCHH
Confidence 0 00 01223455555542 1111222223348999999999999 99999999996666666
Q ss_pred cchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhh-HHhhhhccc
Q 030566 115 HVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV-VQRAYSFLF 172 (175)
Q Consensus 115 ~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 172 (175)
...++.++|+++ +.|| +++||+.+++..+|++++.+..+..+ +.++|..|.
T Consensus 184 ~~~~L~~~L~~~---~~tv----iivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 184 AVIWLEKWLKSY---QGTL----ILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred HHHHHHHHHHhC---CCeE----EEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHH
Confidence 666777776654 5688 99999999999999999999988764 566666553
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-26 Score=197.82 Aligned_cols=159 Identities=17% Similarity=0.172 Sum_probs=114.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-ccceeEEeecCccc--------ccCCCCcc---------CCcchhc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAA--------ENFDYPVA---------MDIRELI----- 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-~~G~I~i~g~~~~~--------~~~~~~~~---------~~~~~~~----- 57 (175)
+||+++|+||||||||||+|+|+|+.++ ++|+|.++|.+... ..+++.+. .+..+++
T Consensus 285 ~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~ 364 (490)
T PRK10938 285 PGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFF 364 (490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccc
Confidence 5999999999999999999999999876 79999999865311 12232221 0111110
Q ss_pred ---------------cHHHHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHH
Q 030566 58 ---------------SLEDVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN 121 (175)
Q Consensus 58 ---------------~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~ 121 (175)
...++++.+++.. ........-+..++||..+++++.. +|++++||||+...+...+..+.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~~ 442 (490)
T PRK10938 365 DSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVK--HPTLLILDEPLQGLDPLNRQLVRR 442 (490)
T ss_pred cccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHHH
Confidence 0124455566543 2222222223348999999999999 999999999977777777788888
Q ss_pred HHHHHHhCCC-cEEEEEeeeccchhhhhc-CCCceeEeccchhhHH
Q 030566 122 FVDHLKSRNF-NVCAVYLLDSQVCIRFRT-LPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 122 ~l~~l~~~g~-tvli~~l~~sH~~~~~~~-~~~~~~~~~~~~~~~~ 165 (175)
+|+++++++. || +++||+++++.+ ++++++++..|..+..
T Consensus 443 ~L~~l~~~~~~tv----iivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 443 FVDVLISEGETQL----LFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHhcCCcEE----EEEecchhhhhhhhheeEEEecCCceEEe
Confidence 9999977654 68 999999999988 5899999998875443
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=204.80 Aligned_cols=161 Identities=19% Similarity=0.165 Sum_probs=120.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccc--cceeEEeecCccc---ccCCCC-------ccCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAA---ENFDYP-------VAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~--~G~I~i~g~~~~~---~~~~~~-------~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+++|+|..+|+ +|+|.++|.+... +.+++. +.+++++++.
T Consensus 93 ~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~ 172 (659)
T PLN03211 93 PGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS 172 (659)
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCC
Confidence 59999999999999999999999999885 8999999976421 122222 2234443332
Q ss_pred ---------HHHHHHHhCCCCCCch-----hhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHH
Q 030566 59 ---------LEDVMEELGLGPNGGL-----IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..++++.+++...... ....-+.+|++|..+++++.. +|++++||||+...+......+.++++
T Consensus 173 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~--~P~iLlLDEPtsgLD~~~~~~l~~~L~ 250 (659)
T PLN03211 173 LTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI--NPSLLILDEPTSGLDATAAYRLVLTLG 250 (659)
T ss_pred CCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHh--CCCEEEEeCCCCCcCHHHHHHHHHHHH
Confidence 1234444555332110 011123348999999999999 999999999966666777778888999
Q ss_pred HHHhCCCcEEEEEeeeccchh-hhhcCCCceeEeccchhhHHhh
Q 030566 125 HLKSRNFNVCAVYLLDSQVCI-RFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 125 ~l~~~g~tvli~~l~~sH~~~-~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++++|+|| +++||+++ ++.+.+|+++++..|+.+++++
T Consensus 251 ~l~~~g~Tv----I~~sH~~~~~i~~~~D~iilL~~G~iv~~G~ 290 (659)
T PLN03211 251 SLAQKGKTI----VTSMHQPSSRVYQMFDSVLVLSEGRCLFFGK 290 (659)
T ss_pred HHHhCCCEE----EEEecCCCHHHHHhhceEEEecCCcEEEECC
Confidence 998789999 99999998 5899999999999998887654
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=186.15 Aligned_cols=166 Identities=16% Similarity=0.158 Sum_probs=120.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc-c----ccceeEEeecCccc-----------ccCCC---------CccCCcch
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-T----VRRTMHIVNLDPAA-----------ENFDY---------PVAMDIRE 55 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-~----~~G~I~i~g~~~~~-----------~~~~~---------~~~~~~~~ 55 (175)
+||++||+|+|||||||+.++|.|+++ | .+|+|.++|.++.. ..+++ .|.+++.+
T Consensus 30 ~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~ 109 (316)
T COG0444 30 KGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGD 109 (316)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHH
Confidence 599999999999999999999999997 3 57999999986421 12222 22222222
Q ss_pred hcc------------------HHHHHHHhCCCCCCc-hhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccc
Q 030566 56 LIS------------------LEDVMEELGLGPNGG-LIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFT 114 (175)
Q Consensus 56 ~~~------------------~~~~~~~~~l~~~~~-~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~ 114 (175)
++. ..+.++.+++..... ......++| ++||..+|.+++. +|++||.|||+...+..
T Consensus 110 Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~--~P~LlIADEPTTALDvt 187 (316)
T COG0444 110 QIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALAL--NPKLLIADEPTTALDVT 187 (316)
T ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhC--CCCEEEeCCCcchhhHH
Confidence 211 123445555554311 111122344 8999999999999 99999999994444444
Q ss_pred cchHHHHHHHHHHh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhhhccc
Q 030566 115 HVPVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYSFLF 172 (175)
Q Consensus 115 ~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (175)
.+..+.++|+++++ .|.|+ +++|||+..+.++||++.+|.+|..|=+....-.|
T Consensus 188 ~QaqIl~Ll~~l~~e~~~ai----ilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 188 VQAQILDLLKELQREKGTAL----ILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred HHHHHHHHHHHHHHhcCCEE----EEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHh
Confidence 45667779999875 69999 99999999999999999999999998777765444
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-26 Score=196.72 Aligned_cols=162 Identities=18% Similarity=0.130 Sum_probs=122.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccc----cceeEEeecCccc-----------ccCC---------CCccCCcchh
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV----RRTMHIVNLDPAA-----------ENFD---------YPVAMDIREL 56 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~----~G~I~i~g~~~~~-----------~~~~---------~~~~~~~~~~ 56 (175)
+||++||+|++||||||+.++|.|++++. +|+|.++|.+... ..++ +.|.+++.++
T Consensus 34 ~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Q 113 (539)
T COG1123 34 PGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQ 113 (539)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHH
Confidence 59999999999999999999999999987 8999999976321 1222 2332333333
Q ss_pred cc-----------------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccch
Q 030566 57 IS-----------------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVP 117 (175)
Q Consensus 57 ~~-----------------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~ 117 (175)
+. ..++++.+++...........++| |+||..+|++++. +|++||+|||+...+..-..
T Consensus 114 i~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~--~P~LLIaDEPTTaLDvt~q~ 191 (539)
T COG1123 114 IREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALAL--KPKLLIADEPTTALDVTTQA 191 (539)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhC--CCCEEEECCCccccCHHHHH
Confidence 22 245677777776543311223344 9999999999999 99999999994444444455
Q ss_pred HHHHHHHHHH-hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 118 VLRNFVDHLK-SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 118 ~~~~~l~~l~-~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
.+.++|++++ +.|.++ +++||+++.++++||++++|.+|..|-.+..
T Consensus 192 qIL~llk~l~~e~g~a~----l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~ 239 (539)
T COG1123 192 QILDLLKDLQRELGMAV----LFITHDLGVVAELADRVVVMYKGEIVETGPT 239 (539)
T ss_pred HHHHHHHHHHHHcCcEE----EEEcCCHHHHHHhcCeEEEEECCEEEEecCH
Confidence 6677999986 569999 9999999999999999999999988765543
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-26 Score=168.44 Aligned_cols=155 Identities=16% Similarity=0.117 Sum_probs=114.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-----------cccCCCCc-------cCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDYPV-------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----------~~~~~~~~-------~~~~~~~~~---- 58 (175)
.||.++|+||+|||||||+-+++|+..|++|+|++.|++.. ..++++++ .++..+++.
T Consensus 35 ~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPle 114 (228)
T COG4181 35 RGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLE 114 (228)
T ss_pred CCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhh
Confidence 48999999999999999999999999999999999998642 23344433 333333322
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
....++.++++.+.......-+-.++||.+++|++.. .|++|+.|||+...+...-+.+..++..+
T Consensus 115 L~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~--~P~vLfADEPTGNLD~~Tg~~iaDLlF~l 192 (228)
T COG4181 115 LRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAG--RPDVLFADEPTGNLDRATGDKIADLLFAL 192 (228)
T ss_pred hcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcC--CCCEEeccCCCCCcchhHHHHHHHHHHHH
Confidence 2345566666655533322223348899999999999 99999999996655555555666688777
Q ss_pred H-hCCCcEEEEEeeeccchhhhhcCCCceeEeccchh
Q 030566 127 K-SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHT 162 (175)
Q Consensus 127 ~-~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~ 162 (175)
+ +.|.|. +++|||... +..|+|.+-+.+|+-
T Consensus 193 nre~G~Tl----VlVTHD~~L-A~Rc~R~~r~~~G~l 224 (228)
T COG4181 193 NRERGTTL----VLVTHDPQL-AARCDRQLRLRSGRL 224 (228)
T ss_pred hhhcCceE----EEEeCCHHH-HHhhhheeeeeccee
Confidence 4 679999 999999764 577898888887764
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=204.05 Aligned_cols=160 Identities=13% Similarity=-0.001 Sum_probs=113.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeec-C----cccccCCCCccCCcchhc----------cHHHHHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-D----PAAENFDYPVAMDIRELI----------SLEDVMEE 65 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~-~----~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 65 (175)
+|+++||+||||||||||+|+|+|+.+|++|+|.+++. . ++.......+..++.+.+ ...++++.
T Consensus 337 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 416 (638)
T PRK10636 337 PGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGG 416 (638)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHH
Confidence 49999999999999999999999999999999998631 1 111100111111222111 12345666
Q ss_pred hCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccch
Q 030566 66 LGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVC 144 (175)
Q Consensus 66 ~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~ 144 (175)
+++... .......-+.++++|..|++++.. +|++||||||+...+......+.++|.++ . .|| +++||+.
T Consensus 417 ~~l~~~~~~~~~~~LSgGekqRl~La~~l~~--~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-gtv----i~vSHd~ 487 (638)
T PRK10636 417 FGFQGDKVTEETRRFSGGEKARLVLALIVWQ--RPNLLLLDEPTNHLDLDMRQALTEALIDF--E-GAL----VVVSHDR 487 (638)
T ss_pred cCCChhHhcCchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CeE----EEEeCCH
Confidence 666421 112222223348999999999999 99999999997776676677777778776 3 489 9999999
Q ss_pred hhhhcCCCceeEeccchhh-HHhhhh
Q 030566 145 IRFRTLPPCIVCFCCTHTV-VQRAYS 169 (175)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~-~~~~~~ 169 (175)
+++..+|++++++..|..+ +.++|.
T Consensus 488 ~~~~~~~d~i~~l~~G~i~~~~g~~~ 513 (638)
T PRK10636 488 HLLRSTTDDLYLVHDGKVEPFDGDLE 513 (638)
T ss_pred HHHHHhCCEEEEEECCEEEEcCCCHH
Confidence 9999999999999988765 444443
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-26 Score=183.18 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=109.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-----ccceeEEeecCcc-----------cccCCCCccC------Ccchhcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA-----------AENFDYPVAM------DIRELIS 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~-----------~~~~~~~~~~------~~~~~~~ 58 (175)
+||+++|+|+||||||||+++|+|+.+| ++|+|.++|.+.. ...+++.+.. ++.+++.
T Consensus 41 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~ 120 (265)
T PRK14252 41 EKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVA 120 (265)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcchHHHHHH
Confidence 5999999999999999999999999875 7999999876431 1122333211 2222221
Q ss_pred H-----------------HHHHHHhCCCCC----CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccch
Q 030566 59 L-----------------EDVMEELGLGPN----GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVP 117 (175)
Q Consensus 59 ~-----------------~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~ 117 (175)
. ...++.+++... .......-+..++++..+++++.. +|++++||||....+....+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~gLD~~~~~ 198 (265)
T PRK14252 121 YGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALAT--DPEILLFDEPTSALDPIATA 198 (265)
T ss_pred hHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHH
Confidence 0 011112222100 000001112238899999999999 99999999996666666777
Q ss_pred HHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 118 VLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 118 ~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
.+.++++++++ +.|| +++||+++++.++||+++++..+..+.+
T Consensus 199 ~l~~~l~~l~~-~~ti----iivth~~~~~~~~~d~i~~l~~G~i~~~ 241 (265)
T PRK14252 199 SIEELISDLKN-KVTI----LIVTHNMQQAARVSDYTAYMYMGELIEF 241 (265)
T ss_pred HHHHHHHHHHh-CCEE----EEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 88889998865 6889 9999999999999999999988776544
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-26 Score=187.84 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=108.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc-----cccceeEEeecCccc---------ccCCCCccC------CcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPVAM------DIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~~~------~~~~~~~~- 59 (175)
+||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. ..++|.+.. ++.+++..
T Consensus 70 ~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~ 149 (305)
T PRK14264 70 EKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYG 149 (305)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccccHHHHHHhH
Confidence 599999999999999999999999986 689999999876421 123333311 11111110
Q ss_pred ----------------------------HHHHHHhCCCCCC--chhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCC
Q 030566 60 ----------------------------EDVMEELGLGPNG--GLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCP 107 (175)
Q Consensus 60 ----------------------------~~~~~~~~l~~~~--~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP 107 (175)
.++++.+++.... ........+ .+++|..+++++.. +|+++|||||
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lLLLDEP 227 (305)
T PRK14264 150 PRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAV--DPEVILMDEP 227 (305)
T ss_pred HhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhc--CCCEEEEeCC
Confidence 1111112221000 000011122 37899999999999 9999999999
Q ss_pred CcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCce-eEeccchhhHH
Q 030566 108 GQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCI-VCFCCTHTVVQ 165 (175)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~-~~~~~~~~~~~ 165 (175)
....+......+.++|+++++ +.|| +++||+++++..+|+++ +++..+..+.+
T Consensus 228 tsgLD~~~~~~l~~~L~~~~~-~~ti----iivtH~~~~i~~~~d~i~~~l~~G~i~~~ 281 (305)
T PRK14264 228 ASALDPIATSKIEDLIEELAE-EYTV----VVVTHNMQQAARISDQTAVFLTGGELVEY 281 (305)
T ss_pred cccCCHHHHHHHHHHHHHHhc-CCEE----EEEEcCHHHHHHhcCEEEEEecCCEEEEe
Confidence 666666677788889999876 4788 99999999999999986 56777766544
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-26 Score=175.23 Aligned_cols=156 Identities=14% Similarity=0.156 Sum_probs=105.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccc-----cceeEEeecCcccc---------cCCCCc------cCCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAAE---------NFDYPV------AMDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~-----~G~I~i~g~~~~~~---------~~~~~~------~~~~~~~~~~- 59 (175)
+++++++|||+|||||||+|++..+.... +|+|.++|+++... .++.++ .++.++++..
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG 111 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYG 111 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHh
Confidence 47899999999999999999999987754 49999999886442 223332 2233343321
Q ss_pred -----------HH----HHHHhCCCCCCch--hhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHH
Q 030566 60 -----------ED----VMEELGLGPNGGL--IYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120 (175)
Q Consensus 60 -----------~~----~~~~~~l~~~~~~--~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~ 120 (175)
.+ .++.-.+..+... ..... +..|+||..+||+++- +|++|+||||+...+.-....+.
T Consensus 112 ~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv--~PeVlLmDEPtSALDPIsT~kIE 189 (253)
T COG1117 112 LRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAV--KPEVLLMDEPTSALDPISTLKIE 189 (253)
T ss_pred HHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhc--CCcEEEecCcccccCchhHHHHH
Confidence 00 0111111111000 00111 2238899999999999 99999999994444444455677
Q ss_pred HHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 121 NFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 121 ~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+++.+++ +.-|| +++||+|..+.+.+|..+++..|.-|
T Consensus 190 eLi~eLk-~~yTI----viVTHnmqQAaRvSD~taFf~~G~Lv 227 (253)
T COG1117 190 ELITELK-KKYTI----VIVTHNMQQAARVSDYTAFFYLGELV 227 (253)
T ss_pred HHHHHHH-hccEE----EEEeCCHHHHHHHhHhhhhhcccEEE
Confidence 8899997 46899 99999999999999977776665443
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-26 Score=187.88 Aligned_cols=161 Identities=13% Similarity=0.146 Sum_probs=114.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc-----cccceeEEeecCccc---------ccCCCCc------cCCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDYPV------AMDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-----~~~G~I~i~g~~~~~---------~~~~~~~------~~~~~~~~~~- 59 (175)
+||++||+||||||||||+++|+|+.+ |++|+|.++|.++.. ..+++.+ ..+.++++..
T Consensus 107 ~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~ 186 (329)
T PRK14257 107 RNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYG 186 (329)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhH
Confidence 599999999999999999999999986 579999999987531 1222222 1233333321
Q ss_pred ----------------HHHHHHhCCCCCC----chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 60 ----------------EDVMEELGLGPNG----GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 60 ----------------~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
..+++..++.... ......-+.+++||..|+|++.. +|++++||||....+......+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~--~p~IlLLDEPts~LD~~~~~~i 264 (329)
T PRK14257 187 PRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIAL--EPEVLLMDEPTSALDPIATAKI 264 (329)
T ss_pred HHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHH
Confidence 1112233321110 00011112348999999999999 9999999999555556666678
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
.+.++++.+ +.|+ +++||+++.+.++||++++|..|..+-+++.
T Consensus 265 ~~~i~~l~~-~~Ti----i~iTH~l~~i~~~~Driivl~~G~i~e~g~~ 308 (329)
T PRK14257 265 EELILELKK-KYSI----IIVTHSMAQAQRISDETVFFYQGWIEEAGET 308 (329)
T ss_pred HHHHHHHhc-CCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 888888865 6899 9999999999999999999998877655543
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-26 Score=203.20 Aligned_cols=159 Identities=18% Similarity=0.127 Sum_probs=111.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc-------HH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS-------LE 60 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~-------~~ 60 (175)
.||.+||+|+||||||||+|+++|+++|++|+|.+||.|... +.+++++ .-+.++++. .+
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e 577 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDE 577 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHH
Confidence 399999999999999999999999999999999999998532 3344333 123344433 11
Q ss_pred H------------HHHHhCCCCCCchhh--hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 61 D------------VMEELGLGPNGGLIY--CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 61 ~------------~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
+ ...++.++.+-.... ..-+.+||||.+|||++.+ +|++|+||||+...+......+.+-|.++
T Consensus 578 ~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~--~P~ILlLDEaTSaLD~~sE~~I~~~L~~~ 655 (709)
T COG2274 578 EIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS--KPKILLLDEATSALDPETEAIILQNLLQI 655 (709)
T ss_pred HHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc--CCCEEEEeCcccccCHhHHHHHHHHHHHH
Confidence 1 222221111110000 0113349999999999999 99999999994444444444555566665
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
. +|+|+ ++++|++..+ +.+|++++|+.|..+-+++
T Consensus 656 ~-~~~T~----I~IaHRl~ti-~~adrIiVl~~Gkiv~~gs 690 (709)
T COG2274 656 L-QGRTV----IIIAHRLSTI-RSADRIIVLDQGKIVEQGS 690 (709)
T ss_pred h-cCCeE----EEEEccchHh-hhccEEEEccCCceeccCC
Confidence 3 47999 9999998866 7889999999999887765
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-26 Score=198.02 Aligned_cols=159 Identities=16% Similarity=0.043 Sum_probs=109.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC-c--ccccCCCCccCCcchhccH------------------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENFDYPVAMDIRELISL------------------ 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~--~~~~~~~~~~~~~~~~~~~------------------ 59 (175)
+|++++|+||||||||||+|+|+|+.+|++|+|.+++.. + ..+.....+.+++.+++..
T Consensus 30 ~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~ 109 (552)
T TIGR03719 30 PGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAK 109 (552)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999986421 1 1122222222343333221
Q ss_pred ----------------------------------HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEe
Q 030566 60 ----------------------------------EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFD 105 (175)
Q Consensus 60 ----------------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLD 105 (175)
..+++.+++.. .......-+.++++|..++++++. +|+++|||
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkqrv~la~al~~--~p~lLLLD 186 (552)
T TIGR03719 110 FAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDADVTKLSGGERRRVALCRLLLS--KPDMLLLD 186 (552)
T ss_pred hccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCchhhcCHHHHHHHHHHHHHhc--CCCEEEEc
Confidence 01122223321 111111223348999999999999 99999999
Q ss_pred CCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhh-HHhhhh
Q 030566 106 CPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV-VQRAYS 169 (175)
Q Consensus 106 EP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 169 (175)
||+...+......+.++|+++ +.|| +++||+++.+..+||+++++..+..+ ++++|.
T Consensus 187 EPt~~LD~~~~~~l~~~L~~~---~~tv----IiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~ 244 (552)
T TIGR03719 187 EPTNHLDAESVAWLEQHLQEY---PGTV----VAVTHDRYFLDNVAGWILELDRGRGIPWEGNYS 244 (552)
T ss_pred CCCCCCChHHHHHHHHHHHhC---CCeE----EEEeCCHHHHHhhcCeEEEEECCEEEEecCCHH
Confidence 996666666666666676654 3588 99999999999999999999988754 455544
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-26 Score=183.21 Aligned_cols=155 Identities=17% Similarity=0.115 Sum_probs=108.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCcc------CCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA------MDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~------~~~~~~~~--------- 58 (175)
+||+++|+|+||||||||+++|+|+++ ++|+|.++|.++.. ..+++.+. .++.+++.
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~ 107 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEE 107 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhccCCCHHH
Confidence 599999999999999999999999998 79999999976421 12333331 12222221
Q ss_pred HHHHHHHhCCCCCCchhhh-----------HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 LEDVMEELGLGPNGGLIYC-----------MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
....++.+++......... .-+.+++|+..++|+++. +|++++||||....+......+.+.++++.
T Consensus 108 ~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~--~p~illlDEpts~LD~~~~~~l~~~l~~~~ 185 (275)
T cd03289 108 IWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLS--KAKILLLDEPSAHLDPITYQVIRKTLKQAF 185 (275)
T ss_pred HHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence 1222333333211100000 023348899999999999 999999999966655666667777888764
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
+++|| +++||+++.+.. ||++++|+.+..+.
T Consensus 186 -~~~ti----i~isH~~~~i~~-~dri~vl~~G~i~~ 216 (275)
T cd03289 186 -ADCTV----ILSEHRIEAMLE-CQRFLVIEENKVRQ 216 (275)
T ss_pred -CCCEE----EEEECCHHHHHh-CCEEEEecCCeEee
Confidence 47899 999999998875 99999998776654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.3e-26 Score=200.53 Aligned_cols=160 Identities=16% Similarity=0.100 Sum_probs=112.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc-----cc---ccCCCCccC------------C--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----AA---ENFDYPVAM------------D-------- 52 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~-----~~---~~~~~~~~~------------~-------- 52 (175)
+|+++||+||||||||||+|+|+|+++|++|+|.++|... +. ....+.+.. +
T Consensus 28 ~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 107 (635)
T PRK11147 28 DNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHL 107 (635)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999976321 00 001110000 0
Q ss_pred -----cchhc--------------------cHHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCC
Q 030566 53 -----IRELI--------------------SLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCP 107 (175)
Q Consensus 53 -----~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP 107 (175)
..+++ ....+++.+++.. ......-+..+++|..|++++.. +|++||||||
T Consensus 108 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~--~~~~~~LSgGekqRv~LAraL~~--~P~lLLLDEP 183 (635)
T PRK11147 108 VETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP--DAALSSLSGGWLRKAALGRALVS--NPDVLLLDEP 183 (635)
T ss_pred hccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC--CCchhhcCHHHHHHHHHHHHHhc--CCCEEEEcCC
Confidence 00000 0123344455432 11222223348999999999999 9999999999
Q ss_pred CcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhh-HHhhhhcc
Q 030566 108 GQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV-VQRAYSFL 171 (175)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 171 (175)
+...+....+++.++|+++ +.|| +++||+.+++.++|++++.+..+..+ +.++|+.|
T Consensus 184 t~~LD~~~~~~L~~~L~~~---~~tv----livsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 184 TNHLDIETIEWLEGFLKTF---QGSI----IFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred CCccCHHHHHHHHHHHHhC---CCEE----EEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHH
Confidence 6666666677777777776 3588 99999999999999999999988775 45666554
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-26 Score=168.73 Aligned_cols=158 Identities=13% Similarity=0.116 Sum_probs=115.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccc--------------------cCCCCccCCcchhccH-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--------------------NFDYPVAMDIRELISL- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~--------------------~~~~~~~~~~~~~~~~- 59 (175)
+|+++.|||.+||||||++|||.=+..|+.|.|.++|..++-. ..+.++ +.......
T Consensus 31 ~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVF--Q~FNLWsHm 108 (256)
T COG4598 31 AGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVF--QHFNLWSHM 108 (256)
T ss_pred CCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhh--hhcchhHHH
Confidence 5999999999999999999999999999999999998764221 011111 11111111
Q ss_pred -------------------------HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccc
Q 030566 60 -------------------------EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFT 114 (175)
Q Consensus 60 -------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~ 114 (175)
...+..+++..+.......-+-.|+||.+++|+++- +|+++++|||+...+..
T Consensus 109 tvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLam--eP~vmLFDEPTSALDPE 186 (256)
T COG4598 109 TVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAM--EPEVMLFDEPTSALDPE 186 (256)
T ss_pred HHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhc--CCceEeecCCcccCCHH
Confidence 234444455444322222223348899999999999 99999999994444344
Q ss_pred cchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 115 HVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 115 ~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
-.-.+.+++++++++|+|. +++||.|..+.+.++.+++++.|.+--|+
T Consensus 187 lVgEVLkv~~~LAeEgrTM----v~VTHEM~FAR~Vss~v~fLh~G~iEE~G 234 (256)
T COG4598 187 LVGEVLKVMQDLAEEGRTM----VVVTHEMGFARDVSSHVIFLHQGKIEEEG 234 (256)
T ss_pred HHHHHHHHHHHHHHhCCeE----EEEeeehhHHHhhhhheEEeecceecccC
Confidence 3445667899999999999 99999999999999999999988764443
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.8e-26 Score=196.15 Aligned_cols=161 Identities=20% Similarity=0.129 Sum_probs=113.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc-------H-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS-------L- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~-------~- 59 (175)
+|+.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+++.+ .-+.++++. .
T Consensus 343 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~ 422 (544)
T TIGR01842 343 AGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPE 422 (544)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHH
Confidence 599999999999999999999999999999999999976432 1222222 112333221 1
Q ss_pred -----------HHHHHHhCCCCC--CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 60 -----------EDVMEELGLGPN--GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 60 -----------~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
.+.++.+.-+.. .......-+..|+||..++|++.+ +|++++||||+...+....+.+.+.++++
T Consensus 423 ~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~--~~~ililDEpts~LD~~~~~~i~~~l~~~ 500 (544)
T TIGR01842 423 KIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG--DPKLVVLDEPNSNLDEEGEQALANAIKAL 500 (544)
T ss_pred HHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 112222211111 000001123348999999999999 99999999996555566666777788887
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
.++++|+ +++||+++.+ +.+|+++.++.|..+.+++.
T Consensus 501 ~~~~~tv----i~ith~~~~~-~~~d~i~~l~~G~i~~~g~~ 537 (544)
T TIGR01842 501 KARGITV----VVITHRPSLL-GCVDKILVLQDGRIARFGER 537 (544)
T ss_pred hhCCCEE----EEEeCCHHHH-HhCCEEEEEECCEEEeeCCH
Confidence 6568999 9999999865 67999999999888766543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-26 Score=200.02 Aligned_cols=161 Identities=14% Similarity=0.089 Sum_probs=111.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc----ccc-CCCCccCCcchhcc--------------HHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AEN-FDYPVAMDIRELIS--------------LED 61 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~----~~~-~~~~~~~~~~~~~~--------------~~~ 61 (175)
+|++++|+||||||||||+|+|+|+.+|++|+|.+ |.+.. .+. ..+.+..++.+++. ..+
T Consensus 344 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 422 (635)
T PRK11147 344 RGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLG 422 (635)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHH
Confidence 59999999999999999999999999999999998 43311 111 11222233333221 123
Q ss_pred HHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeee
Q 030566 62 VMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (175)
Q Consensus 62 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~ 140 (175)
+++.+++... .......-+.++++|..+++++.. +|++||||||+...+....+.+.++++++ +.|| +++
T Consensus 423 ~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~--~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tv----i~v 493 (635)
T PRK11147 423 YLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLK--PSNLLILDEPTNDLDVETLELLEELLDSY---QGTV----LLV 493 (635)
T ss_pred HHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeE----EEE
Confidence 3444444321 111111223348999999999999 99999999996665565566666666554 4589 999
Q ss_pred ccchhhhhcCCCceeEec--cchhhHHhhhhcc
Q 030566 141 SQVCIRFRTLPPCIVCFC--CTHTVVQRAYSFL 171 (175)
Q Consensus 141 sH~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 171 (175)
||+.+++..+|++++++. +..+.+.++|.-|
T Consensus 494 SHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 494 SHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred ECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 999999999999999996 3445556666655
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=197.35 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=110.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+|+.++|+||||||||||+++|+|++ |++|+|.++|.++.. +.+++.+ .-+.++++.
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~e 453 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDE 453 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHH
Confidence 59999999999999999999999999 899999999987532 1233322 223443332
Q ss_pred -HHHHHHHhCCC---------CC--CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 -LEDVMEELGLG---------PN--GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l~---------~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++..++. .+ ....-..-+.+|+||..|||++.+ +|+++|||||+...+......+.+.+.++
T Consensus 454 ei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~--~~~IliLDE~TSaLD~~te~~i~~~l~~~ 531 (588)
T PRK11174 454 QLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQ--PCQLLLLDEPTASLDAHSEQLVMQALNAA 531 (588)
T ss_pred HHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 11222221111 11 000000123349999999999999 99999999995555555555666677776
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
. +++|+ +++||+++.+. .+|+++.++.|..+-+++
T Consensus 532 ~-~~~Tv----IiItHrl~~i~-~aD~Iivl~~G~i~e~G~ 566 (588)
T PRK11174 532 S-RRQTT----LMVTHQLEDLA-QWDQIWVMQDGQIVQQGD 566 (588)
T ss_pred h-CCCEE----EEEecChHHHH-hCCEEEEEeCCeEeecCC
Confidence 4 57899 99999998764 599999999988775554
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=181.33 Aligned_cols=156 Identities=15% Similarity=-0.000 Sum_probs=102.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC-cccccCCCCccCCcchhcc---------HHHHHHHhCCCC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLGP 70 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~ 70 (175)
+||+++|+|+||||||||+++|+|+++|++|+|.++|.- ...+...+.+ .++.+++. ....++..++..
T Consensus 62 ~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~ 140 (282)
T cd03291 62 KGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP-GTIKENIIFGVSYDEYRYKSVVKACQLEE 140 (282)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccc-cCHHHHhhcccccCHHHHHHHHHHhCCHH
Confidence 599999999999999999999999999999999997621 1111111111 13332211 011222222211
Q ss_pred CC------c-----hhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH-HHHHHhCCCcEEEEEe
Q 030566 71 NG------G-----LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF-VDHLKSRNFNVCAVYL 138 (175)
Q Consensus 71 ~~------~-----~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~-l~~l~~~g~tvli~~l 138 (175)
.. . .....-+..++++..+++++.. +|+++|||||....+......+.+. ++.++ ++.|| +
T Consensus 141 ~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~--~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tI----i 213 (282)
T cd03291 141 DITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTR----I 213 (282)
T ss_pred HHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEE----E
Confidence 00 0 0001123348899999999999 9999999999555445545555543 44554 47899 9
Q ss_pred eeccchhhhhcCCCceeEeccchhhHH
Q 030566 139 LDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
++||+++++ ..|+++++++.+..+..
T Consensus 214 iisH~~~~~-~~~d~i~~l~~G~i~~~ 239 (282)
T cd03291 214 LVTSKMEHL-KKADKILILHEGSSYFY 239 (282)
T ss_pred EEeCChHHH-HhCCEEEEEECCEEEEE
Confidence 999999998 57999999988876543
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.7e-26 Score=194.64 Aligned_cols=160 Identities=17% Similarity=0.128 Sum_probs=117.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeec-Cc--ccccCCCCccCCcchhc--------------------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DP--AAENFDYPVAMDIRELI-------------------- 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~-~~--~~~~~~~~~~~~~~~~~-------------------- 57 (175)
+|+.+||||+||||||||+|+|+|...|++|+|...+. .+ -.+........++.+.+
T Consensus 28 ~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~ 107 (530)
T COG0488 28 PGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYAL 107 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 49999999999999999999999999999999998652 11 11111111111111111
Q ss_pred --------------------------cHHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCc
Q 030566 58 --------------------------SLEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ 109 (175)
Q Consensus 58 --------------------------~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~ 109 (175)
....++..+++... ..+..++| ++.|..||+++.. +|++|+||||+.
T Consensus 108 ~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~---~~~~~~LSGG~r~Rv~LA~aL~~--~pDlLLLDEPTN 182 (530)
T COG0488 108 LADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE---DRPVSSLSGGWRRRVALARALLE--EPDLLLLDEPTN 182 (530)
T ss_pred cccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc---cCchhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCc
Confidence 01233344444443 12234444 8899999999999 999999999977
Q ss_pred ccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccc-hhhHHhhhhccc
Q 030566 110 IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT-HTVVQRAYSFLF 172 (175)
Q Consensus 110 ~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 172 (175)
..+..+..|+.+.|+++ +| |+ +++|||-....+.|++++-++.+ ...|.++|+.|.
T Consensus 183 HLD~~~i~WLe~~L~~~--~g-tv----iiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~ 239 (530)
T COG0488 183 HLDLESIEWLEDYLKRY--PG-TV----IVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYL 239 (530)
T ss_pred ccCHHHHHHHHHHHHhC--CC-cE----EEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHH
Confidence 77777777777777754 46 99 99999999999999999999997 678888888874
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-26 Score=200.94 Aligned_cols=157 Identities=17% Similarity=0.118 Sum_probs=107.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.++|+|+||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ .-+.++++.
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~ 557 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDE 557 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHH
Confidence 599999999999999999999999999999999999987642 2233322 113333332
Q ss_pred HHHHHHHhCCCCC---------Cchhh--hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 LEDVMEELGLGPN---------GGLIY--CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 ~~~~~~~~~l~~~---------~~~~~--~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++..++... -.... ..-+.+|+||..++|++.+ +|++++||||+...+......+.+.++++
T Consensus 558 i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~--~p~iLiLDEpTS~LD~~te~~i~~~L~~~- 634 (686)
T TIGR03797 558 AWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVR--KPRILLFDEATSALDNRTQAIVSESLERL- 634 (686)
T ss_pred HHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHHHHHHHh-
Confidence 1222332222210 00000 0113349999999999999 99999999994444444444444445443
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++|+ +++||+++.+.. +|++++++.|..+-+++
T Consensus 635 --~~T~----IiItHr~~~i~~-~D~Iivl~~G~iv~~G~ 667 (686)
T TIGR03797 635 --KVTR----IVIAHRLSTIRN-ADRIYVLDAGRVVQQGT 667 (686)
T ss_pred --CCeE----EEEecChHHHHc-CCEEEEEECCEEEEECC
Confidence 6799 999999988755 99999999988775443
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=197.13 Aligned_cols=159 Identities=16% Similarity=0.081 Sum_probs=108.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.++|+|+||||||||+|+|+|+++|++|+|.++|.+... +.++|.+ .-+.++++.
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~ 447 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSR 447 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCH
Confidence 599999999999999999999999999999999999987532 2233333 112222221
Q ss_pred --HHHHHHHhCCCC---------CCchhh--hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHH
Q 030566 59 --LEDVMEELGLGP---------NGGLIY--CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 59 --~~~~~~~~~l~~---------~~~~~~--~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
..++++..++.. +-.... ..-+..|+||..++|++.+ +|++++||||+...+......+.+.+.+
T Consensus 448 ~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~--~~~ililDEptsaLD~~t~~~i~~~l~~ 525 (582)
T PRK11176 448 EQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR--DSPILILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred HHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh--CCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 111222222110 000000 0113348999999999999 9999999999555555555566666766
Q ss_pred HHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 126 LKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 126 l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+. +++|+ +++||+++.+ +.+|+++.++.|..+-+++
T Consensus 526 ~~-~~~tv----I~VtHr~~~~-~~~D~Ii~l~~g~i~e~g~ 561 (582)
T PRK11176 526 LQ-KNRTS----LVIAHRLSTI-EKADEILVVEDGEIVERGT 561 (582)
T ss_pred Hh-CCCEE----EEEecchHHH-HhCCEEEEEECCEEEEeCC
Confidence 63 46899 9999999766 5699999999887765443
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=196.28 Aligned_cols=160 Identities=15% Similarity=0.100 Sum_probs=112.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC-c--ccccC-CCCccCCcchhcc--------------HHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENF-DYPVAMDIRELIS--------------LEDV 62 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~--~~~~~-~~~~~~~~~~~~~--------------~~~~ 62 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.+++.. + -.+.. .+.+.+++.+++. ...+
T Consensus 349 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 428 (556)
T PRK11819 349 PGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAY 428 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHH
Confidence 599999999999999999999999999999999984321 0 11111 2222233333321 1235
Q ss_pred HHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeec
Q 030566 63 MEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (175)
Q Consensus 63 ~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~s 141 (175)
++.+++... .......-+.++++|..+++++.. +|++++||||+...+....+.+.++|+++ .+ || +++|
T Consensus 429 l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~-tv----i~vt 499 (556)
T PRK11819 429 VGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQ--GGNVLLLDEPTNDLDVETLRALEEALLEF--PG-CA----VVIS 499 (556)
T ss_pred HHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CC-eE----EEEE
Confidence 566666421 111222223448999999999999 99999999996666666677777777775 23 78 9999
Q ss_pred cchhhhhcCCCceeEecc-chhh-HHhhhh
Q 030566 142 QVCIRFRTLPPCIVCFCC-THTV-VQRAYS 169 (175)
Q Consensus 142 H~~~~~~~~~~~~~~~~~-~~~~-~~~~~~ 169 (175)
|+++++..+|+++++++. +..+ ..++|.
T Consensus 500 Hd~~~~~~~~d~i~~l~~~g~~~~~~g~~~ 529 (556)
T PRK11819 500 HDRWFLDRIATHILAFEGDSQVEWFEGNFQ 529 (556)
T ss_pred CCHHHHHHhCCEEEEEECCCeEEEecCCHH
Confidence 999999999999999985 4333 455544
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-26 Score=201.93 Aligned_cols=157 Identities=13% Similarity=0.096 Sum_probs=106.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.++|+||||||||||+|+|+|+++|++|+|.++|.+... +.+++.+ .-+.++++.
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~ 583 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDA 583 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHH
Confidence 599999999999999999999999999999999999987532 2233332 123333332
Q ss_pred -HHHHHHHhCCCC---------CCchhh--hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 -LEDVMEELGLGP---------NGGLIY--CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l~~---------~~~~~~--~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++..++.. +..... ..-+.+|+||..++|++.+ +|++++||||+...+....+.+.+. +
T Consensus 584 ~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~--~p~iliLDEptS~LD~~te~~i~~~---l 658 (710)
T TIGR03796 584 DLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR--NPSILILDEATSALDPETEKIIDDN---L 658 (710)
T ss_pred HHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh--CCCEEEEECccccCCHHHHHHHHHH---H
Confidence 112222222211 000000 0112349999999999999 9999999999443333333333333 4
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++.++|+ +++||+++.+.. +|++++++.|..+-+++
T Consensus 659 ~~~~~T~----IiitHrl~~i~~-~D~Iivl~~G~i~~~G~ 694 (710)
T TIGR03796 659 RRRGCTC----IIVAHRLSTIRD-CDEIIVLERGKVVQRGT 694 (710)
T ss_pred HhcCCEE----EEEecCHHHHHh-CCEEEEEeCCEEEEecC
Confidence 4468999 999999988755 99999999988775443
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-25 Score=197.89 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=118.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCCCCc-------cCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPV-------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~-------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. +.+++.+ ..+..+++.
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 112 (648)
T PRK10535 33 AGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAV 112 (648)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHH
Confidence 499999999999999999999999999999999999976421 1222222 122222211
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..+++|..+++++.. +|++++||||....+....+.+.++++++
T Consensus 113 ~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~--~P~lLllDEP~~gLD~~s~~~l~~ll~~l 190 (648)
T PRK10535 113 YAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN--GGQVILADEPTGALDSHSGEEVMAILHQL 190 (648)
T ss_pred HcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 1233444444432211211123348899999999999 99999999997777777788888899998
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++|.|+ +++||+.+.+. .||+++.+..+..+.+..
T Consensus 191 ~~~g~ti----livsH~~~~~~-~~d~i~~l~~G~i~~~g~ 226 (648)
T PRK10535 191 RDRGHTV----IIVTHDPQVAA-QAERVIEIRDGEIVRNPP 226 (648)
T ss_pred HhcCCEE----EEECCCHHHHH-hCCEEEEEECCEEEeecC
Confidence 7779999 99999999875 699999999988775544
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-25 Score=196.48 Aligned_cols=159 Identities=13% Similarity=0.034 Sum_probs=111.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.++|+|+||||||||+|+|+|+++|++|+|.++|.+... +.+++.+ .-+.++++.
T Consensus 366 ~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~ 445 (592)
T PRK10790 366 SRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQ 445 (592)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHH
Confidence 599999999999999999999999999999999999987532 2233332 113333322
Q ss_pred HHHHHHHhCCCC---------CCchhh--hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 LEDVMEELGLGP---------NGGLIY--CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 ~~~~~~~~~l~~---------~~~~~~--~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++..++.. +..... ..-+.+|+||..++|++.+ +|++++||||+...+....+.+.+.++++.
T Consensus 446 i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~--~~~illlDEpts~LD~~t~~~i~~~l~~~~ 523 (592)
T PRK10790 446 VWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ--TPQILILDEATANIDSGTEQAIQQALAAVR 523 (592)
T ss_pred HHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 122333332221 000000 0123349999999999999 999999999965555555666667777764
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+ ++|+ +++||+++.+. .+|+++.++.|..+-+++
T Consensus 524 ~-~~tv----IivtHr~~~l~-~~D~ii~l~~G~i~~~G~ 557 (592)
T PRK10790 524 E-HTTL----VVIAHRLSTIV-EADTILVLHRGQAVEQGT 557 (592)
T ss_pred C-CCEE----EEEecchHHHH-hCCEEEEEECCEEEEEcC
Confidence 4 6899 99999998775 589999999887765444
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-25 Score=199.04 Aligned_cols=159 Identities=18% Similarity=0.149 Sum_probs=111.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+|+.++|+|+||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ .-+.++++.
T Consensus 482 ~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~ 561 (694)
T TIGR01846 482 PGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFE 561 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHH
Confidence 599999999999999999999999999999999999987532 2233333 112222221
Q ss_pred -HHHHHHHhCC---------CCCC--chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 -LEDVMEELGL---------GPNG--GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l---------~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++..++ +.+. ...-..-+.+|+||..++|++.+ +|++++||||+...+....+.+.+.++++
T Consensus 562 ~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~--~~~ililDEpts~LD~~~~~~i~~~l~~~ 639 (694)
T TIGR01846 562 HVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG--NPRILIFDEATSALDYESEALIMRNMREI 639 (694)
T ss_pred HHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 1111121111 1110 00001123348999999999999 99999999995555555566677777776
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
. +++|+ +++||+++.+.. +|+++.++.|..+-+++
T Consensus 640 ~-~~~t~----i~itH~~~~~~~-~d~ii~l~~G~i~~~g~ 674 (694)
T TIGR01846 640 C-RGRTV----IIIAHRLSTVRA-CDRIIVLEKGQIAESGR 674 (694)
T ss_pred h-CCCEE----EEEeCChHHHHh-CCEEEEEeCCEEEEeCC
Confidence 4 57899 999999998855 99999999998875544
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-25 Score=195.23 Aligned_cols=159 Identities=16% Similarity=0.106 Sum_probs=113.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.+... +.+++.+ .-+.++++.
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~ 444 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDE 444 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHH
Confidence 599999999999999999999999999999999999987532 1233332 113333332
Q ss_pred -HHHHHHHhCCCCCCch----hh------hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 -LEDVMEELGLGPNGGL----IY------CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -~~~~~~~~~l~~~~~~----~~------~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
...+++..++...... .. ..-+..|+||..++|++.+ +|++++||||+...+....+.+.+.+.++.
T Consensus 445 ~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~--~~~ililDE~ts~lD~~t~~~i~~~l~~~~ 522 (574)
T PRK11160 445 ALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH--DAPLLLLDEPTEGLDAETERQILELLAEHA 522 (574)
T ss_pred HHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 1233333333221100 00 0112348999999999999 999999999966655666666777777764
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++|+ +++||+++.+.. +|+++.++.|..+-+++
T Consensus 523 -~~~tv----iiitHr~~~~~~-~d~i~~l~~G~i~~~g~ 556 (574)
T PRK11160 523 -QNKTV----LMITHRLTGLEQ-FDRICVMDNGQIIEQGT 556 (574)
T ss_pred -CCCEE----EEEecChhHHHh-CCEEEEEeCCeEEEeCC
Confidence 47899 999999998865 89999999888776554
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-25 Score=192.65 Aligned_cols=150 Identities=17% Similarity=0.079 Sum_probs=107.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC-c--ccccC-CCCccCCcchhcc--------------HHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENF-DYPVAMDIRELIS--------------LEDV 62 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~--~~~~~-~~~~~~~~~~~~~--------------~~~~ 62 (175)
+||+++|+||||||||||+++|+|+.+|++|+|.+++.. + -.+.. .+.+.+++.+++. ...+
T Consensus 347 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 426 (552)
T TIGR03719 347 PGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAY 426 (552)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHH
Confidence 499999999999999999999999999999999984321 0 11111 1222233333221 1245
Q ss_pred HHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeec
Q 030566 63 MEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (175)
Q Consensus 63 ~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~s 141 (175)
++.+++... .......-+.++++|..+++++.. +|+++|||||+...+....+.+.++|+++ +.|| +++|
T Consensus 427 l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~~v----iivs 497 (552)
T TIGR03719 427 VGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKS--GGNVLLLDEPTNDLDVETLRALEEALLEF---AGCA----VVIS 497 (552)
T ss_pred HHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHHHHHHHC---CCeE----EEEe
Confidence 566666321 112222223448999999999999 99999999996666666677777777776 2378 9999
Q ss_pred cchhhhhcCCCceeEecc
Q 030566 142 QVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 142 H~~~~~~~~~~~~~~~~~ 159 (175)
|+++++..+|++++++..
T Consensus 498 Hd~~~~~~~~d~i~~l~~ 515 (552)
T TIGR03719 498 HDRWFLDRIATHILAFEG 515 (552)
T ss_pred CCHHHHHHhCCEEEEEEC
Confidence 999999999999999985
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-25 Score=188.20 Aligned_cols=160 Identities=18% Similarity=0.106 Sum_probs=117.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCC------ccCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYP------VAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~------~~~~~~~~~~--------- 58 (175)
+|+.++|+|+||||||||++.|+|+.+|++|+|.++|.+.++ +++.|. +.-+.++++.
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e 425 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDE 425 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHH
Confidence 589999999999999999999999999999999999987543 223333 2224555542
Q ss_pred -HHHHHHHhCCCCCCch----hh------hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 -LEDVMEELGLGPNGGL----IY------CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -~~~~~~~~~l~~~~~~----~~------~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
...+++..++...... .. ..-+..|+||.+++|++.. +++++++|||+...+......+.+.+.++.
T Consensus 426 ~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~--~~~l~llDEpTA~LD~etE~~i~~~l~~l~ 503 (559)
T COG4988 426 EIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS--PASLLLLDEPTAHLDAETEQIILQALQELA 503 (559)
T ss_pred HHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC--CCCEEEecCCccCCCHhHHHHHHHHHHHHH
Confidence 2334444433322211 10 0123448999999999999 999999999977766776777777888886
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
+ ++|| +++||++..+ .-+|++++++.|..+=++.+
T Consensus 504 ~-~ktv----l~itHrl~~~-~~~D~I~vld~G~l~~~g~~ 538 (559)
T COG4988 504 K-QKTV----LVITHRLEDA-ADADRIVVLDNGRLVEQGTH 538 (559)
T ss_pred h-CCeE----EEEEcChHHH-hcCCEEEEecCCceeccCCH
Confidence 5 4899 9999999987 45699999997776655443
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-25 Score=199.01 Aligned_cols=157 Identities=18% Similarity=0.119 Sum_probs=111.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCCCCC-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNG- 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 72 (175)
+||.++|+|+||||||||+|+|+|+++|++|+|.++|.+... +.+++.+ +....|. .++.+++.++...
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~--Q~~~lf~-~TI~eNi~~~~~~~ 566 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVP--QDPRLFY-GTLRDNIALGAPYA 566 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEEC--CChhhhh-hhHHHHHhCCCCCC
Confidence 599999999999999999999999999999999999987532 2333333 1111111 1222222222110
Q ss_pred -----------------------------chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 73 -----------------------------GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 73 -----------------------------~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
...-..-+.+|+||..++|++.+ +|++++||||+...+......+.+.+
T Consensus 567 ~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~--~p~iliLDE~Ts~LD~~te~~i~~~l 644 (694)
T TIGR03375 567 DDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR--DPPILLLDEPTSAMDNRSEERFKDRL 644 (694)
T ss_pred CHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 00000123348999999999999 99999999995555555556666677
Q ss_pred HHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
.++. +++|+ +++||+++.+ +.+|++++++.|..+-+++.
T Consensus 645 ~~~~-~~~T~----iiItHrl~~~-~~~D~iivl~~G~i~e~G~~ 683 (694)
T TIGR03375 645 KRWL-AGKTL----VLVTHRTSLL-DLVDRIIVMDNGRIVADGPK 683 (694)
T ss_pred HHHh-CCCEE----EEEecCHHHH-HhCCEEEEEeCCEEEeeCCH
Confidence 7764 47899 9999999876 67999999999988766543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-25 Score=194.97 Aligned_cols=159 Identities=16% Similarity=0.129 Sum_probs=110.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc-------H-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS-------L- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~-------~- 59 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+++.+ .-+.++++. .
T Consensus 360 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~ 439 (585)
T TIGR01192 360 AGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDE 439 (585)
T ss_pred CCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHH
Confidence 599999999999999999999999999999999999976432 1222222 112333221 0
Q ss_pred --HHHHHHhCCC---------CC--CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 60 --EDVMEELGLG---------PN--GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 60 --~~~~~~~~l~---------~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
...++..++. .. .......-+.+|+||..++|++.. +|++++||||+...+....+.+.+.++++
T Consensus 440 ~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~--~p~ililDEpts~LD~~~~~~i~~~l~~~ 517 (585)
T TIGR01192 440 EVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK--NAPILVLDEATSALDVETEARVKNAIDAL 517 (585)
T ss_pred HHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 1111111110 00 000000113348999999999999 99999999996665566666777778776
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
. +++|+ +++||+++.+. .+|+++.++.|..+-+++
T Consensus 518 ~-~~~tv----I~isH~~~~~~-~~d~i~~l~~G~i~~~g~ 552 (585)
T TIGR01192 518 R-KNRTT----FIIAHRLSTVR-NADLVLFLDQGRLIEKGS 552 (585)
T ss_pred h-CCCEE----EEEEcChHHHH-cCCEEEEEECCEEEEECC
Confidence 4 48899 99999999885 599999998887665443
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-25 Score=194.56 Aligned_cols=159 Identities=16% Similarity=0.107 Sum_probs=110.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+|++++|+||||||||||+++|+|+++|++|+|.++|.+... +.+++.+ .-+.++++.
T Consensus 340 ~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~ 419 (569)
T PRK10789 340 PGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQ 419 (569)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHH
Confidence 599999999999999999999999999999999999987532 1223322 112222221
Q ss_pred -HHHHHHHhCCCC---------C--CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 -LEDVMEELGLGP---------N--GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l~~---------~--~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
...+++..++.. . .......-+.+|+||..++|++.+ +|++++||||+...+....+.+.+.++++
T Consensus 420 ~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~--~~~illlDEpts~LD~~~~~~i~~~l~~~ 497 (569)
T PRK10789 420 EIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL--NAEILILDDALSAVDGRTEHQILHNLRQW 497 (569)
T ss_pred HHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 112222222110 0 000000122348999999999999 99999999996665566666777778776
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
. +++|+ +++||+++.+ ..+|+++.++.|..+-+++
T Consensus 498 ~-~~~ti----i~itH~~~~~-~~~d~i~~l~~G~i~~~g~ 532 (569)
T PRK10789 498 G-EGRTV----IISAHRLSAL-TEASEILVMQHGHIAQRGN 532 (569)
T ss_pred h-CCCEE----EEEecchhHH-HcCCEEEEEeCCEEEEecC
Confidence 4 58999 9999999877 4599999998887665443
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-25 Score=194.20 Aligned_cols=158 Identities=16% Similarity=0.112 Sum_probs=108.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.++|+|+||||||||+|+|+|+++|++|+|.++|.++.. +.++|.+ .-+.++++.
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~ 439 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDE 439 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHH
Confidence 599999999999999999999999999999999999977532 2233332 113333322
Q ss_pred -HHHHHHHhCCCC---------CCchhhh--HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 -LEDVMEELGLGP---------NGGLIYC--MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l~~---------~~~~~~~--~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
...+++..++.. +-..... .-+.+|+||..++|++.+ +|++++||||+...+......+.+.++++
T Consensus 440 ~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~--~~~iliLDEpts~LD~~t~~~i~~~l~~~ 517 (588)
T PRK13657 440 EMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLK--DPPILILDEATSALDVETEAKVKAALDEL 517 (588)
T ss_pred HHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 112222222110 0000000 112348999999999999 99999999995555555555666667665
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
. +++|+ +++||+.+.+ +.+|+++.++.|..+-++
T Consensus 518 ~-~~~tv----IiitHr~~~~-~~~D~ii~l~~G~i~~~g 551 (588)
T PRK13657 518 M-KGRTT----FIIAHRLSTV-RNADRILVFDNGRVVESG 551 (588)
T ss_pred h-cCCEE----EEEEecHHHH-HhCCEEEEEECCEEEEeC
Confidence 3 47899 9999999876 569999999887766433
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-25 Score=199.55 Aligned_cols=155 Identities=16% Similarity=0.103 Sum_probs=108.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCC----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLG---- 69 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~---- 69 (175)
+|+.++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ +....| ..++.+++.++
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~--Q~~~lf-~gTI~eNi~l~~~~~ 575 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLP--QEPYIF-SGSILENLLLGAKEN 575 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEe--cCceeh-hHHHHHHHhccCCCC
Confidence 599999999999999999999999999999999999987532 2333333 111111 11233333222
Q ss_pred -------------------------CCCchhh--hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030566 70 -------------------------PNGGLIY--CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 70 -------------------------~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
.+..... ..-+.+|+||..++|++.+ +|++++||||+...+....+.+.+.
T Consensus 576 ~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~--~p~iliLDE~Ts~LD~~te~~i~~~ 653 (708)
T TIGR01193 576 VSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT--DSKVLILDESTSNLDTITEKKIVNN 653 (708)
T ss_pred CCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCccccCCHHHHHHHHHH
Confidence 0000000 0112348999999999999 9999999999555444545556566
Q ss_pred HHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 123 VDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++++ +++|+ +++||+++.+ ..+|+++.++.|..+-+++
T Consensus 654 L~~~--~~~T~----IiitHr~~~~-~~~D~i~~l~~G~i~~~G~ 691 (708)
T TIGR01193 654 LLNL--QDKTI----IFVAHRLSVA-KQSDKIIVLDHGKIIEQGS 691 (708)
T ss_pred HHHh--cCCEE----EEEecchHHH-HcCCEEEEEECCEEEEECC
Confidence 6654 47899 9999999876 6699999999988775544
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-25 Score=169.16 Aligned_cols=161 Identities=14% Similarity=0.155 Sum_probs=108.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEee-cCcccc------cCCCCccCCcchhccHHH------------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPAAE------NFDYPVAMDIRELISLED------------ 61 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g-~~~~~~------~~~~~~~~~~~~~~~~~~------------ 61 (175)
+||.-+|||||||||||++.+|+|..+|+.|++.++| .++... ..+....++....|...+
T Consensus 30 ~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~ 109 (249)
T COG4674 30 PGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRD 109 (249)
T ss_pred CCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCC
Confidence 4899999999999999999999999999999999998 554220 111111223333333333
Q ss_pred ---------------------HHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHH
Q 030566 62 ---------------------VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120 (175)
Q Consensus 62 ---------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~ 120 (175)
+++.++++..... ....+|-.|+.||..+|.-..+|++|++|||.....-.......
T Consensus 110 k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~--~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~ta 187 (249)
T COG4674 110 KSVFASLFARLRAEERRRIDELLATIGLGDERDR--LAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA 187 (249)
T ss_pred cchHHHhhhhcChhHHHHHHHHHHHcccchhhhh--hhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHH
Confidence 3333444333211 12334433455666644433499999999993332222233456
Q ss_pred HHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 121 NFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 121 ~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
++++.++. +.+| +++.|||+.+..+++++.+|+.|.+.-.++.
T Consensus 188 eLl~~la~-~hsi----lVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 188 ELLKSLAG-KHSI----LVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred HHHHHHhc-CceE----EEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 68888865 5789 9999999999999999999999987665543
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-25 Score=194.50 Aligned_cols=163 Identities=16% Similarity=0.097 Sum_probs=123.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccc---cceeEEeecCccc----ccCCC-------CccCCcchhcc--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~---~G~I~i~g~~~~~----~~~~~-------~~~~~~~~~~~-------- 58 (175)
+||+++|+||||||||||+++|+|..++. +|+|.++|.+... +.++| .+.+++++++.
T Consensus 50 ~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 129 (617)
T TIGR00955 50 PGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMP 129 (617)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCC
Confidence 49999999999999999999999998874 7999999986421 12222 23334544432
Q ss_pred -----------HHHHHHHhCCCCCCchhhh------HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIYC------MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN 121 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~ 121 (175)
..++++.+++......... .-+.+|++|..+++++.. +|++++||||+...+......+.+
T Consensus 130 ~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~--~p~vlllDEPtsgLD~~~~~~l~~ 207 (617)
T TIGR00955 130 RRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLT--DPPLLFCDEPTSGLDSFMAYSVVQ 207 (617)
T ss_pred CCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHc--CCCEEEeeCCCcchhHHHHHHHHH
Confidence 2345566666443222211 123348999999999999 999999999966666666777888
Q ss_pred HHHHHHhCCCcEEEEEeeeccchh-hhhcCCCceeEeccchhhHHhhhh
Q 030566 122 FVDHLKSRNFNVCAVYLLDSQVCI-RFRTLPPCIVCFCCTHTVVQRAYS 169 (175)
Q Consensus 122 ~l~~l~~~g~tvli~~l~~sH~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 169 (175)
.+++++++|.|| ++++|++. ++.+++|+++++..|..+++++..
T Consensus 208 ~L~~l~~~g~tv----i~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~ 252 (617)
T TIGR00955 208 VLKGLAQKGKTI----ICTIHQPSSELFELFDKIILMAEGRVAYLGSPD 252 (617)
T ss_pred HHHHHHhCCCEE----EEEeCCCCHHHHHHhceEEEeeCCeEEEECCHH
Confidence 999998789999 99999995 789999999999999998887643
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.5e-25 Score=191.42 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=112.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhccH--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELISL-------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~~-------- 59 (175)
+||.+||+||||||||||++.|+++++|++|+|.+||.+++. +.+++.+ .-++++++..
T Consensus 354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~e 433 (567)
T COG1132 354 PGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDE 433 (567)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHH
Confidence 599999999999999999999999999999999999987643 2333333 1123333220
Q ss_pred -----------HHHHHHh--CCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 60 -----------EDVMEEL--GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 60 -----------~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
.+..+++ ++.......-..-+.+|+||.++||++.. +||+++||||+...+......+.+.++++
T Consensus 434 ei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~--~~~ILILDEaTSalD~~tE~~I~~~l~~l 511 (567)
T COG1132 434 EIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR--NPPILILDEATSALDTETEALIQDALKKL 511 (567)
T ss_pred HHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc--CCCEEEEeccccccCHHhHHHHHHHHHHH
Confidence 1111222 11111110001123359999999999999 99999999996555555555666677766
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
. +++|+ ++++|++..+.+ +|++++++.|..+-.++
T Consensus 512 ~-~~rT~----iiIaHRlsti~~-aD~IiVl~~G~i~e~G~ 546 (567)
T COG1132 512 L-KGRTT----LIIAHRLSTIKN-ADRIIVLDNGRIVERGT 546 (567)
T ss_pred h-cCCEE----EEEeccHhHHHh-CCEEEEEECCEEEEecC
Confidence 5 56799 889999988877 99999999998655444
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-25 Score=198.06 Aligned_cols=157 Identities=15% Similarity=0.062 Sum_probs=105.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ .-+.++++.
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e 585 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDE 585 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHH
Confidence 599999999999999999999999999999999999987532 1223222 223333332
Q ss_pred -HHHHHHHhCCCC---------CCchhh--hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 -LEDVMEELGLGP---------NGGLIY--CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l~~---------~~~~~~--~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++..++.. +-.... ..-+.+|+||..++|++.+ +|+++|||||+...+....+.+.+ ..
T Consensus 586 ~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~--~p~ILILDEpTSaLD~~te~~i~~---~~ 660 (711)
T TIGR00958 586 EIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR--KPRVLILDEATSALDAECEQLLQE---SR 660 (711)
T ss_pred HHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEEccccccCHHHHHHHHH---hh
Confidence 122233322211 000000 1123349999999999999 999999999944433333333333 11
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
..+++|+ +++||+++.+ ..+|+++.++.|..+-+++
T Consensus 661 ~~~~~Tv----IiItHrl~~i-~~aD~IivL~~G~ive~Gt 696 (711)
T TIGR00958 661 SRASRTV----LLIAHRLSTV-ERADQILVLKKGSVVEMGT 696 (711)
T ss_pred ccCCCeE----EEEeccHHHH-HhCCEEEEEECCEEEEeeC
Confidence 2357899 9999999876 5589999999988775544
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-25 Score=191.19 Aligned_cols=156 Identities=17% Similarity=0.080 Sum_probs=108.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.++|+|+||||||||+|+|+|+++|++|+|.++|.+... +.++|.+ .-+.++++.
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~ 436 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADR 436 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCH
Confidence 599999999999999999999999999999999999976432 1233332 112322221
Q ss_pred --HHHHHHHhCCCC---------C--CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHH
Q 030566 59 --LEDVMEELGLGP---------N--GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 59 --~~~~~~~~~l~~---------~--~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
..++++..++.. + ....-..-+.+|+||..++|++.+ +|++++||||+...+....+.+.+.+++
T Consensus 437 ~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~--~~~illLDEpts~LD~~~~~~i~~~L~~ 514 (571)
T TIGR02203 437 AEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK--DAPILILDEATSALDNESERLVQAALER 514 (571)
T ss_pred HHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 112222222211 0 000000123449999999999999 9999999999666556666667777777
Q ss_pred HHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 126 LKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 126 l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
+. +++|+ +++||+.... ..+|+++.++.+..+-
T Consensus 515 ~~-~~~ti----IiitH~~~~~-~~~D~ii~l~~g~i~~ 547 (571)
T TIGR02203 515 LM-QGRTT----LVIAHRLSTI-EKADRIVVMDDGRIVE 547 (571)
T ss_pred Hh-CCCEE----EEEehhhHHH-HhCCEEEEEeCCEEEe
Confidence 64 46899 9999998664 7799999998876553
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=188.89 Aligned_cols=149 Identities=21% Similarity=0.175 Sum_probs=103.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+|+.++|+||||||||||+|+|+|+++|++|+|.++|.+... +.+++.+ .-+.++++.
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~ 426 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDA 426 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHH
Confidence 599999999999999999999999999999999999987532 1222222 223333332
Q ss_pred -HHHHHHHhCCCCCC-----chh----hhH--HHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 -LEDVMEELGLGPNG-----GLI----YCM--EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l~~~~-----~~~----~~~--~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++..++.... ... ... -+.+|+||..++|++.+ +|++++||||+...+.+..+.+.+.+.++
T Consensus 427 ~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~--~~~ililDE~ts~lD~~~~~~i~~~l~~~ 504 (529)
T TIGR02857 427 EIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR--DAPLLLLDEPTAHLDAETEALVTEALRAL 504 (529)
T ss_pred HHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHHHHHHHh
Confidence 12233332222100 000 001 12248999999999999 99999999996665566566666777776
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEe
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
. +++|+ +++||+++.+ +.+|+++.+
T Consensus 505 ~-~~~t~----i~itH~~~~~-~~~d~i~~l 529 (529)
T TIGR02857 505 A-QGRTV----LLVTHRLALA-ERADRIVVL 529 (529)
T ss_pred c-CCCEE----EEEecCHHHH-HhCCEEEeC
Confidence 4 57899 9999999877 568988754
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=159.70 Aligned_cols=165 Identities=18% Similarity=0.119 Sum_probs=120.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc--c-----------cccCCCCccCCcchhccHHHHH----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--A-----------AENFDYPVAMDIRELISLEDVM---- 63 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~--~-----------~~~~~~~~~~~~~~~~~~~~~~---- 63 (175)
+||.++++||+|||||||+|.+.=+.-|.+|+..+.|... . +++++.++ +-+...+..++.
T Consensus 27 ~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvf--qqy~lwphltv~enli 104 (242)
T COG4161 27 EGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVF--QQYNLWPHLTVQENLI 104 (242)
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhh--hhhccCchhHHHHHHH
Confidence 5999999999999999999999999999999999976532 1 12344433 223333333333
Q ss_pred ----------------------HHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHH
Q 030566 64 ----------------------EELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN 121 (175)
Q Consensus 64 ----------------------~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~ 121 (175)
+.+.+........-.-+..++||.+++|+++. +|+++++|||+...+..-...+-+
T Consensus 105 eap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmm--kpqvllfdeptaaldpeitaqvv~ 182 (242)
T COG4161 105 EAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMM--EPQVLLFDEPTAALDPEITAQIVS 182 (242)
T ss_pred hhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhc--CCcEEeecCcccccCHHHHHHHHH
Confidence 33333322211111112237889999999999 999999999954444443445566
Q ss_pred HHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhhhcccc
Q 030566 122 FVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYSFLFH 173 (175)
Q Consensus 122 ~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (175)
++++++..|.|- +++||..+.+.+.++++++|+.|+.|-|++.+-|-+
T Consensus 183 iikel~~tgitq----vivthev~va~k~as~vvyme~g~ive~g~a~~ft~ 230 (242)
T COG4161 183 IIKELAETGITQ----VIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTE 230 (242)
T ss_pred HHHHHHhcCceE----EEEEeehhHHHhhhhheEeeecCeeEeecchhhccC
Confidence 899999999999 999999999999999999999999999998776543
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=160.31 Aligned_cols=154 Identities=15% Similarity=0.127 Sum_probs=115.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||+.+|+||+|||||||+|+++.+++|++|++.+.|+++.. +.++|.. .-++.+++.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr 107 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRR 107 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhccC
Confidence 599999999999999999999999999999999999988532 2222221 113333332
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH-HhCC
Q 030566 59 -----LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL-KSRN 130 (175)
Q Consensus 59 -----~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l-~~~g 130 (175)
....++.++++..- .......+| ++|+.+|.|.+.. -|++|+||||+...+-++...+.+++..+ +++.
T Consensus 108 ~dr~aa~~llar~~l~~~~-L~k~it~lSGGE~QriAliR~Lq~--~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~ 184 (223)
T COG4619 108 PDRAAALDLLARFALPDSI-LTKNITELSGGEKQRIALIRNLQF--MPKILLLDEITSALDESNKRNIEEMIHRYVREQN 184 (223)
T ss_pred CChHHHHHHHHHcCCchhh-hcchhhhccchHHHHHHHHHHhhc--CCceEEecCchhhcChhhHHHHHHHHHHHhhhhc
Confidence 24456666665432 122233444 8999999999999 99999999996666666677787888887 4778
Q ss_pred CcEEEEEeeeccchhhhhcCCCceeEeccch
Q 030566 131 FNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 131 ~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
.++ +-+||+-+++.+.+++++-+..|+
T Consensus 185 vAv----~WiTHd~dqa~rha~k~itl~~G~ 211 (223)
T COG4619 185 VAV----LWITHDKDQAIRHADKVITLQPGH 211 (223)
T ss_pred eEE----EEEecChHHHhhhhheEEEeccCc
Confidence 899 999999999999999888776643
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-24 Score=190.74 Aligned_cols=159 Identities=16% Similarity=0.116 Sum_probs=110.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.++|+|+||||||||+|+|+|+++|++|+|.++|.++.. +.++|.+ .-+.++++.
T Consensus 365 ~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~ 444 (576)
T TIGR02204 365 PGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDE 444 (576)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHH
Confidence 599999999999999999999999999999999999976432 1233332 113333322
Q ss_pred -HHHHHHHhCCC---------CCC--chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 -LEDVMEELGLG---------PNG--GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l~---------~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++..++. .+. ......-+.+|+||..++|++.+ +|++++||||+...+....+.+.+.++++
T Consensus 445 ~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~--~~~ililDEpts~lD~~~~~~i~~~l~~~ 522 (576)
T TIGR02204 445 EVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK--DAPILLLDEATSALDAESEQLVQQALETL 522 (576)
T ss_pred HHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh--CCCeEEEeCcccccCHHHHHHHHHHHHHH
Confidence 12222222221 110 00001123359999999999999 99999999995555555566676777776
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
. +++|+ +++||+.+.. ..+|+++.++.|..+-.++
T Consensus 523 ~-~~~t~----IiitH~~~~~-~~~d~vi~l~~g~~~~~g~ 557 (576)
T TIGR02204 523 M-KGRTT----LIIAHRLATV-LKADRIVVMDQGRIVAQGT 557 (576)
T ss_pred h-CCCEE----EEEecchHHH-HhCCEEEEEECCEEEeeec
Confidence 4 47899 9999999776 5689999998887664433
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-24 Score=189.03 Aligned_cols=156 Identities=15% Similarity=0.017 Sum_probs=109.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCcc------CCcchh---c---cHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA------MDIREL---I---SLED 61 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~------~~~~~~---~---~~~~ 61 (175)
+|+.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+++.+. -+..++ . ...+
T Consensus 348 ~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~ 427 (547)
T PRK10522 348 RGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEK 427 (547)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHHHHH
Confidence 599999999999999999999999999999999999987532 12233221 111121 1 1233
Q ss_pred HHHHhCCCCCCchhh-----hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH-HhCCCcEEE
Q 030566 62 VMEELGLGPNGGLIY-----CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL-KSRNFNVCA 135 (175)
Q Consensus 62 ~~~~~~l~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l-~~~g~tvli 135 (175)
+++.+++........ ..-+..|+||..++|++.+ +|++++||||+...+....+.+.+.+.+. +++++|+
T Consensus 428 ~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~--~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tv-- 503 (547)
T PRK10522 428 WLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAE--ERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTI-- 503 (547)
T ss_pred HHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEE--
Confidence 455555543221100 0123349999999999999 99999999995555555555665566544 3458999
Q ss_pred EEeeeccchhhhhcCCCceeEeccchhh
Q 030566 136 VYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 136 ~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+++||+++.+ ..+|+++.++.|..+
T Consensus 504 --i~itH~~~~~-~~~d~i~~l~~G~i~ 528 (547)
T PRK10522 504 --FAISHDDHYF-IHADRLLEMRNGQLS 528 (547)
T ss_pred --EEEEechHHH-HhCCEEEEEECCEEE
Confidence 9999998654 679999999988755
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-24 Score=166.44 Aligned_cols=159 Identities=16% Similarity=0.143 Sum_probs=111.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC--ccccceeEEeecCccc---------------ccCCCCccCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~--~~~~G~I~i~g~~~~~---------------~~~~~~~~~~~~~~~~----- 58 (175)
+||+++|.||||||||||.++|+|.- ++++|+|.++|+++.. |...-.+..+..+++.
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~ 108 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNA 108 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHh
Confidence 49999999999999999999999985 6899999999998632 1111111222222211
Q ss_pred --------------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030566 59 --------------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 --------------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..+.++.+++.+....+.-..-+| ++.|.-+.+.++. +|++.|||||....+.++...+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~l--ePkl~ILDE~DSGLDIdalk~V~~~ 186 (251)
T COG0396 109 RRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLL--EPKLAILDEPDSGLDIDALKIVAEG 186 (251)
T ss_pred hhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhc--CCCEEEecCCCcCccHHHHHHHHHH
Confidence 233455556554211111111233 6666666777776 9999999999666667778888889
Q ss_pred HHHHHhCCCcEEEEEeeeccchhhhhcCC--CceeEeccchhhHHh
Q 030566 123 VDHLKSRNFNVCAVYLLDSQVCIRFRTLP--PCIVCFCCTHTVVQR 166 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~~~~~~~~--~~~~~~~~~~~~~~~ 166 (175)
+++++++|.++ +++||+-+ +.+++ |++-+|+.|.++--+
T Consensus 187 i~~lr~~~~~~----liITHy~r-ll~~i~pD~vhvl~~GrIv~sG 227 (251)
T COG0396 187 INALREEGRGV----LIITHYQR-LLDYIKPDKVHVLYDGRIVKSG 227 (251)
T ss_pred HHHHhcCCCeE----EEEecHHH-HHhhcCCCEEEEEECCEEEecC
Confidence 99999999999 99999855 55666 888888888776544
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-24 Score=187.82 Aligned_cols=156 Identities=15% Similarity=0.079 Sum_probs=109.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCcc------CCcchhcc-------HH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA------MDIRELIS-------LE 60 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~------~~~~~~~~-------~~ 60 (175)
+|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.+. -+.+++.. ..
T Consensus 367 ~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~ 446 (555)
T TIGR01194 367 QGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQ 446 (555)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHHHH
Confidence 599999999999999999999999999999999999987542 12222221 11222111 23
Q ss_pred HHHHHhCCCCCCchh------hhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHH-HHHHHHhCCCcE
Q 030566 61 DVMEELGLGPNGGLI------YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN-FVDHLKSRNFNV 133 (175)
Q Consensus 61 ~~~~~~~l~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~-~l~~l~~~g~tv 133 (175)
++++..++....... ...-+-+|+||..++|++.. +|+++|||||+...+....+.+.+ +++.++.+++|+
T Consensus 447 ~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~--~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~ti 524 (555)
T TIGR01194 447 QYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLE--DRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTI 524 (555)
T ss_pred HHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 455555554322110 01123349999999999999 999999999955554554555544 344455568999
Q ss_pred EEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 134 CAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 134 li~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+++||+++.+ +.+|+++.++.|..+
T Consensus 525 ----iiisH~~~~~-~~~d~i~~l~~G~i~ 549 (555)
T TIGR01194 525 ----IIISHDDQYF-ELADQIIKLAAGCIV 549 (555)
T ss_pred ----EEEeccHHHH-HhCCEEEEEECCEEE
Confidence 9999999865 689999999887643
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-24 Score=194.47 Aligned_cols=150 Identities=14% Similarity=0.030 Sum_probs=104.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCc-----cCCcchh--------c------cHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPV-----AMDIREL--------I------SLED 61 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~-----~~~~~~~--------~------~~~~ 61 (175)
+|++++|+||||||||||+|+|+|+++|++|+|.+++.. .++|.+ .++.... + ....
T Consensus 534 ~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~----~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 609 (718)
T PLN03073 534 LDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKV----RMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 609 (718)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCce----eEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHH
Confidence 499999999999999999999999999999999976431 011111 0000000 0 1244
Q ss_pred HHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeee
Q 030566 62 VMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (175)
Q Consensus 62 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~ 140 (175)
+++.+++... .......-+..+++|..+++++.. +|++||||||+...+....+.+.+.+.++ +.|| +++
T Consensus 610 ~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~--~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~gtv----Iiv 680 (718)
T PLN03073 610 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK--KPHILLLDEPSNHLDLDAVEALIQGLVLF---QGGV----LMV 680 (718)
T ss_pred HHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCEE----EEE
Confidence 5666666421 111222223448999999999999 99999999995554444444444444432 3488 999
Q ss_pred ccchhhhhcCCCceeEeccchhh
Q 030566 141 SQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 141 sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
||+++++..+|++++++..+..+
T Consensus 681 SHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 681 SHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred ECCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999988765
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-24 Score=178.19 Aligned_cols=165 Identities=19% Similarity=0.184 Sum_probs=128.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccc-------------------cCCCCccCCcchhcc---
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------------------NFDYPVAMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~-------------------~~~~~~~~~~~~~~~--- 58 (175)
.|+.+||+|++|||||||-.+|.+++++. |+|.+.|.++... .-++.|.+++.+.+.
T Consensus 312 ~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL 390 (534)
T COG4172 312 RGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGL 390 (534)
T ss_pred CCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhh
Confidence 48999999999999999999999999875 9999999875321 112223333333332
Q ss_pred ---------------HHHHHHHhCCCCCCchhhhHHH-HHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030566 59 ---------------LEDVMEELGLGPNGGLIYCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..++++++++++......+.+- -.|+||.++||++.. +|++++||||+...+.+-...+..+
T Consensus 391 ~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliL--kP~~i~LDEPTSALD~SVQaQvv~L 468 (534)
T COG4172 391 RVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALIL--KPELILLDEPTSALDRSVQAQVLDL 468 (534)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhc--CCcEEEecCCchHhhHHHHHHHHHH
Confidence 3467888898877655554432 239999999999999 9999999999555555555567779
Q ss_pred HHHHH-hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhhhccc
Q 030566 123 VDHLK-SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYSFLF 172 (175)
Q Consensus 123 l~~l~-~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (175)
+++++ +.|.+- +++|||+..+.-+|+++++|..|.+|-|+...--|
T Consensus 469 Lr~LQ~k~~LsY----LFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 469 LRDLQQKHGLSY----LFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred HHHHHHHhCCeE----EEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHh
Confidence 99986 458888 99999999999999999999999999988765444
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-24 Score=178.81 Aligned_cols=153 Identities=22% Similarity=0.109 Sum_probs=113.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhcc---------------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELIS--------------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~--------------- 58 (175)
+||.+|||||+|||||||.|+|.|..+|.+|.|++||-+... +.++|.| +.-+.|.
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLP--QdVeLF~GTIaeNIaRf~~~~d 438 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLP--QDVELFDGTIAENIARFGEEAD 438 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCc--ccceecCCcHHHHHHhccccCC
Confidence 499999999999999999999999999999999999987643 3456666 3333332
Q ss_pred HHHHHH------------HhCCCCCCchhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHH
Q 030566 59 LEDVME------------ELGLGPNGGLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 ~~~~~~------------~~~l~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..++.+ .+.-+.+-....... +..||||..|+|++.. +|.+++||||....+..+...+.+.+.
T Consensus 439 ~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG--~P~lvVLDEPNsNLD~~GE~AL~~Ai~ 516 (580)
T COG4618 439 PEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYG--DPFLVVLDEPNSNLDSEGEAALAAAIL 516 (580)
T ss_pred HHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcC--CCcEEEecCCCCCcchhHHHHHHHHHH
Confidence 111221 111111100011112 2349999999999999 999999999977766777777888899
Q ss_pred HHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchh
Q 030566 125 HLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHT 162 (175)
Q Consensus 125 ~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~ 162 (175)
+.+++|.|+ +++||+.. +...+|.+.+|..|..
T Consensus 517 ~~k~rG~~v----vviaHRPs-~L~~~Dkilvl~~G~~ 549 (580)
T COG4618 517 AAKARGGTV----VVIAHRPS-ALASVDKILVLQDGRI 549 (580)
T ss_pred HHHHcCCEE----EEEecCHH-HHhhcceeeeecCChH
Confidence 999999999 99999987 4577899999988753
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-24 Score=194.35 Aligned_cols=157 Identities=17% Similarity=0.114 Sum_probs=116.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccc-------cCCCCccCCcchhccHHHHHHHhCCCCCCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDYPVAMDIRELISLEDVMEELGLGPNGG 73 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (175)
.|++++|+|||||||||++++|.+++.|++|+|.++|.+++.- .++.+. +.+ .+...++.||+.++....
T Consensus 378 ~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~--QeP-vlF~~tI~eNI~~G~~da 454 (1228)
T KOG0055|consen 378 SGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVS--QEP-VLFATTIRENIRYGKPDA 454 (1228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeee--ech-hhhcccHHHHHhcCCCcc
Confidence 4999999999999999999999999999999999999987542 223222 111 222334444444443211
Q ss_pred hhh------------------------------hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 74 LIY------------------------------CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 74 ~~~------------------------------~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
... ..-+-.||||.++||++.+ +|++|+||||+...+......+++.|
T Consensus 455 t~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~--~P~ILLLDEaTSaLD~~se~~Vq~AL 532 (1228)
T KOG0055|consen 455 TREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVR--NPKILLLDEATSALDAESERVVQEAL 532 (1228)
T ss_pred cHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHh--CCCEEEecCcccccCHHHHHHHHHHH
Confidence 000 0112348999999999999 99999999995555555566667777
Q ss_pred HHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
+.. .+|+|. ++++|++..+.+ +|++++++.|+.|-+++-
T Consensus 533 d~~-~~grTT----ivVaHRLStIrn-aD~I~v~~~G~IvE~G~h 571 (1228)
T KOG0055|consen 533 DKA-SKGRTT----IVVAHRLSTIRN-ADKIAVMEEGKIVEQGTH 571 (1228)
T ss_pred HHh-hcCCeE----EEEeeehhhhhc-cCEEEEEECCEEEEecCH
Confidence 776 458899 999999999988 999999999998876653
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.6e-24 Score=157.99 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=115.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------------ccCCCCccCCcchhcc------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------------ENFDYPVAMDIRELIS------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------------~~~~~~~~~~~~~~~~------ 58 (175)
+|+.+++||.||||||||.|+|+|+++|++|+|.++|.+..- .+.++.|.++....+.
T Consensus 38 ~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~ 117 (267)
T COG4167 38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLN 117 (267)
T ss_pred CCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhc
Confidence 589999999999999999999999999999999999976421 2223333332222221
Q ss_pred -----------HHHHHHHhCCCCCCchhh-hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIY-CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..+-+..+++.+...... ..-+.+++||++++|++.- +|+++|.||.-...++.-+-.+.++.-++
T Consensus 118 T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL--~P~iIIaDeAl~~LD~smrsQl~NL~LeL 195 (267)
T COG4167 118 TDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALIL--RPKIIIADEALASLDMSMRSQLINLMLEL 195 (267)
T ss_pred ccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhc--CCcEEEehhhhhhccHHHHHHHHHHHHHH
Confidence 234455567666543222 2234469999999999999 99999999993333333333445566666
Q ss_pred Hh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++ .|.+- +.+++++-.+-.++|.+++|+.|.+|--+
T Consensus 196 Qek~GiSy----iYV~QhlG~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 196 QEKQGISY----IYVTQHIGMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred HHHhCceE----EEEechhhHhhhhcccEEEEecCceeecC
Confidence 54 58887 99999999999999999999999877443
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-24 Score=202.15 Aligned_cols=161 Identities=14% Similarity=0.099 Sum_probs=119.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc---cccceeEEeecCccc---ccCCCC-------ccCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA---ENFDYP-------VAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~---~~~G~I~i~g~~~~~---~~~~~~-------~~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+++|+|+.+ |++|+|.++|.+... +.++|. +..++++++.
T Consensus 788 ~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~ 867 (1394)
T TIGR00956 788 PGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPK 867 (1394)
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCC
Confidence 499999999999999999999999997 788999999976521 122332 2234444332
Q ss_pred ----------HHHHHHHhCCCCCCchhhh----HHHHHHHHHHHHHHHhhccCCCC-EEEEeCCCcccccccchHHHHHH
Q 030566 59 ----------LEDVMEELGLGPNGGLIYC----MEHLEDNLDDWLAEELDNYLDDD-YLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 59 ----------~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~p~-lliLDEP~~~~~~~~~~~~~~~l 123 (175)
..++++.+++......... .-+..|++|..+++++.. +|+ +++||||+...+......+.+.|
T Consensus 868 ~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~--~P~~iLlLDEPTsgLD~~~~~~i~~~L 945 (1394)
T TIGR00956 868 SVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVA--KPKLLLFLDEPTSGLDSQTAWSICKLM 945 (1394)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHc--CCCeEEEEcCCCCCCCHHHHHHHHHHH
Confidence 1234555555432211111 123448999999999999 997 99999996666667777888899
Q ss_pred HHHHhCCCcEEEEEeeeccchhh-hhcCCCceeEeccc-hhhHHhh
Q 030566 124 DHLKSRNFNVCAVYLLDSQVCIR-FRTLPPCIVCFCCT-HTVVQRA 167 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~-~~~~~~~~~~~~~~-~~~~~~~ 167 (175)
++++++|.|| ++++|+++. +.+.+|+++++..| ..++++.
T Consensus 946 ~~la~~g~tv----I~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 946 RKLADHGQAI----LCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred HHHHHcCCEE----EEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 9998889999 999999986 45789999999986 7777654
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-24 Score=194.18 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=121.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCccC-------Ccchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPVAM-------DIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~~~-------~~~~~~~------- 58 (175)
+|||.|++|+|||||||++|+++|..+|++|++.+.|.+... +.++|.|.. +.++.+.
T Consensus 590 ~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG 669 (885)
T KOG0059|consen 590 PGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRG 669 (885)
T ss_pred CCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcC
Confidence 599999999999999999999999999999999999987643 346777632 3333332
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC
Q 030566 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
....++.+++.+.........+-.++.|...+.++.. +|++++||||+...+..++..+|.++.+++++
T Consensus 670 ~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig--~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~ 747 (885)
T KOG0059|consen 670 LPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIG--DPSVILLDEPSTGLDPKARRHLWDIIARLRKN 747 (885)
T ss_pred CChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhc--CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 1334455555544433333233346777888888888 99999999997777778888999999999888
Q ss_pred CCcEEEEEeeeccchhhhhcCCCceeEeccchh
Q 030566 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHT 162 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~ 162 (175)
|++| +++||.++|++-+|+|+.+|..|.-
T Consensus 748 g~ai----iLTSHsMeE~EaLCtR~aImv~G~l 776 (885)
T KOG0059|consen 748 GKAI----ILTSHSMEEAEALCTRTAIMVIGQL 776 (885)
T ss_pred CCEE----EEEcCCHHHHHHHhhhhheeecCee
Confidence 7799 9999999999999999999988753
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.9e-24 Score=199.24 Aligned_cols=161 Identities=15% Similarity=0.096 Sum_probs=119.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc--cccceeEEeecCccc----ccCCCC-------ccCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDPAA----ENFDYP-------VAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~--~~~G~I~i~g~~~~~----~~~~~~-------~~~~~~~~~~--------- 58 (175)
+|++++|+||||||||||+++|+|..+ +.+|+|.++|.+... +..+|. +.+++++.+.
T Consensus 905 ~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~ 984 (1470)
T PLN03140 905 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPK 984 (1470)
T ss_pred CCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCC
Confidence 499999999999999999999999976 378999999976431 112222 2234443332
Q ss_pred ----------HHHHHHHhCCCCCCchhh-----hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 59 ----------LEDVMEELGLGPNGGLIY-----CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 59 ----------~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
..++++.+++........ ..-+.+|++|..+++++.. +|++++||||+...+......+.+.|
T Consensus 985 ~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~--~P~lL~LDEPTsgLD~~~a~~v~~~L 1062 (1470)
T PLN03140 985 EVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVA--NPSIIFMDEPTSGLDARAAAIVMRTV 1062 (1470)
T ss_pred CCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 123555555543221111 1123458999999999999 99999999996666667777888899
Q ss_pred HHHHhCCCcEEEEEeeeccchh-hhhcCCCceeEecc-chhhHHhh
Q 030566 124 DHLKSRNFNVCAVYLLDSQVCI-RFRTLPPCIVCFCC-THTVVQRA 167 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~-~~~~~~~~~~~~~~-~~~~~~~~ 167 (175)
++++++|.|| ++++|+++ ++.+.+|++++|+. |+.++++.
T Consensus 1063 ~~l~~~g~tV----I~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~ 1104 (1470)
T PLN03140 1063 RNTVDTGRTV----VCTIHQPSIDIFEAFDELLLMKRGGQVIYSGP 1104 (1470)
T ss_pred HHHHHCCCEE----EEEeCCCCHHHHHhCCEEEEEcCCCEEEEECC
Confidence 9998889999 99999998 57889999999985 77776654
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-23 Score=199.24 Aligned_cols=151 Identities=13% Similarity=0.082 Sum_probs=110.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEe-ecCccc-------ccCCCCccCCcchhccHHHHHHHhCCCCCC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-NLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNG 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~-g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 72 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++ |.++.. +.+++++ +....|. .++.+++.++...
T Consensus 410 ~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~--Q~~~LF~-~TI~eNI~~g~~~ 486 (1466)
T PTZ00265 410 EGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVS--QDPLLFS-NSIKNNIKYSLYS 486 (1466)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEec--ccccchh-ccHHHHHHhcCCC
Confidence 599999999999999999999999999999999995 555421 2344444 2222222 2444444332100
Q ss_pred --------------------------------------------------------------------------------
Q 030566 73 -------------------------------------------------------------------------------- 72 (175)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (175)
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp 566 (1466)
T PTZ00265 487 LKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALP 566 (1466)
T ss_pred ccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCc
Confidence
Q ss_pred -------chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCCcEEEEEeeeccch
Q 030566 73 -------GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQVC 144 (175)
Q Consensus 73 -------~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~ 144 (175)
......-+..|+||..|+|++.. +|++||||||+...+......+.+.|+++++ +|+|+ +++||++
T Consensus 567 ~g~dT~vg~~g~~LSGGQkQRiaIARAll~--~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~Tv----IiIsHrl 640 (1466)
T PTZ00265 567 DKYETLVGSNASKLSGGQKQRISIARAIIR--NPKILILDEATSSLDNKSEYLVQKTINNLKGNENRIT----IIIAHRL 640 (1466)
T ss_pred cccCceeCCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEE----EEEeCCH
Confidence 00000112248999999999999 9999999999666666666777888888865 58999 9999999
Q ss_pred hhhhcCCCceeEeccch
Q 030566 145 IRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 145 ~~~~~~~~~~~~~~~~~ 161 (175)
+.+ +.+|++++|+.|.
T Consensus 641 s~i-~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 641 STI-RYANTIFVLSNRE 656 (1466)
T ss_pred HHH-HhCCEEEEEeCCc
Confidence 987 6899999998863
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-23 Score=154.86 Aligned_cols=141 Identities=16% Similarity=0.065 Sum_probs=104.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccc-------------cCCCCccCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------------NFDYPVAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~-------------~~~~~~~~~~~~~~~--------- 58 (175)
.||++.|.||||||||||+|+|+|+.+|++|+|.+.|.++... ..+....++..+++.
T Consensus 27 ~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~ 106 (209)
T COG4133 27 AGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSG 106 (209)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCC
Confidence 3899999999999999999999999999999999998765431 233444556666654
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEE
Q 030566 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVC 134 (175)
Q Consensus 59 ----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvl 134 (175)
..+.++.+++..........-+..|+.|.+++|-... .+|+=|||||....+..+...+..++..-..+|.-|
T Consensus 107 ~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls--~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiV- 183 (209)
T COG4133 107 NAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLS--PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIV- 183 (209)
T ss_pred chhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcC--CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEE-
Confidence 2455666676655433332223348888999998888 999999999955555556666777777766678778
Q ss_pred EEEeeeccchhhh
Q 030566 135 AVYLLDSQVCIRF 147 (175)
Q Consensus 135 i~~l~~sH~~~~~ 147 (175)
+.+||..--+
T Consensus 184 ---llttHq~l~~ 193 (209)
T COG4133 184 ---LLTTHQPLPI 193 (209)
T ss_pred ---EEecCCccCC
Confidence 9999986554
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.7e-24 Score=183.60 Aligned_cols=137 Identities=19% Similarity=0.133 Sum_probs=92.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------ccCCCCc------cCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDYPV------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~~~~------~~~~~~~~~---------- 58 (175)
+||.++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ .-+.++++.
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~ 439 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEE 439 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHH
Confidence 599999999999999999999999999999999999977542 1233332 113333332
Q ss_pred HHHHHHHhCCCCCC-----chhh------hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 LEDVMEELGLGPNG-----GLIY------CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 ~~~~~~~~~l~~~~-----~~~~------~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++..++.... .... ..-+.+|+||..+||++.+ +|++++||||+...+....+.+.+.+.++
T Consensus 440 i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~--~~~iliLDE~TSaLD~~te~~I~~~l~~~- 516 (529)
T TIGR02868 440 LWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA--DAPILLLDEPTEHLDAGTESELLEDLLAA- 516 (529)
T ss_pred HHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHHHHh-
Confidence 12233322221100 0000 0112348999999999999 99999999995555555555566666654
Q ss_pred hCCCcEEEEEeeeccch
Q 030566 128 SRNFNVCAVYLLDSQVC 144 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~ 144 (175)
.+++|+ +++||++
T Consensus 517 ~~~~Tv----IiItHrl 529 (529)
T TIGR02868 517 LSGKTV----VVITHHL 529 (529)
T ss_pred cCCCEE----EEEecCC
Confidence 357899 9999974
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-23 Score=198.16 Aligned_cols=159 Identities=15% Similarity=0.089 Sum_probs=111.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.+||+|++|||||||+++|.|+++|++|+|.++|.++.. +.+++.+ .-+.++++.
T Consensus 1261 ~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdee 1340 (1495)
T PLN03232 1261 PSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDAD 1340 (1495)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHH
Confidence 599999999999999999999999999999999999988642 1223222 123444332
Q ss_pred HHHHHHHhCCCC---------CCchhhh--HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 LEDVMEELGLGP---------NGGLIYC--MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 ~~~~~~~~~l~~---------~~~~~~~--~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++..++.. +-..... .-+.+|+|+..+||++.+ +|++++||||+...+......+.+.+++.
T Consensus 1341 i~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr--~~~ILILDEATSaLD~~Te~~Iq~~L~~~- 1417 (1495)
T PLN03232 1341 LWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR--RSKILVLDEATASVDVRTDSLIQRTIREE- 1417 (1495)
T ss_pred HHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHHHHHHHH-
Confidence 122333322211 0000000 123359999999999999 99999999995555555555666667665
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.+++|+ ++++|+++.+.+ +|++++|+.|+.+-+++
T Consensus 1418 ~~~~Tv----I~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt 1452 (1495)
T PLN03232 1418 FKSCTM----LVIAHRLNTIID-CDKILVLSSGQVLEYDS 1452 (1495)
T ss_pred cCCCEE----EEEeCCHHHHHh-CCEEEEEECCEEEEECC
Confidence 357999 999999998876 89999999888764433
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-23 Score=197.35 Aligned_cols=158 Identities=15% Similarity=0.081 Sum_probs=111.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.+||+|++|||||||+++|.|+++|++|+|.++|.++.. +.+++.+ .-+.++++.
T Consensus 1264 ~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdee 1343 (1622)
T PLN03130 1264 PSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDAD 1343 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHH
Confidence 499999999999999999999999999999999999988643 2233322 113343332
Q ss_pred HHHHHHHhCCC---------CCCchhhh--HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 LEDVMEELGLG---------PNGGLIYC--MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 ~~~~~~~~~l~---------~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++..++. .+-..... .-+.+|+|+..|||++.+ +|++|+||||+...+......+.+.|++..
T Consensus 1344 i~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr--~p~ILILDEATSaLD~~Te~~Iq~~I~~~~ 1421 (1622)
T PLN03130 1344 LWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR--RSKILVLDEATAAVDVRTDALIQKTIREEF 1421 (1622)
T ss_pred HHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHHHHHHHHC
Confidence 12223322221 11000000 123349999999999999 999999999955555555556666777653
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++|+ ++++|+++.+.+ +|++++|+.|.++-++
T Consensus 1422 -~~~Tv----I~IAHRL~tI~~-~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130 1422 -KSCTM----LIIAHRLNTIID-CDRILVLDAGRVVEFD 1454 (1622)
T ss_pred -CCCEE----EEEeCChHHHHh-CCEEEEEECCEEEEeC
Confidence 47999 999999999876 7999999998876443
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-23 Score=174.91 Aligned_cols=161 Identities=14% Similarity=0.065 Sum_probs=110.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccc-------cCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~-------~~~~~~------~~~~~~~~~--------- 58 (175)
.||-++|+|++|||||||+..++|.++|++|+|.++|.++..- .+++.. .-+.++++.
T Consensus 363 ~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDE 442 (573)
T COG4987 363 QGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDE 442 (573)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHH
Confidence 4999999999999999999999999999999999999876431 122221 112333332
Q ss_pred -HHHHHHHhCCCCCC---------chhhh--HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 -LEDVMEELGLGPNG---------GLIYC--MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l~~~~---------~~~~~--~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
...+++.+++.... ..... .-+-.+++|..|+|.+.+ |.|+++||||+...+......+.+++.+-
T Consensus 443 el~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~--dapl~lLDEPTegLD~~TE~~vL~ll~~~ 520 (573)
T COG4987 443 ELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH--DAPLWLLDEPTEGLDPITERQVLALLFEH 520 (573)
T ss_pred HHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHc--CCCeEEecCCcccCChhhHHHHHHHHHHH
Confidence 12233333332110 00001 112348899999999999 99999999994443333333344455443
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYS 169 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (175)
-+|+|+ +++||++..+ +.+|+|+++++|..+-+++|.
T Consensus 521 -~~~kTl----l~vTHrL~~l-e~~drIivl~~Gkiie~G~~~ 557 (573)
T COG4987 521 -AEGKTL----LMVTHRLRGL-ERMDRIIVLDNGKIIEEGTHA 557 (573)
T ss_pred -hcCCeE----EEEecccccH-hhcCEEEEEECCeeeecCCHH
Confidence 358999 9999999988 556999999999888777764
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-23 Score=182.17 Aligned_cols=149 Identities=11% Similarity=0.057 Sum_probs=99.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc---ccccCCCCccCCcchhcc-----------------HH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAENFDYPVAMDIRELIS-----------------LE 60 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~---~~~~~~~~~~~~~~~~~~-----------------~~ 60 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.+++... -.++....+ .+.++++. ..
T Consensus 477 ~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~ 555 (659)
T TIGR00954 477 SGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTL-GTLRDQIIYPDSSEDMKRRGLSDKDLE 555 (659)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCC-cCHHHHHhcCCChhhhhccCCCHHHHH
Confidence 5999999999999999999999999999999998864320 011111111 12222221 23
Q ss_pred HHHHHhCCCCCCchh---------hhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCC
Q 030566 61 DVMEELGLGPNGGLI---------YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 61 ~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
++++.+++....... ...-+.+|+||..++|++.+ +|++++||||+...+....+.+.+.+ ++.|.
T Consensus 556 ~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~--~p~illLDEpts~LD~~~~~~l~~~l---~~~~~ 630 (659)
T TIGR00954 556 QILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYH--KPQFAILDECTSAVSVDVEGYMYRLC---REFGI 630 (659)
T ss_pred HHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHHHHH---HHcCC
Confidence 445555543221110 01123348999999999999 99999999994444444344444444 34588
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccc
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
|+ +++||+++.+ +++|+++.+++.
T Consensus 631 tv----I~isH~~~~~-~~~d~il~l~~~ 654 (659)
T TIGR00954 631 TL----FSVSHRKSLW-KYHEYLLYMDGR 654 (659)
T ss_pred EE----EEEeCchHHH-HhCCEEEEEeCC
Confidence 99 9999999986 779999999753
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-23 Score=195.84 Aligned_cols=161 Identities=13% Similarity=0.072 Sum_probs=117.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC----ccccceeEEeecCccc------ccCCCC-------ccCCcchhccH----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC----ETVRRTMHIVNLDPAA------ENFDYP-------VAMDIRELISL---- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~----~~~~G~I~i~g~~~~~------~~~~~~-------~~~~~~~~~~~---- 59 (175)
+||+++|+||||||||||+|+|+|+. +|++|+|.++|.++.. ..++|. +.+++++.+..
T Consensus 86 ~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~ 165 (1394)
T TIGR00956 86 PGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARC 165 (1394)
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHh
Confidence 49999999999999999999999986 5789999999976421 112222 22333332211
Q ss_pred --------------------HHHHHHhCCCCCCchhh-----hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccc
Q 030566 60 --------------------EDVMEELGLGPNGGLIY-----CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFT 114 (175)
Q Consensus 60 --------------------~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~ 114 (175)
..+++.+++........ ..-+.+|++|..+++++.. +|++++||||+...+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~--~p~vlllDEPTsgLD~~ 243 (1394)
T TIGR00956 166 KTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLG--GAKIQCWDNATRGLDSA 243 (1394)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHh--CCCEEEEeCCCCCcCHH
Confidence 12344455543221111 1112338999999999999 99999999997776677
Q ss_pred cchHHHHHHHHHHh-CCCcEEEEEeeeccch-hhhhcCCCceeEeccchhhHHhh
Q 030566 115 HVPVLRNFVDHLKS-RNFNVCAVYLLDSQVC-IRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 115 ~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~-~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
....+.+.|+++++ .|.|| ++++|+. +++.+++|+++++..|..++++.
T Consensus 244 ~~~~i~~~L~~la~~~g~tv----ii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 244 TALEFIRALKTSANILDTTP----LVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred HHHHHHHHHHHHHHhcCCEE----EEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 77788889999976 48999 9999996 78999999999999998877644
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-23 Score=195.27 Aligned_cols=152 Identities=16% Similarity=0.113 Sum_probs=106.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc----------------------------------------------------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET---------------------------------------------------- 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~---------------------------------------------------- 28 (175)
+|+++||+||||||||||+++|+|+++|
T Consensus 1193 ~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1272 (1466)
T PTZ00265 1193 SKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTV 1272 (1466)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5999999999999999999999999998
Q ss_pred --ccceeEEeecCccc-------ccCCCCc------cCCcchhcc----------HHHHHHHhCCCC---------C--C
Q 030566 29 --VRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS----------LEDVMEELGLGP---------N--G 72 (175)
Q Consensus 29 --~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~----------~~~~~~~~~l~~---------~--~ 72 (175)
++|+|.++|.+++. +.+++++ ..+.++++. ...+++..++.. . .
T Consensus 1273 ~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~V 1352 (1466)
T PTZ00265 1273 FKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNV 1352 (1466)
T ss_pred CCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCcc
Confidence 69999999988643 2344433 223333332 111122111110 0 0
Q ss_pred chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH-hCCCcEEEEEeeeccchhhhhcCC
Q 030566 73 GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQVCIRFRTLP 151 (175)
Q Consensus 73 ~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-~~g~tvli~~l~~sH~~~~~~~~~ 151 (175)
...-..-+.+|+||.+|||++.+ +|++||||||+...+......+.+.|.++. .+++|+ ++++|+++.+ +.+
T Consensus 1353 Ge~G~~LSGGQkQRIaIARALlr--~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~Tv----IiIaHRlsti-~~a 1425 (1466)
T PTZ00265 1353 GPYGKSLSGGQKQRIAIARALLR--EPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTI----ITIAHRIASI-KRS 1425 (1466)
T ss_pred CCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEE----EEEechHHHH-HhC
Confidence 00000122349999999999999 999999999955555555556667777775 368999 9999999877 458
Q ss_pred CceeEecc
Q 030566 152 PCIVCFCC 159 (175)
Q Consensus 152 ~~~~~~~~ 159 (175)
|++++++.
T Consensus 1426 D~Ivvl~~ 1433 (1466)
T PTZ00265 1426 DKIVVFNN 1433 (1466)
T ss_pred CEEEEEeC
Confidence 99999998
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-23 Score=184.14 Aligned_cols=159 Identities=15% Similarity=0.165 Sum_probs=106.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC---ccccceeEEeecCccccc---------------------CCCCcc------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC---ETVRRTMHIVNLDPAAEN---------------------FDYPVA------ 50 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~---~~~~G~I~i~g~~~~~~~---------------------~~~~~~------ 50 (175)
+|+++||+||||||||||+|+|+|.. .|++|+|.+.++.+.... .++.+.
T Consensus 202 ~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~ 281 (718)
T PLN03073 202 FGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEF 281 (718)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 49999999999999999999999864 578999987554321100 000000
Q ss_pred --CC-----------cchhc---------------------cHHHHHHHhCCCCCCchhhhHHHH--HHHHHHHHHHHhh
Q 030566 51 --MD-----------IRELI---------------------SLEDVMEELGLGPNGGLIYCMEHL--EDNLDDWLAEELD 94 (175)
Q Consensus 51 --~~-----------~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~l~~~l~ 94 (175)
.. ..+.. ....+++.+++.... .......+ .+++|..|++++.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~-~~~~~~~LSgG~k~rv~LA~aL~ 360 (718)
T PLN03073 282 ETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEM-QVKATKTFSGGWRMRIALARALF 360 (718)
T ss_pred cccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHH-HhCchhhCCHHHHHHHHHHHHHh
Confidence 00 00000 011233334443111 11122333 4899999999999
Q ss_pred ccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhh-HHhhhh
Q 030566 95 NYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV-VQRAYS 169 (175)
Q Consensus 95 ~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 169 (175)
. +|++|+||||+...+..+..++.++|+++ +.|| +++||+.+++..+|++++++..+..+ +.++|.
T Consensus 361 ~--~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tv----iivsHd~~~l~~~~d~i~~l~~g~i~~~~g~~~ 427 (718)
T PLN03073 361 I--EPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTF----IVVSHAREFLNTVVTDILHLHGQKLVTYKGDYD 427 (718)
T ss_pred c--CCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEE----EEEECCHHHHHHhCCEEEEEECCEEEEeCCCHH
Confidence 9 99999999996666666666777777665 6799 99999999999999999999988764 444444
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-22 Score=176.99 Aligned_cols=159 Identities=18% Similarity=0.101 Sum_probs=111.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccc-------cCCCCc------cCCcchhcc-------H-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDYPV------AMDIRELIS-------L- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~-------~~~~~~------~~~~~~~~~-------~- 59 (175)
.||++||+||||+||||+.+.|..++.|++|+|.+||.|+++- .++++. .-++.+++. .
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e 572 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDE 572 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHH
Confidence 4999999999999999999999999999999999999987542 222221 113333332 1
Q ss_pred -----------HHHHHHhCCCCCCchhhh--HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 60 -----------EDVMEELGLGPNGGLIYC--MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 60 -----------~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
.+...++.-+.+-.-... .-+-.||||.+||||+.+ +|.+|||||.+...+.+....+++.+.++
T Consensus 573 ~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr--~P~VLILDEATSALDaeSE~lVq~aL~~~ 650 (716)
T KOG0058|consen 573 EIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLR--NPRVLILDEATSALDAESEYLVQEALDRL 650 (716)
T ss_pred HHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhc--CCCEEEEechhhhcchhhHHHHHHHHHHh
Confidence 112222211111000001 112349999999999999 99999999995544455455566667665
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.+ ++|| +++.|++.-+ +.+|+|++++.|.++-+++
T Consensus 651 ~~-~rTV----lvIAHRLSTV-~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 651 MQ-GRTV----LVIAHRLSTV-RHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred hc-CCeE----EEEehhhhHh-hhccEEEEEcCCeEEeccc
Confidence 44 5999 9999999988 6789999999999887764
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-22 Score=157.86 Aligned_cols=78 Identities=13% Similarity=-0.020 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhhccCCC--CEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEe
Q 030566 80 HLEDNLDDWLAEELDNYLDD--DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p--~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
+..++|+..+++++.. +| ++++||||+...+....+.+.+++++++++|.|+ +++||+++++ .+||+++++
T Consensus 139 SgG~~qrv~laral~~--~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~ti----i~itH~~~~~-~~~d~i~~l 211 (226)
T cd03270 139 SGGEAQRIRLATQIGS--GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTV----LVVEHDEDTI-RAADHVIDI 211 (226)
T ss_pred CHHHHHHHHHHHHHHh--CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEE----EEEEeCHHHH-HhCCEEEEe
Confidence 3348999999999998 87 5999999966666667778888899887789999 9999999987 589999999
Q ss_pred ------ccchhhH
Q 030566 158 ------CCTHTVV 164 (175)
Q Consensus 158 ------~~~~~~~ 164 (175)
+.|..+.
T Consensus 212 ~~~~~~~~G~iv~ 224 (226)
T cd03270 212 GPGAGVHGGEIVA 224 (226)
T ss_pred CCCccccCCEEEe
Confidence 5555443
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-23 Score=194.52 Aligned_cols=161 Identities=14% Similarity=0.079 Sum_probs=116.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccc---cceeEEeecCccc----ccCCCC-------ccCCcchhccH-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA----ENFDYP-------VAMDIRELISL------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~---~G~I~i~g~~~~~----~~~~~~-------~~~~~~~~~~~------- 59 (175)
+||+++|+||||||||||+|+|+|..+|+ +|+|.++|.+... +.++|. +.+++++.+..
T Consensus 190 ~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~ 269 (1470)
T PLN03140 190 PSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGV 269 (1470)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCC
Confidence 49999999999999999999999999998 9999999976421 112222 22333332221
Q ss_pred -------------------------------------------HHHHHHhCCCCCCch---hhhHHHH--HHHHHHHHHH
Q 030566 60 -------------------------------------------EDVMEELGLGPNGGL---IYCMEHL--EDNLDDWLAE 91 (175)
Q Consensus 60 -------------------------------------------~~~~~~~~l~~~~~~---~~~~~~~--~~~~~~~l~~ 91 (175)
..+++.+++...... ......+ .|++|..+++
T Consensus 270 ~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~ 349 (1470)
T PLN03140 270 GTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGE 349 (1470)
T ss_pred CCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehh
Confidence 123344444321100 0011123 3888899999
Q ss_pred HhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCCcEEEEEeeeccch-hhhhcCCCceeEeccchhhHHhh
Q 030566 92 ELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQVC-IRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 92 ~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~-~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++.. +|+++++|||+...+......+.+.|+++++ .|.|+ ++++|+. .++.+++|++++|..|+.++++.
T Consensus 350 aL~~--~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tv----iis~Hqp~~~i~~lfD~vilL~~G~ivy~G~ 421 (1470)
T PLN03140 350 MIVG--PTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATV----LMSLLQPAPETFDLFDDIILLSEGQIVYQGP 421 (1470)
T ss_pred hhcC--CCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEE----EEEecCCCHHHHHHhheEEEeeCceEEEeCC
Confidence 9999 9999999999666666667777789999865 58999 9999986 68999999999999999887754
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-22 Score=174.63 Aligned_cols=161 Identities=16% Similarity=0.093 Sum_probs=112.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC-c--ccccC-CCCccCCcchh----------ccHHHHHHHh
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENF-DYPVAMDIREL----------ISLEDVMEEL 66 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~--~~~~~-~~~~~~~~~~~----------~~~~~~~~~~ 66 (175)
.|+.+||+||||+|||||+|+|+|...|.+|+|.+...- + -.+.. .+....++.+. -.....+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 489999999999999999999999999999999874321 0 00111 11111122111 2245677778
Q ss_pred CCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccch
Q 030566 67 GLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVC 144 (175)
Q Consensus 67 ~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~ 144 (175)
+|..... ..+...+| ++.|..|++.+.. .|.+||||||+...+...++.+.+.|. .-..|| +++|||-
T Consensus 427 ~F~~~~~-~~~v~~LSGGEk~Rl~La~ll~~--~pNvLiLDEPTNhLDi~s~~aLe~aL~---~f~Gtv----l~VSHDr 496 (530)
T COG0488 427 GFTGEDQ-EKPVGVLSGGEKARLLLAKLLLQ--PPNLLLLDEPTNHLDIESLEALEEALL---DFEGTV----LLVSHDR 496 (530)
T ss_pred CCChHHH-hCchhhcCHhHHHHHHHHHHhcc--CCCEEEEcCCCccCCHHHHHHHHHHHH---hCCCeE----EEEeCCH
Confidence 8876542 33344455 8999999999999 999999999955555554444444444 445699 9999999
Q ss_pred hhhhcCCCceeEeccchhhHHhhhhcc
Q 030566 145 IRFRTLPPCIVCFCCTHTVVQRAYSFL 171 (175)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (175)
..+...+++++.+....+.+.++|.-|
T Consensus 497 ~Fl~~va~~i~~~~~~~~~~~g~y~~y 523 (530)
T COG0488 497 YFLDRVATRIWLVEDKVEEFEGGYEDY 523 (530)
T ss_pred HHHHhhcceEEEEcCceeEcCCCHHHH
Confidence 999999999999998444444555443
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=171.91 Aligned_cols=158 Identities=15% Similarity=0.027 Sum_probs=107.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccC------Ccchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAM------DIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~------~~~~~~~--------- 58 (175)
+||-+||+|+|||||||++|+|.++.. ++|+|.++|.++++ +.+++.|+- ++..++.
T Consensus 377 kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~e 455 (591)
T KOG0057|consen 377 KGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDE 455 (591)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHH
Confidence 599999999999999999999999999 89999999998643 334555521 1111111
Q ss_pred -HHHHHHHhCCCCCC-----chh----hhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 -LEDVMEELGLGPNG-----GLI----YCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l~~~~-----~~~----~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++..++.+-- ... .... +..|+|+.+++|++.+ |||++++|||+...+.+.-..+.+.+..
T Consensus 456 eV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK--da~Il~~DEaTS~LD~~TE~~i~~~i~~- 532 (591)
T KOG0057|consen 456 EVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK--DAPILLLDEATSALDSETEREILDMIMD- 532 (591)
T ss_pred HHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc--CCCeEEecCcccccchhhHHHHHHHHHH-
Confidence 12333333332110 000 0111 2238999999999999 9999999999444444433333334444
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
...++|+ +++-|++..+ +.+|.+++++++.+.-+++
T Consensus 533 ~~~~rTv----I~IvH~l~ll-~~~DkI~~l~nG~v~e~gt 568 (591)
T KOG0057|consen 533 VMSGRTV----IMIVHRLDLL-KDFDKIIVLDNGTVKEYGT 568 (591)
T ss_pred hcCCCeE----EEEEecchhH-hcCCEEEEEECCeeEEecc
Confidence 3468999 9999998866 6679999999998765544
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-22 Score=192.04 Aligned_cols=158 Identities=15% Similarity=0.032 Sum_probs=104.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC-cccccCCCCccCCcchhcc---------HHHHHHHhCC--
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGL-- 68 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l-- 68 (175)
+|++++|+||||||||||+++|+|+++|++|+|.++|.- ...+... .+..++++++. ..++++..++
T Consensus 451 ~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~-l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~ 529 (1490)
T TIGR01271 451 KGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSW-IMPGTIKDNIIFGLSYDEYRYTSVIKACQLEE 529 (1490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCc-cCCccHHHHHHhccccchHHHHHHHHHHhHHH
Confidence 599999999999999999999999999999999998731 1112211 11124444332 1122221111
Q ss_pred ----CCCCc-----hhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHH-HHHHHHhCCCcEEEEEe
Q 030566 69 ----GPNGG-----LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN-FVDHLKSRNFNVCAVYL 138 (175)
Q Consensus 69 ----~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~-~l~~l~~~g~tvli~~l 138 (175)
.+... .....-+.+|+||..|+|++.. +|++++||||....+......+.+ ++..+. +++|+ +
T Consensus 530 ~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~--~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tv----i 602 (1490)
T TIGR01271 530 DIALFPEKDKTVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTR----I 602 (1490)
T ss_pred HHHhccccccccccCcCCCcCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeE----E
Confidence 01000 0001123349999999999999 999999999944433443444443 455553 48999 9
Q ss_pred eeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 139 LDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++||+++.+.. +|+++++..+..+.+++
T Consensus 603 lvtH~~~~~~~-ad~ii~l~~g~i~~~g~ 630 (1490)
T TIGR01271 603 LVTSKLEHLKK-ADKILLLHEGVCYFYGT 630 (1490)
T ss_pred EEeCChHHHHh-CCEEEEEECCEEEEEcC
Confidence 99999998864 99999999887654443
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-22 Score=192.40 Aligned_cols=159 Identities=16% Similarity=0.043 Sum_probs=111.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.+||+|++|||||||+++|.|+++|++|+|.++|.|+.. ..+++.+ .-+.++++.
T Consensus 1311 ~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdee 1390 (1522)
T TIGR00957 1311 GGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEE 1390 (1522)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHH
Confidence 499999999999999999999999999999999999988643 1222222 123444432
Q ss_pred HHHHHHHhCCCCCC-----chh----h--hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 LEDVMEELGLGPNG-----GLI----Y--CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 ~~~~~~~~~l~~~~-----~~~----~--~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++..++.... ... . ..-+.+|+|+..|||++.+ +|++|+||||+...+......+.+.|++.
T Consensus 1391 i~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr--~~~ILiLDEaTSalD~~Te~~Iq~~l~~~- 1467 (1522)
T TIGR00957 1391 VWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR--KTKILVLDEATAAVDLETDNLIQSTIRTQ- 1467 (1522)
T ss_pred HHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHHHHHHHH-
Confidence 12233332221100 000 0 1123359999999999999 99999999995555555455666677664
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.+++|| ++++|+++.+.+ +|++++|+.|..+-+++
T Consensus 1468 ~~~~Tv----I~IAHRl~ti~~-~DrIlVld~G~IvE~G~ 1502 (1522)
T TIGR00957 1468 FEDCTV----LTIAHRLNTIMD-YTRVIVLDKGEVAEFGA 1502 (1522)
T ss_pred cCCCEE----EEEecCHHHHHh-CCEEEEEECCEEEEECC
Confidence 357899 999999998876 69999999888764443
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-22 Score=191.03 Aligned_cols=158 Identities=14% Similarity=0.075 Sum_probs=111.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.+||+|++|||||||+++|.|+++|++|+|.++|.++.. +.+++.+ .-++++++.
T Consensus 1335 ~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdee 1414 (1560)
T PTZ00243 1335 PREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAE 1414 (1560)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHH
Confidence 599999999999999999999999999999999999988643 2233322 224444432
Q ss_pred HHHHHHHhCCCCCC-----chh----h--hHHHHHHHHHHHHHHHhhccCC-CCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 LEDVMEELGLGPNG-----GLI----Y--CMEHLEDNLDDWLAEELDNYLD-DDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ~~~~~~~~~l~~~~-----~~~----~--~~~~~~~~~~~~l~~~l~~~~~-p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++..++.... ... . ..-+.+|+|+..|||++.+ + |++||||||+...+......+.+.|++.
T Consensus 1415 I~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~--~~~~ILlLDEATSaLD~~te~~Iq~~L~~~ 1492 (1560)
T PTZ00243 1415 VWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK--KGSGFILMDEATANIDPALDRQIQATVMSA 1492 (1560)
T ss_pred HHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc--CCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 12333433332110 000 0 1123349999999999998 7 8999999995555555455566667664
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
.+++|| ++++|+++.+.+ +|++++|+.|.++-++
T Consensus 1493 -~~~~Tv----I~IAHRl~ti~~-~DrIlVLd~G~VvE~G 1526 (1560)
T PTZ00243 1493 -FSAYTV----ITIAHRLHTVAQ-YDKIIVMDHGAVAEMG 1526 (1560)
T ss_pred -CCCCEE----EEEeccHHHHHh-CCEEEEEECCEEEEEC
Confidence 347899 999999988754 7999999988876443
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-22 Score=152.29 Aligned_cols=150 Identities=11% Similarity=0.039 Sum_probs=96.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCcccc---------ceeEEeecCccc----ccCCCCccCCcchhc---cHHHHHHH
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVR---------RTMHIVNLDPAA----ENFDYPVAMDIRELI---SLEDVMEE 65 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~---------G~I~i~g~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~ 65 (175)
| +++|+||||||||||+++|+|+.++.. |++.+.|.+... ..+++.+. +...++ ....+.+.
T Consensus 23 g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq-~~~~~~~~~~~~~~~~~ 100 (197)
T cd03278 23 G-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFD-NSDGRYSIISQGDVSEI 100 (197)
T ss_pred C-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEE-cCCCceeEEehhhHHHH
Confidence 6 899999999999999999999987653 356666655321 22233331 111111 11122222
Q ss_pred hCCCCCCchhhhHHHHHHHHHHHHHHHhhc--cCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccc
Q 030566 66 LGLGPNGGLIYCMEHLEDNLDDWLAEELDN--YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQV 143 (175)
Q Consensus 66 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~ 143 (175)
+............-+..++++..++++++. +.+|++++||||...........+.++++++++ +.|| +++||+
T Consensus 101 l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~ti----IiitH~ 175 (197)
T cd03278 101 IEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK-ETQF----IVITHR 175 (197)
T ss_pred HhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-CCEE----EEEECC
Confidence 222221112222223348888999997752 126799999999666666667778888888855 6788 999999
Q ss_pred hhhhhcCCCceeEecc
Q 030566 144 CIRFRTLPPCIVCFCC 159 (175)
Q Consensus 144 ~~~~~~~~~~~~~~~~ 159 (175)
++.+ +++|+++.+..
T Consensus 176 ~~~~-~~~d~v~~~~~ 190 (197)
T cd03278 176 KGTM-EAADRLYGVTM 190 (197)
T ss_pred HHHH-hhcceEEEEEe
Confidence 9876 58998877654
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-22 Score=174.62 Aligned_cols=162 Identities=17% Similarity=0.136 Sum_probs=121.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc---ccceeEEeecCccc-----------ccCCCCccCCcchhcc--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDPAA-----------ENFDYPVAMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~---~~G~I~i~g~~~~~-----------~~~~~~~~~~~~~~~~-------- 58 (175)
.||+.||+||+|||||||+++|+|-... .+|+|.++|+.... |+..+.+.+++++.+.
T Consensus 55 ~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp 134 (613)
T KOG0061|consen 55 PGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLP 134 (613)
T ss_pred cCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCC
Confidence 3999999999999999999999999874 78999999955322 3334455556665553
Q ss_pred -----------HHHHHHHhCCCCCCchhh-----hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIY-----CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
.+++++++++..-..... +.-+.+|+.|..++..+.. +|+++++|||+...+-.....+.+.
T Consensus 135 ~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~--~P~iLflDEPTSGLDS~sA~~vv~~ 212 (613)
T KOG0061|consen 135 SSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLT--DPSILFLDEPTSGLDSFSALQVVQL 212 (613)
T ss_pred CCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHc--CCCEEEecCCCCCcchhhHHHHHHH
Confidence 345666666652111111 1123348899999999999 9999999999544444445566679
Q ss_pred HHHHHhCCCcEEEEEeeeccch-hhhhcCCCceeEeccchhhHHhhh
Q 030566 123 VDHLKSRNFNVCAVYLLDSQVC-IRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~-~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
|++++++|+|| +++-|+. .++-++.|++.+|+.|.+++++..
T Consensus 213 Lk~lA~~grtV----i~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~ 255 (613)
T KOG0061|consen 213 LKRLARSGRTV----ICTIHQPSSELFELFDKLLLLSEGEVVYSGSP 255 (613)
T ss_pred HHHHHhCCCEE----EEEEeCCcHHHHHHHhHhhhhcCCcEEEecCH
Confidence 99999889999 8888987 467788899999999999998854
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-22 Score=187.90 Aligned_cols=160 Identities=19% Similarity=0.148 Sum_probs=105.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC-cccccCCCCccCCcchhcc---------HHHHHHH-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEE----- 65 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~----- 65 (175)
+|++++|+||||||||||+++|+|+++|++|+|.++|.- ...++. +.+..++++++. ..++++.
T Consensus 663 ~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~-~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~ 741 (1522)
T TIGR00957 663 EGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQA-WIQNDSLRENILFGKALNEKYYQQVLEACALLP 741 (1522)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCc-cccCCcHHHHhhcCCccCHHHHHHHHHHhCCHH
Confidence 599999999999999999999999999999999998731 111111 122224444332 1122221
Q ss_pred -hCCCCCC-----chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH--HhCCCcEEEEE
Q 030566 66 -LGLGPNG-----GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL--KSRNFNVCAVY 137 (175)
Q Consensus 66 -~~l~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l--~~~g~tvli~~ 137 (175)
++..+.. ......-+.+|+||..|||++.. +|++++||||....+......+.+.+... ..+++|+
T Consensus 742 ~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~--~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tv---- 815 (1522)
T TIGR00957 742 DLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS--NADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTR---- 815 (1522)
T ss_pred HHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEE----
Confidence 1111110 00001123349999999999999 99999999994443344344444444322 1357899
Q ss_pred eeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 138 LLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 138 l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
+++||+++.+.. +|++++++.|..+.++++
T Consensus 816 IlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~ 845 (1522)
T TIGR00957 816 ILVTHGISYLPQ-VDVIIVMSGGKISEMGSY 845 (1522)
T ss_pred EEEeCChhhhhh-CCEEEEecCCeEEeeCCH
Confidence 999999998865 999999998877655443
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-21 Score=143.74 Aligned_cols=162 Identities=14% Similarity=0.058 Sum_probs=119.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------------ccCCCCccCCcchhcc------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------------ENFDYPVAMDIRELIS------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------------~~~~~~~~~~~~~~~~------ 58 (175)
+||++||+|++|||||||++||++-+.|+.|+|.+...+-+. -++++.. .++.+-+.
T Consensus 31 PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~Vh-QnP~DGLRm~VSAG 109 (258)
T COG4107 31 PGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVH-QNPRDGLRMQVSAG 109 (258)
T ss_pred CCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceee-cCccccceeeeccC
Confidence 499999999999999999999999999999999986432100 1222221 11111110
Q ss_pred ---------------------HHHHHHHhCCCCCCchhhh-HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccc
Q 030566 59 ---------------------LEDVMEELGLGPNGGLIYC-MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHV 116 (175)
Q Consensus 59 ---------------------~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~ 116 (175)
..++++.+++........+ ..+-.++||.-++|.+.. .|.++++|||+...+.+-.
T Consensus 110 ~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt--~PrLvfMDEPTGGLDVSVQ 187 (258)
T COG4107 110 GNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVT--RPRLVFMDEPTGGLDVSVQ 187 (258)
T ss_pred CccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhcc--CCceEEecCCCCCcchhhH
Confidence 3567777777654322211 123348899999999999 9999999999666666666
Q ss_pred hHHHHHHHHHH-hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhhh
Q 030566 117 PVLRNFVDHLK-SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYS 169 (175)
Q Consensus 117 ~~~~~~l~~l~-~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (175)
..+..+++.+. +-+.++ +++||++..+.-+++++.+|..+.++-++=++
T Consensus 188 ARLLDllrgLv~~l~la~----viVTHDl~VarLla~rlmvmk~g~vve~GLTD 237 (258)
T COG4107 188 ARLLDLLRGLVRELGLAV----VIVTHDLAVARLLADRLMVMKQGQVVESGLTD 237 (258)
T ss_pred HHHHHHHHHHHHhcCceE----EEEechhHHHHHhhhcceeecCCCEecccccc
Confidence 67777888874 558899 99999999999999999999999888765443
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-22 Score=144.24 Aligned_cols=105 Identities=25% Similarity=0.267 Sum_probs=74.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc-------cCCcchhc---cHHHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV-------AMDIRELI---SLEDVM 63 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~-------~~~~~~~~---~~~~~~ 63 (175)
+|++++|+|+||||||||+++|+|+.+|++|+|.++|.++.. ..+++.+ ..++.++. ....++
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~~l 89 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEEVL 89 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHHHH
T ss_pred CCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 599999999999999999999999999999999999876533 1222222 12233322 234566
Q ss_pred HHhCCCCCCchhh----hHHHHHHHHHHHHHHHhhccCCCCEEEEeCC
Q 030566 64 EELGLGPNGGLIY----CMEHLEDNLDDWLAEELDNYLDDDYLVFDCP 107 (175)
Q Consensus 64 ~~~~l~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP 107 (175)
+.+++........ ..-+..++++..+++++.. +|++++||||
T Consensus 90 ~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~--~~~llllDEP 135 (137)
T PF00005_consen 90 KKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLK--NPKLLLLDEP 135 (137)
T ss_dssp HHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHT--TSSEEEEEST
T ss_pred cccccccccccccccccchhhHHHHHHHHHHHHHHc--CCCEEEEeCC
Confidence 6665543211111 2223448999999999999 9999999999
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-22 Score=150.61 Aligned_cols=161 Identities=16% Similarity=0.130 Sum_probs=108.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------------ccCCCCccCCcchhcc---------
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS--------- 58 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------------~~~~~~~~~~~~~~~~--------- 58 (175)
||++-+|||||||||||+-.++|+++ .+|+|.++|.+... ++..-.+.+.++.++.
T Consensus 25 Ge~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a 103 (248)
T COG4138 25 GEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRT 103 (248)
T ss_pred ceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHH
Confidence 89999999999999999999999985 69999999988532 1111111222222222
Q ss_pred --HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhcc---CCC--CEEEEeCCCcccccccchHHHHHHHHHHhCCC
Q 030566 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNY---LDD--DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 59 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~p--~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
...+...+.++.+..+....-+-.+.||..++-...+. .+| +++++|||....+......+-.++.+++..|.
T Consensus 104 ~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~ 183 (248)
T COG4138 104 ELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGL 183 (248)
T ss_pred HHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCc
Confidence 34566667776655443322222367776666544432 244 59999999222222222234457888889999
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+| +|++||+......+++++++..|..+.+++
T Consensus 184 ~v----ims~HDLNhTLrhA~~~wLL~rG~l~~~G~ 215 (248)
T COG4138 184 AI----VMSSHDLNHTLRHAHRAWLLKRGKLLASGR 215 (248)
T ss_pred EE----EEeccchhhHHHHHHHHHHHhcCeEEeecc
Confidence 99 999999999999999999888877655543
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-22 Score=153.19 Aligned_cols=158 Identities=12% Similarity=0.015 Sum_probs=96.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc-cCccccceeEEee------cCcccccCCCCccCC-----cch--hccHHHHHH--
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVN------LDPAAENFDYPVAMD-----IRE--LISLEDVME-- 64 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~g-l~~~~~G~I~i~g------~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~-- 64 (175)
+|++++|+||||||||||+++|++ ++.+..+...... .......+.+.+... ... -+...++.+
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~~ 106 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLDYDQFTRIV 106 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCCCHHHHHHhh
Confidence 378999999999999999999996 4444444433210 000111111111000 000 011111111
Q ss_pred ---HhCCCCCCchhhhHHHHHHHHHHHHHHHhhc---c-----CCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcE
Q 030566 65 ---ELGLGPNGGLIYCMEHLEDNLDDWLAEELDN---Y-----LDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNV 133 (175)
Q Consensus 65 ---~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~---~-----~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tv 133 (175)
...+..........-+..++++..++++++. + .+|++++||||....+....+.+.+.++++++++.|+
T Consensus 107 ~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~ti 186 (213)
T cd03279 107 LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMV 186 (213)
T ss_pred hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 1111111111111123347888999998863 0 1678999999966666666677778888887778999
Q ss_pred EEEEeeeccchhhhhcCCCceeEeccchh
Q 030566 134 CAVYLLDSQVCIRFRTLPPCIVCFCCTHT 162 (175)
Q Consensus 134 li~~l~~sH~~~~~~~~~~~~~~~~~~~~ 162 (175)
+++||+++.+..+++++.++..+-+
T Consensus 187 ----i~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 187 ----GVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred ----EEEECchHHHHhhCcEEEEEecCCC
Confidence 9999999999999999999987654
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=185.08 Aligned_cols=156 Identities=19% Similarity=0.148 Sum_probs=110.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||.+||+|++|||||||+++|+|+++ .+|+|.++|.++.. +.+++.+ .-++++++.
T Consensus 1244 ~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdee 1322 (1490)
T TIGR01271 1244 GGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEE 1322 (1490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHH
Confidence 499999999999999999999999997 79999999988632 1222222 224444443
Q ss_pred HHHHHHHhCCCCCC-----chhh----h--HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 LEDVMEELGLGPNG-----GLIY----C--MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 ~~~~~~~~~l~~~~-----~~~~----~--~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++..++.... .... . .-+.+|+|+..|+|++.+ +|++|+||||+...+......+.+.|++.
T Consensus 1323 i~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr--~~~ILlLDEaTS~lD~~Te~~I~~~L~~~- 1399 (1490)
T TIGR01271 1323 IWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS--KAKILLLDEPSAHLDPVTLQIIRKTLKQS- 1399 (1490)
T ss_pred HHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC--CCCEEEEeCCcccCCHHHHHHHHHHHHHH-
Confidence 23344444432110 0000 0 123358999999999999 99999999995555555555666677665
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
.+++|| ++++|+++.+.+ +|++++|+.|+++-.
T Consensus 1400 ~~~~Tv----I~IaHRl~ti~~-~DrIlvL~~G~ivE~ 1432 (1490)
T TIGR01271 1400 FSNCTV----ILSEHRVEALLE-CQQFLVIEGSSVKQY 1432 (1490)
T ss_pred cCCCEE----EEEecCHHHHHh-CCEEEEEECCEEEEe
Confidence 347899 999999998876 899999999887643
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-21 Score=184.67 Aligned_cols=160 Identities=16% Similarity=0.061 Sum_probs=102.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC-cccccCCCCccCCcchhccH---------HHHHH------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELISL---------EDVME------ 64 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~------ 64 (175)
+|++++|+||||||||||+++|+|+++|++|+|.+.+.- ...+... .+..++++++.. .++++
T Consensus 685 ~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~-l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~ 763 (1560)
T PTZ00243 685 RGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAW-IMNATVRGNILFFDEEDAARLADAVRVSQLEA 763 (1560)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCc-cCCCcHHHHHHcCChhhHHHHHHHHHHhhhHH
Confidence 599999999999999999999999999999999874311 0111111 122244443321 11111
Q ss_pred ---Hh--CCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH-HHHHHHHHhCCCcEEEEEe
Q 030566 65 ---EL--GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL-RNFVDHLKSRNFNVCAVYL 138 (175)
Q Consensus 65 ---~~--~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~-~~~l~~l~~~g~tvli~~l 138 (175)
.+ ++..........-+.+|+||..|+|++.. +|++++||||....+......+ ..++... .+|+|+ +
T Consensus 764 ~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~--~p~illLDEP~saLD~~~~~~i~~~~~~~~-~~~~Tv----I 836 (1560)
T PTZ00243 764 DLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYA--NRDVYLLDDPLSALDAHVGERVVEECFLGA-LAGKTR----V 836 (1560)
T ss_pred HHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHHHHHHHHh-hCCCEE----E
Confidence 11 11111000111122348999999999999 9999999999333222222222 2233222 258899 9
Q ss_pred eeccchhhhhcCCCceeEeccchhhHHhhhh
Q 030566 139 LDSQVCIRFRTLPPCIVCFCCTHTVVQRAYS 169 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (175)
++||+++.+ ..+|++++|+.|..+.++++.
T Consensus 837 lvTH~~~~~-~~ad~ii~l~~G~i~~~G~~~ 866 (1560)
T PTZ00243 837 LATHQVHVV-PRADYVVALGDGRVEFSGSSA 866 (1560)
T ss_pred EEeCCHHHH-HhCCEEEEEECCEEEEecCHH
Confidence 999999988 579999999998877666554
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-21 Score=159.86 Aligned_cols=166 Identities=17% Similarity=0.168 Sum_probs=122.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-----ccceeEEeecCccc-----------ccCC---------CCccCCcch
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-----------ENFD---------YPVAMDIRE 55 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-----~~G~I~i~g~~~~~-----------~~~~---------~~~~~~~~~ 55 (175)
.||+++|+|++|||||-..+.|.++++. -+|+|.++|.+... ..++ ..|-.+...
T Consensus 35 ~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~ 114 (534)
T COG4172 35 AGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGK 114 (534)
T ss_pred CCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHH
Confidence 4999999999999999999999999974 37899999987421 1222 222112222
Q ss_pred hcc-----------------HHHHHHHhCCCCCCchh-hhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCccccccc
Q 030566 56 LIS-----------------LEDVMEELGLGPNGGLI-YCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTH 115 (175)
Q Consensus 56 ~~~-----------------~~~~~~~~~l~~~~~~~-~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~ 115 (175)
++. ..++++.+++....... ....++| |+||..++.+++. +|++||.|||+...+.+-
T Consensus 115 Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan--~P~lLIADEPTTALDVtv 192 (534)
T COG4172 115 QLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALAN--EPDLLIADEPTTALDVTV 192 (534)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcC--CCCeEeecCCcchhhhhh
Confidence 211 34667777776543221 1223344 8999999999999 999999999944444444
Q ss_pred chHHHHHHHHHHh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhhhccc
Q 030566 116 VPVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYSFLF 172 (175)
Q Consensus 116 ~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (175)
...+.++|+++++ .|.++ +++|||+..+.+++|++.+|..|..|-+....-.|
T Consensus 193 QaQIL~Ll~~Lq~~~gMa~----lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 193 QAQILDLLKELQAELGMAI----LFITHDLGIVRKFADRVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred HHHHHHHHHHHHHHhCcEE----EEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHh
Confidence 5567779999864 59999 99999999999999999999999999887766554
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-21 Score=161.26 Aligned_cols=156 Identities=17% Similarity=0.055 Sum_probs=106.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCC--------------ccCCcchhcc----HHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYP--------------VAMDIRELIS----LEDV 62 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~--------------~~~~~~~~~~----~~~~ 62 (175)
+||++.|+|.|||||||+++.++|+++|++|+|.++|.++..++..-+ +..-..+.+. ....
T Consensus 348 rGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~ 427 (546)
T COG4615 348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKW 427 (546)
T ss_pred cCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHH
Confidence 499999999999999999999999999999999999998754322100 0000111111 2334
Q ss_pred HHHhCCCCCCc---hhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH-HHHHHHHHhCCCcEEEE
Q 030566 63 MEELGLGPNGG---LIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL-RNFVDHLKSRNFNVCAV 136 (175)
Q Consensus 63 ~~~~~l~~~~~---~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~-~~~l~~l~~~g~tvli~ 136 (175)
++.+++..... .....-.+| |+.|.++-.++.+ +.|++++||=+...+...+.++ ..++-.++++|+||
T Consensus 428 LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE--eR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI--- 502 (546)
T COG4615 428 LQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE--ERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTI--- 502 (546)
T ss_pred HHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHh--hCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeE---
Confidence 44444432211 111112333 6666666669999 9999999999777666666655 34667788899999
Q ss_pred EeeeccchhhhhcCCCceeEeccchhh
Q 030566 137 YLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 137 ~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+-+|||-. .-..+||++.+.+|..+
T Consensus 503 -~aIsHDd~-YF~~ADrll~~~~G~~~ 527 (546)
T COG4615 503 -FAISHDDH-YFIHADRLLEMRNGQLS 527 (546)
T ss_pred -EEEecCch-hhhhHHHHHHHhcCcee
Confidence 88888844 44677888888877654
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-20 Score=147.54 Aligned_cols=154 Identities=12% Similarity=0.078 Sum_probs=95.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHH----------------ccCccccc--------eeEEeecCcc----c------ccCCC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLY----------------RHCETVRR--------TMHIVNLDPA----A------ENFDY 47 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~----------------gl~~~~~G--------~I~i~g~~~~----~------~~~~~ 47 (175)
|++++|+||||||||||+++|+ +++.+.+| ++.+++.+.. . +.+++
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~ 102 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGL 102 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEEC
Confidence 6899999999999999999998 44555566 5555553211 0 11222
Q ss_pred CccC-Ccch-hcc---HHHHHHHhCCCCCCc------------------hhhhHHHH--HHHHHHHHHHHhhc--cCCCC
Q 030566 48 PVAM-DIRE-LIS---LEDVMEELGLGPNGG------------------LIYCMEHL--EDNLDDWLAEELDN--YLDDD 100 (175)
Q Consensus 48 ~~~~-~~~~-~~~---~~~~~~~~~l~~~~~------------------~~~~~~~~--~~~~~~~l~~~l~~--~~~p~ 100 (175)
.+.. .... ... ....++.+++..... .......+ .++++..++++++. ..+|+
T Consensus 103 ~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~ 182 (243)
T cd03272 103 KKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAP 182 (243)
T ss_pred CCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCC
Confidence 2100 0000 111 233445444433110 00112223 48899999998852 11689
Q ss_pred EEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccch
Q 030566 101 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 101 lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
++++|||....+......+.+.++++++ +.++ +++||. .++.++||+++.+.-..
T Consensus 183 illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~i----i~~~h~-~~~~~~~d~i~~l~~~~ 237 (243)
T cd03272 183 FYLFDEIDAALDAQYRTAVANMIKELSD-GAQF----ITTTFR-PELLEVADKFYGVKFRN 237 (243)
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHhC-CCEE----EEEecC-HHHHhhCCEEEEEEEEC
Confidence 9999999666666666777778888755 6667 777787 55789999999887544
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-21 Score=184.16 Aligned_cols=160 Identities=14% Similarity=0.129 Sum_probs=104.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcccc-ceeEEeecCcccccCCCCccCCcchhcc---------HHHHHHHhCCCC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLGP 70 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~-G~I~i~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~ 70 (175)
+|+.++|+||+|||||||+++|+|.++|++ |+|.+.+.-.--.+..+.+.-++++++. ..++++..++..
T Consensus 642 ~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~ 721 (1622)
T PLN03130 642 VGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQH 721 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHH
Confidence 599999999999999999999999999999 9998765321111112222234444443 223333322211
Q ss_pred ------CC-ch--hhh--HHHHHHHHHHHHHHHhhccCCCCEEEEeCC-CcccccccchHHHHHHHHHHhCCCcEEEEEe
Q 030566 71 ------NG-GL--IYC--MEHLEDNLDDWLAEELDNYLDDDYLVFDCP-GQIELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (175)
Q Consensus 71 ------~~-~~--~~~--~~~~~~~~~~~l~~~l~~~~~p~lliLDEP-~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l 138 (175)
.. .. ... .-+.+||||..|||++.. +|++++|||| +..|.....+.+.+.++.+. +++|+ +
T Consensus 722 di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~--~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTv----I 794 (1622)
T PLN03130 722 DLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYS--NSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTR----V 794 (1622)
T ss_pred HHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhC--CCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEE----E
Confidence 00 00 001 123349999999999999 9999999999 22222222233344454442 57999 9
Q ss_pred eeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 139 LDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
++||++..+ ..+|++++++.|..+-+++|
T Consensus 795 lVTH~l~~l-~~aD~Ii~L~~G~i~e~Gt~ 823 (1622)
T PLN03130 795 LVTNQLHFL-SQVDRIILVHEGMIKEEGTY 823 (1622)
T ss_pred EEECCHhHH-HhCCEEEEEeCCEEEEeCCH
Confidence 999999754 67899999999887766554
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-21 Score=142.96 Aligned_cols=151 Identities=17% Similarity=0.154 Sum_probs=112.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC---------------cccccCCCCcc-------CCcchhcc-
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD---------------PAAENFDYPVA-------MDIRELIS- 58 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~---------------~~~~~~~~~~~-------~~~~~~~~- 58 (175)
|||+++-||+|||||||+|++-|-+.|++|+|.+.... ++.+.++|... ....+...
T Consensus 37 GECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvae 116 (235)
T COG4778 37 GECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAE 116 (235)
T ss_pred ccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHh
Confidence 99999999999999999999999999999999985432 11223333321 01111110
Q ss_pred ---------------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHH
Q 030566 59 ---------------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRN 121 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~ 121 (175)
...++..+.++.+. |......+| ++||.-++|++.- |-|+|+||||+...+..+++.+.+
T Consensus 117 Pll~~gv~~~~a~~~a~~Ll~rLnlperL-W~LaPaTFSGGEqQRVNIaRgfiv--d~pILLLDEPTasLDa~Nr~vVve 193 (235)
T COG4778 117 PLLARGVPREVARAKAADLLTRLNLPERL-WSLAPATFSGGEQQRVNIARGFIV--DYPILLLDEPTASLDATNRAVVVE 193 (235)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCCHHH-hcCCCcccCCchheehhhhhhhhc--cCceEEecCCcccccccchHHHHH
Confidence 23455666666554 333334444 8899999999999 999999999988877888999999
Q ss_pred HHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEecc
Q 030566 122 FVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 122 ~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
++.+-+.+|.++ +=+-||-+.=+..+||++-+.+
T Consensus 194 li~e~Ka~GaAl----vGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 194 LIREAKARGAAL----VGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred HHHHHHhcCceE----EEeeccHHHHHHHhhheeeccc
Confidence 999998899999 8888987777778888887765
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-20 Score=169.93 Aligned_cols=160 Identities=19% Similarity=0.146 Sum_probs=112.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccc-------cCCCCc------cCCcchhcc-------HH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDYPV------AMDIRELIS-------LE 60 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~-------~~~~~~------~~~~~~~~~-------~~ 60 (175)
+|+.+||+||+||||||.+..|-..+.|++|.|.+||.+++.- +++.+. .-+.++++. ..
T Consensus 1015 ~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~ 1094 (1228)
T KOG0055|consen 1015 AGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEE 1094 (1228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHH
Confidence 4999999999999999999999999999999999999987542 222221 112333222 12
Q ss_pred HHHHHhCCC--------CCCchhh----hHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 61 DVMEELGLG--------PNGGLIY----CMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 61 ~~~~~~~l~--------~~~~~~~----~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
++.+-..+. ....... ....+ .|+||.++|||+.+ +|++|+|||.+...+......+++.|++.
T Consensus 1095 eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR--nPkILLLDEATSALDseSErvVQeALd~a 1172 (1228)
T KOG0055|consen 1095 EIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR--NPKILLLDEATSALDSESERVVQEALDRA 1172 (1228)
T ss_pred HHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc--CCCeeeeeccchhhhhhhHHHHHHHHHHh
Confidence 222211111 0000000 11122 49999999999999 99999999995554455555666777776
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
..|+|. +++.|++..+ +-||.|.++++|.++=+++-
T Consensus 1173 -~~gRT~----IvIAHRLSTI-qnaD~I~Vi~~G~VvE~GtH 1208 (1228)
T KOG0055|consen 1173 -MEGRTT----IVIAHRLSTI-QNADVIAVLKNGKVVEQGTH 1208 (1228)
T ss_pred -hcCCcE----EEEecchhhh-hcCCEEEEEECCEEEecccH
Confidence 458999 9999999987 66799999999998877653
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-20 Score=176.97 Aligned_cols=159 Identities=12% Similarity=0.064 Sum_probs=101.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE-eecC-cccccCCCCccCCcchhcc---------HHHHHHHhCCC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI-VNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLG 69 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i-~g~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~ 69 (175)
+|+.++|+||+|||||||+++|+|.++|++|.+.. .+.- ...|+ .+.+.-+.++++. ..++++..++.
T Consensus 642 ~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~-p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~ 720 (1495)
T PLN03232 642 VGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQV-SWIFNATVRENILFGSDFESERYWRAIDVTALQ 720 (1495)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCc-cccccccHHHHhhcCCccCHHHHHHHHHHhCCH
Confidence 59999999999999999999999999999987643 2210 01111 1222224444432 22333332221
Q ss_pred C------CCc-h--hhh--HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccc-cccchHHHHHHHHHHhCCCcEEEEE
Q 030566 70 P------NGG-L--IYC--MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIEL-FTHVPVLRNFVDHLKSRNFNVCAVY 137 (175)
Q Consensus 70 ~------~~~-~--~~~--~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~-~~~~~~~~~~l~~l~~~g~tvli~~ 137 (175)
. ... . ... .-+.+||||..|||++.+ +|++++||||....+ ....+.+.+.++.. .+++|+
T Consensus 721 ~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~--~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~---- 793 (1495)
T PLN03232 721 HDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYS--NSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTR---- 793 (1495)
T ss_pred HHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEE----
Confidence 1 000 0 000 122349999999999999 999999999922222 22222334444443 357899
Q ss_pred eeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 138 LLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 138 l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
+++||++..+ ..+|++++++.|..+-++++
T Consensus 794 IlvTH~~~~l-~~aD~Ii~L~~G~i~~~Gt~ 823 (1495)
T PLN03232 794 VLVTNQLHFL-PLMDRIILVSEGMIKEEGTF 823 (1495)
T ss_pred EEEECChhhH-HhCCEEEEEeCCEEEEecCH
Confidence 9999999865 66999999999887766654
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-20 Score=144.21 Aligned_cols=151 Identities=14% Similarity=0.085 Sum_probs=94.1
Q ss_pred EEEEECCCCCcHHHHHHHHH----ccCccccceeEEeecC----cccccCCCCccCC---cchhccHHHHHHHhCCCCCC
Q 030566 4 AQLVIGPAGSGKSTYCSSLY----RHCETVRRTMHIVNLD----PAAENFDYPVAMD---IRELISLEDVMEELGLGPNG 72 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~----gl~~~~~G~I~i~g~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~ 72 (175)
+++|+||||||||||+++|. |..+|++|.+..+... .....+.+.+... ........++.+++.+....
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~~~ 103 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFCHQG 103 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeeechH
Confidence 89999999999999999995 9888888766411111 1111111111000 00111112455554332211
Q ss_pred ch----hhhHHHHH--HHHH------HHHHHHhhccCCCCEEEEeCCCcccccccch-HHHHHHHHHHhC-CCcEEEEEe
Q 030566 73 GL----IYCMEHLE--DNLD------DWLAEELDNYLDDDYLVFDCPGQIELFTHVP-VLRNFVDHLKSR-NFNVCAVYL 138 (175)
Q Consensus 73 ~~----~~~~~~~~--~~~~------~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~-~~~~~l~~l~~~-g~tvli~~l 138 (175)
.. ......+| ++++ ..+++++.. +|+++++|||....+..... .+.+++++++++ +.|| +
T Consensus 104 ~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~--~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~i----i 177 (204)
T cd03240 104 ESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGS--NCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQL----I 177 (204)
T ss_pred HHHHHHhcCccccCccHHHHHHHHHHHHHHHHhcc--CCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEE----E
Confidence 00 00112222 5553 567788888 99999999996666666666 788889888765 7899 9
Q ss_pred eeccchhhhhcCCCceeEeccch
Q 030566 139 LDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
++||+.+.+ ..+|+++.+....
T Consensus 178 iitH~~~~~-~~~d~i~~l~~~~ 199 (204)
T cd03240 178 VITHDEELV-DAADHIYRVEKDG 199 (204)
T ss_pred EEEecHHHH-hhCCEEEEEeeCC
Confidence 999998876 5799888876543
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-19 Score=144.00 Aligned_cols=151 Identities=13% Similarity=0.059 Sum_probs=96.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccc-cceeEEeec-Cc---------cc-------ccC---------CCCccCCcc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNL-DP---------AA-------ENF---------DYPVAMDIR 54 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~-~G~I~i~g~-~~---------~~-------~~~---------~~~~~~~~~ 54 (175)
..+++|+||||||||||+++|++++.+. .|+++..+. +. .. ++. ...+.+++.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 3578999999999999999999998875 356666443 10 00 010 001111111
Q ss_pred h---------h-c--------cHHHHHHHhCCCCCCc--------------------hhhhHHHHHHHHHHHHHHHhhc-
Q 030566 55 E---------L-I--------SLEDVMEELGLGPNGG--------------------LIYCMEHLEDNLDDWLAEELDN- 95 (175)
Q Consensus 55 ~---------~-~--------~~~~~~~~~~l~~~~~--------------------~~~~~~~~~~~~~~~l~~~l~~- 95 (175)
. . + .....++.+++..... .....-+..++++..++++++.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 0 0 0 1345667777752210 1111123348888999998761
Q ss_pred -cCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEec
Q 030566 96 -YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFC 158 (175)
Q Consensus 96 -~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~ 158 (175)
..+|+++++|||+..........+.+.++++. +|.|+ +++||+ .++.+.+|+++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~i----i~iSH~-~~~~~~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQF----IVVSLK-EGMFNNANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEE----EEEECC-HHHHHhCCEEEEEE
Confidence 12789999999966666666777777888874 48889 999999 66667899887655
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-19 Score=129.67 Aligned_cols=147 Identities=14% Similarity=0.090 Sum_probs=98.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccc---cceeEEeecCcc-----cccCC-------CCccCCcchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPA-----AENFD-------YPVAMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~---~G~I~i~g~~~~-----~~~~~-------~~~~~~~~~~~~------- 58 (175)
||||+-|.||+|||||||+.-+.|.+.++ +|++.+++++.. .+.++ ..+.+++.+++.
T Consensus 27 ~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~ 106 (213)
T COG4136 27 KGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATL 106 (213)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCccc
Confidence 69999999999999999999999988753 799999987631 12222 333444444432
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH-HHHH
Q 030566 59 --------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV-DHLK 127 (175)
Q Consensus 59 --------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l-~~l~ 127 (175)
....++..++...-.. ..+.+| |+.|.++.|++.. .|++++||||-...+..-++.+++.+ .+.+
T Consensus 107 KG~aRr~~a~aAL~~~gL~g~f~~--dP~tlSGGQrARvaL~R~Lla--~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r 182 (213)
T COG4136 107 KGNARRNAANAALERSGLDGAFHQ--DPATLSGGQRARVALLRALLA--QPKALLLDEPFSRLDVALRDQFRQWVFSEVR 182 (213)
T ss_pred ccHHHHhhHHHHHHHhccchhhhc--ChhhcCcchHHHHHHHHHHHh--CcceeeeCCchhHHHHHHHHHHHHHHHHHHH
Confidence 2445666666543211 224444 8888999999999 99999999992221222233344433 4456
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeE
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVC 156 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~ 156 (175)
..|..+ +++||+.+++. --++++-
T Consensus 183 ~agiPt----v~VTHD~~Dvp-agsrVie 206 (213)
T COG4136 183 AAGIPT----VQVTHDLQDVP-AGSRVIE 206 (213)
T ss_pred hcCCCe----EEEecccccCC-CCCeeee
Confidence 678999 99999999987 3345443
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-20 Score=152.59 Aligned_cols=155 Identities=13% Similarity=0.142 Sum_probs=107.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC--cccccCCCCccCCcchhcc------------HHHHHHHh
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD--PAAENFDYPVAMDIRELIS------------LEDVMEEL 66 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~--~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 66 (175)
.||++|++||||-||||+.|+|+|.++|++|+ . .+.. ...|.+.-.+..++.+.+. ..++.+-+
T Consensus 366 ~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~-~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl 443 (591)
T COG1245 366 DGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-E-EDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPL 443 (591)
T ss_pred cceEEEEECCCCcchHHHHHHHhccccCCCCC-C-ccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCcc
Confidence 48999999999999999999999999999997 1 1111 1122222222224443332 12222222
Q ss_pred CCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCCcEEEEEeeeccc
Q 030566 67 GLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQV 143 (175)
Q Consensus 67 ~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~ 143 (175)
.+..-.. .+...+| +.||.+++.++.. ++++++||||+...+...+-...+.++++.+ .++|. +++.|+
T Consensus 444 ~l~~i~e--~~v~~LSGGELQRvaIaa~L~r--eADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta----~vVdHD 515 (591)
T COG1245 444 NLEDLLE--RPVDELSGGELQRVAIAAALSR--EADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTA----LVVDHD 515 (591)
T ss_pred chHHHHh--cccccCCchhHHHHHHHHHhcc--ccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceE----EEEecc
Confidence 2221111 1122333 8899999999999 9999999999766666656666778888754 57889 999999
Q ss_pred hhhhhcCCCceeEeccchhhHH
Q 030566 144 CIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+..+...+|++.++.+.+.+..
T Consensus 516 i~~~dyvsDr~ivF~GePg~~g 537 (591)
T COG1245 516 IYMIDYVSDRLIVFEGEPGKHG 537 (591)
T ss_pred eehhhhhhceEEEEecCCCccC
Confidence 9999999999999988776543
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-19 Score=141.26 Aligned_cols=98 Identities=17% Similarity=0.125 Sum_probs=72.7
Q ss_pred HHHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCC---CCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEE
Q 030566 61 DVMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLD---DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (175)
Q Consensus 61 ~~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~---p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~ 136 (175)
+.++.++++.. .......-+..++||..+++++.. + |++++||||+........+.+.+++++++++|.||
T Consensus 151 ~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~--~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tv--- 225 (261)
T cd03271 151 QTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSK--RSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTV--- 225 (261)
T ss_pred HHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhc--CCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE---
Confidence 34555666541 212222223348999999999998 6 79999999966666767778888999988889999
Q ss_pred EeeeccchhhhhcCCCceeEe------ccchhhHH
Q 030566 137 YLLDSQVCIRFRTLPPCIVCF------CCTHTVVQ 165 (175)
Q Consensus 137 ~l~~sH~~~~~~~~~~~~~~~------~~~~~~~~ 165 (175)
+++||+++++. .+|+++.+ ..|..+.+
T Consensus 226 -IiitH~~~~i~-~aD~ii~Lgp~~g~~~G~iv~~ 258 (261)
T cd03271 226 -VVIEHNLDVIK-CADWIIDLGPEGGDGGGQVVAS 258 (261)
T ss_pred -EEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEe
Confidence 99999999885 69999999 56655443
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-19 Score=140.71 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=98.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccceeEEeecC-------c-----ccccC--CCCc-------------------c
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-------P-----AAENF--DYPV-------------------A 50 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-------~-----~~~~~--~~~~-------------------~ 50 (175)
+.+|+||||||||||+++|+++..+..|+++..+.. . ....+ .+.. .
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ 103 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYR 103 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEEE
Confidence 789999999999999999999987766666543210 0 00000 0000 0
Q ss_pred CCcc--hhccHHHHHHHhCCCCCCc--------------------hhhhHHHH--HHHHHHHHHHHhhc--cCCCCEEEE
Q 030566 51 MDIR--ELISLEDVMEELGLGPNGG--------------------LIYCMEHL--EDNLDDWLAEELDN--YLDDDYLVF 104 (175)
Q Consensus 51 ~~~~--~~~~~~~~~~~~~l~~~~~--------------------~~~~~~~~--~~~~~~~l~~~l~~--~~~p~lliL 104 (175)
++.. ..-...++++.+++..... .......+ .++++..++++++. +..|++++|
T Consensus 104 ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lll 183 (247)
T cd03275 104 INGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVL 183 (247)
T ss_pred ECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 0000 0001245666666642210 01111233 37888999998875 114899999
Q ss_pred eCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchh
Q 030566 105 DCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHT 162 (175)
Q Consensus 105 DEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~ 162 (175)
|||.........+.+.+++++++++|.++ +++||+.+ +...+|+++++.-.++
T Consensus 184 DEPt~~LD~~~~~~l~~~i~~~~~~g~~v----i~isH~~~-~~~~~d~i~~~~~~~~ 236 (247)
T cd03275 184 DEVDAALDNTNVGKVASYIREQAGPNFQF----IVISLKEE-FFSKADALVGVYRDQE 236 (247)
T ss_pred ecccccCCHHHHHHHHHHHHHhccCCcEE----EEEECCHH-HHhhCCeEEEEEecCC
Confidence 99966666666777888999987778999 99999965 4578999988765543
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=147.87 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=116.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCc----------cCCcchhccHH--
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV----------AMDIRELISLE-- 60 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~----------~~~~~~~~~~~-- 60 (175)
+|||+||.|-=|||+|=|+++|.|..++.+|+|.++|++... ..++|.+ .+++.+++...
T Consensus 284 ~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l 363 (500)
T COG1129 284 AGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASL 363 (500)
T ss_pred CCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhh
Confidence 599999999999999999999999999999999999986432 1233332 23334443322
Q ss_pred -------------------HHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 61 -------------------DVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 61 -------------------~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
...+.+..-... ...+...+| -+|+..++|-+.. +|++||||||++..+..+...+
T Consensus 364 ~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s-~~~~v~~LSGGNQQKVvlarwL~~--~p~vLilDEPTRGIDVGAK~eI 440 (500)
T COG1129 364 RRFSRRGLIDRRKERALAERYIRRLRIKTPS-PEQPIGTLSGGNQQKVVLARWLAT--DPKVLILDEPTRGIDVGAKAEI 440 (500)
T ss_pred hhhccccccChHHHHHHHHHHHHhcCcccCC-ccchhhcCCchhhhhHHHHHHHhc--CCCEEEECCCCcCcccchHHHH
Confidence 111111111100 001122333 5688999999999 9999999999888777778888
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
-+++++++++|++| +++|.+++|+...|||+++|+.|..+
T Consensus 441 y~li~~lA~~G~ai----l~iSSElpEll~~~DRIlVm~~Gri~ 480 (500)
T COG1129 441 YRLIRELAAEGKAI----LMISSELPELLGLSDRILVMREGRIV 480 (500)
T ss_pred HHHHHHHHHCCCEE----EEEeCChHHHHhhCCEEEEEECCEEE
Confidence 88999999999999 99999999999999999999988654
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-19 Score=140.74 Aligned_cols=75 Identities=17% Similarity=0.103 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhhc--cCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEec
Q 030566 81 LEDNLDDWLAEELDN--YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFC 158 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~--~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~ 158 (175)
..++++..+++++.. ..+|+++++|||....+....+.+++.++++++ +.|+ +++||+ .++.++||+++.++
T Consensus 130 ~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~----iivs~~-~~~~~~~d~v~~~~ 203 (212)
T cd03274 130 GGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQF----IVISLR-NNMFELADRLVGIY 203 (212)
T ss_pred HHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEE----EEEECc-HHHHHhCCEEEEEE
Confidence 347888999997752 115899999999777667777888889999854 5678 888898 57889999999987
Q ss_pred cch
Q 030566 159 CTH 161 (175)
Q Consensus 159 ~~~ 161 (175)
-.+
T Consensus 204 ~~~ 206 (212)
T cd03274 204 KTN 206 (212)
T ss_pred ecC
Confidence 554
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-19 Score=153.34 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=101.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC--cccc-----cCC---------CC---ccCCcc-hhccHH-
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD--PAAE-----NFD---------YP---VAMDIR-ELISLE- 60 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~--~~~~-----~~~---------~~---~~~~~~-~~~~~~- 60 (175)
|..+||+|+||+|||||||+|+. |.|.....+ .+.. ... +. ..++.. +.-...
T Consensus 106 GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~ 179 (582)
T KOG0062|consen 106 GRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYD 179 (582)
T ss_pred ccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHH
Confidence 78899999999999999999987 334322111 0000 000 00 000011 000111
Q ss_pred HHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEe
Q 030566 61 DVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (175)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l 138 (175)
+++..++|.++.. ..+..++| -+.|.+||||+.. +|++|+||||+...+..+..|+.+.|..+ +.|+ +
T Consensus 180 ~~L~glGFt~emq-~~pt~slSGGWrMrlaLARAlf~--~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~----l 249 (582)
T KOG0062|consen 180 KILAGLGFTPEMQ-LQPTKSLSGGWRMRLALARALFA--KPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITS----L 249 (582)
T ss_pred HHHHhCCCCHHHH-hccccccCcchhhHHHHHHHHhc--CCCEEeecCCcccchhHHHHHHHHHHhhC---CceE----E
Confidence 2555677776542 22334455 6788999999999 99999999997776666666777777665 4799 9
Q ss_pred eeccchhhhhcCCCceeEeccc-hhhHHhhhhcc
Q 030566 139 LDSQVCIRFRTLPPCIVCFCCT-HTVVQRAYSFL 171 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 171 (175)
++||+-......|..|+.+++. -..|.++|+-|
T Consensus 250 iVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 250 IVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred EEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 9999999999999888887764 35566665544
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.5e-19 Score=148.86 Aligned_cols=160 Identities=15% Similarity=0.143 Sum_probs=107.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc---ccc----CCC--------CccCC-cchhccHHHHHHH
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---AEN----FDY--------PVAMD-IRELISLEDVMEE 65 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~---~~~----~~~--------~~~~~-~~~~~~~~~~~~~ 65 (175)
++.+++|||||||||||+|+++|.+.|..|.|.-.-...- .+. ..+ .+.+. ..+.-....++..
T Consensus 416 ~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgr 495 (614)
T KOG0927|consen 416 DSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGR 495 (614)
T ss_pred ccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHH
Confidence 5789999999999999999999999999999975322110 000 000 01111 1222234667788
Q ss_pred hCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccc
Q 030566 66 LGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQV 143 (175)
Q Consensus 66 ~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~ 143 (175)
+++.... ...+...+| ++.++.+++.+.+ .|.+|+||||+...+....+.+.+.|.++ ..+| +++||+
T Consensus 496 fgLtgd~-q~~p~~~LS~Gqr~rVlFa~l~~k--qP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggv----v~vSHD 565 (614)
T KOG0927|consen 496 FGLTGDA-QVVPMSQLSDGQRRRVLFARLAVK--QPHLLLLDEPTNHLDIETIDALAEAINEF---PGGV----VLVSHD 565 (614)
T ss_pred hCCCccc-cccchhhcccccchhHHHHHHHhc--CCcEEEecCCCcCCCchhHHHHHHHHhcc---CCce----eeeech
Confidence 8887554 233445555 7778888998888 99999999995555555444555555443 4589 999999
Q ss_pred hhhhhcCCCceeEeccch-hhHHhhhhcc
Q 030566 144 CIRFRTLPPCIVCFCCTH-TVVQRAYSFL 171 (175)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 171 (175)
+..+...++.++.+..+. ....++|..|
T Consensus 566 frlI~qVaeEi~~c~~~~~~~~~G~i~~y 594 (614)
T KOG0927|consen 566 FRLISQVAEEIWVCENGTVTKWDGDIEIY 594 (614)
T ss_pred hhHHHHHHHHhHhhccCceeecCccHHHH
Confidence 999999998777665543 3444554443
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.7e-18 Score=142.20 Aligned_cols=153 Identities=13% Similarity=0.077 Sum_probs=102.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCC------cchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMD------IRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~------~~~~~~--------- 58 (175)
.|++++++||+||||||++|++..++..++|.|.+||+|++. ..++.+|.-+ ...++.
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~Asne 642 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNE 642 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChH
Confidence 489999999999999999999999999999999999999743 3344444211 111111
Q ss_pred ----H---HHHHHH-hCCCCCCchhhh--H--HHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ----L---EDVMEE-LGLGPNGGLIYC--M--EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ----~---~~~~~~-~~l~~~~~~~~~--~--~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
. ..+-+. +.++..-..+.. . -+..++||.++||.+.+ +|.+++|||.+...+.+....++..+.++
T Consensus 643 evyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK--~P~iIlLDEATSALDT~tER~IQaaL~rl 720 (790)
T KOG0056|consen 643 EVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILK--APSIILLDEATSALDTNTERAIQAALARL 720 (790)
T ss_pred HHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhc--CCcEEEEcchhhhcCCccHHHHHHHHHHH
Confidence 1 112222 223221111111 0 12238999999999999 99999999995555555555666678887
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccch
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
+. +.|. +++.|++..+- -+|.+.+++.|.
T Consensus 721 ca-~RTt----IVvAHRLSTiv-nAD~ILvi~~G~ 749 (790)
T KOG0056|consen 721 CA-NRTT----IVVAHRLSTIV-NADLILVISNGR 749 (790)
T ss_pred hc-CCce----EEEeeeehhee-cccEEEEEeCCe
Confidence 65 5677 77788887763 457677766554
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.9e-18 Score=130.54 Aligned_cols=129 Identities=14% Similarity=0.103 Sum_probs=77.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHHH
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (175)
|++++|+||||||||||+|+|+|...- ...|.++.... +.+ +....+...++.+++.++... . ..+.
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l-----~~~G~~v~a~~--~~~--q~~~l~~~~~~~d~l~~~~s~---~-~~e~ 91 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVIL-----AQAGAPVCASS--FEL--PPVKIFTSIRVSDDLRDGISY---F-YAEL 91 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHH-----HHcCCEEecCc--cCc--ccceEEEeccchhccccccCh---H-HHHH
Confidence 789999999999999999999986531 12233222211 122 223344444555655443321 1 1111
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccch-HHHHHHHHHHhCCCcEEEEEeeeccchhhhhcC
Q 030566 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVP-VLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTL 150 (175)
Q Consensus 82 ~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~-~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~ 150 (175)
++.+..+.+.-.. +|+++++|||.......... ....+++.+++.+.|+ +++||+++.+...
T Consensus 92 -~~~~~iL~~~~~~--~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~ti----iivTH~~~~~~~~ 154 (199)
T cd03283 92 -RRLKEIVEKAKKG--EPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIG----IISTHDLELADLL 154 (199)
T ss_pred -HHHHHHHHhccCC--CCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEE----EEEcCcHHHHHhh
Confidence 2333333332223 89999999994443333333 3345677777778899 9999999988665
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.9e-18 Score=155.81 Aligned_cols=161 Identities=19% Similarity=0.183 Sum_probs=116.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhcc---------HHHHHHHhCCCCC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLGPN 71 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~ 71 (175)
+|+.+|++|+-|||||+|+.+|.|..+..+|++.++|.-.--.+..|...-++++++- ..++++.-.+.++
T Consensus 546 ~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~D 625 (1381)
T KOG0054|consen 546 KGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKD 625 (1381)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhH
Confidence 4999999999999999999999999999999999998632222223333335555543 3344443333221
Q ss_pred C------ch---hhhH--HHHHHHHHHHHHHHhhccCCCCEEEEeCC-CcccccccchHHHHHHHHHHhCCCcEEEEEee
Q 030566 72 G------GL---IYCM--EHLEDNLDDWLAEELDNYLDDDYLVFDCP-GQIELFTHVPVLRNFVDHLKSRNFNVCAVYLL 139 (175)
Q Consensus 72 ~------~~---~~~~--~~~~~~~~~~l~~~l~~~~~p~lliLDEP-~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~ 139 (175)
. .. ..+. -+.+||||..||||+.+ ++++++||.| +..|.-.+.+.+.+.++.+ -+++|+ ++
T Consensus 626 le~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~--~adIYLLDDplSAVDahvg~~if~~ci~~~-L~~KT~----IL 698 (1381)
T KOG0054|consen 626 LEILPFGDLTEIGERGINLSGGQKQRISLARAVYQ--DADIYLLDDPLSAVDAHVGKHIFEECIRGL-LRGKTV----IL 698 (1381)
T ss_pred HhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhc--cCCEEEEcCcchhhhHhhhHHHHHHHHHhh-hcCCEE----EE
Confidence 1 00 0011 12349999999999999 9999999999 5555555666667777544 357899 99
Q ss_pred eccchhhhhcCCCceeEeccchhhHHhhhh
Q 030566 140 DSQVCIRFRTLPPCIVCFCCTHTVVQRAYS 169 (175)
Q Consensus 140 ~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (175)
+||.++ ....+|.+++|+.|..+-+++|.
T Consensus 699 VTHql~-~L~~ad~Iivl~~G~I~~~Gty~ 727 (1381)
T KOG0054|consen 699 VTHQLQ-FLPHADQIIVLKDGKIVESGTYE 727 (1381)
T ss_pred EeCchh-hhhhCCEEEEecCCeEecccCHH
Confidence 999765 55888999999999999988875
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-17 Score=154.02 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=106.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCC------------CccCCcchhccHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------------PVAMDIRELISLED 61 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~------------~~~~~~~~~~~~~~ 61 (175)
.||-+||+|+.|||||||..++..+..|.+|+|.|||.|+.. ...+. ...+++.+.+...+
T Consensus 1165 p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~ 1244 (1381)
T KOG0054|consen 1165 PGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDE 1244 (1381)
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHH
Confidence 389999999999999999999999999999999999988633 11111 12234444444333
Q ss_pred HHH---HhCC---------CCCCchhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 62 VME---ELGL---------GPNGGLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 62 ~~~---~~~l---------~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
+.+ ...+ +.+.......+ +.+|||-..|+|++.+ ++++++|||.++..+...-..+++.|++-
T Consensus 1245 IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr--~skILvLDEATAsVD~~TD~lIQ~tIR~~- 1321 (1381)
T KOG0054|consen 1245 IWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR--KSKILVLDEATASVDPETDALIQKTIREE- 1321 (1381)
T ss_pred HHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc--cCCEEEEecccccCChHHHHHHHHHHHHH-
Confidence 222 2211 11110011112 3348888899999999 99999999995544444333445555542
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
-+++|| +-+-|++..+.+. |++.+|+.|.++
T Consensus 1322 F~dcTV----ltIAHRl~TVmd~-DrVlVld~G~v~ 1352 (1381)
T KOG0054|consen 1322 FKDCTV----LTIAHRLNTVMDS-DRVLVLDAGRVV 1352 (1381)
T ss_pred hcCCeE----EEEeeccchhhhc-CeEEEeeCCeEe
Confidence 247999 9999999999876 999999998765
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-17 Score=124.46 Aligned_cols=72 Identities=6% Similarity=-0.052 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHh----hccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC--C-CcEEEEEeeeccchhhhhcCCCc
Q 030566 81 LEDNLDDWLAEEL----DNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR--N-FNVCAVYLLDSQVCIRFRTLPPC 153 (175)
Q Consensus 81 ~~~~~~~~l~~~l----~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~--g-~tvli~~l~~sH~~~~~~~~~~~ 153 (175)
..++++..+++++ +. +|++++||||...........+.+++.++.++ + .|| +++||+++++.++ |+
T Consensus 112 ~G~k~r~~ia~al~~~~~~--~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~i----ii~th~~~~i~~~-d~ 184 (198)
T cd03276 112 GGERSFSTVCLLLSLWEVM--ESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFI----FITPQDISGLASS-DD 184 (198)
T ss_pred hhHHHHHHHHHHHHHhccc--CCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEE----EEECCcccccccc-cc
Confidence 3478888888887 46 99999999996666666666777788776443 3 477 8999999999887 99
Q ss_pred eeEecc
Q 030566 154 IVCFCC 159 (175)
Q Consensus 154 ~~~~~~ 159 (175)
+.+|.-
T Consensus 185 v~~~~~ 190 (198)
T cd03276 185 VKVFRM 190 (198)
T ss_pred eeEEEe
Confidence 988865
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-17 Score=139.48 Aligned_cols=154 Identities=19% Similarity=0.163 Sum_probs=107.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------------------ccC---------CCCccC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------------ENF---------DYPVAM 51 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------------------~~~---------~~~~~~ 51 (175)
.|.++||+|+||-||||-+|+|+|.++|.=|+-. +.+-.. .+. .+.|..
T Consensus 99 ~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~--~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 99 PGKVVGILGPNGIGKSTALKILAGELKPNLGRYE--DPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCcEEEEEcCCCccHHHHHHHHhCccccCCCCCC--CCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 4899999999999999999999999999877542 111000 000 000100
Q ss_pred ---Ccchhcc-------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH
Q 030566 52 ---DIRELIS-------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL 119 (175)
Q Consensus 52 ---~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~ 119 (175)
++.+.+. ..++.+.+++..-.. .....+| +.||.+++.++.+ +++++++|||+.-.+...+-..
T Consensus 177 ~KG~v~elLk~~de~g~~devve~l~L~nvl~--r~v~~LSGGELQr~aIaa~l~r--dADvY~FDEpsSyLDi~qRl~~ 252 (591)
T COG1245 177 VKGKVGELLKKVDERGKFDEVVERLGLENVLD--RDVSELSGGELQRVAIAAALLR--DADVYFFDEPSSYLDIRQRLNA 252 (591)
T ss_pred hcchHHHHHHhhhhcCcHHHHHHHhcchhhhh--hhhhhcCchHHHHHHHHHHHhc--cCCEEEEcCCcccccHHHHHHH
Confidence 1122221 356667676654332 2334444 8899999999999 9999999999555555545556
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 120 RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 120 ~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
..+++++.+.+++| +++.|++.....++|.+-++.+.+.+|
T Consensus 253 ar~Irel~~~~k~V----iVVEHDLavLD~lsD~vhI~YG~pg~Y 293 (591)
T COG1245 253 ARVIRELAEDGKYV----IVVEHDLAVLDYLSDFVHILYGEPGVY 293 (591)
T ss_pred HHHHHHHhccCCeE----EEEechHHHHHHhhheeEEEecCCccc
Confidence 67899998878999 999999999988888777777665544
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-17 Score=126.69 Aligned_cols=135 Identities=11% Similarity=0.006 Sum_probs=82.1
Q ss_pred C-eEEEEECCCCCcHHHHHHHHH--------ccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCC
Q 030566 2 G-YAQLVIGPAGSGKSTYCSSLY--------RHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNG 72 (175)
Q Consensus 2 G-ei~~liG~NGsGKSTLlk~i~--------gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 72 (175)
| ++++|.||||||||||+|.|+ |...|....+. ..+.. +....+... +.+.
T Consensus 27 ~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~----------~~~~~--~~~~~lg~~---~~l~----- 86 (200)
T cd03280 27 NKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSS----------LPVFE--NIFADIGDE---QSIE----- 86 (200)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccccc----------CcCcc--EEEEecCch---hhhh-----
Confidence 5 489999999999999999998 54444322111 11111 111111110 0000
Q ss_pred chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH-HHHHHHHHhCCCcEEEEEeeeccchhhhhcCC
Q 030566 73 GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL-RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLP 151 (175)
Q Consensus 73 ~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~-~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~ 151 (175)
......+..++++..+.+. .. +|+++++|||...........+ ..+++++++++.++ +++||+ .++..++
T Consensus 87 -~~~s~fs~g~~~~~~i~~~-~~--~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~v----i~~tH~-~~l~~~~ 157 (200)
T cd03280 87 -QSLSTFSSHMKNIARILQH-AD--PDSLVLLDELGSGTDPVEGAALAIAILEELLERGALV----IATTHY-GELKAYA 157 (200)
T ss_pred -cCcchHHHHHHHHHHHHHh-CC--CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEE----EEECCH-HHHHHHH
Confidence 0011112234454455544 35 9999999999555445444445 35677777778899 999998 5677899
Q ss_pred CceeEeccchhhHH
Q 030566 152 PCIVCFCCTHTVVQ 165 (175)
Q Consensus 152 ~~~~~~~~~~~~~~ 165 (175)
+++..+..+..+..
T Consensus 158 d~~~~l~~g~l~~~ 171 (200)
T cd03280 158 YKREGVENASMEFD 171 (200)
T ss_pred hcCCCeEEEEEEEe
Confidence 99888887766544
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-17 Score=140.69 Aligned_cols=163 Identities=15% Similarity=0.188 Sum_probs=105.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEe----ecCccccc-CCCC--cc-------------C--C--c----
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV----NLDPAAEN-FDYP--VA-------------M--D--I---- 53 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~----g~~~~~~~-~~~~--~~-------------~--~--~---- 53 (175)
|+.+||+|+|||||||++++|+|-..|..=.+-+. +..+.... +... +. + + .
T Consensus 101 g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~ 180 (614)
T KOG0927|consen 101 GRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKD 180 (614)
T ss_pred CceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhh
Confidence 89999999999999999999999888755444331 11111100 0000 00 0 0 0
Q ss_pred -------------chhcc--HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccc
Q 030566 54 -------------RELIS--LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHV 116 (175)
Q Consensus 54 -------------~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~ 116 (175)
.+.+. ...++..+++..... ......+| ++.|.+|+|++.. +|++|+||||+...+..+.
T Consensus 181 ~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~-~k~~~~~SgGwrmR~aLAr~Lf~--kP~LLLLDEPtnhLDleA~ 257 (614)
T KOG0927|consen 181 ELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQ-DKKVKDLSGGWRMRAALARALFQ--KPDLLLLDEPTNHLDLEAI 257 (614)
T ss_pred HHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHH-HHHhhccCchHHHHHHHHHHHhc--CCCEEEecCCccCCCHHHH
Confidence 00000 112222233322221 11122233 6788999999999 9999999999666666656
Q ss_pred hHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccch-hhHHhhhhcccc
Q 030566 117 PVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH-TVVQRAYSFLFH 173 (175)
Q Consensus 117 ~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 173 (175)
.++.+.|.++.. + ++ ++++|.-+.+-.+|.+|+.+.... .+|+++|.-|-.
T Consensus 258 ~wLee~L~k~d~-~-~l----Vi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~~ 309 (614)
T KOG0927|consen 258 VWLEEYLAKYDR-I-IL----VIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVK 309 (614)
T ss_pred HHHHHHHHhccC-c-eE----EEEecchhhhhhHhhhhheecccceeeecCCHHHHhh
Confidence 667777766522 2 67 899999999999999999999999 888888876643
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.8e-17 Score=129.76 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=79.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccc----cC----CCCccCCcchhccHHHHHHHhCCCCCCch
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE----NF----DYPVAMDIRELISLEDVMEELGLGPNGGL 74 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 74 (175)
.-++|+||||||||||+++|+|+++|++|++.++|+++... .+ .+.+. ..++.....
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q---------------~~~~~r~~v 176 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQ---------------HDVGIRTDV 176 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccc---------------ccccccccc
Confidence 35799999999999999999999999999999999876421 00 11110 011110000
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccc--hhhh-----
Q 030566 75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQV--CIRF----- 147 (175)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~--~~~~----- 147 (175)
. +. ..+........... +|+++++|||...+. +..+++.++ +|.++ +++||+ ++++
T Consensus 177 ~---~~-~~k~~~~~~~i~~~--~P~villDE~~~~e~------~~~l~~~~~-~G~~v----I~ttH~~~~~~~~~r~~ 239 (270)
T TIGR02858 177 L---DG-CPKAEGMMMLIRSM--SPDVIVVDEIGREED------VEALLEALH-AGVSI----IATAHGRDVEDLYKRPV 239 (270)
T ss_pred c---cc-chHHHHHHHHHHhC--CCCEEEEeCCCcHHH------HHHHHHHHh-CCCEE----EEEechhHHHHHHhChH
Confidence 0 00 01111222223335 999999999944332 223555554 68999 999995 4335
Q ss_pred ------hcCCCceeEeccch
Q 030566 148 ------RTLPPCIVCFCCTH 161 (175)
Q Consensus 148 ------~~~~~~~~~~~~~~ 161 (175)
..+++++++|+.+.
T Consensus 240 ~~~l~~~~~~~r~i~L~~~~ 259 (270)
T TIGR02858 240 FKELIENEAFERYVVLSRRK 259 (270)
T ss_pred HHHHHhcCceEEEEEEecCC
Confidence 36789999998764
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-17 Score=134.44 Aligned_cols=154 Identities=14% Similarity=0.101 Sum_probs=103.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcc------hhcc----------
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIR------ELIS---------- 58 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~------~~~~---------- 58 (175)
|+.++++||+|+||||+++.+...+.+++|.|.++|++++. +.++..|.-++. .++.
T Consensus 289 g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~ee 368 (497)
T COG5265 289 GKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEE 368 (497)
T ss_pred ccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHH
Confidence 89999999999999999999999999999999999998643 223433321111 0000
Q ss_pred ---------HHHHHHHhCCCCC--CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 ---------LEDVMEELGLGPN--GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 ---------~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
...+.+.+.-+.. ....--.-+..+|||.+++|.+.+ +|++++|||.+...+.+..+.++.-|++..
T Consensus 369 v~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk--~p~il~~deatsaldt~te~~iq~~l~~~~ 446 (497)
T COG5265 369 VGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK--NPPILILDEATSALDTHTEQAIQAALREVS 446 (497)
T ss_pred HHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc--CCCEEEEehhhhHhhhhHHHHHHHHHHHHh
Confidence 0111111110000 000000112238999999999999 999999999944444444455666777764
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
.|.|. +++-|++..+.+ +|.+++++.|..+
T Consensus 447 -~~rtt----lviahrlsti~~-adeiivl~~g~i~ 476 (497)
T COG5265 447 -AGRTT----LVIAHRLSTIID-ADEIIVLDNGRIV 476 (497)
T ss_pred -CCCeE----EEEeehhhhccC-CceEEEeeCCEEE
Confidence 58899 899999988755 5888888887654
|
|
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-16 Score=122.73 Aligned_cols=159 Identities=49% Similarity=0.876 Sum_probs=135.5
Q ss_pred EEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHHHHHH
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDN 84 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 84 (175)
..+|||+||||||.+.-+..++....-.+.+-+.||......|.+..++.+.+...++++..+++++.......+.+...
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~~ 84 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEAN 84 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHhh
Confidence 57899999999999999888887665557777889999999999999999999999999999999999888778888777
Q ss_pred HHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 85 LDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 85 ~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
. .|+...+.. ..-.++++|.|+|.+++.+-+.++++++.+.+.+.....+.++++|...+-.++++ .++-+..++.
T Consensus 85 i-dwl~~~l~~-~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl 160 (290)
T KOG1533|consen 85 I-DWLLEKLKP-LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATML 160 (290)
T ss_pred h-HHHHHHhhh-ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHH
Confidence 7 565554443 25679999999999999999999999999988899999999999999999999988 5555666666
Q ss_pred Hhh
Q 030566 165 QRA 167 (175)
Q Consensus 165 ~~~ 167 (175)
+++
T Consensus 161 ~me 163 (290)
T KOG1533|consen 161 HME 163 (290)
T ss_pred hhc
Confidence 654
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.5e-17 Score=124.36 Aligned_cols=142 Identities=16% Similarity=0.090 Sum_probs=76.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcc-CccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl-~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+|++++|+||||||||||+|+|++. +.+..|..... ......+.. +....+... +.+. ....
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~----~~~~i~~~d--qi~~~~~~~---d~i~--------~~~s 90 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA----ESASIPLVD--RIFTRIGAE---DSIS--------DGRS 90 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc----cccccCCcC--EEEEEecCc---cccc--------CCce
Confidence 3789999999999999999999954 33334432110 111122211 111111100 0000 0001
Q ss_pred HHH-HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH-HHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEe
Q 030566 80 HLE-DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL-RNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 80 ~~~-~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~-~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
.++ +.++......... +|+++++|||...........+ +.+++.+++.+.++ +++||+.+.+ ..++.+..+
T Consensus 91 ~~~~e~~~l~~i~~~~~--~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~v----i~~tH~~~~~-~~~~~~~~l 163 (202)
T cd03243 91 TFMAELLELKEILSLAT--PRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRT----LFATHFHELA-DLPEQVPGV 163 (202)
T ss_pred eHHHHHHHHHHHHHhcc--CCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeE----EEECChHHHH-HHhhcCCCe
Confidence 122 2232333334455 9999999999444333333333 44567777778899 9999997655 466655555
Q ss_pred ccchhhHHh
Q 030566 158 CCTHTVVQR 166 (175)
Q Consensus 158 ~~~~~~~~~ 166 (175)
...+...+.
T Consensus 164 ~~~~~~~~~ 172 (202)
T cd03243 164 KNLHMEELI 172 (202)
T ss_pred EEEEEEEEe
Confidence 554444433
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.3e-16 Score=115.96 Aligned_cols=78 Identities=9% Similarity=-0.032 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhhc--cCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEe
Q 030566 80 HLEDNLDDWLAEELDN--YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~--~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
+..++++..+++++.. +.+|+++++|||.........+.+.+.+.++.++|.|+ +++||+.+.+ ..+|+++.+
T Consensus 96 S~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~ti----IiiSH~~~~~-~~adrvi~i 170 (178)
T cd03239 96 SGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQF----IVITLKKEMF-ENADKLIGV 170 (178)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE----EEEECCHHHH-hhCCeEEEE
Confidence 3457888899997752 23999999999966666666777778888887667899 9999998776 579999888
Q ss_pred ccchh
Q 030566 158 CCTHT 162 (175)
Q Consensus 158 ~~~~~ 162 (175)
+..+.
T Consensus 171 ~~~~~ 175 (178)
T cd03239 171 LFVHG 175 (178)
T ss_pred EEeCC
Confidence 76443
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.8e-17 Score=148.23 Aligned_cols=159 Identities=17% Similarity=0.141 Sum_probs=104.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc--cccceeEEeecCccc----ccCCCCc-------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDPAA----ENFDYPV-------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~--~~~G~I~i~g~~~~~----~~~~~~~-------~~~~~~~~~--------- 58 (175)
+|-..||+|+|||||||||++|+|=.. ..+|+|.++|.+..+ +..+|+. .+++++.+.
T Consensus 816 PG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~ 895 (1391)
T KOG0065|consen 816 PGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPK 895 (1391)
T ss_pred CCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCC
Confidence 478899999999999999999999743 568999999987542 2233332 334444432
Q ss_pred ----------HHHHHHHhCCCCCCchhhh--H--HHHHHHHHHHHHHHhhccCCC-CEEEEeCCCcccccccchHHHHHH
Q 030566 59 ----------LEDVMEELGLGPNGGLIYC--M--EHLEDNLDDWLAEELDNYLDD-DYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 59 ----------~~~~~~~~~l~~~~~~~~~--~--~~~~~~~~~~l~~~l~~~~~p-~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
.++|++.+++......... . -+.+||.|..++-.|.. +| .+|+||||+...+......+.+++
T Consensus 896 ~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA--~P~~ilFLDEPTSGLDsqaA~~i~~~l 973 (1391)
T KOG0065|consen 896 EVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVA--NPSSILFLDEPTSGLDSQAAAIVMRFL 973 (1391)
T ss_pred cCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEec--CCceeEEecCCCCCccHHHHHHHHHHH
Confidence 2455555555432111110 0 12235555555556666 99 899999996666666666788899
Q ss_pred HHHHhCCCcEEEEEeeeccchh-hhhcCCCceeEecc-chhhHH
Q 030566 124 DHLKSRNFNVCAVYLLDSQVCI-RFRTLPPCIVCFCC-THTVVQ 165 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~-~~~~~~~~~~~~~~-~~~~~~ 165 (175)
++++..|.|| +-+-|+.. ++-+..|++++|.. |.+||-
T Consensus 974 rkla~tGqtI----lCTIHQPS~~ife~FD~LLLLkrGGqtVY~ 1013 (1391)
T KOG0065|consen 974 RKLADTGQTI----LCTIHQPSIDIFEAFDELLLLKRGGQTVYF 1013 (1391)
T ss_pred HHHHhcCCeE----EEEecCCcHHHHHHHhHHHHHhcCCeEEEe
Confidence 9999999999 66667654 34455577777653 444443
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=144.39 Aligned_cols=72 Identities=14% Similarity=0.040 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhh---ccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeE
Q 030566 80 HLEDNLDDWLAEELD---NYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVC 156 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~---~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~ 156 (175)
+..++||..+++++. . +|+++|||||+........+.+.+++++++++|.|| +++||+++++ +.+|+++.
T Consensus 811 SGGE~QRV~LAraL~~~~~--~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TV----IiIsHdl~~i-~~aDrVi~ 883 (1809)
T PRK00635 811 SGGEIQRLKLAYELLAPSK--KPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTV----VIIEHNMHVV-KVADYVLE 883 (1809)
T ss_pred CHHHHHHHHHHHHHhhcCC--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE----EEEeCCHHHH-HhCCEEEE
Confidence 344899999999986 5 999999999977766777778888999998889999 9999999998 89999999
Q ss_pred ec
Q 030566 157 FC 158 (175)
Q Consensus 157 ~~ 158 (175)
|.
T Consensus 884 L~ 885 (1809)
T PRK00635 884 LG 885 (1809)
T ss_pred Ec
Confidence 95
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-15 Score=137.51 Aligned_cols=81 Identities=15% Similarity=0.091 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhhc-cCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEe-
Q 030566 80 HLEDNLDDWLAEELDN-YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCF- 157 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~-~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~- 157 (175)
+..++||..+++++.. ..+|++++||||+..........+.+++++++++|.|| ++++|+++.+. .+|+++.|
T Consensus 830 SgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TV----Ivi~H~~~~i~-~aD~ii~Lg 904 (924)
T TIGR00630 830 SGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTV----VVIEHNLDVIK-TADYIIDLG 904 (924)
T ss_pred CHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE----EEEeCCHHHHH-hCCEEEEec
Confidence 3348899999999885 11489999999966666777778888999998889999 99999999884 69999999
Q ss_pred -----ccchhhHH
Q 030566 158 -----CCTHTVVQ 165 (175)
Q Consensus 158 -----~~~~~~~~ 165 (175)
..|..+.+
T Consensus 905 p~~G~~gG~iv~~ 917 (924)
T TIGR00630 905 PEGGDGGGTIVAS 917 (924)
T ss_pred CCccCCCCEEEEe
Confidence 45555543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=112.69 Aligned_cols=133 Identities=13% Similarity=0.003 Sum_probs=85.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCC-CccCCcchhccHHHHHHHhCCCCCCchhhhHHHH
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (175)
.+.+|+|||||||||+++++....-...|.+.... .. ..+. .+.... .+ +..... -+.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~---~~g~~~~~~~~--~~----i~~~~~-----------lS~ 80 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV---KAGCIVAAVSA--EL----IFTRLQ-----------LSG 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc---cCCCcceeeEE--EE----ehheee-----------ccc
Confidence 48999999999999999998777665555544311 10 1111 110000 00 000000 111
Q ss_pred HHHHHHHHHHHhhcc--CCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEecc
Q 030566 82 EDNLDDWLAEELDNY--LDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 82 ~~~~~~~l~~~l~~~--~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
.++++..+++++... .+|+++++|||...........+...+.++.+++.++ +++||+.+... .+|+++.+..
T Consensus 81 G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~v----ii~TH~~~~~~-~~d~~~~l~~ 155 (162)
T cd03227 81 GEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV----IVITHLPELAE-LADKLIHIKK 155 (162)
T ss_pred cHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE----EEEcCCHHHHH-hhhhEEEEEE
Confidence 266667778877642 2789999999966655555666666777765557889 99999999875 5899988877
Q ss_pred ch
Q 030566 160 TH 161 (175)
Q Consensus 160 ~~ 161 (175)
.+
T Consensus 156 ~~ 157 (162)
T cd03227 156 VI 157 (162)
T ss_pred Ee
Confidence 65
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-16 Score=120.66 Aligned_cols=158 Identities=19% Similarity=0.217 Sum_probs=95.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc----ccceeEEeecCc-----cc------ccCCCCcc-----CCcc------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDP-----AA------ENFDYPVA-----MDIR------ 54 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~----~~G~I~i~g~~~-----~~------~~~~~~~~-----~~~~------ 54 (175)
|||+-|++|++|||||-..|+|+|..+. +.-..++++.+. ++ ++++..+. +++.
T Consensus 32 EGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~Q 111 (330)
T COG4170 32 EGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQ 111 (330)
T ss_pred cceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHH
Confidence 6999999999999999999999999863 234444554432 11 12222210 0000
Q ss_pred --hhcc------------------HHHHHHHhCCCCCCchhh-hHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCccc
Q 030566 55 --ELIS------------------LEDVMEELGLGPNGGLIY-CMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIE 111 (175)
Q Consensus 55 --~~~~------------------~~~~~~~~~l~~~~~~~~-~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~ 111 (175)
++++ .-+++..+++-.....+. ..+++ .+.|++.++.+++. .|.+||.|||+...
T Consensus 112 lIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~An--qPrLLIADEPTN~~ 189 (330)
T COG4170 112 LIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALAN--QPRLLIADEPTNSM 189 (330)
T ss_pred HHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhcc--CCceEeccCCCccc
Confidence 0000 112222333322111110 01111 14567788888888 99999999992221
Q ss_pred ccccchHHHHHHHHHHh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 112 LFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 112 ~~~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
.-.....+..++..+++ +|.|| +++||++..+.+.||++.++.||.++-
T Consensus 190 e~~Tq~QifRLLs~mNQn~~TtI----LL~s~Dl~~is~W~d~i~VlYCGQ~~E 239 (330)
T COG4170 190 EPTTQAQIFRLLSRLNQNSNTTI----LLISHDLQMISQWADKINVLYCGQTVE 239 (330)
T ss_pred CccHHHHHHHHHHHhhccCCceE----EEEcccHHHHHHHhhheEEEEeccccc
Confidence 11112223337777754 58888 999999999999999999999997764
|
|
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-15 Score=113.33 Aligned_cols=149 Identities=68% Similarity=1.243 Sum_probs=129.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHHH
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (175)
|--..+.||.||||||.++.+........-+..+-+.+|......|.+..+.++.+....++|.+.++++.......+.+
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl 82 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYL 82 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHHH
Confidence 44567899999999999999999988877789999999998888999888999999999999999999998877777777
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCC
Q 030566 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPP 152 (175)
Q Consensus 82 ~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~ 152 (175)
-+.. .|+...+-. .+-+++++|.|++.+++.+...+.++++.+++-+.-+..++++.|+.+-+..+|++
T Consensus 83 ~~Nl-dwL~~~~Gd-~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiS 151 (273)
T KOG1534|consen 83 LENL-DWLEEEIGD-VEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFIS 151 (273)
T ss_pred HHHH-HHHHhhccC-ccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHH
Confidence 6766 565654443 37899999999999999999999999999977677777888999999999998876
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-15 Score=116.58 Aligned_cols=73 Identities=8% Similarity=-0.092 Sum_probs=52.9
Q ss_pred HHHHHHHHHH----hhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-C-CcEEEEEeeeccchhhhhcCCC--ce
Q 030566 83 DNLDDWLAEE----LDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-N-FNVCAVYLLDSQVCIRFRTLPP--CI 154 (175)
Q Consensus 83 ~~~~~~l~~~----l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g-~tvli~~l~~sH~~~~~~~~~~--~~ 154 (175)
++++..++.. ++. +|+++++|||...........+.+.+.+++++ | .|+ +++||++.+...+++ ++
T Consensus 131 ~~q~~~i~~~la~~~~~--~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~v----iiith~~~~~~~~~~~~~v 204 (213)
T cd03277 131 ERSVSTMLYLLSLQELT--RCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQY----FLITPKLLPGLNYHEKMTV 204 (213)
T ss_pred HHHHHHHHHHHHHHhcc--CCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceE----EEEchhhccCCcccCceEE
Confidence 5555444433 245 99999999996666666677788888888665 5 578 999999988888887 55
Q ss_pred eEeccch
Q 030566 155 VCFCCTH 161 (175)
Q Consensus 155 ~~~~~~~ 161 (175)
.++..|+
T Consensus 205 ~~l~~g~ 211 (213)
T cd03277 205 LCVYNGP 211 (213)
T ss_pred EEEecCc
Confidence 5555443
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-15 Score=135.75 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhhccCCC---CEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeE
Q 030566 80 HLEDNLDDWLAEELDNYLDD---DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVC 156 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p---~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~ 156 (175)
+..++|+..+++++.. +| +++|||||+........+.+.+++++++++|.|| +++||+++.+. .+|+++.
T Consensus 832 SgGEkQRl~LAraL~~--~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TV----IiitH~~~~i~-~aD~ii~ 904 (943)
T PRK00349 832 SGGEAQRVKLAKELSK--RSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTV----VVIEHNLDVIK-TADWIID 904 (943)
T ss_pred CHHHHHHHHHHHHHhc--CCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE----EEEecCHHHHH-hCCEEEE
Confidence 3448999999999999 98 9999999966666667778888999988789999 99999999885 7999999
Q ss_pred ec
Q 030566 157 FC 158 (175)
Q Consensus 157 ~~ 158 (175)
+.
T Consensus 905 Lg 906 (943)
T PRK00349 905 LG 906 (943)
T ss_pred ec
Confidence 93
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-16 Score=124.04 Aligned_cols=143 Identities=57% Similarity=0.988 Sum_probs=100.0
Q ss_pred EECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHHHHHHHH
Q 030566 7 VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLD 86 (175)
Q Consensus 7 liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 86 (175)
++||.||||||+++.+...++-..-.+.+-+.||......|.+..+.++.+...+++++.+++++.......+.+....
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~- 79 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENI- 79 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGH-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHH-
Confidence 6899999999999999999877666688889999988888999999999999999999999999876666666666656
Q ss_pred HHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCC
Q 030566 87 DWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPP 152 (175)
Q Consensus 87 ~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~ 152 (175)
.|+...+... +++++|+|-|+|.+++.+.+.+..+++.+++ +..+++++++.++...+..++.+
T Consensus 80 d~l~~~i~~~-~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~-~~~~~~v~LvD~~~~~~~~~f~s 143 (238)
T PF03029_consen 80 DWLDEEIEKY-EDDYLLFDTPGQIELFTHSDSGRKIVERLQK-NGRLVVVFLVDSSFCSDPSKFVS 143 (238)
T ss_dssp HHHHHHHHHH-H-SEEEEE--SSHHHHHHSHHHHHHHHTSSS-----EEEEEE-GGG-SSHHHHHH
T ss_pred HHHHHHHhhc-CCcEEEEeCCCCEEEEEechhHHHHHHHHhh-hcceEEEEEEecccccChhhHHH
Confidence 5555555433 6699999999999999999999999999976 44555777999999988777765
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.1e-15 Score=128.50 Aligned_cols=137 Identities=15% Similarity=0.087 Sum_probs=87.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEe-ecCc--ccccCCCCccCCcchh---------cc---HHHHHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-NLDP--AAENFDYPVAMDIREL---------IS---LEDVMEE 65 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~-g~~~--~~~~~~~~~~~~~~~~---------~~---~~~~~~~ 65 (175)
.||-+-|.||||||||||+|+|+|+.|.-+|+|.+- +.+. -.+. .|.+.-+.++. +. ..+++..
T Consensus 418 ~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~-PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~ 496 (604)
T COG4178 418 PGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQR-PYLPQGTLREALCYPNAAPDFSDAELVAVLHK 496 (604)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCC-CCCCCccHHHHHhCCCCCCCCChHHHHHHHHH
Confidence 389999999999999999999999999999998764 2110 0011 11111111111 22 3445555
Q ss_pred hCCCCCC-------chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEe
Q 030566 66 LGLGPNG-------GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (175)
Q Consensus 66 ~~l~~~~-------~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l 138 (175)
++++... .+.. .-+..++||.++||.+.+ +|++++|||-+...+-+..+.+.+.+++- -.+.|| +
T Consensus 497 vgL~~L~~rl~~~~~W~~-vLS~GEqQRlafARilL~--kP~~v~LDEATsALDe~~e~~l~q~l~~~-lp~~tv----I 568 (604)
T COG4178 497 VGLGDLAERLDEEDRWDR-VLSGGEQQRLAFARLLLH--KPKWVFLDEATSALDEETEDRLYQLLKEE-LPDATV----I 568 (604)
T ss_pred cCcHHHHHHHhccCcHhh-hcChhHHHHHHHHHHHHc--CCCEEEEecchhccChHHHHHHHHHHHhh-CCCCEE----E
Confidence 5655321 1111 123348999999999999 99999999994444444344444444442 147888 8
Q ss_pred eeccchhh
Q 030566 139 LDSQVCIR 146 (175)
Q Consensus 139 ~~sH~~~~ 146 (175)
.++|....
T Consensus 569 SV~Hr~tl 576 (604)
T COG4178 569 SVGHRPTL 576 (604)
T ss_pred Eeccchhh
Confidence 89998553
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.9e-15 Score=113.85 Aligned_cols=128 Identities=14% Similarity=0.117 Sum_probs=72.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHHH
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (175)
|++++|+|||||||||++|+++++.-- +.+ |..+... ...++..+ .+...++..... ......+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~l--a~~---G~~vpa~----~~~l~~~d-----~I~~~~~~~d~~--~~~~S~f 92 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIM--AQI---GCFVPAE----YATLPIFN-----RLLSRLSNDDSM--ERNLSTF 92 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH--HHc---CCCcchh----hcCccChh-----heeEecCCcccc--chhhhHH
Confidence 789999999999999999999987421 011 1111000 01111111 112222222111 1122233
Q ss_pred HH-HHHHHHHHHhhccCCCCEEEEeCCCccc-ccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCC
Q 030566 82 ED-NLDDWLAEELDNYLDDDYLVFDCPGQIE-LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLP 151 (175)
Q Consensus 82 ~~-~~~~~l~~~l~~~~~p~lliLDEP~~~~-~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~ 151 (175)
+. ..+......... +|+++++|||.... ..++......+++.+.+.+.++ +++||+.+.+....
T Consensus 93 s~e~~~~~~il~~~~--~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~----i~~TH~~~l~~~~~ 158 (204)
T cd03282 93 ASEMSETAYILDYAD--GDSLVLIDELGRGTSSADGFAISLAILECLIKKESTV----FFATHFRDIAAILG 158 (204)
T ss_pred HHHHHHHHHHHHhcC--CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEE----EEECChHHHHHHhh
Confidence 32 222222234455 89999999993332 2233334456788887779999 99999999887655
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.8e-15 Score=112.74 Aligned_cols=159 Identities=15% Similarity=0.130 Sum_probs=103.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccc-------cCCC-----------CccCCcchhccHHH--
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDY-----------PVAMDIRELISLED-- 61 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~-------~~~~-----------~~~~~~~~~~~~~~-- 61 (175)
|....++|.||||||||+|+++|---.-.|.|.+.|.++-.. +..| ........-+....
T Consensus 40 gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi 119 (291)
T KOG2355|consen 40 GSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI 119 (291)
T ss_pred CceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccccccccccHHHHH
Confidence 677889999999999999999997655568999988765220 0111 00000011111111
Q ss_pred -------------HHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH-
Q 030566 62 -------------VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK- 127 (175)
Q Consensus 62 -------------~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~- 127 (175)
+.+.+++... ++.-.-+-.|+.|.-++.++.+ .=++|+|||-+...+.-++.-+.+++++-.
T Consensus 120 fgV~g~dp~Rre~LI~iLDIdl~--WRmHkvSDGqrRRVQicMGLL~--PfkVLLLDEVTVDLDVlARadLLeFlkeEce 195 (291)
T KOG2355|consen 120 FGVGGDDPERREKLIDILDIDLR--WRMHKVSDGQRRRVQICMGLLK--PFKVLLLDEVTVDLDVLARADLLEFLKEECE 195 (291)
T ss_pred hhccCCChhHhhhhhhheeccce--EEEeeccccchhhhHHHHhccc--ceeEEEeeeeEeehHHHHHHHHHHHHHHHHh
Confidence 2222222111 1111112236777888888887 779999999944443334444555777654
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
++|.|| ++.||..+-.++...+++++.+|.-+.+-.|
T Consensus 196 ~RgatI----VYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~ 232 (291)
T KOG2355|consen 196 QRGATI----VYATHIFDGLETWPTHLVYIKSGKLVDNLKY 232 (291)
T ss_pred hcCcEE----EEEeeeccchhhcchhEEEecCCeeeecccc
Confidence 569999 9999999999999999999999988775443
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-14 Score=120.59 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=120.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc-cc--------ccCCCCc----------cCCcchhcc---
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AA--------ENFDYPV----------AMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~-~~--------~~~~~~~----------~~~~~~~~~--- 58 (175)
.|||+||.|-.|-|-+-|+.+|+|+.++.+|+|.++|.+. .. ...++.| .++..+++.
T Consensus 283 ~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~ 362 (501)
T COG3845 283 AGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGR 362 (501)
T ss_pred cCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhh
Confidence 4999999999999999999999999999999999999875 11 1233333 222222221
Q ss_pred --------------------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccc
Q 030566 59 --------------------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHV 116 (175)
Q Consensus 59 --------------------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~ 116 (175)
..++.++++.-.... ..+..++| .+|+..++|.+.. +|++||+.+|++..+..+.
T Consensus 363 ~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~-~~~a~~LSGGNqQK~IlaREl~~--~p~lLI~~qPTrGLDvgA~ 439 (501)
T COG3845 363 HDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP-DAPARSLSGGNQQKLILARELAR--RPDLLIAAQPTRGLDVGAI 439 (501)
T ss_pred ccccccccccccCHHHHHHHHHHHHHHcCccCCCC-CcchhhcCCcceehhhhhhhhcc--CCCEEEEcCCCccccHHHH
Confidence 133445554432221 12234444 6688899999999 9999999999888888888
Q ss_pred hHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 117 PVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 117 ~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+.+.+.|.+.+++|++| +++|-+++|+..+|||+.++..|..+
T Consensus 440 ~~I~~~l~e~r~~G~AV----LLiS~dLDEil~lsDrIaVi~~Gri~ 482 (501)
T COG3845 440 EFIHERLLELRDAGKAV----LLISEDLDEILELSDRIAVIYEGRIV 482 (501)
T ss_pred HHHHHHHHHHHhcCCEE----EEEehhHHHHHHhhheeeeeeCCcee
Confidence 89999999999999999 99999999999999999999988755
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.7e-15 Score=114.61 Aligned_cols=137 Identities=11% Similarity=0.088 Sum_probs=74.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc-cccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+|++++|.||||||||||++.++-..- ...| .+.|.-. ...-....+++.+++.... .....
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g--------------~~vpa~~-~~~~~~~~il~~~~l~d~~--~~~lS 91 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIG--------------CFVPCDS-ADIPIVDCILARVGASDSQ--LKGVS 91 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHHHHhC--------------CCcCccc-EEEeccceeEeeeccccch--hcCcC
Confidence 378999999999999999999872200 0011 0111000 0000011222333333221 11111
Q ss_pred HHHHHHHHHHHHHh--hccCCCCEEEEeCCCcc-cccccchHHHHHHHHHHh-CCCcEEEEEeeeccchhhhhcCCCcee
Q 030566 80 HLEDNLDDWLAEEL--DNYLDDDYLVFDCPGQI-ELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIV 155 (175)
Q Consensus 80 ~~~~~~~~~l~~~l--~~~~~p~lliLDEP~~~-~~~~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~ 155 (175)
. .++++..+++.+ .. +|++++||||... .-.+.....+.+++.+.+ .+.++ +++||+ .++.++++++.
T Consensus 92 ~-~~~e~~~~a~il~~~~--~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~v----lisTH~-~el~~~~~~~~ 163 (222)
T cd03285 92 T-FMAEMLETAAILKSAT--ENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFC----LFATHF-HELTALADEVP 163 (222)
T ss_pred h-HHHHHHHHHHHHHhCC--CCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeE----EEEech-HHHHHHhhcCC
Confidence 1 133334445555 45 9999999999222 112222223345566654 47888 999995 88889999877
Q ss_pred Eeccchh
Q 030566 156 CFCCTHT 162 (175)
Q Consensus 156 ~~~~~~~ 162 (175)
.+..++.
T Consensus 164 ~i~~g~~ 170 (222)
T cd03285 164 NVKNLHV 170 (222)
T ss_pred CeEEEEE
Confidence 7766554
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.7e-14 Score=110.07 Aligned_cols=125 Identities=18% Similarity=0.114 Sum_probs=71.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHc--cCccccceeEEeecCcccccCCCCccCCcchhcc-HHHHHHHhCCCCCCchhhhHH
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYR--HCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS-LEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~g--l~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 79 (175)
.+++|.||||+|||||+|.++. +. +..|....... . ...+.. +....+. ..++.+.+ ..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~-~---~~~~~d--~i~~~l~~~~si~~~~-----------S~ 91 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADS-A---TIGLVD--KIFTRMSSRESVSSGQ-----------SA 91 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCC-c---EEeeee--eeeeeeCCccChhhcc-----------ch
Confidence 6899999999999999999984 33 45665543211 1 111111 1100000 00011100 01
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccc-cccchHHHHHHHHHHhC---CCcEEEEEeeeccchhhhhcCC
Q 030566 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIEL-FTHVPVLRNFVDHLKSR---NFNVCAVYLLDSQVCIRFRTLP 151 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~-~~~~~~~~~~l~~l~~~---g~tvli~~l~~sH~~~~~~~~~ 151 (175)
...+.++...++..+. +|+++++|||..... ..+......+++.+.++ +.++ +++||+.+.+....
T Consensus 92 f~~el~~l~~~l~~~~--~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~v----li~TH~~~l~~~~~ 161 (213)
T cd03281 92 FMIDLYQVSKALRLAT--RRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRV----IVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHHHhCC--CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEE----EEEcChHHHHHhhh
Confidence 1224455555666677 999999999943332 23344445677787654 2467 99999999887653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-14 Score=117.99 Aligned_cols=157 Identities=14% Similarity=0.098 Sum_probs=106.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcc--------CccccceeEEeecCccccc-CCCCccC---Ccchhc--------cHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRH--------CETVRRTMHIVNLDPAAEN-FDYPVAM---DIRELI--------SLE 60 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl--------~~~~~G~I~i~g~~~~~~~-~~~~~~~---~~~~~~--------~~~ 60 (175)
+||+++++|+|||||||+++.|+|. ++|++|.|.+--......- -.+.+.+ +..+.+ ...
T Consensus 408 pGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~Av 487 (593)
T COG2401 408 PGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAV 487 (593)
T ss_pred CCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHH
Confidence 5999999999999999999999986 5689999987433221110 0111111 122222 135
Q ss_pred HHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH-hCCCcEEEEE
Q 030566 61 DVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVY 137 (175)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-~~g~tvli~~ 137 (175)
+++...+++.......+..+++ |+-+..||+.+.. .|.+++.||-+...+......+..-+.+++ +.|.|.
T Consensus 488 eILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllae--rpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTl---- 561 (593)
T COG2401 488 EILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAE--RPNVLLIDEFAAHLDELTAVRVARKISELAREAGITL---- 561 (593)
T ss_pred HHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhc--CCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeE----
Confidence 6777777766554444555666 7777889999999 999999999933333333334445566664 568999
Q ss_pred eeeccchhhhhcC-CCceeEeccchhh
Q 030566 138 LLDSQVCIRFRTL-PPCIVCFCCTHTV 163 (175)
Q Consensus 138 l~~sH~~~~~~~~-~~~~~~~~~~~~~ 163 (175)
+++||+.+....+ .|++++.+=+...
T Consensus 562 ivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 562 IVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred EEEecCHHHHhccCCceeEEeeccccc
Confidence 9999999998888 5777776655443
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-14 Score=120.43 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=83.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCc---------c------CCcchhccHHHH---H
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPV---------A------MDIRELISLEDV---M 63 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~---------~------~~~~~~~~~~~~---~ 63 (175)
-..++|+||||.|||||++.+.|-+.|+.|+.+-+..- .+++.. . ++...+++..+. +
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL----~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~L 688 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRL----RIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQL 688 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCCCCCcchhhcccee----eeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHh
Confidence 35789999999999999999999999999988643210 111110 0 011122233333 3
Q ss_pred HHhCCCCCCchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeec
Q 030566 64 EELGLGPNGGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (175)
Q Consensus 64 ~~~~l~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~s 141 (175)
-.+++.... .......+ .++.|+.++...+. .|++||||||+........+.+.+.|.++ +..| +++|
T Consensus 689 G~fGL~sHA-HTikikdLSGGQKaRValaeLal~--~PDvlILDEPTNNLDIESIDALaEAIney---~GgV----i~Vs 758 (807)
T KOG0066|consen 689 GTFGLASHA-HTIKIKDLSGGQKARVALAELALG--GPDVLILDEPTNNLDIESIDALAEAINEY---NGGV----IMVS 758 (807)
T ss_pred hhhhhhhcc-ceEeeeecCCcchHHHHHHHHhcC--CCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcE----EEEe
Confidence 333433221 11111223 37788888887677 99999999996666666455555555443 5578 8999
Q ss_pred cchhhhhcC
Q 030566 142 QVCIRFRTL 150 (175)
Q Consensus 142 H~~~~~~~~ 150 (175)
|+-..+-+-
T Consensus 759 HDeRLi~eT 767 (807)
T KOG0066|consen 759 HDERLIVET 767 (807)
T ss_pred cccceeeec
Confidence 997765443
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-14 Score=122.41 Aligned_cols=147 Identities=18% Similarity=0.067 Sum_probs=101.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccC---------Ccch----hc------cHHHHHH
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAM---------DIRE----LI------SLEDVME 64 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~---------~~~~----~~------~~~~~~~ 64 (175)
.++++|+||+||||++|++.|-..|..|-+.+.+.- .+++.... +..+ .+ ....-+.
T Consensus 392 Ri~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~----ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~ 467 (582)
T KOG0062|consen 392 RISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRL----RIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLG 467 (582)
T ss_pred hhheeccCchhHHHHHHHHhccCCcccceeeecccc----eecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHH
Confidence 568999999999999999999999999988775432 11111100 0000 00 1344566
Q ss_pred HhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeecc
Q 030566 65 ELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (175)
Q Consensus 65 ~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH 142 (175)
.++++....... ...+| |+.|+.+|..... +|-+|+||||+...+++..+.+.+.| +.-+..| +++||
T Consensus 468 ~~Gl~g~la~~s-i~~LSGGQKsrvafA~~~~~--~PhlLVLDEPTNhLD~dsl~AL~~Al---~~F~GGV----v~VSH 537 (582)
T KOG0062|consen 468 SFGLSGELALQS-IASLSGGQKSRVAFAACTWN--NPHLLVLDEPTNHLDRDSLGALAKAL---KNFNGGV----VLVSH 537 (582)
T ss_pred hcCCCchhhhcc-ccccCCcchhHHHHHHHhcC--CCcEEEecCCCccccHHHHHHHHHHH---HhcCCcE----EEEEC
Confidence 677776653322 34455 7777777777777 99999999996665555444444444 4445579 99999
Q ss_pred chhhhhcCCCceeEeccchhhH
Q 030566 143 VCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
+.+.+...|.-+++.+.|.++.
T Consensus 538 d~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 538 DEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999887754
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-14 Score=108.92 Aligned_cols=126 Identities=15% Similarity=0.138 Sum_probs=67.9
Q ss_pred EEEEECCCCCcHHHHHHHHH-ccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHHHH
Q 030566 4 AQLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~-gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (175)
++.|.||||+||||++|.++ ..+-+..|...... .-.+.+.. ... ..++.... .......++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~----~~~~~~~d--~il---------~~~~~~d~--~~~~~s~fs 63 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAE----SAELPVFD--RIF---------TRIGASDS--LAQGLSTFM 63 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeeh----heEecccc--eEE---------EEeCCCCc--hhccccHHH
Confidence 46899999999999999998 34334444322110 01111111 111 11111111 111112333
Q ss_pred HHHHHHHHHHhhccCCCCEEEEeCCCcccccc-cchHHHHHHHHHHhC-CCcEEEEEeeeccchhhhhcCCC
Q 030566 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFT-HVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPP 152 (175)
Q Consensus 83 ~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~-~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~ 152 (175)
...+ .+++.+....+|+++++|||....... .....+.+++.+.++ +.++ +++||+.+ +.++++
T Consensus 64 ~~~~-~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~i----ii~TH~~~-l~~~~~ 129 (185)
T smart00534 64 VEMK-ETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALT----LFATHYHE-LTKLAD 129 (185)
T ss_pred HHHH-HHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeE----EEEecHHH-HHHHhh
Confidence 2221 134433333489999999994433333 333345567777664 8889 99999984 667765
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5e-15 Score=123.84 Aligned_cols=83 Identities=18% Similarity=0.117 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccch-
Q 030566 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH- 161 (175)
Q Consensus 83 ~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~- 161 (175)
.+.|..|+|++.. +|-+|.||||+.....++..|+.+.|.-|+ +|. +|+||+-....+.|..|+.+++-.
T Consensus 417 WRMRvSLARALfl--EPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTL----LIVSHDQgFLD~VCtdIIHLD~qkL 487 (807)
T KOG0066|consen 417 WRMRVSLARALFL--EPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTL----LIVSHDQGFLDSVCTDIIHLDNQKL 487 (807)
T ss_pred eeeehhHHHHHhc--CceeeeecCCccccccceeeehhhHHhhhh---hee----EEEecccchHHHHHHHHhhhhhhhh
Confidence 4567899999998 999999999988888888888889998884 489 999999999999999888887654
Q ss_pred hhHHhhhhccccc
Q 030566 162 TVVQRAYSFLFHM 174 (175)
Q Consensus 162 ~~~~~~~~~~~~~ 174 (175)
-+|-++|..|-+|
T Consensus 488 hyYrGNY~~FKKm 500 (807)
T KOG0066|consen 488 HYYRGNYTLFKKM 500 (807)
T ss_pred hhhcchHHHHHHH
Confidence 4566677766544
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.6e-14 Score=108.91 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=66.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCcc-ccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHHH
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~-~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (175)
++++|+|||||||||++|.++++.-. ..|.. .+.....+.+.. + .+....+.+++..+.. ...
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~----vp~~~~~i~~~~--~---i~~~~~~~~~ls~g~s-------~f~ 94 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSF----VPASKAEIGVVD--R---IFTRIGASDDLAGGRS-------TFM 94 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCCe----eccccceeccee--e---EeccCCchhhhccCcc-------hHH
Confidence 68999999999999999999875421 11211 011111222221 1 1111112222221110 001
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCCccc-ccccchHHHHHHHHHHhC-CCcEEEEEeeeccchhhhhcCCCcee
Q 030566 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIE-LFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIV 155 (175)
Q Consensus 82 ~~~~~~~l~~~l~~~~~p~lliLDEP~~~~-~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~ 155 (175)
.+.. .++..+....+|++++||||.... -.+.....+.+++.+.+. +.++ +++||+. ++.++++++.
T Consensus 95 ~e~~--~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~v----i~~TH~~-~l~~l~~~~~ 163 (216)
T cd03284 95 VEMV--ETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKT----LFATHYH-ELTELEGKLP 163 (216)
T ss_pred HHHH--HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcE----EEEeCcH-HHHHHhhcCC
Confidence 1222 122222222399999999992221 122222334567777666 8899 9999995 4555555443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.44 E-value=6e-13 Score=103.89 Aligned_cols=125 Identities=14% Similarity=0.143 Sum_probs=70.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc-cCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~g-l~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+|++++|.||||+||||++|++++ .+.+..|..... ... ...+.. +....+ + ..........
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a-~~~---~~~~~~--~i~~~~---------~--~~d~~~~~~S 92 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA-SSA---TLSIFD--SVLTRM---------G--ASDSIQHGMS 92 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc-Cce---EEeccc--eEEEEe---------c--Cccccccccc
Confidence 378999999999999999999999 667888875543 211 122221 111000 0 0000000001
Q ss_pred HHH-HHHHHHHHHHhhccCCCCEEEEeCCCcc-cccccchHHHHHHHHHHhC-CCcEEEEEeeeccchhhhh
Q 030566 80 HLE-DNLDDWLAEELDNYLDDDYLVFDCPGQI-ELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFR 148 (175)
Q Consensus 80 ~~~-~~~~~~l~~~l~~~~~p~lliLDEP~~~-~~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~ 148 (175)
.+. +..+ ++..+....+++++++|||... ...++....+.+++.+.+. +.++ +++||+.+...
T Consensus 93 tF~~e~~~--~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~----i~~TH~~~l~~ 158 (222)
T cd03287 93 TFMVELSE--TSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLV----LFVTHYPSLGE 158 (222)
T ss_pred hHHHHHHH--HHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeE----EEEcccHHHHH
Confidence 111 1111 1222222238999999999333 2223333345577777665 7889 99999988653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.1e-13 Score=106.97 Aligned_cols=73 Identities=11% Similarity=-0.129 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhcc--CCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccc
Q 030566 83 DNLDDWLAEELDNY--LDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 83 ~~~~~~l~~~l~~~--~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
++++..+++++... .+|+++++|||...........+.+.++++.+ +.|+ +++||++. +..++++++.+..+
T Consensus 175 ~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~ti----i~isH~~~-~~~~~d~~~~l~~~ 248 (276)
T cd03241 175 ELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQV----LCITHLPQ-VAAMADNHFLVEKE 248 (276)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEE----EEEechHH-HHHhcCcEEEEEEe
Confidence 67777777754322 28999999999666666666777778888754 6788 99999988 45799998888876
Q ss_pred h
Q 030566 161 H 161 (175)
Q Consensus 161 ~ 161 (175)
.
T Consensus 249 ~ 249 (276)
T cd03241 249 V 249 (276)
T ss_pred c
Confidence 3
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-12 Score=107.49 Aligned_cols=152 Identities=15% Similarity=0.147 Sum_probs=97.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccc-eeEEeecCcccccCCCCccCCcchhcc------------HHHHHHHhCCC
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENFDYPVAMDIRELIS------------LEDVMEELGLG 69 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G-~I~i~g~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~ 69 (175)
|++..+|.||-||||+++.++|.++|++| +|-..+.....+.+.-.+.-+++..+. ..++++-+...
T Consensus 368 eiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie 447 (592)
T KOG0063|consen 368 EIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIE 447 (592)
T ss_pred eeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHH
Confidence 68999999999999999999999999876 344333332222222111112332221 12333333221
Q ss_pred CCCchhhhHHHH--HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH-HhCCCcEEEEEeeeccchhh
Q 030566 70 PNGGLIYCMEHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL-KSRNFNVCAVYLLDSQVCIR 146 (175)
Q Consensus 70 ~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l-~~~g~tvli~~l~~sH~~~~ 146 (175)
.-. ......+ .+.||.+++..+-. .+++++.|||+...+...+-.....++++ -..++|- .++-|++.-
T Consensus 448 ~i~--dqevq~lSggelQRval~KOGGK--pAdvYliDEpsAylDSeQRi~AskvikRfilhakkta----fvVEhdfIm 519 (592)
T KOG0063|consen 448 NII--DQEVQGLSGGELQRVALALCLGK--PADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTA----FVVEHDFIM 519 (592)
T ss_pred HHH--hHHhhcCCchhhHHHHHHHhcCC--CCceEEecCchhhcChHHHHHHHHHHHHHHHhccchh----hhhhhHHHH
Confidence 111 1111222 37788888888888 99999999996554444444445566664 3456788 899999999
Q ss_pred hhcCCCceeEeccchh
Q 030566 147 FRTLPPCIVCFCCTHT 162 (175)
Q Consensus 147 ~~~~~~~~~~~~~~~~ 162 (175)
+-..+|++++..+.+-
T Consensus 520 aTYladrvivf~G~ps 535 (592)
T KOG0063|consen 520 ATYLADRVIVFEGQPS 535 (592)
T ss_pred HHhhcceeEEEecCcc
Confidence 9999999999887654
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.2e-12 Score=115.35 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=68.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcc-Cccccc-eeEEeecCcccccCCCCccCCcchhccH-HHHHHHhCCCCCCchhhhHH
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRH-CETVRR-TMHIVNLDPAAENFDYPVAMDIRELISL-EDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl-~~~~~G-~I~i~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 79 (175)
++++|.||||+|||||+|.++|. +.+..| .|..... ..+.+.. +....+.. .++.+ ...
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~----~~~~~~d--~i~~~i~~~~si~~------------~LS 384 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEH----SEIPYFE--EIFADIGDEQSIEQ------------NLS 384 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCcc----ccccchh--heeeecChHhHHhh------------hhh
Confidence 68999999999999999999998 556666 2221100 0111111 11111110 11111 112
Q ss_pred HHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHH-HHHHHHHHhCCCcEEEEEeeeccchhhh
Q 030566 80 HLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVL-RNFVDHLKSRNFNVCAVYLLDSQVCIRF 147 (175)
Q Consensus 80 ~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~-~~~l~~l~~~g~tvli~~l~~sH~~~~~ 147 (175)
.++ +++...+.+.+ . +|+++++|||+..........+ ..+++.+++.|.++ +++||+.+..
T Consensus 385 tfS~~m~~~~~il~~~-~--~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~v----iitTH~~eL~ 448 (771)
T TIGR01069 385 TFSGHMKNISAILSKT-T--ENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQV----LITTHYKELK 448 (771)
T ss_pred HHHHHHHHHHHHHHhc-C--CCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEE----EEECChHHHH
Confidence 223 22222223222 4 8999999999444333333333 56788887788889 9999997753
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.2e-12 Score=98.36 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=30.3
Q ss_pred CCeEEEEECCCCCcHHHH-HHHHHccCccccceeEEee
Q 030566 1 MGYAQLVIGPAGSGKSTY-CSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTL-lk~i~gl~~~~~G~I~i~g 37 (175)
+|+++.|.|+|||||||| ++.+++..++....+++..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 489999999999999999 6899988776555566553
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-11 Score=105.64 Aligned_cols=132 Identities=17% Similarity=0.138 Sum_probs=78.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCcc------CCcchhcc-----------------
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVA------MDIRELIS----------------- 58 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~------~~~~~~~~----------------- 58 (175)
|--+-|+||||||||+|+|+|.|+.|...|...+- +...+.|.|. -+.++++-
T Consensus 508 G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P----~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~d 583 (728)
T KOG0064|consen 508 GMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP----RPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQD 583 (728)
T ss_pred CceEEEECCCCccHHHHHHHHhccCcccCCeeecC----CCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHH
Confidence 66678999999999999999999999988877642 1111222110 01122211
Q ss_pred HHHHHHHhC----------CCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh
Q 030566 59 LEDVMEELG----------LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS 128 (175)
Q Consensus 59 ~~~~~~~~~----------l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~ 128 (175)
...++..+. ++.-..|.. .-+..++||..+||.+.+ +|++.+|||-+...-.+ .-..+.+..+.
T Consensus 584 L~~iL~~v~L~~i~qr~~g~da~~dWkd-~LsgGekQR~~mARm~yH--rPkyalLDEcTsAvsid---vE~~i~~~ak~ 657 (728)
T KOG0064|consen 584 LEAILDIVHLEHILQREGGWDAVRDWKD-VLSGGEKQRMGMARMFYH--RPKYALLDECTSAVSID---VEGKIFQAAKD 657 (728)
T ss_pred HHHHHHHhhHHHHHHhccChhhhccHHh-hccchHHHHHHHHHHHhc--Ccchhhhhhhhcccccc---hHHHHHHHHHh
Confidence 122222222 111111211 112338899999999999 99999999992221111 11223334455
Q ss_pred CCCcEEEEEeeeccchhhh
Q 030566 129 RNFNVCAVYLLDSQVCIRF 147 (175)
Q Consensus 129 ~g~tvli~~l~~sH~~~~~ 147 (175)
.|.+. +-+||+....
T Consensus 658 ~gi~l----lsithrpslw 672 (728)
T KOG0064|consen 658 AGISL----LSITHRPSLW 672 (728)
T ss_pred cCceE----EEeecCccHH
Confidence 68888 8899987654
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.27 E-value=4e-12 Score=103.80 Aligned_cols=125 Identities=15% Similarity=0.124 Sum_probs=76.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHHH
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (175)
|+.+++.||+|||||||++++++++++..|.+.+.+ +.+-.... + +....+. ...... . .
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~-~--~~~~l~~----------~~~~~~-~--~-- 203 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPH-P--NYVHLFY----------SKGGQG-L--A-- 203 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCC-C--CEEEEEe----------cCCCCC-c--C--
Confidence 778999999999999999999999999888777742 21111110 0 0000000 000000 0 0
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccc
Q 030566 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 82 ~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
.......+..++.. +|+++++|||...+.+. +++.+...+.++ +.++|... +...++|+..+..+
T Consensus 204 ~~~~~~~l~~~Lr~--~pd~ii~gE~r~~e~~~-------~l~a~~~g~~~~----i~T~Ha~~-~~~~~~Rl~~l~~~ 268 (308)
T TIGR02788 204 KVTPKDLLQSCLRM--RPDRIILGELRGDEAFD-------FIRAVNTGHPGS----ITTLHAGS-PEEAFEQLALMVKS 268 (308)
T ss_pred ccCHHHHHHHHhcC--CCCeEEEeccCCHHHHH-------HHHHHhcCCCeE----EEEEeCCC-HHHHHHHHHHHhhc
Confidence 01122345667777 99999999994444444 777776433456 66777766 66667887777553
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.5e-11 Score=102.34 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=85.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccccc------C---------CCCccCC------cchhccH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAEN------F---------DYPVAMD------IRELISL 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~------~---------~~~~~~~------~~~~~~~ 59 (175)
+|++++|+|+||+|||||+++|+|+.+++.|.|.+.|....+-. . .+....+ ....+..
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~~~a 236 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTA 236 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHHHHH
Confidence 59999999999999999999999999999999998776532100 0 0000000 0000001
Q ss_pred HHHHHHhC-CCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCC--CcccccccchHHHHHHHHHHh--CCC-cE
Q 030566 60 EDVMEELG-LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCP--GQIELFTHVPVLRNFVDHLKS--RNF-NV 133 (175)
Q Consensus 60 ~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP--~~~~~~~~~~~~~~~l~~l~~--~g~-tv 133 (175)
.++.|.+. .+.+. ..-.+++....+.. |.+. +.+.|| ...........+.++++++.. +|. |.
T Consensus 237 ~~iAEyfr~~g~~V--ll~~Dsltr~A~A~--rEis-------l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~ 305 (438)
T PRK07721 237 TAIAEYFRDQGLNV--MLMMDSVTRVAMAQ--REIG-------LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITA 305 (438)
T ss_pred HHHHHHHHHCCCcE--EEEEeChHHHHHHH--HHHH-------HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeee
Confidence 12222221 01000 00001111000000 0000 012365 333333344456668888763 563 55
Q ss_pred EEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 134 CAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 134 li~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
+.++++++|++++ .+++++..+..++.+..++.
T Consensus 306 ~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~l 338 (438)
T PRK07721 306 FYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQL 338 (438)
T ss_pred EEEEEEECCCCCc--hhhhhEEEecCEEEEEeccH
Confidence 5555999999995 89999999999988877653
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-11 Score=103.67 Aligned_cols=148 Identities=11% Similarity=0.102 Sum_probs=91.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC----c--ccccCCCCccCCcchhc-----------------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD----P--AAENFDYPVAMDIRELI----------------- 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~----~--~~~~~~~~~~~~~~~~~----------------- 57 (175)
.|+-+-|.||||||||+|+|.++|+.+..+|.+..-... . -.+...+... +.++++
T Consensus 460 ~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~ 538 (659)
T KOG0060|consen 460 SGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDE 538 (659)
T ss_pred CCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCcccc-chhheeeccCccccccccCCCHH
Confidence 378899999999999999999999999999998863321 0 0011110000 122211
Q ss_pred cHHHHHHHhCCCCC----------CchhhhHH--HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHH
Q 030566 58 SLEDVMEELGLGPN----------GGLIYCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 58 ~~~~~~~~~~l~~~----------~~~~~~~~--~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
.....++++.++.- ..+.+ .+ +..++||.++||-+.+ +|++-+|||-+.....+ .-..+-+.
T Consensus 539 ~i~r~Le~v~L~hl~~r~ggld~~~~~dW-~dvLS~GEqQRLa~ARLfy~--kPk~AiLDE~TSAv~~d---vE~~~Yr~ 612 (659)
T KOG0060|consen 539 DILRILENVQLGHLLEREGGLDQQVDWDW-MDVLSPGEQQRLAFARLFYH--KPKFAILDECTSAVTED---VEGALYRK 612 (659)
T ss_pred HHHHHHHHhhhhhHHHHhCCCCchhhccH-HhhcCHHHHHHHHHHHHHhc--CCceEEeechhhhccHH---HHHHHHHH
Confidence 12344555544321 11111 22 3348999999999999 99999999992221111 11123455
Q ss_pred HHhCCCcEEEEEeeeccchhhhhcCCCceeEeccc
Q 030566 126 LKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 126 l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
+++.|.|. +=++|+-. ..++=+-+.-++++
T Consensus 613 ~r~~giT~----iSVgHRkS-L~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 613 CREMGITF----ISVGHRKS-LWKFHDYVLRMDGR 642 (659)
T ss_pred HHHcCCeE----EEeccHHH-HHhhhhEEEEecCC
Confidence 67789999 88999865 44666666666663
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.6e-12 Score=93.36 Aligned_cols=145 Identities=14% Similarity=0.132 Sum_probs=71.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccc-cCCCCccCCcchhcc-HHHHHHHhCC-CCCC-chhhhHH
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-NFDYPVAMDIRELIS-LEDVMEELGL-GPNG-GLIYCME 79 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~l-~~~~-~~~~~~~ 79 (175)
.++|+|+||||||||++.+++.+.+ .| +...|.-.+.. ...-...+...+... ....+...++ .... .......
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 79 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EG-YKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVNL 79 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC-CeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEeh
Confidence 4789999999999999999887665 45 33333211100 000000001111100 0001111122 1111 0000001
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEecc
Q 030566 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
+..++....+.+.... +|+++++|||+..+... ..+.+.+.++.+.+.++ ++++|+ ..+..+++++..+..
T Consensus 80 sgle~~~~~l~~~~l~--~~~~lllDE~~~~e~~~--~~~~~~l~~~~~~~~~~----i~v~h~-~~~~~~~~~i~~~~~ 150 (174)
T PRK13695 80 EDLERIGIPALERALE--EADVIIIDEIGKMELKS--PKFVKAVEEVLDSEKPV----IATLHR-RSVHPFVQEIKSRPG 150 (174)
T ss_pred HHHHHHHHHHHHhccC--CCCEEEEECCCcchhhh--HHHHHHHHHHHhCCCeE----EEEECc-hhhHHHHHHHhccCC
Confidence 1113333344444556 89999999973322222 23445677766778899 899997 445556665444433
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-10 Score=87.07 Aligned_cols=150 Identities=11% Similarity=0.082 Sum_probs=78.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccc--cce------eEEeecCcc-------cccCCCCccCCcchhccHHHHHHHhC
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETV--RRT------MHIVNLDPA-------AENFDYPVAMDIRELISLEDVMEELG 67 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~--~G~------I~i~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (175)
-|+.|+|.||+|||||+.+|+-....+ .|. +...+-... .......+.+...+.+..-+.++++.
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~as~~De~~ 117 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVASYLDEAD 117 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhHHHHHHHHHHhhh
Confidence 378999999999999999997655422 222 211111100 00000001112333333444444443
Q ss_pred CCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchh
Q 030566 68 LGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCI 145 (175)
Q Consensus 68 l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~ 145 (175)
-.... ........| +-.-....+.+. ..-+++||||....-...+-.+...|+++.+.|.-+ +|+||..-
T Consensus 118 ~e~~~-~~~sLh~~SHGEsf~~i~~~rf~---~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~----IiATHSPi 189 (233)
T COG3910 118 GEANY-GGRSLHHMSHGESFLAIFHNRFN---GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQI----IIATHSPI 189 (233)
T ss_pred hhccc-CCcchhhhccchHHHHHHHHHhc---cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeE----EEEecChh
Confidence 21110 111112222 333223333332 788999999933332333444556888998889888 99999877
Q ss_pred hhhcCCCceeEeccc
Q 030566 146 RFRTLPPCIVCFCCT 160 (175)
Q Consensus 146 ~~~~~~~~~~~~~~~ 160 (175)
.+.---.+|+-++.+
T Consensus 190 LlAiP~A~I~~~~~~ 204 (233)
T COG3910 190 LLAIPGAEIYEISES 204 (233)
T ss_pred heeCCCcEEEEEecC
Confidence 665444455555444
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=90.92 Aligned_cols=50 Identities=10% Similarity=0.137 Sum_probs=35.6
Q ss_pred CCCEEEEeCCCcc-cccccchHHHHHHHHHHhC-CCcEEEEEeeeccchhhhhcCC
Q 030566 98 DDDYLVFDCPGQI-ELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLP 151 (175)
Q Consensus 98 ~p~lliLDEP~~~-~~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~ 151 (175)
+|+++++|||++. ...++....+.+++.+.+. +.++ +++||+.+.+..+.
T Consensus 109 ~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~----i~~TH~~el~~~~~ 160 (218)
T cd03286 109 PDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLT----LFSTHYHSLCDEFH 160 (218)
T ss_pred CCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcE----EEEeccHHHHHHhh
Confidence 8999999999433 2222333334457777665 8889 99999999887765
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=99.19 E-value=6e-11 Score=91.05 Aligned_cols=121 Identities=18% Similarity=0.160 Sum_probs=72.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccc-cceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHHHH
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~-~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (175)
++.|.||+||||||+++.+++.+.+. .|.|.....++.. ... .....+. ....+...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~-----~~~-~~~~~i~------q~~vg~~~---------- 60 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEF-----VHE-SKRSLIN------QREVGLDT---------- 60 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccc-----ccc-Cccceee------ecccCCCc----------
Confidence 68999999999999999999888743 5676665544311 100 0000000 00111100
Q ss_pred HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccc
Q 030566 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 83 ~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
......+++++.. +|+++++|||...+. +...+ +....|..+ +.++|..... ..++|+..+...
T Consensus 61 ~~~~~~i~~aLr~--~pd~ii~gEird~e~------~~~~l-~~a~~G~~v----~~t~Ha~~~~-~~~~Rl~~l~~~ 124 (198)
T cd01131 61 LSFENALKAALRQ--DPDVILVGEMRDLET------IRLAL-TAAETGHLV----MSTLHTNSAA-KTIDRIIDVFPA 124 (198)
T ss_pred cCHHHHHHHHhcC--CcCEEEEcCCCCHHH------HHHHH-HHHHcCCEE----EEEecCCcHH-HHHhHHHhhcCc
Confidence 1122356778888 999999999932221 22234 445678888 8889987644 567877766543
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-10 Score=109.77 Aligned_cols=93 Identities=13% Similarity=0.006 Sum_probs=64.1
Q ss_pred HHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhcc-CCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEE
Q 030566 61 DVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNY-LDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (175)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~-~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~ 137 (175)
+.+..++++.-. ...+...+| +.||.-|+..+..- ..+.+++||||+...-....+.+.++++++.+.|.||
T Consensus 1681 ~~L~~vGLgYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tv---- 1755 (1809)
T PRK00635 1681 QALIDNGLGYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSV---- 1755 (1809)
T ss_pred HHHHHcCCCeee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeE----
Confidence 445555555322 111223333 88888999888750 1368999999955554555567777888999999999
Q ss_pred eeeccchhhhhcCCCceeEecc
Q 030566 138 LLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 138 l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
+++.|+++.+.. +|.++=|.+
T Consensus 1756 ivieH~~~~i~~-aD~iidlgp 1776 (1809)
T PRK00635 1756 IYIDHDPALLKQ-ADYLIEMGP 1776 (1809)
T ss_pred EEEeCCHHHHHh-CCEEEEcCC
Confidence 999999887755 886666554
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.17 E-value=8e-11 Score=85.86 Aligned_cols=132 Identities=19% Similarity=0.138 Sum_probs=68.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHHHHH
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 83 (175)
++.|.|+||+||||+++.+++...+..|.+.+...+......... ...+......+...+..... .......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 72 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTER-----LIGESLKGALDNLIIVFATA---DDPAAAR 72 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHH-----HhhhhhccccccEEEEEcCC---CCCcHHH
Confidence 478999999999999999999988777888776554221110000 00000000001100000000 0011112
Q ss_pred HHHHHHHHHhhccCCCCEEEEeCCCcccc----------cccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhc
Q 030566 84 NLDDWLAEELDNYLDDDYLVFDCPGQIEL----------FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRT 149 (175)
Q Consensus 84 ~~~~~l~~~l~~~~~p~lliLDEP~~~~~----------~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~ 149 (175)
..+...+..... +|+++++|||..... ......+..+....++.+.|+ ++++|.......
T Consensus 73 ~~~~~~~~~~~~--~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v----v~~~~~~~~~~~ 142 (165)
T cd01120 73 LLSKAERLRERG--GDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTV----IFTLQVPSGDKG 142 (165)
T ss_pred HHHHHHHHHhCC--CCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceE----EEEEecCCcccc
Confidence 222334445566 999999999932110 011233444444555568899 888887755543
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.3e-11 Score=98.33 Aligned_cols=156 Identities=15% Similarity=0.046 Sum_probs=95.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc------------c-------cccCCCCccCCcchhcc---
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP------------A-------AENFDYPVAMDIRELIS--- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~------------~-------~~~~~~~~~~~~~~~~~--- 58 (175)
.|++.|++|.||-||||-+++++|-.+|.-|.--- +-+. + ..+.......+.-+.++
T Consensus 99 pg~vlglvgtngigkstAlkilagk~kpnlg~~~~-pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 99 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDN-PPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred cchhccccccCcccHHHHHHHHhCCCCCCCCCCCC-CcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 38999999999999999999999999987664321 0000 0 00000000000001110
Q ss_pred ----------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030566 59 ----------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 ----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..++++.+.+..-..+.....+.++.|+.++|.+..+ .+++.++|||+...+.+.+-.....
T Consensus 178 k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq--~advyMFDEpSsYLDVKQRLkaA~~ 255 (592)
T KOG0063|consen 178 KGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQ--KADVYMFDEPSSYLDVKQRLKAAIT 255 (592)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhh--hcceeEecCCcccchHHHhhhHHHH
Confidence 1233343333322222222223346787888888888 9999999999655555544444556
Q ss_pred HHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 123 VDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
++.+..-..-| +++-|++.....+.|-+-++++-...
T Consensus 256 IRsl~~p~~Yi----IVVEHDLsVLDylSDFiCcLYGvp~a 292 (592)
T KOG0063|consen 256 IRSLINPDRYI----IVVEHDLSVLDYLSDFICCLYGVPSA 292 (592)
T ss_pred HHHhhCCCCeE----EEEEeechHHHhhhcceeEEecCCcc
Confidence 77776666778 88999999888888877777665543
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-09 Score=84.36 Aligned_cols=57 Identities=12% Similarity=0.139 Sum_probs=36.4
Q ss_pred HhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCce
Q 030566 92 ELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCI 154 (175)
Q Consensus 92 ~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~ 154 (175)
++..+...|+++||||....+..++..+..+|+++.+ +.=+ +++||+-..+ ..++..
T Consensus 152 A~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~----ii~Th~~~~~-~~a~~~ 208 (220)
T PF02463_consen 152 ALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQF----IITTHNPEMF-EDADKL 208 (220)
T ss_dssp HHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEE----EEE-S-HHHH-TT-SEE
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccc----cccccccccc-cccccc
Confidence 4444558899999999666667777788888888753 3567 8899996544 555543
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-10 Score=105.89 Aligned_cols=130 Identities=12% Similarity=0.076 Sum_probs=70.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC-ccccceeEEeecCcccc--cCCCCccCCcchhccHHHHHHHhCCCCCCchhhhH
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC-ETVRRTMHIVNLDPAAE--NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCM 78 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~-~~~~G~I~i~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (175)
+.++.|.|||++||||++|.++... -+..|-- -+... .+.+.. +.. - .++.........
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~-----vpa~~~~~i~~~~--~i~---------~--~ig~~~si~~~l 388 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLP-----IPANEPSEIPVFK--EIF---------A--DIGDEQSIEQSL 388 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCC-----cccCCCccccccc--eEE---------E--ecCCccchhhch
Confidence 3578999999999999999996431 1222210 01100 111111 000 0 111111111111
Q ss_pred HHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccc-cchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCcee
Q 030566 79 EHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIV 155 (175)
Q Consensus 79 ~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~-~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~ 155 (175)
..++ +++...+.+.+ . +|+++++|||+...... +......+++.+.+.|.++ +++||+.+......++..
T Consensus 389 StfS~~m~~~~~Il~~~-~--~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~v----IitTH~~el~~~~~~~~~ 461 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-D--KNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKI----IATTHYKELKALMYNREG 461 (782)
T ss_pred hHHHHHHHHHHHHHHhC-C--cCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEE----EEECChHHHHHHHhcCCC
Confidence 2233 44444444444 5 89999999994443333 3333345677777778888 999999887766555443
Q ss_pred E
Q 030566 156 C 156 (175)
Q Consensus 156 ~ 156 (175)
+
T Consensus 462 v 462 (782)
T PRK00409 462 V 462 (782)
T ss_pred e
Confidence 3
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.4e-10 Score=89.90 Aligned_cols=139 Identities=35% Similarity=0.598 Sum_probs=107.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHHHHH
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 83 (175)
++.++|.-||||||++.-|.+.+....--.++-+.||.-.++.|...++.++.+...+++++++++++.........+.-
T Consensus 21 ~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF~t 100 (366)
T KOG1532|consen 21 IILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLFAT 100 (366)
T ss_pred EEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHHHHH
Confidence 78899999999999999999988766555888888888778888888899999999999999999999876665555554
Q ss_pred HHHHH--HHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchh
Q 030566 84 NLDDW--LAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCI 145 (175)
Q Consensus 84 ~~~~~--l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~ 145 (175)
+.... +...... +-+..++|-|++.+++++...-.-+...++...-|| +++++.|-+-.
T Consensus 101 k~dqv~~~iek~~~--~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptv-v~YvvDt~rs~ 161 (366)
T KOG1532|consen 101 KFDQVIELIEKRAE--EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTV-VVYVVDTPRST 161 (366)
T ss_pred HHHHHHHHHHHhhc--ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeE-EEEEecCCcCC
Confidence 44322 2223334 567999999999999987776555677787777776 55577665433
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.6e-10 Score=84.79 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=34.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
+|+.++|+||||||||||+++|+|+++|+.|.+.+.+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIED 60 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence 4889999999999999999999999999999998854
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.7e-10 Score=88.05 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhccCCCCEEEEeCCC-----cccccccchHHHHHHHHHH
Q 030566 83 DNLDDWLAEELDNYLDDDYLVFDCPG-----QIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 83 ~~~~~~l~~~l~~~~~p~lliLDEP~-----~~~~~~~~~~~~~~l~~l~ 127 (175)
+++..++++.+.. +|+++++|||+ ..........+.+++++++
T Consensus 157 ~~~f~~ia~~l~~--~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 157 EKPFLWLARRLTN--DPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHhh--cccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3455788999999 99999999996 5555555556666777664
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.2e-09 Score=83.83 Aligned_cols=138 Identities=38% Similarity=0.659 Sum_probs=90.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (175)
|..++.+.|+.||||||++..++..+....-.+.+-+.++......+.+..+..+.+...+++...++++........+.
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~ 80 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDL 80 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHH
Confidence 34578999999999999999999877653334777667776655566666677777778888888777666533332222
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeec
Q 030566 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~s 141 (175)
..... .++...+.. .+++++++|=|++......+.....+++.+.... +-+++++++.
T Consensus 81 ~~~~~-~~l~~~l~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~-~~~ii~liD~ 138 (253)
T PRK13768 81 LLTKA-DEIKEEIES-LDADYVLVDTPGQMELFAFRESGRKLVERLSGSS-KSVVVFLIDA 138 (253)
T ss_pred HHHHH-HHHHHHHHh-cCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcC-CeEEEEEech
Confidence 22333 333333332 2679999999987776665555555666665433 3444556655
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-10 Score=92.90 Aligned_cols=72 Identities=13% Similarity=-0.042 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhhc-------cCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCC---
Q 030566 82 EDNLDDWLAEELDN-------YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLP--- 151 (175)
Q Consensus 82 ~~~~~~~l~~~l~~-------~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~--- 151 (175)
.++++..++++++. ..+|+++++|||....+....+.+.+.++++ + .+ ++++|+..++..++
T Consensus 187 Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~-q~----ii~~~~~~~~~~~~~~~ 258 (270)
T cd03242 187 GQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---V-QT----FVTTTDLADFDALWLRR 258 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---C-CE----EEEeCCchhccchhccC
Confidence 36666777776641 2399999999995555455444444445432 3 45 77777778888877
Q ss_pred CceeEeccch
Q 030566 152 PCIVCFCCTH 161 (175)
Q Consensus 152 ~~~~~~~~~~ 161 (175)
++++.++.|+
T Consensus 259 ~~i~~l~~g~ 268 (270)
T cd03242 259 AQIFRVDAGT 268 (270)
T ss_pred ccEEEEeCcE
Confidence 5677776654
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-09 Score=96.04 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhhc-cCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCcee
Q 030566 83 DNLDDWLAEELDN-YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIV 155 (175)
Q Consensus 83 ~~~~~~l~~~l~~-~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~ 155 (175)
+.||.-||..|.. -...-++|||||+...=+.....+.++|.++..+|.|| +++-|+++.+ +-+|-++
T Consensus 827 EaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTV----iVIEHNLdVI-k~AD~II 895 (935)
T COG0178 827 EAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTV----IVIEHNLDVI-KTADWII 895 (935)
T ss_pred HHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEE----EEEecccceE-eecCEEE
Confidence 7788888888776 12347999999944433444446777888888999999 9999998855 6667443
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.3e-10 Score=84.16 Aligned_cols=59 Identities=19% Similarity=0.112 Sum_probs=43.4
Q ss_pred CCCEEEEeCCCcccc---cccchHHHHHHHHHHhCCCcEEEEEeeeccchhh---------hhcCCCceeEeccc
Q 030566 98 DDDYLVFDCPGQIEL---FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIR---------FRTLPPCIVCFCCT 160 (175)
Q Consensus 98 ~p~lliLDEP~~~~~---~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~---------~~~~~~~~~~~~~~ 160 (175)
+|+++++|||+.... ......+..+++.+++.|.|+ ++++|.... +..++|.++.+...
T Consensus 95 ~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tv----i~v~~~~~~~~~~~~~~~~~~~aD~ii~l~~~ 165 (187)
T cd01124 95 KAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTT----LLTSEQSGLEGTGFGGGDVEYLVDGVIRLRLD 165 (187)
T ss_pred CCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEE----EEEeccccCCCcccCcCceeEeeeEEEEEEEE
Confidence 899999999933322 223345566777888789999 888998765 67888888888744
|
A related protein is found in archaea. |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.8e-10 Score=95.52 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=34.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccc-eeEEeecCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G-~I~i~g~~~ 40 (175)
+||+++|+||||||||||++ +|+.+|++| +|.++|.+.
T Consensus 31 ~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~ 69 (504)
T TIGR03238 31 SSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHS 69 (504)
T ss_pred CCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEEC
Confidence 59999999999999999999 788888888 799999765
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.2e-10 Score=76.60 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=31.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
+|++++|+||||||||||++++. +|++.+.|.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di 47 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI------KRKHRLVGDDN 47 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeH
Confidence 38999999999999999999986 88999999875
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-09 Score=99.76 Aligned_cols=99 Identities=14% Similarity=0.004 Sum_probs=74.9
Q ss_pred HHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCC--CEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEe
Q 030566 62 VMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDD--DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (175)
Q Consensus 62 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p--~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l 138 (175)
.++.++++.. .......-+..++|+..|++++.. +| ++++||||+........+.+.++|++++++|.|| +
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~--~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TV----I 545 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGS--GLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTL----I 545 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhh--CCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEE----E
Confidence 4455555422 222222223348999999999998 76 9999999977776777788889999998889999 9
Q ss_pred eeccchhhhhcCCCceeEe------ccchhhHHhh
Q 030566 139 LDSQVCIRFRTLPPCIVCF------CCTHTVVQRA 167 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~------~~~~~~~~~~ 167 (175)
+++|+++++. .+|+++.| ..|..+.+++
T Consensus 546 vVeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~ 579 (943)
T PRK00349 546 VVEHDEDTIR-AADYIVDIGPGAGVHGGEVVASGT 579 (943)
T ss_pred EEeCCHHHHH-hCCEEEEeccccCCCCCEEeeccC
Confidence 9999999986 69999999 6666665544
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-09 Score=100.88 Aligned_cols=163 Identities=16% Similarity=0.116 Sum_probs=102.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc---ccceeEEeecCccc----ccCCCC-------ccCCcchhccH-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDPAA----ENFDYP-------VAMDIRELISL------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~---~~G~I~i~g~~~~~----~~~~~~-------~~~~~~~~~~~------- 59 (175)
.|+.+.++||.|||||||+++++|-... ..|+|+++|.+... ....|. +.+++++.+..
T Consensus 140 pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~ 219 (1391)
T KOG0065|consen 140 PGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGP 219 (1391)
T ss_pred CCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCC
Confidence 3899999999999999999999998752 35799999987432 111121 22333333321
Q ss_pred -----------------HHHHHHhCCCCCCchhh-----hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccch
Q 030566 60 -----------------EDVMEELGLGPNGGLIY-----CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVP 117 (175)
Q Consensus 60 -----------------~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~ 117 (175)
+.+++.+++..-..... +.-+..++.|..++..+.. .++++.+||+++..+....-
T Consensus 220 ~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~--~~~~~~~De~t~GLDSsTal 297 (1391)
T KOG0065|consen 220 GSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVG--PASILFWDEITRGLDSSTAF 297 (1391)
T ss_pred ccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeec--CcceeeeecccccccHHHHH
Confidence 12334444432111111 0111225555566666666 99999999996655554444
Q ss_pred HHHHHHHHHHh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 118 VLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 118 ~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
.+.+.++++.. -+.|+++ -+.+-..++-+..|.+.+|..|..++++.+
T Consensus 298 ~iik~lr~~a~~~~~t~~v---si~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~ 346 (1391)
T KOG0065|consen 298 QIIKALRQLAHITGATALV---SILQPSPEIYDLFDDVILLSEGYQIYQGPR 346 (1391)
T ss_pred HHHHHHHHHHhhhcceEEE---EeccCChHHHHhhhheeeeeccceEEeccH
Confidence 55567777754 4667722 234455677788899999999999998764
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-09 Score=98.53 Aligned_cols=81 Identities=14% Similarity=0.023 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhhccCCC--CEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEe
Q 030566 80 HLEDNLDDWLAEELDNYLDD--DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p--~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
+..++||..|++++.. +| +++|||||+........+.+.++|++++++|.|| ++++|+++++. .||+++.|
T Consensus 489 SGGE~QRv~LA~aL~~--~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TV----IvVeHd~~~i~-~aD~vi~L 561 (924)
T TIGR00630 489 SGGEAQRIRLATQIGS--GLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTV----IVVEHDEETIR-AADYVIDI 561 (924)
T ss_pred CHHHHHHHHHHHHHhh--CCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEE----EEEECCHHHHh-hCCEEEEe
Confidence 3448999999999998 75 8999999977766777778888999998889999 99999999886 89999999
Q ss_pred ------ccchhhHHhh
Q 030566 158 ------CCTHTVVQRA 167 (175)
Q Consensus 158 ------~~~~~~~~~~ 167 (175)
..|..+.+++
T Consensus 562 gpgaG~~~G~Iv~~g~ 577 (924)
T TIGR00630 562 GPGAGIHGGEVVASGT 577 (924)
T ss_pred cccccCCCCEEeeccC
Confidence 5666555443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-08 Score=84.31 Aligned_cols=122 Identities=18% Similarity=0.115 Sum_probs=69.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc-cccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHH
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~-~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (175)
+..+.|.||+||||||+++++.+.++ +..+.|.....++... .+ .....+. ....+...
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~--~~~~~i~------q~evg~~~-------- 181 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HR--NKRSLIN------QREVGLDT-------- 181 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----cc--CccceEE------ccccCCCC--------
Confidence 56899999999999999999999766 4467776654432211 00 0000000 00111100
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEecc
Q 030566 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
.-....++.++.. +|+++++||+.-.+... ..++ ....|.+| +.+.|-.. +....+|+.-+..
T Consensus 182 --~~~~~~l~~~lr~--~pd~i~vgEird~~~~~------~~l~-aa~tGh~v----~~T~Ha~~-~~~~~~Rl~~~~~ 244 (343)
T TIGR01420 182 --LSFANALRAALRE--DPDVILIGEMRDLETVE------LALT-AAETGHLV----FGTLHTNS-AAQTIERIIDVFP 244 (343)
T ss_pred --cCHHHHHHHhhcc--CCCEEEEeCCCCHHHHH------HHHH-HHHcCCcE----EEEEcCCC-HHHHHHHHHHhcc
Confidence 1122455667888 99999999993222121 1333 45678888 77777643 3344566654444
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=71.95 Aligned_cols=30 Identities=37% Similarity=0.559 Sum_probs=26.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcccc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVR 30 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~ 30 (175)
+|..+.|.||+|+||||+++.++..+....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 367899999999999999999999987654
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.1e-08 Score=78.62 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=27.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH-ccCccccceeEEeec
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVNL 38 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~-gl~~~~~G~I~i~g~ 38 (175)
+|.++.|.|++|||||||...++ +..+ ..+.+.+...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~ 61 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITT 61 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEc
Confidence 48899999999999999999874 3333 3445555443
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.7e-08 Score=81.72 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=36.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
+|++++++|||||||||++..|++.+.+..++|.+.+.|.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 3789999999999999999999999998888999988775
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.4e-09 Score=78.52 Aligned_cols=35 Identities=29% Similarity=0.520 Sum_probs=29.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeec
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~ 38 (175)
||++++|+||||||||||++.|++...+ .+.+.+.
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~ 35 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHR 35 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCE
Confidence 7999999999999999999999999865 3555443
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-08 Score=76.82 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=31.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
.|++++++|+|||||||++++|++++.+ +.++|.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~ 37 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDL 37 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCccc
Confidence 4999999999999999999999999887 57777653
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.9e-09 Score=81.26 Aligned_cols=33 Identities=24% Similarity=0.187 Sum_probs=30.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeE
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH 34 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~ 34 (175)
..++||.||||||||||+++|++++++++|.+.
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~ 65 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELPA 65 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhccCCce
Confidence 468999999999999999999999999999843
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-08 Score=86.24 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=35.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~ 39 (175)
+|+.++|+|+||+|||||+++|++..+++.|.|.+.|..
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGer 193 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGER 193 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCC
Confidence 589999999999999999999999999999988776654
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.7e-09 Score=79.16 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=26.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+|++++|+||||||||||++.|++++++
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4899999999999999999999999875
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-07 Score=75.23 Aligned_cols=68 Identities=9% Similarity=-0.016 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhccCCCCEEEEeCCCcccc-cccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchh
Q 030566 84 NLDDWLAEELDNYLDDDYLVFDCPGQIEL-FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHT 162 (175)
Q Consensus 84 ~~~~~l~~~l~~~~~p~lliLDEP~~~~~-~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~ 162 (175)
+++...++.+.+ ++++.+| |+.... -+..+-. ++.+++..+.|. ++.||.+..... .+.|.++.++..
T Consensus 143 ~q~~~~Ar~~~~--~gsIt~l--~T~~~d~~~~~~~~--i~~~~~~~~~~~----ivls~~la~~~~-~paI~vl~s~sr 211 (249)
T cd01128 143 KRFFGAARNIEE--GGSLTII--ATALVDTGSRMDDV--IFEEFKGTGNME----LVLDRRLAERRI-FPAIDILKSGTR 211 (249)
T ss_pred HHHHHHhcCCCC--CCceEEe--eeheecCCCcccch--HHHHHhcCCCcE----EEEchHHhhCCC-CCeEEEcCCCCc
Confidence 555666777777 9999999 732222 1222211 255665567889 999999998854 477888877764
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.7e-09 Score=83.17 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=32.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCc--cccceeEEeecC
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLD 39 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~--~~~G~I~i~g~~ 39 (175)
.++||.|+||||||||+++|.+++. |.+|+|.+.+.|
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D 101 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTD 101 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecc
Confidence 4899999999999999999999997 778888775543
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-08 Score=78.39 Aligned_cols=27 Identities=33% Similarity=0.539 Sum_probs=25.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+|++++|+||+|||||||+++|++..+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 499999999999999999999999975
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.8e-08 Score=75.67 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=0.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.+|+|+|||||||++++|..+.
T Consensus 1 i~viiG~N~sGKS~il~ai~~~~ 23 (303)
T PF13304_consen 1 INVIIGPNGSGKSNILEAIYFLF 23 (303)
T ss_dssp -----------------------
T ss_pred CCccccccccccccccccccccc
Confidence 46899999999999999998774
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.9e-08 Score=87.52 Aligned_cols=51 Identities=10% Similarity=0.238 Sum_probs=36.3
Q ss_pred CCCCEEEEeCCCc-ccccccchHHHHHHHHHHhC-CCcEEEEEeeeccchhhhhcCCC
Q 030566 97 LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPP 152 (175)
Q Consensus 97 ~~p~lliLDEP~~-~~~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~ 152 (175)
.++.++|+|||++ ....++....+.+++.+.+. +.++ +++||+ .++..+++
T Consensus 685 t~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~----l~aTH~-~el~~l~~ 737 (854)
T PRK05399 685 TERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKT----LFATHY-HELTELEE 737 (854)
T ss_pred CCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceE----EEEech-HHHHHHhh
Confidence 3889999999933 22334555667788888766 5778 999999 55555554
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.9e-07 Score=84.24 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=48.3
Q ss_pred CCCCEEEEeCCCccc-ccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhh---------cCCCceeEeccchh
Q 030566 97 LDDDYLVFDCPGQIE-LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFR---------TLPPCIVCFCCTHT 162 (175)
Q Consensus 97 ~~p~lliLDEP~~~~-~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~---------~~~~~~~~~~~~~~ 162 (175)
.+|+++++|||.... .....+.+.+.++.++++|.++ +++||+++++. +.|++.+++.++..
T Consensus 651 ~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~v----il~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a 722 (818)
T PRK13830 651 GAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAV----VLATQSISDAERSGIIDVLKESCPTKICLPNGAA 722 (818)
T ss_pred CCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEE----EEEeCCHHHHhcCchHHHHHhcCCeEEECCCccc
Confidence 399999999992222 2334556777888888889899 99999999986 57888888877664
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.3e-08 Score=83.09 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=35.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~ 39 (175)
+|++++|+|+||+|||||+++|++..+++.|.+...|..
T Consensus 162 ~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r 200 (440)
T TIGR01026 162 KGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGER 200 (440)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeec
Confidence 599999999999999999999999999998877776654
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.1e-08 Score=77.23 Aligned_cols=38 Identities=18% Similarity=0.386 Sum_probs=27.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH-ccCccccceeEEeec
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVNL 38 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~-gl~~~~~G~I~i~g~ 38 (175)
+|+++.|.|++|||||||+..++ ...++..+.+++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 48999999999999999998654 223444445666543
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.7e-08 Score=62.24 Aligned_cols=29 Identities=34% Similarity=0.448 Sum_probs=24.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCcccc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVR 30 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~ 30 (175)
|+++.|.|||||||||++.++.=++-+..
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 57899999999999999999987665543
|
|
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.9e-08 Score=76.76 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=27.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccCcc--ccceeEE
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHI 35 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~--~~G~I~i 35 (175)
++||.|+||||||||++.|++++.+ .++++.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v 34 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL 34 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence 5899999999999999999999875 4566665
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.6e-07 Score=69.06 Aligned_cols=36 Identities=22% Similarity=0.197 Sum_probs=26.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEe
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~ 36 (175)
||.++.+.||.||||||++.-++--.......+.+.
T Consensus 1 ~g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 1 MAKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 689999999999999998866655443333345544
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.9e-08 Score=83.06 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=30.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccce--eEEee
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRT--MHIVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~--I~i~g 37 (175)
+|.+++++|||||||||++..|++.+....|. |.+-.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~ 293 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLT 293 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 37899999999999999999999998777664 54433
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.4e-07 Score=78.60 Aligned_cols=137 Identities=15% Similarity=0.165 Sum_probs=73.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcccccee-EEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTM-HIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I-~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+|+++.|.|++|+|||||+..++.......+.+ ++.+.+...+ + ..-.+.+++...........
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~q-i--------------~~ra~rlg~~~~~l~~~~e~ 157 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQ-I--------------KMRAIRLGLPEPNLYVLSET 157 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHH-H--------------HHHHHHcCCChHHeEEcCCC
Confidence 489999999999999999999987665544554 5555442211 0 00011111111000000000
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCcc---cccc---c---chHHHHHHHHH-HhCCCcEEEEEeeeccchhh---
Q 030566 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQI---ELFT---H---VPVLRNFVDHL-KSRNFNVCAVYLLDSQVCIR--- 146 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~---~~~~---~---~~~~~~~l~~l-~~~g~tvli~~l~~sH~~~~--- 146 (175)
.+ +.. ++..-.. +|+++++|.-... ++.. . ...+...|.++ ++.|.|+ ++++|...+
T Consensus 158 ~~-~~I---~~~i~~~--~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTv----llt~hvtkeg~~ 227 (454)
T TIGR00416 158 NW-EQI---CANIEEE--NPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAI----FIVGHVTKEGSI 227 (454)
T ss_pred CH-HHH---HHHHHhc--CCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEE----EEEeccccCCcc
Confidence 01 111 1111124 8999999987211 1000 0 11122234444 5679999 888887665
Q ss_pred -----hhcCCCceeEeccchh
Q 030566 147 -----FRTLPPCIVCFCCTHT 162 (175)
Q Consensus 147 -----~~~~~~~~~~~~~~~~ 162 (175)
++.++|.+++++....
T Consensus 228 aG~~~le~lvD~VI~Le~~~~ 248 (454)
T TIGR00416 228 AGPKVLEHMVDTVLYFEGDRD 248 (454)
T ss_pred CCcccEeeeceEEEEEeccCC
Confidence 6778899998886543
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.7e-08 Score=72.21 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=28.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
|++++|+||||||||||++.|++.+++. |.+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~ 33 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHF 33 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEE
Confidence 6899999999999999999999987654 55544
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PLN02318 phosphoribulokinase/uridine kinase | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-07 Score=82.66 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=32.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
++||.||||||||||++.|++++ |..|.|.++|+..
T Consensus 67 IIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~ 102 (656)
T PLN02318 67 LVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYND 102 (656)
T ss_pred EEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceec
Confidence 79999999999999999999997 5689999998753
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.4e-07 Score=86.59 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=30.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC-ccccceeEEee
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC-ETVRRTMHIVN 37 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~-~~~~G~I~i~g 37 (175)
++++||+|++|+|||||++++++.+ ...+|.+++++
T Consensus 207 ~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 207 VRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 6799999999999999999996654 45689888865
|
syringae 6; Provisional |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.3e-08 Score=72.99 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=26.8
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccceeEEeec
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~ 38 (175)
++||.||||||||||+++|++++ ..|.+.+.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~ 33 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQ 33 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEe
Confidence 58999999999999999999998 3455555443
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-07 Score=80.87 Aligned_cols=38 Identities=24% Similarity=0.181 Sum_probs=35.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeec
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~ 38 (175)
+|++++|+|+||||||||+++|+++.+|+.|.+.+.|.
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGe 201 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGE 201 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeeccc
Confidence 59999999999999999999999999999998888653
|
|
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-06 Score=79.61 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=36.3
Q ss_pred CCCCEEEEeCCCcc-cccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhc
Q 030566 97 LDDDYLVFDCPGQI-ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRT 149 (175)
Q Consensus 97 ~~p~lliLDEP~~~-~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~ 149 (175)
.+|.++++|||-.. +.....+.+.+.++.+++.|..+ +++||+++++.+
T Consensus 641 g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~----i~~TQ~~~d~~~ 690 (800)
T PRK13898 641 GTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFV----IFATQSVEDASK 690 (800)
T ss_pred CCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEE----EEEeCCHHHHHh
Confidence 38999999999211 11223446677888888888888 999999988765
|
|
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=98.49 E-value=1e-07 Score=78.63 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=32.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccc---cceeEEeecCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDP 40 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~---~G~I~i~g~~~ 40 (175)
++||.|++|||||||++.|.+++++. .|.|.+++...
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 39999999999999999999999874 57888888653
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.5e-07 Score=64.17 Aligned_cols=27 Identities=26% Similarity=0.408 Sum_probs=24.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCcc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+..+.|.||+|+||||+++.++.....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~ 45 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFR 45 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 567899999999999999999998763
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-07 Score=70.74 Aligned_cols=27 Identities=33% Similarity=0.554 Sum_probs=24.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCcc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
|++++|+||||||||||++.|++..+.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcc
Confidence 789999999999999999999998754
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.2e-07 Score=74.79 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=24.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+|..++|+||+||||||+++++++.+.
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999999884
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-07 Score=76.05 Aligned_cols=32 Identities=28% Similarity=0.215 Sum_probs=28.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
++||.|+||||||||++.|++++++..|.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~ 32 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVIC 32 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEE
Confidence 58999999999999999999999987775443
|
This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. |
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-06 Score=77.15 Aligned_cols=120 Identities=15% Similarity=0.137 Sum_probs=72.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHHHH
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (175)
.-+.+.||.||||||++++++..+.. .|.+.+-=.++.+-. +.. .. .++ .... . ...
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~-~~riV~TiEDp~El~--~~~--~i-~q~-----------~~~~---~---~~~ 314 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYAD-MGKIVKTMESPRDLQ--VPP--EI-TQY-----------SKLE---G---SME 314 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhh-CCCEEEEECCCcccc--CCC--cc-eEE-----------eecc---c---cHH
Confidence 45789999999999999999999864 554432111221111 100 00 000 0000 0 001
Q ss_pred HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeecc---------------chhhh
Q 030566 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ---------------VCIRF 147 (175)
Q Consensus 83 ~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH---------------~~~~~ 147 (175)
. +....|.. +|+++++||.-..+.+. ++..++..|..+ +-+.| ++..+
T Consensus 315 ~----~~~~lLR~--rPD~IivGEiRd~Et~~-------~~~~l~~ag~Gv----igTlHA~sa~~Ai~Rl~~~v~lg~i 377 (602)
T PRK13764 315 E----TADILLLV--RPDYTIYDEMRKTEDFK-------IFADMRLAGVGM----VGVVHATRPIDAIQRFIGRVELGMI 377 (602)
T ss_pred H----HHHHHHhh--CCCEEEECCCCCHHHHH-------HHHHHHHcCCeE----EEEECCCCHHHHHHHHHhhhhhchH
Confidence 1 11112556 99999999994444454 666666567666 44556 77778
Q ss_pred hcCCCceeEeccchh
Q 030566 148 RTLPPCIVCFCCTHT 162 (175)
Q Consensus 148 ~~~~~~~~~~~~~~~ 162 (175)
...+|+++++..+..
T Consensus 378 ~~iID~IV~I~~G~I 392 (602)
T PRK13764 378 PQIVDTVIFIEDGEV 392 (602)
T ss_pred HHhhcEEEEEeCCEE
Confidence 888999999988876
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.4e-07 Score=75.32 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=35.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~ 39 (175)
+|++++|+|+||+|||||+++|+|...++.|.+...|.+
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 599999999999999999999999999998888777654
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.9e-06 Score=66.88 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=29.6
Q ss_pred CCCEEEEeCCCcc-cccccchHHHHHHHHHHhC-CCcEEEEEeeeccchhhh
Q 030566 98 DDDYLVFDCPGQI-ELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRF 147 (175)
Q Consensus 98 ~p~lliLDEP~~~-~~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~ 147 (175)
+..++++||+++. ...++......+++.+.++ +..+ +++||..+..
T Consensus 122 ~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~----i~~TH~~~l~ 169 (235)
T PF00488_consen 122 EKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFV----IIATHFHELA 169 (235)
T ss_dssp TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EE----EEEES-GGGG
T ss_pred cceeeecccccCCCChhHHHHHHHHHHHHHHHhccccE----EEEeccchhH
Confidence 6779999999332 2233344455678888764 6666 8999988653
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-06 Score=67.99 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=20.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHH
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLY 23 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~ 23 (175)
|++..|+||.|+|||||+-.++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la 22 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLA 22 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHH
Confidence 7888999999999999998886
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.6e-07 Score=70.40 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=28.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
++.+++|.|+||||||||++.|++.++ .+.+.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~ 39 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIP 39 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEe
Confidence 367999999999999999999999883 34454433
|
|
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.8e-07 Score=70.35 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=29.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHH---ccCccccceeEE
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLY---RHCETVRRTMHI 35 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~---gl~~~~~G~I~i 35 (175)
..+++++|++||||||+++.|+ |+..++.|++..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~ 39 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLR 39 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHH
Confidence 4689999999999999999999 887788877643
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-06 Score=73.15 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+|++++++||||+||||++..|++....
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~ 163 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVM 163 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3889999999999999999999987543
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.2e-07 Score=76.45 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=35.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeec
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~ 38 (175)
+|++++++|+||+|||||++.|+|..++..|+|.+++.
T Consensus 194 ~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~ 231 (356)
T PRK01889 194 GGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDS 231 (356)
T ss_pred cCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCC
Confidence 38899999999999999999999999999999998754
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.3e-06 Score=66.40 Aligned_cols=88 Identities=26% Similarity=0.349 Sum_probs=48.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHHHH
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (175)
.+++|.||||||||||++.++...++. .+.+.... ....+..+. ...+.+.+++..... ......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~--~~~~~~~~--------~~~~~~~~~--l~~i~~~lG~~~~~~---~~~~~~ 108 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQE--RVVAAKLV--------NTRVDAEDL--LRMVAADFGLETEGR---DKAALL 108 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCC--CeEEeeee--------CCCCCHHHH--HHHHHHHcCCCCCCC---CHHHHH
Confidence 378999999999999999999987752 33222110 001122222 234556666654321 111122
Q ss_pred HHHHHHHHH-HhhccCCCCEEEEeCC
Q 030566 83 DNLDDWLAE-ELDNYLDDDYLVFDCP 107 (175)
Q Consensus 83 ~~~~~~l~~-~l~~~~~p~lliLDEP 107 (175)
.+....+.. .... ++.++++||.
T Consensus 109 ~~l~~~l~~~~~~~--~~~vliiDe~ 132 (269)
T TIGR03015 109 RELEDFLIEQFAAG--KRALLVVDEA 132 (269)
T ss_pred HHHHHHHHHHHhCC--CCeEEEEECc
Confidence 222233332 3344 6789999997
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2e-06 Score=77.49 Aligned_cols=38 Identities=26% Similarity=0.507 Sum_probs=31.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccc--eeEEeecC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLD 39 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G--~I~i~g~~ 39 (175)
|++++++||||+||||++..|++.+....| +|.+...|
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D 224 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD 224 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc
Confidence 789999999999999999999999876666 56655444
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.6e-07 Score=74.39 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=32.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
+|.+++++|+||+|||||++.|+|...+..|+|..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~ 197 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE 197 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence 47899999999999999999999999999999986
|
|
| >TIGR03498 FliI_clade3 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.1e-07 Score=77.12 Aligned_cols=39 Identities=26% Similarity=0.249 Sum_probs=36.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~ 39 (175)
+|+.++|+|+||+|||||+++|++..+|+.|.|.+.|..
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer 177 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGER 177 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeee
Confidence 589999999999999999999999999999988888764
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-06 Score=72.82 Aligned_cols=38 Identities=21% Similarity=0.134 Sum_probs=30.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE-eec
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI-VNL 38 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i-~g~ 38 (175)
+|+++.|.|++|+|||||+..++.......+.+.+ .+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 48999999999999999999998877665566644 444
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.5e-06 Score=72.97 Aligned_cols=147 Identities=12% Similarity=0.152 Sum_probs=73.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHH--HccCccccceeEEeecCccc------ccCCCCccCCcchhccHHHHHHHhCCCCCC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSL--YRHCETVRRTMHIVNLDPAA------ENFDYPVAMDIRELISLEDVMEELGLGPNG 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i--~gl~~~~~G~I~i~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 72 (175)
+|.++.|.|++|||||||..-. .|..+..+.-+++....... ...+|.. + +.... ..+..+......
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~--~--~~~~~-g~l~~~~~~~~~ 94 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDL--Q--KLVDE-GKLFILDASPDP 94 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCH--H--HHhhc-CceEEEecCchh
Confidence 4889999999999999999876 45555444556665433211 1222221 0 00000 000000000000
Q ss_pred --chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEe--CC---CcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchh
Q 030566 73 --GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFD--CP---GQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCI 145 (175)
Q Consensus 73 --~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLD--EP---~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~ 145 (175)
........+.... ..+...+.. .+++.+++| -. ........+..+.++++.+++.|.|+ ++++|+.+
T Consensus 95 ~~~~~~~~~~l~~~l-~~i~~~ls~-g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~Li~~L~~~g~Tv----LLtsh~~~ 168 (484)
T TIGR02655 95 EGQDVVGGFDLSALI-ERINYAIRK-YKAKRVSIDSVTAVFQQYDAVSVVRREIFRLVARLKQIGVTT----VMTTERIE 168 (484)
T ss_pred ccccccccCCHHHHH-HHHHHHHHH-hCCcEEEEeehhHhhhhcCchHHHHHHHHHHHHHHHHCCCEE----EEEecCcc
Confidence 0000000011111 111122221 277788888 22 11111223345666888888889999 99999876
Q ss_pred h--------h-hcCCCceeEec
Q 030566 146 R--------F-RTLPPCIVCFC 158 (175)
Q Consensus 146 ~--------~-~~~~~~~~~~~ 158 (175)
+ + +.++|.++.|.
T Consensus 169 ~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 169 EYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred cccccccCCceeEeeeeEEEEE
Confidence 4 2 56778888776
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.6e-07 Score=74.00 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=31.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
|++++++|+||+|||||++.|.|...++.|++..
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~ 194 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISE 194 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhhccccceec
Confidence 5789999999999999999999999999999875
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PLN03046 D-glycerate 3-kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.8e-07 Score=76.99 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=33.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccc---cceeEEeecCc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDP 40 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~---~G~I~i~g~~~ 40 (175)
-++||.|++|||||||++.|.+++++. .|.|.++++..
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYL 253 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYL 253 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccC
Confidence 379999999999999999999999765 68888888653
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.6e-07 Score=77.08 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=29.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcccccee
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTM 33 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I 33 (175)
+|++++|+|+||||||||+++|+|+.+++.+.+
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vi 186 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYTQADVVVV 186 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcccCCCeEEE
Confidence 599999999999999999999999998875433
|
|
| >PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.8e-07 Score=69.28 Aligned_cols=41 Identities=24% Similarity=0.220 Sum_probs=33.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccc-cceeEEeecCcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPA 41 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~-~G~I~i~g~~~~ 41 (175)
+|.+++|+|+||||||||.+.|++.+.+. .|.+.++|.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 47899999999999999999999977654 457888876543
|
|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.9e-06 Score=66.66 Aligned_cols=27 Identities=41% Similarity=0.420 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCcc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+..+.|.|++||||||+++.+...+++
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 357999999999999999988766654
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.1e-07 Score=77.16 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+|++++++||||+||||+++.|++..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999999864
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.7e-07 Score=76.49 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=35.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~ 39 (175)
+|+.++|+|+||+|||||+++|++..+++.|.+.+.|..
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 599999999999999999999999999999888777754
|
|
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.6e-06 Score=65.43 Aligned_cols=57 Identities=14% Similarity=0.133 Sum_probs=38.7
Q ss_pred CCCEEEEeCCCcc-----cccccchHHHHHHHHHHhCCCcEEEEEeeeccc---------hhhhhcCCCceeEec
Q 030566 98 DDDYLVFDCPGQI-----ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQV---------CIRFRTLPPCIVCFC 158 (175)
Q Consensus 98 ~p~lliLDEP~~~-----~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~---------~~~~~~~~~~~~~~~ 158 (175)
+++.+++|=.+.. +....+..+..+++.+++.|.|+ ++++|. ...++.+||.++.++
T Consensus 107 ~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tv----ll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 107 GASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTT----ILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred CCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEE----EEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 7889999954221 11112345666888888889999 888884 233677889888885
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.8e-07 Score=65.78 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=24.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcc----Cccccc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH----CETVRR 31 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl----~~~~~G 31 (175)
.++++|+||||||||++.+.|. ..|+.|
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g 47 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASEDISHITPTQG 47 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcCCCcccCCCCC
Confidence 4899999999999999999997 446666
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.9e-07 Score=75.83 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=36.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~ 39 (175)
+|++++|+|+||+|||||+++|++..+++.|.+.+.|..
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer 200 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGER 200 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccC
Confidence 599999999999999999999999999999988888764
|
|
| >PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein [] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.2e-05 Score=60.09 Aligned_cols=114 Identities=15% Similarity=0.240 Sum_probs=57.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHHHH
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (175)
.++.+.|+|||||||+.+.+..-.. ..|.+.++.-..+. +.+ ...+....- ............+
T Consensus 16 ~~~i~aG~~GsGKSt~~~~~~~~~~-~~~~v~i~~D~~r~----~~p--------~~~~~~~~~---~~~~~~~~~~~a~ 79 (199)
T PF06414_consen 16 TLIIIAGQPGSGKSTLARQLLEEFG-GGGIVVIDADEFRQ----FHP--------DYDELLKAD---PDEASELTQKEAS 79 (199)
T ss_dssp EEEEEES-TTSTTHHHHHHHHHHT--TT-SEEE-GGGGGG----GST--------THHHHHHHH---CCCTHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHhhhhcc-CCCeEEEehHHHHH----hcc--------chhhhhhhh---hhhhHHHHHHHHH
Confidence 3678889999999999999877654 45667776443322 111 011222211 1111111112222
Q ss_pred HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeee
Q 030566 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (175)
Q Consensus 83 ~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~ 140 (175)
......+..++.+ ...+ ++|-+ +...+...++++.+++.|-.|.++++.+
T Consensus 80 ~~~~~~~~~a~~~--~~ni-i~E~t-----l~~~~~~~~~~~~~k~~GY~v~l~~v~~ 129 (199)
T PF06414_consen 80 RLAEKLIEYAIEN--RYNI-IFEGT-----LSNPSKLRKLIREAKAAGYKVELYYVAV 129 (199)
T ss_dssp HHHHHHHHHHHHC--T--E-EEE-------TTSSHHHHHHHHHHHCTT-EEEEEEE--
T ss_pred HHHHHHHHHHHHc--CCCE-EEecC-----CCChhHHHHHHHHHHcCCceEEEEEEEC
Confidence 3344455556666 5555 45888 6666666678888888888776654443
|
It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 175 | ||||
| 1yr6_A | 262 | Pab0955 Crystal Structure : A Gtpase In Apo Form Fr | 1e-11 |
| >pdb|1YR6|A Chain A, Pab0955 Crystal Structure : A Gtpase In Apo Form From Pyrococcus Abyssi Length = 262 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 175 | |||
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 9e-49 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 1e-04 |
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Length = 262 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 9e-49
Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
+ +G AGSGK+T R+ E + VNLD + Y ++D+RE +++E++
Sbjct: 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKV-AYVNLDTGVKELPYEPSIDVREFVTVEEI 73
Query: 63 MEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122
M E G GPNG ++ + L + +++L + L ++DY++ D PGQ+E F
Sbjct: 74 MRE-GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRL 132
Query: 123 VDHLKSRNFNVCAVYLLDSQVC 144
+++L VY+ D ++
Sbjct: 133 MENLPYP----LVVYISDPEIL 150
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 1e-04
Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 15/74 (20%)
Query: 9 GPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-------------PAAENFDYPVAMDIRE 55
G + SGK+T + L + ++ + ++D Y + D+
Sbjct: 29 GLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEW 88
Query: 56 LISLEDVMEELGLG 69
L + +L
Sbjct: 89 LT--HQLFRQLKAS 100
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 175 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.98 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.98 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.98 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.97 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.97 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.97 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.97 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.97 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.97 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.97 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.97 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.97 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.97 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.96 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 99.96 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.96 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.96 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.96 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.96 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.95 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.95 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.95 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.95 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.95 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.95 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.95 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.94 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.94 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.94 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.94 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.94 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.94 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.94 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.94 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.91 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.91 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.91 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.9 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.89 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.89 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.89 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.88 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.87 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.86 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.86 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.83 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.83 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.83 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.82 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.81 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.81 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.8 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.79 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.79 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.79 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.79 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.79 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.78 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.77 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.76 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.73 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.73 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.72 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.72 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.72 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.71 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.71 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.68 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.65 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.64 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.64 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.63 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.59 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.59 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.59 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.58 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.57 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.57 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.57 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.57 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.56 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.56 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.55 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.55 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.53 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.53 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.53 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.51 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.5 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.49 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.46 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.43 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.43 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.4 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.38 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.38 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.33 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.32 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.31 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.28 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.28 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.24 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.21 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.21 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.21 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.2 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.19 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.19 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.17 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.14 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.14 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.12 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.12 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.12 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.11 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 99.1 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.09 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.08 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.06 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.06 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.05 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 99.04 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.04 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.03 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.03 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.02 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.0 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 98.99 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.98 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.97 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.95 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.93 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.91 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.89 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 98.88 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.88 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.86 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.86 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.86 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.86 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.84 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.84 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.78 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.75 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.74 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.74 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.69 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.69 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.69 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 98.68 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 98.66 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.65 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.65 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.64 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.64 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 98.61 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.59 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 98.59 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.54 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.54 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.53 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 98.52 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.52 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.51 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 98.5 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.47 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 98.47 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 98.46 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.42 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.4 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 98.38 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 98.38 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.36 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.35 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.33 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.33 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 98.3 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 98.26 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 98.26 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.26 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 98.24 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 98.24 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.24 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.2 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.19 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 98.18 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 98.17 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 98.17 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.17 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.17 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 98.15 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.15 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 98.15 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 98.14 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 98.12 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.11 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.09 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 98.09 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 98.07 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 98.07 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.06 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 98.04 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 98.03 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 98.02 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 98.02 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.0 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.98 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.97 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.97 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.96 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.96 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.94 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.94 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.93 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 97.88 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.87 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.87 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.86 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 97.86 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.86 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.85 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.84 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 97.82 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.82 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 97.82 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.81 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 97.81 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.81 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 97.81 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.79 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.79 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.79 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.78 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.77 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 97.77 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 97.77 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 97.76 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.76 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.76 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.76 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.75 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.75 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 97.74 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.73 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.73 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.72 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.71 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.69 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 97.67 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.66 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.66 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 97.66 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 97.64 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 97.62 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 97.61 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 97.6 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 97.6 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.6 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 97.59 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.59 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 97.58 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.58 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 97.58 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 97.58 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.57 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.57 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.57 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.56 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 97.54 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.54 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 97.53 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.52 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 97.52 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 97.51 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.51 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 97.5 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 97.49 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 97.49 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 97.48 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 97.48 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 97.48 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.47 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 97.47 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 97.46 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 97.45 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 97.44 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 97.44 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 97.43 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.43 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 97.43 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 97.42 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 97.42 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 97.41 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.4 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 97.4 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 97.38 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 97.38 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 97.38 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 97.37 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 97.37 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 97.37 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 97.36 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 97.36 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 97.36 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.36 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 97.35 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 97.35 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 97.35 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.35 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 97.35 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 97.34 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 97.34 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 97.34 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 97.34 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 97.34 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.33 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 97.33 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 97.33 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 97.32 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 97.32 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 97.32 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 97.31 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 97.31 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 97.31 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 97.3 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 97.29 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 97.28 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 97.28 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 97.27 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 97.27 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 97.27 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 97.27 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 97.27 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 97.27 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 97.26 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 97.26 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 97.26 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 97.26 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 97.26 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 97.26 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 97.25 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 97.24 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 97.24 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 97.24 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 97.23 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 97.23 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 97.22 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 97.22 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 97.22 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 97.21 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 97.21 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 97.21 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 97.21 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 97.2 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 97.19 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 97.19 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 97.19 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 97.18 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 97.18 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 97.17 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 97.17 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 97.17 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 97.16 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 97.15 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 97.15 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 97.15 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 97.15 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 97.15 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 97.15 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 97.15 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 97.14 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 97.14 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 97.14 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 97.13 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 97.13 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 97.13 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 97.13 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 97.12 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 97.12 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 97.12 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 97.12 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 97.12 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 97.12 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 97.12 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 97.12 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 97.11 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 97.11 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 97.09 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 97.09 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 97.09 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 97.09 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 97.08 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 97.07 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 97.07 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 97.07 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 97.07 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 97.07 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 97.06 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 97.06 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 97.06 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 97.05 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 97.05 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 97.05 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 97.05 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 97.05 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 97.05 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 97.05 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 97.05 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 97.05 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 97.04 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 97.04 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 97.04 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 97.03 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 97.03 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 97.03 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 97.02 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 97.02 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 97.02 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 97.01 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 97.01 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 97.0 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 97.0 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 97.0 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 96.99 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 96.99 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.98 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.98 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 96.97 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 96.97 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 96.96 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 96.96 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.95 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 96.95 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 96.95 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 96.94 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 96.93 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 96.93 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 96.93 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 96.92 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.91 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 96.91 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 96.9 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.89 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 96.89 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 96.88 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 96.88 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 96.88 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 96.88 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 96.87 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 96.87 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 96.86 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 96.86 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 96.86 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 96.86 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 96.85 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.83 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.83 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 96.81 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 96.8 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 96.78 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 96.77 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 96.77 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 96.75 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 96.7 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 96.68 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.68 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 96.65 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.64 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 96.63 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 96.62 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 96.61 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.56 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 96.56 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 96.55 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 96.55 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.54 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 96.52 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 96.5 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 96.49 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 96.47 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 96.46 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.46 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=236.82 Aligned_cols=161 Identities=12% Similarity=0.132 Sum_probs=125.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCC-------CCccCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFD-------YPVAMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~-------~~~~~~~~~~~~----- 58 (175)
+||++||+||||||||||+|+|+|+++|++|+|.++|.++.. +.++ +.+.+++.+++.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~ 132 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 132 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh
Confidence 599999999999999999999999999999999999976421 1222 333345555442
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..|+||..+||+++. +|++|+||||+...+......+.++|++++
T Consensus 133 ~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~--~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~ 210 (366)
T 3tui_C 133 DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS--NPKVLLCDQATSALDPATTRSILELLKDIN 210 (366)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTT--CCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 2356677777543322222234459999999999999 999999999966666667778888999986
Q ss_pred h-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 128 S-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+ .|.|| +++||+++++..+||++++|..|..+.+++
T Consensus 211 ~~~g~Ti----i~vTHdl~~~~~~aDrv~vl~~G~iv~~g~ 247 (366)
T 3tui_C 211 RRLGLTI----LLITHEMDVVKRICDCVAVISNGELIEQDT 247 (366)
T ss_dssp HHSCCEE----EEEESCHHHHHHHCSEEEEEETTEEEECCB
T ss_pred HhCCCEE----EEEecCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 4 59999 999999999999999999999988765543
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=229.75 Aligned_cols=159 Identities=11% Similarity=0.083 Sum_probs=122.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc---------cccCCCCc--------cCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDYPV--------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~---------~~~~~~~~--------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+.+++.+ ..++.+++.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~ 112 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVN 112 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHH
Confidence 59999999999999999999999999999999999998652 11233332 223333321
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..|+||..+|++++. +|++||||||+...+......+.+++++++
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~--~P~lLlLDEPts~LD~~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 113 MKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM--EPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190 (275)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTT--CCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 2345666666543322222234459999999999999 999999999977666777778888999986
Q ss_pred -hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 128 -SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 128 -~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
++|.|| +++||+++++..+||++++|..|..+.+
T Consensus 191 ~~~g~tv----i~vtHdl~~~~~~~drv~~l~~G~i~~~ 225 (275)
T 3gfo_A 191 KELGITI----IIATHDIDIVPLYCDNVFVMKEGRVILQ 225 (275)
T ss_dssp HHHCCEE----EEEESCCSSGGGGCSEEEEEETTEEEEE
T ss_pred hhCCCEE----EEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 569999 9999999999999999999998876543
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-34 Score=220.14 Aligned_cols=158 Identities=16% Similarity=0.061 Sum_probs=121.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCCCC-------ccCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYP-------VAMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~-------~~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++. +.+++.+++.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~ 108 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPML 108 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHH
Confidence 599999999999999999999999999999999999876421 122222 2234444332
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..|+||..+++++.. +|++++||||+...+......+.++++++
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~~~~~l~~l 186 (224)
T 2pcj_A 109 KMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALAN--EPILLFADEPTGNLDSANTKRVMDIFLKI 186 (224)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTT--CCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 1345666776544333332234459999999999999 99999999996666677777888899999
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+++|.|| +++||+++++ .+||+++++..|..+.+
T Consensus 187 ~~~g~tv----i~vtHd~~~~-~~~d~v~~l~~G~i~~~ 220 (224)
T 2pcj_A 187 NEGGTSI----VMVTHERELA-ELTHRTLEMKDGKVVGE 220 (224)
T ss_dssp HHTTCEE----EEECSCHHHH-TTSSEEEEEETTEEEEE
T ss_pred HHCCCEE----EEEcCCHHHH-HhCCEEEEEECCEEEEE
Confidence 7779999 9999999987 89999999998876543
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=223.41 Aligned_cols=158 Identities=16% Similarity=0.095 Sum_probs=121.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------ccCC-------CCccCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFD-------YPVAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------~~~~-------~~~~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.++ +.+.+++.+++.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~ 119 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS 119 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 599999999999999999999999999999999999876421 1122 223334444432
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCC
Q 030566 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
..++++.+++..........-+..|+||..++++++. +|++++||||+...+...+..+.++|++++++|.
T Consensus 120 ~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~ 197 (256)
T 1vpl_A 120 SSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMV--NPRLAILDEPTSGLDVLNAREVRKILKQASQEGL 197 (256)
T ss_dssp HHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCC
Confidence 1234556666533222222233459999999999999 9999999999766667777788889999977799
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
|| +++||+++++..+||+++++..|..+.
T Consensus 198 ti----iivtHd~~~~~~~~d~v~~l~~G~i~~ 226 (256)
T 1vpl_A 198 TI----LVSSHNMLEVEFLCDRIALIHNGTIVE 226 (256)
T ss_dssp EE----EEEECCHHHHTTTCSEEEEEETTEEEE
T ss_pred EE----EEEcCCHHHHHHHCCEEEEEECCEEEE
Confidence 99 999999999999999999998887653
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-34 Score=235.16 Aligned_cols=158 Identities=16% Similarity=0.084 Sum_probs=123.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-----c-------ccCCCCccCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----A-------ENFDYPVAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----~-------~~~~~~~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|+++. . ++..+.+.+++.+++.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~ 107 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK 107 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCH
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCH
Confidence 59999999999999999999999999999999999997642 1 2233444556665553
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CC
Q 030566 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
..++++.+++..........-+..|+||.+|+|++.. +|++|+||||....+...+..+.+.|++++++ |.
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~--~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~ 185 (381)
T 3rlf_A 108 EVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA--EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185 (381)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHH--CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCC
Confidence 2345666666543322222234459999999999999 99999999996666666677788899998654 99
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
|+ +++||+++++..+||++++|..|..+-
T Consensus 186 ti----i~vTHd~~ea~~~aDri~vl~~G~i~~ 214 (381)
T 3rlf_A 186 TM----IYVTHDQVEAMTLADKIVVLDAGRVAQ 214 (381)
T ss_dssp EE----EEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred EE----EEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99 999999999999999999999887653
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=220.78 Aligned_cols=158 Identities=13% Similarity=0.047 Sum_probs=118.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCC-------CCccCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFD-------YPVAMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~-------~~~~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.++ +.+.+++.+++.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~ 109 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLI 109 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHH
Confidence 599999999999999999999999999999999999975421 1122 223334444331
Q ss_pred ---------------HHHHHHHhCCCCCC-chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030566 59 ---------------LEDVMEELGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..++++.+++.... ......-+..|+||..++++++. +|+++|||||+...+......+.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~--~p~llllDEPts~LD~~~~~~i~~~ 187 (235)
T 3tif_A 110 FKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALAN--NPPIILADQPTWALDSKTGEKIMQL 187 (235)
T ss_dssp TCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred hhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHH
Confidence 12455556664321 11222223459999999999999 9999999999666667777788889
Q ss_pred HHHHHhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 123 VDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 123 l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+++++++ |.|| +++||+++. ..+||++++|+.|..+..
T Consensus 188 l~~l~~~~g~tv----i~vtHd~~~-~~~~d~i~~l~~G~i~~~ 226 (235)
T 3tif_A 188 LKKLNEEDGKTV----VVVTHDINV-ARFGERIIYLKDGEVERE 226 (235)
T ss_dssp HHHHHHHHCCEE----EEECSCHHH-HTTSSEEEEEETTEEEEE
T ss_pred HHHHHHHcCCEE----EEEcCCHHH-HHhCCEEEEEECCEEEEE
Confidence 9998654 9999 999999985 589999999999876543
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=223.56 Aligned_cols=158 Identities=16% Similarity=0.147 Sum_probs=120.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc---------cccCCCC-------ccCCcchhcc------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDYP-------VAMDIRELIS------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~---------~~~~~~~-------~~~~~~~~~~------ 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+.++|. +.+++.+++.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~ 128 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKV 128 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999997642 0112222 2234433321
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..|+||..++++++. +|++++||||+...+...+..+.+++++++
T Consensus 129 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~--~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 206 (263)
T 2olj_A 129 RKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAM--EPKIMLFDEPTSALDPEMVGEVLSVMKQLA 206 (263)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 1234555665433222222233449999999999999 999999999977666777778888999997
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
++|.|| +++||+++++..+||+++++..|..+.
T Consensus 207 ~~g~tv----i~vtHd~~~~~~~~d~v~~l~~G~i~~ 239 (263)
T 2olj_A 207 NEGMTM----VVVTHEMGFAREVGDRVLFMDGGYIIE 239 (263)
T ss_dssp HTTCEE----EEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred hCCCEE----EEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 779999 999999999999999999999887654
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=224.35 Aligned_cols=158 Identities=15% Similarity=0.123 Sum_probs=120.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc--------------------cccCCCC-------ccCCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------------------AENFDYP-------VAMDI 53 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~--------------------~~~~~~~-------~~~~~ 53 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+.+++. +.+++
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv 110 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 110 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcH
Confidence 59999999999999999999999999999999999987643 0112222 22344
Q ss_pred chhcc-----------------HHHHHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCccccccc
Q 030566 54 RELIS-----------------LEDVMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTH 115 (175)
Q Consensus 54 ~~~~~-----------------~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~ 115 (175)
.+++. ..++++.+++... .......-+..|+||..++++++. +|++++||||+...+...
T Consensus 111 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~ 188 (262)
T 1b0u_A 111 LENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAM--EPDVLLFDEPTSALDPEL 188 (262)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTSCHHH
T ss_pred HHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHH
Confidence 33332 1234555555432 111222223448999999999999 999999999976666777
Q ss_pred chHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 116 VPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 116 ~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
+..+.+++++++++|.|| +++||+++++..+||+++++..|..+.
T Consensus 189 ~~~~~~~l~~l~~~g~tv----i~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (262)
T 1b0u_A 189 VGEVLRIMQQLAEEGKTM----VVVTHEMGFARHVSSHVIFLHQGKIEE 233 (262)
T ss_dssp HHHHHHHHHHHHHTTCCE----EEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHhCCCEE----EEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 778888999997779999 999999999999999999999887654
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=231.88 Aligned_cols=158 Identities=15% Similarity=0.092 Sum_probs=118.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc---------cccCCCC-------ccCCcchhcc------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDYP-------VAMDIRELIS------ 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~---------~~~~~~~-------~~~~~~~~~~------ 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|+++. .+.+++. +.+++.+++.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~ 108 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG 108 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc
Confidence 59999999999999999999999999999999999987641 1223333 3334443331
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH-H
Q 030566 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL-K 127 (175)
Q Consensus 59 ----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l-~ 127 (175)
..++++.+++..........-+..|+||.+|+|+++. +|++|+||||....+...+..+++.++++ +
T Consensus 109 ~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~--~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~ 186 (359)
T 3fvq_A 109 KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAP--DPELILLDEPFSALDEQLRRQIREDMIAALR 186 (359)
T ss_dssp SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 2345566666543322222223449999999999999 99999999996665566666777666665 5
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
+.|.|+ +++||+++++..+||++++|..|..+-
T Consensus 187 ~~g~tv----i~vTHd~~ea~~~aDri~vl~~G~i~~ 219 (359)
T 3fvq_A 187 ANGKSA----VFVSHDREEALQYADRIAVMKQGRILQ 219 (359)
T ss_dssp HTTCEE----EEECCCHHHHHHHCSEEEEEETTEEEE
T ss_pred hCCCEE----EEEeCCHHHHHHHCCEEEEEECCEEEE
Confidence 679999 999999999999999999999887654
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=221.60 Aligned_cols=158 Identities=17% Similarity=0.060 Sum_probs=117.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCcc-------CCcchhc--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPVA-------MDIRELI-------- 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~~-------~~~~~~~-------- 57 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+++.+. +++.+++
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~ 111 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPG 111 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhc
Confidence 599999999999999999999999999999999999876421 12333321 1111110
Q ss_pred ---------------------cHHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccc
Q 030566 58 ---------------------SLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHV 116 (175)
Q Consensus 58 ---------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~ 116 (175)
...++++.+++..........-+..|+||..++++++. +|++++||||+...+....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~--~p~lllLDEPts~LD~~~~ 189 (257)
T 1g6h_A 112 ESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMT--NPKMIVMDEPIAGVAPGLA 189 (257)
T ss_dssp SCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTCCHHHH
T ss_pred cCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHH
Confidence 01234444554332222222223348999999999999 9999999999777667777
Q ss_pred hHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 117 PVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 117 ~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
..+.+++++++++|.|| +++||+++++..+||+++++..|..+.
T Consensus 190 ~~l~~~l~~l~~~g~tv----i~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 190 HDIFNHVLELKAKGITF----LIIEHRLDIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp HHHHHHHHHHHHTTCEE----EEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHCCCEE----EEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 88888999987779999 999999999999999999998876553
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=222.70 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=122.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------------ccCCCCccCCcchhcc--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------------~~~~~~~~~~~~~~~~-------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +...+.+.+++.+++.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 115 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGG 115 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCc
Confidence 599999999999999999999999999999999999976432 1112223334444331
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccC----CCCEEEEeCCCcccccccchHHHHHHHHHHh
Q 030566 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYL----DDDYLVFDCPGQIELFTHVPVLRNFVDHLKS 128 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~ 128 (175)
..++++.+++..........-+..|+||..++++++... +|++||||||+...+......+.++++++++
T Consensus 116 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~ 195 (266)
T 4g1u_C 116 SQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR 195 (266)
T ss_dssp TTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHH
Confidence 345677777765433333223445999999999988522 8999999999666666677788889999865
Q ss_pred C-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 129 R-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 129 ~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
+ +.|| +++||+++++..+||++++|..|..+.+
T Consensus 196 ~~~~tv----i~vtHdl~~~~~~~d~v~vl~~G~i~~~ 229 (266)
T 4g1u_C 196 QEPLAV----CCVLHDLNLAALYADRIMLLAQGKLVAC 229 (266)
T ss_dssp HSSEEE----EEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred cCCCEE----EEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence 5 5799 9999999999999999999998876644
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=220.46 Aligned_cols=158 Identities=14% Similarity=0.074 Sum_probs=116.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCc-------cCCcchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++|.+ .+++.+++.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~ 110 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK 110 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCC
Confidence 599999999999999999999999999999999999976421 1133332 222222211
Q ss_pred --------HHHHHHHh-CCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC
Q 030566 59 --------LEDVMEEL-GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 --------~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
..++++.+ ++..........-+..|+||..+++++.. +|++++||||+...+......+.+++++++++
T Consensus 111 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~ 188 (240)
T 1ji0_A 111 DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS--RPKLLMMDEPSLGLAPILVSEVFEVIQKINQE 188 (240)
T ss_dssp CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTT--CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC
Confidence 12233333 23222111111123348999999999999 99999999997776677778888899998777
Q ss_pred CCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
|.|| +++||+++++..+||+++++..|..+.
T Consensus 189 g~tv----i~vtHd~~~~~~~~d~v~~l~~G~i~~ 219 (240)
T 1ji0_A 189 GTTI----LLVEQNALGALKVAHYGYVLETGQIVL 219 (240)
T ss_dssp TCCE----EEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCEE----EEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999 999999999999999999998876653
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=219.08 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=119.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-----cccCCCCc-------cCCcchhcc------------
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDYPV-------AMDIRELIS------------ 58 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----~~~~~~~~-------~~~~~~~~~------------ 58 (175)
|+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+.++|.+ .+++.+++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~ 104 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERD 104 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHH
Confidence 799999999999999999999999999999999997642 12233333 223333221
Q ss_pred --HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCCcEEE
Q 030566 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCA 135 (175)
Q Consensus 59 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvli 135 (175)
..++++.+++..........-+..|+||..++++++. +|++++||||+...+...+..+.++++++++ +|.||
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~--~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tv-- 180 (240)
T 2onk_A 105 RRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI--QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPI-- 180 (240)
T ss_dssp HHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTT--CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCE--
T ss_pred HHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE--
Confidence 1345555666543322222234459999999999999 9999999999776667777788889999865 48999
Q ss_pred EEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 136 VYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 136 ~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
+++||+++++..+||+++++..|..+.
T Consensus 181 --i~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 181 --LHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp --EEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred --EEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999887654
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-33 Score=228.88 Aligned_cols=157 Identities=15% Similarity=0.105 Sum_probs=121.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-----cccC-------CCCccCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENF-------DYPVAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----~~~~-------~~~~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+.+ .+.+.+++.+++.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~ 119 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPK 119 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence 59999999999999999999999999999999999987642 1222 2333445555442
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CC
Q 030566 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~ 131 (175)
..++++.+++..........-+..|+||.+|+|++.. +|++++||||....+...+..+++.|++++++ |.
T Consensus 120 ~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 197 (355)
T 1z47_A 120 DEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAP--RPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV 197 (355)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 1345566666543322222233449999999999999 99999999996666666777888889988654 89
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|+ +++||+++++..++|++++|..|..+
T Consensus 198 tv----i~vTHd~~~a~~~adri~vl~~G~i~ 225 (355)
T 1z47_A 198 TS----VFVTHDQEEALEVADRVLVLHEGNVE 225 (355)
T ss_dssp EE----EEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred EE----EEECCCHHHHHHhCCEEEEEECCEEE
Confidence 99 99999999999999999999987654
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-33 Score=228.77 Aligned_cols=157 Identities=17% Similarity=0.082 Sum_probs=120.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-----cccCC-------CCccCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFD-------YPVAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----~~~~~-------~~~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+.++ +.+.+++.+++.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~ 107 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISK 107 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 59999999999999999999999999999999999987642 12222 233344444331
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCC
Q 030566 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~ 131 (175)
..++++.+++..........-+..|+||.+++|++.. +|++++||||....+...+..+++.++++++ .|.
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 185 (359)
T 2yyz_A 108 DEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK--QPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGI 185 (359)
T ss_dssp HHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 2345666666543322222234459999999999999 9999999999666666677788889998865 489
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|+ +++||+++++..++|++++|..|..+
T Consensus 186 tv----i~vTHd~~~~~~~adri~vl~~G~i~ 213 (359)
T 2yyz_A 186 TS----VYVTHDQAEAMTMASRIAVFNQGKLV 213 (359)
T ss_dssp EE----EEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred EE----EEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 99 99999999999999999999987654
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-33 Score=228.37 Aligned_cols=157 Identities=15% Similarity=0.066 Sum_probs=122.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-----cccC-------CCCccCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENF-------DYPVAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----~~~~-------~~~~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+.+ .+.+.+++.+++.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~ 107 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPR 107 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCH
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 49999999999999999999999999999999999987642 1222 2334445555442
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCC
Q 030566 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNF 131 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~ 131 (175)
..++++.+++..........-+..|+||.+++|++.. +|++++||||....+...+..+.+.|+++++ .|.
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 185 (362)
T 2it1_A 108 EEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK--EPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI 185 (362)
T ss_dssp HHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCC
Confidence 2345667777654333332234459999999999999 9999999999666666667778888998865 489
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|+ +++||+++++..++|++++|..|..+
T Consensus 186 tv----i~vTHd~~~a~~~adri~vl~~G~i~ 213 (362)
T 2it1_A 186 TT----VYVTHDQAEALAMADRIAVIREGEIL 213 (362)
T ss_dssp EE----EEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred EE----EEECCCHHHHHHhCCEEEEEECCEEE
Confidence 99 99999999999999999999988654
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-33 Score=227.29 Aligned_cols=158 Identities=14% Similarity=0.099 Sum_probs=123.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-----cccC-------CCCccCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENF-------DYPVAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----~~~~-------~~~~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+.+ .+.+.+++.+++.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~ 104 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD 104 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence 59999999999999999999999999999999999997642 1122 3334445555543
Q ss_pred ---HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCCcEE
Q 030566 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVC 134 (175)
Q Consensus 59 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvl 134 (175)
..++++.+++..........-+..|+||.+|+|++.. +|++++||||....+...+..+++.|+++++ .|.|+
T Consensus 105 ~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~--~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~ti- 181 (348)
T 3d31_A 105 PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVT--NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTV- 181 (348)
T ss_dssp HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTS--CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEE-
T ss_pred HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEE-
Confidence 2345667777654333332234459999999999999 9999999999666666677788889999864 58999
Q ss_pred EEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 135 AVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 135 i~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
+++||+++++..++|++++|..|..+.
T Consensus 182 ---i~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 182 ---LHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp ---EEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred ---EEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999887653
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.98 E-value=8.4e-33 Score=213.58 Aligned_cols=154 Identities=12% Similarity=0.074 Sum_probs=118.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc--c-------ccCCCCccCCcchhcc-------------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--A-------ENFDYPVAMDIRELIS------------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~--~-------~~~~~~~~~~~~~~~~------------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++. . ++..+.+.+++.+++.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~ 113 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKN 113 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHH
Confidence 59999999999999999999999999999999999987641 1 1222222334443322
Q ss_pred -HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEE
Q 030566 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (175)
Q Consensus 59 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~ 137 (175)
..++++.+++... ......-+..|+||..+++++.. +|++++||||+...+......+.+++++++++|.||
T Consensus 114 ~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~--~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~ti---- 186 (214)
T 1sgw_A 114 EIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLV--NAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV---- 186 (214)
T ss_dssp HHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTS--CCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEE----
T ss_pred HHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEE----
Confidence 2345666776544 22222234459999999999999 999999999977777777888888999987668999
Q ss_pred eeeccchhhhhcCCCceeEeccch
Q 030566 138 LLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 138 l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
+++||+++++..+++++++++...
T Consensus 187 iivtHd~~~~~~~~d~v~~~~~~~ 210 (214)
T 1sgw_A 187 IISSREELSYCDVNENLHKYSTKI 210 (214)
T ss_dssp EEEESSCCTTSSEEEEGGGGBC--
T ss_pred EEEeCCHHHHHHhCCEEEEeCCcc
Confidence 999999999999999998887653
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=8e-33 Score=227.91 Aligned_cols=157 Identities=17% Similarity=0.076 Sum_probs=120.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCC-------CCccCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFD-------YPVAMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~-------~~~~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.++ +.+.+++.+++.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~ 109 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN 109 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHH
Confidence 499999999999999999999999999999999999865421 1222 223334444321
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..|+||.+++|++.. +|++++||||....+...+..+++.|++++
T Consensus 110 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~--~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 187 (353)
T 1oxx_K 110 MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK--DPSLLLLDEPFSNLDARMRDSARALVKEVQ 187 (353)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCGGGHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 2345566666543322222233449999999999999 999999999977766777888888999986
Q ss_pred h-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 128 S-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 128 ~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+ .|.|+ +++||+++++..+||++++|..|..+
T Consensus 188 ~~~g~tv----i~vTHd~~~~~~~adri~vl~~G~i~ 220 (353)
T 1oxx_K 188 SRLGVTL----LVVSHDPADIFAIADRVGVLVKGKLV 220 (353)
T ss_dssp HHHCCEE----EEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HhcCCEE----EEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 5 48999 99999999999999999999887654
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-32 Score=227.79 Aligned_cols=158 Identities=16% Similarity=0.061 Sum_probs=121.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCC-------CCccCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFD-------YPVAMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~-------~~~~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. +.++ +.+.+++.+++.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 107 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK 107 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 599999999999999999999999999999999999865421 1222 233445554432
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+..|+||.+|+|++.. +|++++||||....+...+..+++.|+++
T Consensus 108 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 185 (372)
T 1g29_1 108 LRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR--KPQVFLMDEPLSNLDAKLRVRMRAELKKL 185 (372)
T ss_dssp HTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT--CCSEEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEECCCCccCCHHHHHHHHHHHHHH
Confidence 1345666666543322222234459999999999999 99999999996666666777888889988
Q ss_pred Hh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 127 KS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 127 ~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
++ .|.|+ +++||+++++..++|++++|..|..+.
T Consensus 186 ~~~~g~tv----i~vTHd~~~a~~~adri~vl~~G~i~~ 220 (372)
T 1g29_1 186 QRQLGVTT----IYVTHDQVEAMTMGDRIAVMNRGVLQQ 220 (372)
T ss_dssp HHHHTCEE----EEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHhcCCEE----EEECCCHHHHHHhCCEEEEEeCCEEEE
Confidence 65 48999 999999999999999999999876543
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-32 Score=216.50 Aligned_cols=158 Identities=19% Similarity=0.100 Sum_probs=120.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc----cccCCCCc--------cCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFDYPV--------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~----~~~~~~~~--------~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+.+++.+ ..++.+++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~ 111 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR 111 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHH
Confidence 59999999999999999999999999999999999987642 11222222 123222211
Q ss_pred -----HHHHHHHhCCC--CCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCC
Q 030566 59 -----LEDVMEELGLG--PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 59 -----~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
..++++.+++. .........-+..|+||..++++++. +|++++||||+...+......+.+++++++++|.
T Consensus 112 ~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~ 189 (266)
T 2yz2_A 112 DPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVH--EPDILILDEPLVGLDREGKTDLLRIVEKWKTLGK 189 (266)
T ss_dssp CSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHc--CCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCC
Confidence 23456666665 32222222234458999999999999 9999999999777677778888889999876799
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
|| +++||+++++..+||+++++..|..+.
T Consensus 190 ti----i~vtHd~~~~~~~~d~v~~l~~G~i~~ 218 (266)
T 2yz2_A 190 TV----ILISHDIETVINHVDRVVVLEKGKKVF 218 (266)
T ss_dssp EE----EEECSCCTTTGGGCSEEEEEETTEEEE
T ss_pred EE----EEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99 999999999999999999998876653
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-32 Score=228.34 Aligned_cols=155 Identities=16% Similarity=0.117 Sum_probs=117.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-----cccCCCC-------ccCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDYP-------VAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----~~~~~~~-------~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+.+++. +.+++.+++.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~ 115 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK 115 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCH
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 59999999999999999999999999999999999987642 1223332 2333333321
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-
Q 030566 59 ------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR- 129 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~- 129 (175)
..++++.+++....... ..++| |+||.+|+|++.. +|++++||||....+...+..+++.|++++++
T Consensus 116 ~~~~~~v~~~l~~~~L~~~~~r~--~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 191 (372)
T 1v43_A 116 DEIDKRVRWAAELLQIEELLNRY--PAQLSGGQRQRVAVARAIVV--EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL 191 (372)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSC--TTTCCSSCHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhC
Confidence 12345555554322111 23344 8899999999999 99999999996666666777888899998654
Q ss_pred CCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|.|+ +++||+++++..++|++++|..|..+
T Consensus 192 g~tv----i~vTHd~~~a~~~adri~vl~~G~i~ 221 (372)
T 1v43_A 192 KVTT----IYVTHDQVEAMTMGDRIAVMNRGQLL 221 (372)
T ss_dssp TCEE----EEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred CCEE----EEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 8999 99999999999999999999987654
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-32 Score=214.52 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=119.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCC-------CccCCcchhcc--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~-------~~~~~~~~~~~-------- 58 (175)
+||+++|+||||||||||+|+|+|+++|+ |+|.++|.++.. +.++| .+.+++.+++.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 103 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTR 103 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCCc
Confidence 59999999999999999999999999999 999999876421 11222 22233333221
Q ss_pred ---HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCC-------EEEEeCCCcccccccchHHHHHHHHHHh
Q 030566 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDD-------YLVFDCPGQIELFTHVPVLRNFVDHLKS 128 (175)
Q Consensus 59 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~-------lliLDEP~~~~~~~~~~~~~~~l~~l~~ 128 (175)
..++++.+++..........-+..|+||..++++++. +|+ +++||||+...+....+.+.++++++++
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~--~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~ 181 (249)
T 2qi9_C 104 TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ--ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ 181 (249)
T ss_dssp HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHH--HCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHc--CCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence 2345666666433222222233459999999999999 999 9999999777677777888889999876
Q ss_pred CCCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 129 RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 129 ~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+|.|| +++||+++++..+||+++++..|..+
T Consensus 182 ~g~tv----iivtHd~~~~~~~~d~v~~l~~G~i~ 212 (249)
T 2qi9_C 182 QGLAI----VMSSHDLNHTLRHAHRAWLLKGGKML 212 (249)
T ss_dssp TTCEE----EEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCEE----EEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 79999 99999999999999999999887654
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-32 Score=212.86 Aligned_cols=159 Identities=15% Similarity=0.145 Sum_probs=116.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcc--CccccceeEEeecCccc--------ccCCCCc-------cCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl--~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+ ++|++|+|.++|.++.. ..+++.+ .+++.+++.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 107 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQA 107 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHh
Confidence 5999999999999999999999998 78999999999976421 1233332 123323221
Q ss_pred --------------HHHHHHHhCCC-CCCchhhhH-HHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030566 59 --------------LEDVMEELGLG-PNGGLIYCM-EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 --------------~~~~~~~~~l~-~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..++++.+++. ......... -+..|+||..+++++.. +|++++||||+...+......+.++
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~--~p~lllLDEPts~LD~~~~~~l~~~ 185 (250)
T 2d2e_A 108 KLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL--EPTYAVLDETDSGLDIDALKVVARG 185 (250)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH--CCSEEEEECGGGTTCHHHHHHHHHH
T ss_pred hccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 12344555663 211111111 23349999999999999 9999999999666666777788889
Q ss_pred HHHHHhCCCcEEEEEeeeccchhhhhcC-CCceeEeccchhhHH
Q 030566 123 VDHLKSRNFNVCAVYLLDSQVCIRFRTL-PPCIVCFCCTHTVVQ 165 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~~~~~~~-~~~~~~~~~~~~~~~ 165 (175)
+++++++|.|| +++||+++++..+ ||+++++..|..+..
T Consensus 186 l~~l~~~g~tv----i~vtHd~~~~~~~~~d~v~~l~~G~i~~~ 225 (250)
T 2d2e_A 186 VNAMRGPNFGA----LVITHYQRILNYIQPDKVHVMMDGRVVAT 225 (250)
T ss_dssp HHHHCSTTCEE----EEECSSSGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHhcCCEE----EEEecCHHHHHHhcCCEEEEEECCEEEEE
Confidence 99987678999 9999999999998 599999988876543
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-32 Score=217.78 Aligned_cols=161 Identities=13% Similarity=0.155 Sum_probs=118.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc--c-------ccCCCCc---------cCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--A-------ENFDYPV---------AMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~--~-------~~~~~~~---------~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++. . +.+++.+ .+++.+++.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~ 125 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAF 125 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC-
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhh
Confidence 59999999999999999999999999999999999997653 1 1222222 112222211
Q ss_pred ----------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030566 59 ----------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 ----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..++++.+++..........-+..|+||..+++++.. +|++++||||+...+...+..+.++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lLlLDEPts~LD~~~~~~l~~~ 203 (279)
T 2ihy_A 126 KSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMG--QPQVLILDEPAAGLDFIARESLLSI 203 (279)
T ss_dssp --------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred hccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCccccCHHHHHHHHHH
Confidence 1234455555432222222223448999999999999 9999999999776667777788889
Q ss_pred HHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 123 VDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
|++++++|.||. .+++||+++++..+||+++++..|..+.+
T Consensus 204 l~~l~~~g~tv~--~iivtHd~~~~~~~~d~v~~l~~G~i~~~ 244 (279)
T 2ihy_A 204 LDSLSDSYPTLA--MIYVTHFIEEITANFSKILLLKDGQSIQQ 244 (279)
T ss_dssp HHHHHHHCTTCE--EEEEESCGGGCCTTCCEEEEEETTEEEEE
T ss_pred HHHHHHCCCEEE--EEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 999876677762 15689999999999999999998876543
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-32 Score=212.24 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=112.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCCCCC-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNG- 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 72 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ +....+. .++.+++.+....
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~--Q~~~l~~-~tv~enl~~~~~~~ 110 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVL--QDNVLLN-RSIIDNISLANPGM 110 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEEC--SSCCCTT-SBHHHHHTTTCTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEe--CCCcccc-ccHHHHHhccCCCC
Confidence 599999999999999999999999999999999999976532 1233333 1111222 1333333332100
Q ss_pred c-----------------------------hhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 73 G-----------------------------LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 73 ~-----------------------------~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
. .....-+..|+||..++++++. +|++++||||+...+......+.+++
T Consensus 111 ~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~--~p~lllLDEPts~LD~~~~~~i~~~l 188 (247)
T 2ff7_A 111 SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN--NPKILIFDEATSALDYESEHVIMRNM 188 (247)
T ss_dssp CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT--CCSEEEECCCCSCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 0 0001123348999999999999 99999999997776677777888899
Q ss_pred HHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
++++ +|.|| +++||+++.+. .||++++|..|..+.
T Consensus 189 ~~~~-~g~tv----iivtH~~~~~~-~~d~v~~l~~G~i~~ 223 (247)
T 2ff7_A 189 HKIC-KGRTV----IIIAHRLSTVK-NADRIIVMEKGKIVE 223 (247)
T ss_dssp HHHH-TTSEE----EEECSSGGGGT-TSSEEEEEETTEEEE
T ss_pred HHHc-CCCEE----EEEeCCHHHHH-hCCEEEEEECCEEEE
Confidence 9885 58999 99999999886 499999999887653
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-31 Score=210.99 Aligned_cols=155 Identities=13% Similarity=0.158 Sum_probs=115.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeec-CcccccCCCCccCCcchhc--------------------cH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPAAENFDYPVAMDIRELI--------------------SL 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~-~~~~~~~~~~~~~~~~~~~--------------------~~ 59 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.+... ..-.++..+.+.+++.+++ ..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~ 109 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHH
Confidence 59999999999999999999999999999999974210 0001111222222222211 12
Q ss_pred HHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CCcEEEEEe
Q 030566 60 EDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAVYL 138 (175)
Q Consensus 60 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~tvli~~l 138 (175)
.++++.+++..........-+..|+||..++++++. +|++++||||+...+...+..+.+++++++++ |.|| +
T Consensus 110 ~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tv----i 183 (253)
T 2nq2_C 110 MQALDYLNLTHLAKREFTSLSGGQRQLILIARAIAS--ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTV----V 183 (253)
T ss_dssp HHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT--TCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEE----E
T ss_pred HHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE----E
Confidence 446666776543322222234459999999999999 99999999997776777778888899998766 8999 9
Q ss_pred eeccchhhhhcCCCceeEeccch
Q 030566 139 LDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
++||+++++..+||+++++..|.
T Consensus 184 ~vtHd~~~~~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 184 FTTHQPNQVVAIANKTLLLNKQN 206 (253)
T ss_dssp EEESCHHHHHHHCSEEEEEETTE
T ss_pred EEecCHHHHHHhCCEEEEEeCCe
Confidence 99999999999999999998876
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=210.11 Aligned_cols=156 Identities=15% Similarity=0.026 Sum_probs=113.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCcc------CCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA------MDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~------~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+. .++.+++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~ 106 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTD 106 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccCCCCH
Confidence 599999999999999999999999999999999999976421 22333331 12222111
Q ss_pred --HHHHHHHhCCCCCCchh-----------hhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHH
Q 030566 59 --LEDVMEELGLGPNGGLI-----------YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 59 --~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
...+++.+++....... ...-+..|+||..+++++.. +|++++||||+...+......+.+++++
T Consensus 107 ~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~--~p~lllLDEPts~LD~~~~~~i~~~l~~ 184 (243)
T 1mv5_A 107 EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR--NPKILMLDEATASLDSESESMVQKALDS 184 (243)
T ss_dssp HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCSCSSCSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 12233333332211100 01123348999999999999 9999999999777777778888889999
Q ss_pred HHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 126 LKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 126 l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
++ +|.|| +++||+++.+. .||+++++..|..+.
T Consensus 185 ~~-~~~tv----i~vtH~~~~~~-~~d~v~~l~~G~i~~ 217 (243)
T 1mv5_A 185 LM-KGRTT----LVIAHRLSTIV-DADKIYFIEKGQITG 217 (243)
T ss_dssp HH-TTSEE----EEECCSHHHHH-HCSEEEEEETTEECC
T ss_pred hc-CCCEE----EEEeCChHHHH-hCCEEEEEECCEEEE
Confidence 87 68999 99999999886 599999998877653
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-31 Score=209.54 Aligned_cols=159 Identities=14% Similarity=0.119 Sum_probs=117.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcc--CccccceeEEeecCccc--------ccCCCCc-------cCCcchhc------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELI------ 57 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl--~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~------ 57 (175)
+||+++|+||||||||||+|+|+|+ ++|++|+|.++|.++.. ..+++.+ .+++.+++
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~ 124 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNA 124 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHh
Confidence 5999999999999999999999999 47999999999876421 1122222 11221111
Q ss_pred -----------------cHHHHHHHhCCCCC-Cchhhh-HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchH
Q 030566 58 -----------------SLEDVMEELGLGPN-GGLIYC-MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 58 -----------------~~~~~~~~~~l~~~-~~~~~~-~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
...++++.+++... ...... .-+..|+||..++++++. +|+++|||||+...+...+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~--~p~lLlLDEPts~LD~~~~~~ 202 (267)
T 2zu0_C 125 VRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL--EPELCILDESDSGLDIDALKV 202 (267)
T ss_dssp HHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHH--CCSEEEEESTTTTCCHHHHHH
T ss_pred hhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHH
Confidence 02345566676422 212211 134459999999999999 999999999966666777778
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeccchhhhhcC-CCceeEeccchhhHH
Q 030566 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTL-PPCIVCFCCTHTVVQ 165 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~-~~~~~~~~~~~~~~~ 165 (175)
+.+++++++++|.|| +++||+++++..+ ||+++++..|..+.+
T Consensus 203 l~~~l~~l~~~g~tv----iivtHd~~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 203 VADGVNSLRDGKRSF----IIVTHYQRILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHHTTCCSSCEE----EEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHhcCCEE----EEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence 888888887678999 9999999999887 899999988766543
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-31 Score=209.23 Aligned_cols=156 Identities=17% Similarity=0.080 Sum_probs=111.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCcc------CCcchhccH--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA------MDIRELISL-------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~------~~~~~~~~~-------- 59 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.++|.+. .++.+++..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~ 123 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTM 123 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcccCChH
Confidence 599999999999999999999999999999999999976522 12333331 122222110
Q ss_pred ------------HHHHHHh--CCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHH
Q 030566 60 ------------EDVMEEL--GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 60 ------------~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
.++++.+ ++..........-+..|+||..++++++. +|+++|||||+...+......+.++|++
T Consensus 124 ~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~~~l~~ 201 (271)
T 2ixe_A 124 EEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR--KPRLLILDNATSALDAGNQLRVQRLLYE 201 (271)
T ss_dssp HHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 0111222 11111111111123348999999999999 9999999999666667777788888988
Q ss_pred HHh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhh
Q 030566 126 LKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 126 l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+++ +|.|| +++||+++++.. ||++++|..|..+
T Consensus 202 ~~~~~g~tv----iivtHd~~~~~~-~d~v~~l~~G~i~ 235 (271)
T 2ixe_A 202 SPEWASRTV----LLITQQLSLAER-AHHILFLKEGSVC 235 (271)
T ss_dssp CTTTTTSEE----EEECSCHHHHTT-CSEEEEEETTEEE
T ss_pred HHhhcCCEE----EEEeCCHHHHHh-CCEEEEEECCEEE
Confidence 754 58999 999999999875 9999999887654
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-30 Score=204.35 Aligned_cols=154 Identities=11% Similarity=0.112 Sum_probs=114.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----ccCC-CCc-----cCCcchhcc------------H
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFD-YPV-----AMDIRELIS------------L 59 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----~~~~-~~~-----~~~~~~~~~------------~ 59 (175)
||+++|+||||||||||+|+|+|++ |++|+|.++|.++.. +.++ |.+ ..++.+++. .
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~ 108 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLF 108 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHH
Confidence 8999999999999999999999999 999999999865421 2233 433 223333332 2
Q ss_pred HHHHHHhCCC-CCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEe
Q 030566 60 EDVMEELGLG-PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (175)
Q Consensus 60 ~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l 138 (175)
.++++.+++. .........-+..|+||..+++++.. +|++++||||+...+...+..+.++++++++ || +
T Consensus 109 ~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tv----i 179 (263)
T 2pjz_A 109 LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALAS--QPEIVGLDEPFENVDAARRHVISRYIKEYGK---EG----I 179 (263)
T ss_dssp HHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHT--CCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EE----E
T ss_pred HHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEECCccccCHHHHHHHHHHHHHhcC---cE----E
Confidence 3456666665 32222222223449999999999999 9999999999666666666677777777633 88 9
Q ss_pred eeccchhhhhcCCC-ceeEeccchhhHH
Q 030566 139 LDSQVCIRFRTLPP-CIVCFCCTHTVVQ 165 (175)
Q Consensus 139 ~~sH~~~~~~~~~~-~~~~~~~~~~~~~ 165 (175)
++||+++++..+|| +++++..+..+.+
T Consensus 180 ivtHd~~~~~~~~d~~i~~l~~G~i~~~ 207 (263)
T 2pjz_A 180 LVTHELDMLNLYKEYKAYFLVGNRLQGP 207 (263)
T ss_dssp EEESCGGGGGGCTTSEEEEEETTEEEEE
T ss_pred EEEcCHHHHHHhcCceEEEEECCEEEEe
Confidence 99999999999999 9999998876543
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-30 Score=210.91 Aligned_cols=155 Identities=12% Similarity=0.093 Sum_probs=112.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCCCCCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNGG 73 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ +....|. .++.+++.++....
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~--Q~~~lf~-~Tv~eNi~~~~~~~ 155 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVP--QDTVLFN-DTIADNIRYGRVTA 155 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEEC--SSCCCCS-EEHHHHHHTTSTTC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEe--cCCccCc-ccHHHHHHhhcccC
Confidence 499999999999999999999999999999999999987532 2234433 2112221 13333333221100
Q ss_pred h------------------------------hhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 74 L------------------------------IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 74 ~------------------------------~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
. ....-+..|+||..|||++.. +|++||||||+...+......+.+.|
T Consensus 156 ~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~--~p~iLlLDEPts~LD~~~~~~i~~~l 233 (306)
T 3nh6_A 156 GNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK--APGIILLDEATSALDTSNERAIQASL 233 (306)
T ss_dssp CHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCSSCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHHHHH
Confidence 0 000113348999999999999 99999999996655566666777788
Q ss_pred HHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++.+ +.|+ +++||+++.+.. ||++++|+.|..+-++
T Consensus 234 ~~l~~-~~Tv----i~itH~l~~~~~-aD~i~vl~~G~iv~~G 270 (306)
T 3nh6_A 234 AKVCA-NRTT----IVVAHRLSTVVN-ADQILVIKDGCIVERG 270 (306)
T ss_dssp HHHHT-TSEE----EEECCSHHHHHT-CSEEEEEETTEEEEEE
T ss_pred HHHcC-CCEE----EEEEcChHHHHc-CCEEEEEECCEEEEEC
Confidence 88754 6899 999999999987 9999999988776543
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-30 Score=205.66 Aligned_cols=155 Identities=17% Similarity=0.101 Sum_probs=109.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCcc------CCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA------MDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~------~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+|+|+|+++| +|+|.++|.++.. +.++|.+. .++.+++.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~ 123 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDE 123 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCCCCHH
Confidence 5999999999999999999999999987 8999999976532 12333331 12222211
Q ss_pred -HHHHHHHhCCCCC-----C------chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 -LEDVMEELGLGPN-----G------GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l~~~-----~------~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
...+++.+++... . ......-+..|+||..++++++. +|++++||||+...+......+.++++++
T Consensus 124 ~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~~~l~~l 201 (260)
T 2ghi_A 124 EVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK--DPKIVIFDEATSSLDSKTEYLFQKAVEDL 201 (260)
T ss_dssp HHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 0112222222100 0 00001123348999999999999 99999999996666666777888889888
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
++ +.|| +++||+++.+. .||+++++..|..+.
T Consensus 202 ~~-~~tv----iivtH~~~~~~-~~d~i~~l~~G~i~~ 233 (260)
T 2ghi_A 202 RK-NRTL----IIIAHRLSTIS-SAESIILLNKGKIVE 233 (260)
T ss_dssp TT-TSEE----EEECSSGGGST-TCSEEEEEETTEEEE
T ss_pred cC-CCEE----EEEcCCHHHHH-hCCEEEEEECCEEEE
Confidence 54 7899 99999999886 599999998886653
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-30 Score=200.74 Aligned_cols=156 Identities=15% Similarity=0.010 Sum_probs=104.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC-cccccCCCCccCCcchhcc---------HHHHHHHhCCCC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLGP 70 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~ 70 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.- ...+...+.+ .++.+++. ....++..++..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~ 111 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP-GTIKENIIFGVSYDEYRYRSVIKACQLEE 111 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCS-BCHHHHHHTTSCCCHHHHHHHHHHTTCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccC-CCHHHHhhccCCcChHHHHHHHHHhCcHH
Confidence 599999999999999999999999999999999998731 1112222222 24443321 112222222211
Q ss_pred ------CCc-----hhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH-HHHHHhCCCcEEEEEe
Q 030566 71 ------NGG-----LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF-VDHLKSRNFNVCAVYL 138 (175)
Q Consensus 71 ------~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~-l~~l~~~g~tvli~~l 138 (175)
... .....-+..|+||..+++++.. +|++++||||+...+......+.+. +++++ ++.|| +
T Consensus 112 ~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~--~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tv----i 184 (229)
T 2pze_A 112 DISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTR----I 184 (229)
T ss_dssp HHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHS--CCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEE----E
T ss_pred HHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEE----E
Confidence 000 0001123449999999999999 9999999999555555545555554 33433 47899 9
Q ss_pred eeccchhhhhcCCCceeEeccchhhHH
Q 030566 139 LDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
++||+++++. .||+++++..+..+.+
T Consensus 185 ~vtH~~~~~~-~~d~v~~l~~G~i~~~ 210 (229)
T 2pze_A 185 LVTSKMEHLK-KADKILILHEGSSYFY 210 (229)
T ss_dssp EECCCHHHHH-HCSEEEEEETTEEEEE
T ss_pred EEcCChHHHH-hCCEEEEEECCEEEEE
Confidence 9999999886 5999999998876543
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-29 Score=216.20 Aligned_cols=155 Identities=14% Similarity=0.098 Sum_probs=114.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--ccCCCCccCCcchhcc-------------HHHHHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELIS-------------LEDVMEE 65 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--~~~~~~~~~~~~~~~~-------------~~~~~~~ 65 (175)
+||++||+||||||||||+|+|+|+.+|++|+|.+++..+.. +.....+..++.+++. ..++++.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~ 372 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKR 372 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHH
Confidence 599999999999999999999999999999999987655321 1111111223333221 1223333
Q ss_pred hCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCCcEEEEEeeeccch
Q 030566 66 LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQVC 144 (175)
Q Consensus 66 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~ 144 (175)
+++..........-+..++||.++|++++. +|++||||||+...+...+..+.++|+++++ .|.|| +++||++
T Consensus 373 ~~l~~~~~~~~~~LSGGq~QRv~iAraL~~--~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tv----i~vsHdl 446 (538)
T 3ozx_A 373 LNLHRLLESNVNDLSGGELQKLYIAATLAK--EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT----FIIDHDL 446 (538)
T ss_dssp TTGGGCTTSBGGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEE----EEECSCH
T ss_pred cCCHHHhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE----EEEeCCH
Confidence 343322222222223349999999999999 9999999999777777777788889999864 68999 9999999
Q ss_pred hhhhcCCCceeEeccch
Q 030566 145 IRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 145 ~~~~~~~~~~~~~~~~~ 161 (175)
+++..+||++++|+.+.
T Consensus 447 ~~~~~~aDri~vl~~~~ 463 (538)
T 3ozx_A 447 SIHDYIADRIIVFKGEP 463 (538)
T ss_dssp HHHHHHCSEEEEEEEET
T ss_pred HHHHHhCCEEEEEeCCc
Confidence 99999999999998754
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=198.61 Aligned_cols=155 Identities=18% Similarity=0.079 Sum_probs=104.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC-cccccCCCCccCCcchhcc---------HHHHHHHhCC--
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGL-- 68 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l-- 68 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.- .-.++.. .+..++.+++. ...+.+.+++
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~ 108 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAW-IQNDSLRENILFGCQLEEPYYRSVIQACALLP 108 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCC-CCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCc-CCCcCHHHHhhCccccCHHHHHHHHHHHhhHH
Confidence 599999999999999999999999999999999998731 0111111 12223333321 1222222221
Q ss_pred ----CCC-----CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHH---HHHhCCCcEEEE
Q 030566 69 ----GPN-----GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD---HLKSRNFNVCAV 136 (175)
Q Consensus 69 ----~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~---~l~~~g~tvli~ 136 (175)
.+. .......-+..|+||..+++++.. +|++++||||+...+......+.+.+. ++ .+|.||
T Consensus 109 ~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~~~~tv--- 182 (237)
T 2cbz_A 109 DLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS--NADIYLFDDPLSAVDAHVGKHIFENVIGPKGM-LKNKTR--- 182 (237)
T ss_dssp HHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEESTTTTSCHHHHHHHHHHTTSTTST-TTTSEE---
T ss_pred HHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHHHHHHHHHhh-cCCCEE---
Confidence 110 001111123459999999999999 999999999955555555555555553 33 248899
Q ss_pred EeeeccchhhhhcCCCceeEeccchhhH
Q 030566 137 YLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 137 ~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
+++||+++.+. .||+++++..|..+.
T Consensus 183 -iivtH~~~~~~-~~d~v~~l~~G~i~~ 208 (237)
T 2cbz_A 183 -ILVTHSMSYLP-QVDVIIVMSGGKISE 208 (237)
T ss_dssp -EEECSCSTTGG-GSSEEEEEETTEEEE
T ss_pred -EEEecChHHHH-hCCEEEEEeCCEEEE
Confidence 99999999875 699999998876653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-28 Score=211.36 Aligned_cols=155 Identities=15% Similarity=0.054 Sum_probs=114.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcccccee-----------EEeecCccc-------c------cCCCCcc------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTM-----------HIVNLDPAA-------E------NFDYPVA------ 50 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I-----------~i~g~~~~~-------~------~~~~~~~------ 50 (175)
+||++||+||||||||||+|+|+|+++|++|+| .+.|.++.. . ...+...
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLK 103 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhcc
Confidence 599999999999999999999999999999998 455554311 0 0111110
Q ss_pred CCcchhc-------cHHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 51 MDIRELI-------SLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 51 ~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
.++.+.+ ...++++.+++..........-+..++|+..|++++.. +|++|+||||+...+......+.++|
T Consensus 104 ~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~--~p~illlDEPts~LD~~~~~~l~~~l 181 (538)
T 3ozx_A 104 GTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLR--EADVYIFDQPSSYLDVRERMNMAKAI 181 (538)
T ss_dssp SBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred CcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHHHHH
Confidence 0111111 24567777777543322222234459999999999999 99999999996666666677788899
Q ss_pred HHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchh
Q 030566 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHT 162 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~ 162 (175)
+++++ |.|| +++||+++++..+||++.++..+..
T Consensus 182 ~~l~~-g~ti----i~vsHdl~~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 182 RELLK-NKYV----IVVDHDLIVLDYLTDLIHIIYGESS 215 (538)
T ss_dssp HHHCT-TSEE----EEECSCHHHHHHHCSEEEEEEEETT
T ss_pred HHHhC-CCEE----EEEEeChHHHHhhCCEEEEecCCcc
Confidence 99865 8999 9999999999999999999986543
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-28 Score=210.91 Aligned_cols=154 Identities=17% Similarity=0.059 Sum_probs=115.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcccccee---------EEeecCccc---------ccCCCCcc----------CC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTM---------HIVNLDPAA---------ENFDYPVA----------MD 52 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I---------~i~g~~~~~---------~~~~~~~~----------~~ 52 (175)
+||+++|+||||||||||+|+|+|+++|++|++ .++|.++.. ..+++.+. .+
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ 125 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGK 125 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhcc
Confidence 599999999999999999999999999999996 345544321 01111110 01
Q ss_pred cchhc-------cHHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHH
Q 030566 53 IRELI-------SLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 53 ~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
..+++ ...++++.+++..........-+..|+||..|++++.. +|++||||||+...+......+.++|++
T Consensus 126 v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~--~P~lLlLDEPTs~LD~~~~~~l~~~L~~ 203 (538)
T 1yqt_A 126 VIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLR--NATFYFFDEPSSYLDIRQRLNAARAIRR 203 (538)
T ss_dssp HHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 21211 24567888887654333322234459999999999999 9999999999766667777788889999
Q ss_pred HHhCCCcEEEEEeeeccchhhhhcCCCceeEeccc
Q 030566 126 LKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 126 l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
++++|.|| +++||+++++..+||+++++..+
T Consensus 204 l~~~g~tv----i~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 204 LSEEGKSV----LVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHTTCEE----EEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHhcCCEE----EEEeCCHHHHHHhCCEEEEEcCc
Confidence 97789999 99999999999999999999764
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.8e-29 Score=206.36 Aligned_cols=156 Identities=16% Similarity=0.089 Sum_probs=108.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+|+|+|+++ ++|+|.++|.++.. +.+++.+ ..++.+++.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~ 124 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQE 124 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhccccCHHH
Confidence 599999999999999999999999998 89999999987532 2333333 123333321
Q ss_pred HHHHHHHhCCCCCCchhhhH-----------HHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 LEDVMEELGLGPNGGLIYCM-----------EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++.......... -+..|+||.+|+|++.. +|++++||||....+...+..+++.|+++.
T Consensus 125 v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~--~P~lLLLDEPts~LD~~~~~~l~~~l~~~~ 202 (390)
T 3gd7_A 125 IWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS--KAKILLLDEPSAHLDPVTYQIIRRTLKQAF 202 (390)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT--TCCEEEEESHHHHSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHh
Confidence 22344444443211111111 23449999999999999 999999999944444455556666776653
Q ss_pred hCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 128 SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 128 ~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
++.|+ +++||+++.+ ..||++++|..|..+-+
T Consensus 203 -~~~tv----i~vtHd~e~~-~~aDri~vl~~G~i~~~ 234 (390)
T 3gd7_A 203 -ADCTV----ILCEARIEAM-LECDQFLVIEENKVRQY 234 (390)
T ss_dssp -TTSCE----EEECSSSGGG-TTCSEEEEEETTEEEEE
T ss_pred -CCCEE----EEEEcCHHHH-HhCCEEEEEECCEEEEE
Confidence 47899 9999998655 56999999998876543
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-28 Score=210.74 Aligned_cols=155 Identities=15% Similarity=0.114 Sum_probs=114.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCCC-CC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGP-NG 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 72 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ +....+. .++.+++.++. ..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~--Q~~~l~~-~tv~eni~~~~~~~ 444 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVS--QNVHLFN-DTIANNIAYAAEGE 444 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEc--CCCcccc-ccHHHHHhccCCCC
Confidence 599999999999999999999999999999999999987532 2344444 2222332 24555544432 00
Q ss_pred -chh-----------------------------hhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030566 73 -GLI-----------------------------YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 73 -~~~-----------------------------~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
... ...-+.+|+||..++|++.. +|++++||||+...+......+.+.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~--~p~illlDEpts~LD~~~~~~i~~~ 522 (582)
T 3b5x_A 445 YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR--DAPVLILDEATSALDTESERAIQAA 522 (582)
T ss_pred CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHHHH
Confidence 000 00112338999999999999 9999999999666666666677778
Q ss_pred HHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 123 VDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
++++++ |+|+ +++||+++.+. .||++++++.|..+-++
T Consensus 523 l~~~~~-~~tv----i~itH~~~~~~-~~d~i~~l~~G~i~~~g 560 (582)
T 3b5x_A 523 LDELQK-NKTV----LVIAHRLSTIE-QADEILVVDEGEIIERG 560 (582)
T ss_pred HHHHcC-CCEE----EEEecCHHHHH-hCCEEEEEECCEEEEEC
Confidence 888754 8999 99999999886 69999999988766443
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-28 Score=211.57 Aligned_cols=153 Identities=16% Similarity=0.100 Sum_probs=111.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCCC-CC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGP-NG 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 72 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ +....+. .++.+++.++. ..
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~--Q~~~l~~-~tv~eni~~~~~~~ 444 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVS--QNVHLFN-DTVANNIAYARTEE 444 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEEC--SSCCCCS-SBHHHHHHTTTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEc--cCCcCCC-CCHHHHHhccCCCC
Confidence 599999999999999999999999999999999999977532 1233333 2112222 13333332221 00
Q ss_pred -ch-----------------------------hhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030566 73 -GL-----------------------------IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 73 -~~-----------------------------~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
.. ....-+.+|+||..++|++.. +|++++||||+...+......+.+.
T Consensus 445 ~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~--~p~illlDEpts~LD~~~~~~i~~~ 522 (582)
T 3b60_A 445 YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR--DSPILILDEATSALDTESERAIQAA 522 (582)
T ss_dssp CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH--CCSEEEEETTTSSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECccccCCHHHHHHHHHH
Confidence 00 000123348999999999999 9999999999666666667777888
Q ss_pred HHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhH
Q 030566 123 VDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVV 164 (175)
Q Consensus 123 l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~ 164 (175)
++++++ |+|+ +++||+++.+. .||++++++.|..+-
T Consensus 523 l~~~~~-~~tv----i~itH~~~~~~-~~d~i~~l~~G~i~~ 558 (582)
T 3b60_A 523 LDELQK-NRTS----LVIAHRLSTIE-QADEIVVVEDGIIVE 558 (582)
T ss_dssp HHHHHT-TSEE----EEECSCGGGTT-TCSEEEEEETTEEEE
T ss_pred HHHHhC-CCEE----EEEeccHHHHH-hCCEEEEEECCEEEE
Confidence 888864 8999 99999999885 699999999887654
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-28 Score=210.72 Aligned_cols=155 Identities=17% Similarity=0.090 Sum_probs=115.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcccccee---------EEeecCccc---------ccCCCCcc----------CC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTM---------HIVNLDPAA---------ENFDYPVA----------MD 52 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I---------~i~g~~~~~---------~~~~~~~~----------~~ 52 (175)
+||+++|+||||||||||+|+|+|+++|++|++ .++|.+... ..+.+.+. .+
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t 195 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGK 195 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSB
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhcccc
Confidence 599999999999999999999999999999996 345544311 01111110 02
Q ss_pred cchhc-------cHHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHH
Q 030566 53 IRELI-------SLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 53 ~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
+.+++ ...++++.+++..........-+..|+||..|+++++. +|++|+||||+...+...+..+.++|++
T Consensus 196 v~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~--~P~lLlLDEPTs~LD~~~~~~l~~~L~~ 273 (607)
T 3bk7_A 196 VRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLR--KAHFYFFDEPSSYLDIRQRLKVARVIRR 273 (607)
T ss_dssp HHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHS--CCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 22221 24567788887643322222224459999999999999 9999999999777667777788889999
Q ss_pred HHhCCCcEEEEEeeeccchhhhhcCCCceeEeccch
Q 030566 126 LKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 126 l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
++++|.|| +++||+++++..++|+++++..+.
T Consensus 274 l~~~g~tv----IivsHdl~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 274 LANEGKAV----LVVEHDLAVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp HHHTTCEE----EEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHhcCCEE----EEEecChHHHHhhCCEEEEECCCc
Confidence 97779999 999999999999999999998653
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-28 Score=211.83 Aligned_cols=156 Identities=13% Similarity=0.027 Sum_probs=113.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeE-----------EeecCccc-------ccC------CCCcc------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA-------ENF------DYPVA------ 50 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~-----------i~g~~~~~-------~~~------~~~~~------ 50 (175)
+||++||+||||||||||+|+|+|+++|++|+|. +.|.+... ... .+...
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIK 181 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhc
Confidence 4999999999999999999999999999999983 23322110 011 01000
Q ss_pred ---CCcchh---------ccHHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchH
Q 030566 51 ---MDIREL---------ISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPV 118 (175)
Q Consensus 51 ---~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~ 118 (175)
.+..+. -...++++.+++..........-+..++|+..+++++.. +|++|+||||+...+......
T Consensus 182 ~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~--~p~llllDEPts~LD~~~~~~ 259 (608)
T 3j16_B 182 GPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQ--EADVYMFDEPSSYLDVKQRLN 259 (608)
T ss_dssp SSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHS--CCSEEEEECTTTTCCHHHHHH
T ss_pred chhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHh--CCCEEEEECcccCCCHHHHHH
Confidence 000011 013456777777543322222234459999999999999 999999999966666666777
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchh
Q 030566 119 LRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHT 162 (175)
Q Consensus 119 ~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~ 162 (175)
+.+++++++++|.|| +++||+++++..++|+++++..+..
T Consensus 260 l~~~l~~l~~~g~tv----i~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 260 AAQIIRSLLAPTKYV----ICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHGGGTTTCEE----EEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHhCCCEE----EEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 888999998889999 9999999999999999999986554
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-27 Score=208.78 Aligned_cols=155 Identities=16% Similarity=0.051 Sum_probs=112.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCCCCCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNGG 73 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ +....+. .++.+++.++....
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~--Q~~~lf~-~tv~eni~~~~~~~ 444 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVP--QETVLFS-GTIKENLKWGREDA 444 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEEC--SSCCCCS-EEHHHHHTTTCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEEC--CCCcCcC-ccHHHHHhccCCCC
Confidence 599999999999999999999999999999999999988643 1233333 1111221 12333332221100
Q ss_pred ------------------------------hhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 74 ------------------------------LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 74 ------------------------------~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
.....-+..|+||..++|++.. +|++++||||+...+......+.+.+
T Consensus 445 ~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~--~p~illlDEpts~LD~~~~~~i~~~l 522 (587)
T 3qf4_A 445 TDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK--KPKVLILDDCTSSVDPITEKRILDGL 522 (587)
T ss_dssp CHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT--CCSEEEEESCCTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHHHHH
Confidence 0000113348999999999999 99999999996665566666777778
Q ss_pred HHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++. +|+|+ +++||+++.+. .||++++++.|..+-++
T Consensus 523 ~~~~-~~~tv----i~itH~l~~~~-~~d~i~vl~~G~i~~~g 559 (587)
T 3qf4_A 523 KRYT-KGCTT----FIITQKIPTAL-LADKILVLHEGKVAGFG 559 (587)
T ss_dssp HHHS-TTCEE----EEEESCHHHHT-TSSEEEEEETTEEEEEE
T ss_pred HHhC-CCCEE----EEEecChHHHH-hCCEEEEEECCEEEEEC
Confidence 7774 58999 99999999885 89999999988766443
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-28 Score=197.63 Aligned_cols=154 Identities=16% Similarity=0.017 Sum_probs=102.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC-cccccCCCCccCCcchhcc--------HHHHHHHhCCCCC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS--------LEDVMEELGLGPN 71 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~ 71 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.- .-.+...+.+ .++.+++. ....++..++...
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~l~~~ 141 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP-GTIKENIIGVSYDEYRYRSVIKACQLEED 141 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCS-SBHHHHHHTTCCCHHHHHHHHHHTTCHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCc-ccHHHHhhCcccchHHHHHHHHHhChHHH
Confidence 599999999999999999999999999999999998731 1112222222 24444331 1112222222100
Q ss_pred ---C--ch------hhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH-HHHHHhCCCcEEEEEee
Q 030566 72 ---G--GL------IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF-VDHLKSRNFNVCAVYLL 139 (175)
Q Consensus 72 ---~--~~------~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~-l~~l~~~g~tvli~~l~ 139 (175)
. .. ....-+..|+||..++++++. +|++++||||....+......+.+. +++++ +|.|| ++
T Consensus 142 l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tv----ii 214 (290)
T 2bbs_A 142 ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTR----IL 214 (290)
T ss_dssp HHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEE----EE
T ss_pred HHhccccccchhcCccCcCCHHHHHHHHHHHHHHC--CCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEE----EE
Confidence 0 00 001123448999999999999 9999999999555445545555554 23333 47899 99
Q ss_pred eccchhhhhcCCCceeEeccchhh
Q 030566 140 DSQVCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 140 ~sH~~~~~~~~~~~~~~~~~~~~~ 163 (175)
+||+++.+. .||+++++..|..+
T Consensus 215 vtHd~~~~~-~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 215 VTSKMEHLK-KADKILILHEGSSY 237 (290)
T ss_dssp ECCCHHHHH-HSSEEEEEETTEEE
T ss_pred EecCHHHHH-cCCEEEEEECCeEE
Confidence 999999886 59999999887654
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.8e-28 Score=210.14 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=112.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccCCcchhccHHHHHHHhCCCCCC-
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAMDIRELISLEDVMEELGLGPNG- 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 72 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ +....+. .++.+++.++...
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~--Q~~~lf~-~tv~eni~~~~~~~ 456 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVL--QDTILFS-TTVKENLKYGNPGA 456 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEEC--TTCCCCS-SBHHHHHHSSSTTC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEe--CCCcccc-ccHHHHHhcCCCCC
Confidence 599999999999999999999999999999999999987542 1233332 1111111 1222222221100
Q ss_pred -----------------------ch----hhh--HHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHH
Q 030566 73 -----------------------GL----IYC--MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFV 123 (175)
Q Consensus 73 -----------------------~~----~~~--~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l 123 (175)
.. ... .-+.+|+||..+||++.. +|++++||||+...+......+.+.+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~--~p~illlDEpts~LD~~~~~~i~~~l 534 (598)
T 3qf4_B 457 TDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA--NPKILILDEATSNVDTKTEKSIQAAM 534 (598)
T ss_dssp CTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHT--CCSEEEECCCCTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHHHHH
Confidence 00 000 113348999999999999 99999999996665566666777788
Q ss_pred HHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 124 DHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 124 ~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++. +|+|+ +++||+++.+.. ||++++++.|..+-+++
T Consensus 535 ~~~~-~~~t~----i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 572 (598)
T 3qf4_B 535 WKLM-EGKTS----IIIAHRLNTIKN-ADLIIVLRDGEIVEMGK 572 (598)
T ss_dssp HHHH-TTSEE----EEESCCTTHHHH-CSEEEEECSSSEEECSC
T ss_pred HHHc-CCCEE----EEEecCHHHHHc-CCEEEEEECCEEEEECC
Confidence 8875 58999 999999999866 99999999988765543
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-27 Score=205.97 Aligned_cols=152 Identities=16% Similarity=0.130 Sum_probs=114.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc--ccccCCCCccCCcchhcc------------HHHHHHHh
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS------------LEDVMEEL 66 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~--~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 66 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.+. ..+ ..+.....+..++.+++. ..++++.+
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~ 459 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL 459 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-eEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc
Confidence 499999999999999999999999999999999762 111 112222223334433321 23456667
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH-hCCCcEEEEEeeeccchh
Q 030566 67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQVCI 145 (175)
Q Consensus 67 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-~~g~tvli~~l~~sH~~~ 145 (175)
++..........-+..++||.++++++.. +|++||||||+...+...+..+.++|++++ ++|.|| +++||+++
T Consensus 460 ~l~~~~~~~~~~LSGGe~QRv~iAraL~~--~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv----i~vsHd~~ 533 (607)
T 3bk7_A 460 GIIDLYDRNVEDLSGGELQRVAIAATLLR--DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA----LVVEHDVL 533 (607)
T ss_dssp TCTTTTTSBGGGCCHHHHHHHHHHHHHTS--CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEE----EEECSCHH
T ss_pred CCchHhcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE----EEEeCCHH
Confidence 77543322222234459999999999999 999999999977777777788888999985 568999 99999999
Q ss_pred hhhcCCCceeEecc
Q 030566 146 RFRTLPPCIVCFCC 159 (175)
Q Consensus 146 ~~~~~~~~~~~~~~ 159 (175)
++..+||+++++..
T Consensus 534 ~~~~~adrv~vl~~ 547 (607)
T 3bk7_A 534 MIDYVSDRLIVFEG 547 (607)
T ss_dssp HHHHHCSEEEEEEE
T ss_pred HHHHhCCEEEEEcC
Confidence 99999999999985
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-28 Score=209.26 Aligned_cols=159 Identities=14% Similarity=0.096 Sum_probs=111.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++.+ ..++++++.
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~ 445 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDE 445 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHH
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHH
Confidence 599999999999999999999999999999999999987532 1233332 123333332
Q ss_pred -HHHHHHHhCCCC-----------CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 -LEDVMEELGLGP-----------NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..+.++..++.. ........-+.+|+||..+||++.. +|++++||||+...+......+.+.++++
T Consensus 446 ~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~--~p~illlDEpts~LD~~~~~~i~~~l~~~ 523 (578)
T 4a82_A 446 EVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN--NPPILILDEATSALDLESESIIQEALDVL 523 (578)
T ss_dssp HHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH--CCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 112222221110 0000001123349999999999999 99999999995555555566777788777
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
. +++|+ +++||+++.+.. ||++++++.|..+-+++
T Consensus 524 ~-~~~t~----i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 558 (578)
T 4a82_A 524 S-KDRTT----LIVAHRLSTITH-ADKIVVIENGHIVETGT 558 (578)
T ss_dssp T-TTSEE----EEECSSGGGTTT-CSEEEEEETTEEEEEEC
T ss_pred c-CCCEE----EEEecCHHHHHc-CCEEEEEECCEEEEECC
Confidence 4 47899 999999999865 99999999887665443
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-27 Score=204.58 Aligned_cols=152 Identities=16% Similarity=0.133 Sum_probs=109.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc--ccccCCCCccCCcchhccH------------HHHHHHh
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELISL------------EDVMEEL 66 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~--~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 66 (175)
+||++||+||||||||||+|+|+|+.+|++|+|.+. ..+ -.++....+..++.+++.. .++++.+
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-LTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPL 389 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-ceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc
Confidence 499999999999999999999999999999999762 111 1111222233344333221 1122233
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH-hCCCcEEEEEeeeccchh
Q 030566 67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQVCI 145 (175)
Q Consensus 67 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-~~g~tvli~~l~~sH~~~ 145 (175)
++..........-+..++||.++++++.. +|++||||||+...+...+..+.++|++++ ++|.|| +++||+++
T Consensus 390 ~l~~~~~~~~~~LSGGe~qrv~lAraL~~--~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tv----i~vsHd~~ 463 (538)
T 1yqt_A 390 GIIDLYDREVNELSGGELQRVAIAATLLR--DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA----LVVEHDVL 463 (538)
T ss_dssp TCGGGTTSBGGGCCHHHHHHHHHHHHHTS--CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEE----EEECSCHH
T ss_pred CChhhhcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEE----EEEeCCHH
Confidence 33221111111223349999999999999 999999999977777777888888999986 468999 99999999
Q ss_pred hhhcCCCceeEecc
Q 030566 146 RFRTLPPCIVCFCC 159 (175)
Q Consensus 146 ~~~~~~~~~~~~~~ 159 (175)
++..+||++++|..
T Consensus 464 ~~~~~~drv~vl~~ 477 (538)
T 1yqt_A 464 MIDYVSDRLMVFEG 477 (538)
T ss_dssp HHHHHCSEEEEEEE
T ss_pred HHHHhCCEEEEEeC
Confidence 99999999999985
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-27 Score=204.19 Aligned_cols=152 Identities=13% Similarity=0.044 Sum_probs=110.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc--ccccCCCCccCCcchhc------------cHHHHHHHh
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELI------------SLEDVMEEL 66 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~--~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 66 (175)
+||+++|+||||||||||+|+|+|+.+|++|+.. .+..+ ..+.....+..++.+++ ...++++.+
T Consensus 377 ~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~-~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l 455 (608)
T 3j16_B 377 DSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI-PKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPL 455 (608)
T ss_dssp TTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC-CSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHH
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc-cCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHc
Confidence 3799999999999999999999999999999731 11110 01111111111222211 123566677
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH-hCCCcEEEEEeeeccchh
Q 030566 67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQVCI 145 (175)
Q Consensus 67 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-~~g~tvli~~l~~sH~~~ 145 (175)
++..........-+..++||.++|++++. +|++|+||||+...+...+..+.++|++++ ++|.|| +++||+++
T Consensus 456 ~l~~~~~~~~~~LSGGqkQRv~iAraL~~--~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tv----iivtHdl~ 529 (608)
T 3j16_B 456 RIDDIIDQEVQHLSGGELQRVAIVLALGI--PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTA----FIVEHDFI 529 (608)
T ss_dssp TSTTTSSSBSSSCCHHHHHHHHHHHHTTS--CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEE----EEECSCHH
T ss_pred CChhhhcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEE----EEEeCCHH
Confidence 76654333332234459999999999999 999999999977766777778888999885 569999 99999999
Q ss_pred hhhcCCCceeEecc
Q 030566 146 RFRTLPPCIVCFCC 159 (175)
Q Consensus 146 ~~~~~~~~~~~~~~ 159 (175)
++..+||++++++.
T Consensus 530 ~~~~~aDrvivl~~ 543 (608)
T 3j16_B 530 MATYLADKVIVFEG 543 (608)
T ss_dssp HHHHHCSEEEECEE
T ss_pred HHHHhCCEEEEEeC
Confidence 99999999999986
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-25 Score=208.07 Aligned_cols=160 Identities=18% Similarity=0.109 Sum_probs=112.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhccH--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELISL-------- 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~~-------- 59 (175)
+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.+++.+ .-++++++..
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~ 494 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMD 494 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHH
Confidence 599999999999999999999999999999999999987532 1122222 2244444321
Q ss_pred --HHHHHHhCC---------CCC--CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 60 --EDVMEELGL---------GPN--GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 60 --~~~~~~~~l---------~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
.+.++.... +.. .......-+..|+||..+||++.. +|++++||||+...+......+.+.++++
T Consensus 495 ~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~--~p~iliLDEpts~LD~~~~~~i~~~l~~~ 572 (1284)
T 3g5u_A 495 EIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR--NPKILLLDEATSALDTESEAVVQAALDKA 572 (1284)
T ss_dssp HHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH--CCSEEEEESTTCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 111111111 000 000000123459999999999999 99999999995554555555666777765
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
. +|+|+ +++||+++.+.. +|++++|+.|..+.++++
T Consensus 573 ~-~~~t~----i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~ 608 (1284)
T 3g5u_A 573 R-EGRTT----IVIAHRLSTVRN-ADVIAGFDGGVIVEQGNH 608 (1284)
T ss_dssp H-TTSEE----EEECSCHHHHTT-CSEEEECSSSCCCCEECH
T ss_pred c-CCCEE----EEEecCHHHHHc-CCEEEEEECCEEEEECCH
Confidence 4 58999 999999999976 999999999988765544
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-25 Score=207.98 Aligned_cols=159 Identities=13% Similarity=0.087 Sum_probs=112.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||++||+||||||||||+++|+|+++|++|+|.++|.++.. +.+++.+ ..++++++.
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~ 1137 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVS 1137 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCC
Confidence 599999999999999999999999999999999999988642 2233333 112222221
Q ss_pred ---HHHHHHHhCCCC-----CCchh------hhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHH
Q 030566 59 ---LEDVMEELGLGP-----NGGLI------YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 ---~~~~~~~~~l~~-----~~~~~------~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..+.++..++.. ..... -..-+.+|+||..++|++.. +|++|+||||+...+......+.+.++
T Consensus 1138 ~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~--~p~iLiLDEpTs~lD~~~~~~i~~~l~ 1215 (1284)
T 3g5u_A 1138 YEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVR--QPHILLLDEATSALDTESEKVVQEALD 1215 (1284)
T ss_dssp HHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHH--CCSSEEEESCSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 111122211110 00000 00123348999999999999 999999999966666666667777887
Q ss_pred HHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 125 HLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 125 ~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++ .+|+|+ +++||+++.+.. ||++++|+.|..+-+++
T Consensus 1216 ~~-~~~~tv----i~isH~l~~i~~-~dri~vl~~G~i~~~g~ 1252 (1284)
T 3g5u_A 1216 KA-REGRTC----IVIAHRLSTIQN-ADLIVVIQNGKVKEHGT 1252 (1284)
T ss_dssp HH-SSSSCE----EEECSCTTGGGS-CSEEEEEETBEEEEEEC
T ss_pred Hh-CCCCEE----EEEecCHHHHHc-CCEEEEEECCEEEEECC
Confidence 75 458999 999999999865 99999999987765443
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-24 Score=189.99 Aligned_cols=150 Identities=13% Similarity=0.070 Sum_probs=95.4
Q ss_pred CCeEEEEECCCCCcHHHHH---------------------HHHHccCcccc-------ceeEEeecCcccc---cCCC--
Q 030566 1 MGYAQLVIGPAGSGKSTYC---------------------SSLYRHCETVR-------RTMHIVNLDPAAE---NFDY-- 47 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLl---------------------k~i~gl~~~~~-------G~I~i~g~~~~~~---~~~~-- 47 (175)
+||++||+||||||||||+ +++.|+.+|+. |.|.+++.+.... .+++
T Consensus 43 ~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~~~~~ig~v~ 122 (670)
T 3ux8_A 43 RGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVT 122 (670)
T ss_dssp TTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-----CCBHHHHT
T ss_pred CCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhccchhceeeee
Confidence 5999999999999999998 89999999984 4555555432110 0000
Q ss_pred ------------------------CccCCcchhccH------------------------HHHHHHhCCCCCC-chhhhH
Q 030566 48 ------------------------PVAMDIRELISL------------------------EDVMEELGLGPNG-GLIYCM 78 (175)
Q Consensus 48 ------------------------~~~~~~~~~~~~------------------------~~~~~~~~l~~~~-~~~~~~ 78 (175)
.+.+++.+++.. ...++.+++.... ......
T Consensus 123 q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 202 (670)
T 3ux8_A 123 EIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGT 202 (670)
T ss_dssp TCC-------------------------CC--------------------------CHHHHHHHHHTTCTTCCTTCBGGG
T ss_pred chhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCchhhhcCCccc
Confidence 011122222211 1124555554321 112222
Q ss_pred HHHHHHHHHHHHHHhhccCCCC--EEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeE
Q 030566 79 EHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVC 156 (175)
Q Consensus 79 ~~~~~~~~~~l~~~l~~~~~p~--lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~ 156 (175)
-+..|+||..|++++.. +|+ +||||||+...+......+.+++++++++|.|| +++||+++.+. .||++++
T Consensus 203 LSGGe~QRv~iArAL~~--~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tv----i~vtHd~~~~~-~~d~ii~ 275 (670)
T 3ux8_A 203 LSGGEAQRIRLATQIGS--RLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTL----IVVEHDEDTML-AADYLID 275 (670)
T ss_dssp SCHHHHHHHHHHHHHHT--CCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEE----EEECCCHHHHH-HCSEEEE
T ss_pred CCHHHHHHHHHHHHHhh--CCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEE----EEEeCCHHHHh-hCCEEEE
Confidence 23449999999999999 988 999999977777777888999999998889999 99999999765 5999999
Q ss_pred e
Q 030566 157 F 157 (175)
Q Consensus 157 ~ 157 (175)
+
T Consensus 276 l 276 (670)
T 3ux8_A 276 I 276 (670)
T ss_dssp E
T ss_pred e
Confidence 9
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-24 Score=195.90 Aligned_cols=78 Identities=12% Similarity=-0.026 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEecc
Q 030566 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
+.+|+||..|++++.. +|++||||||+...+...... +++.+++.+.|| +++||+++++..+||+++++..
T Consensus 903 SGGQkQRVaLArAL~~--~P~LLLLDEPT~gLD~~s~~~---L~~~L~~~g~tV----IiISHD~e~v~~l~DrVivL~~ 973 (986)
T 2iw3_A 903 SGGQKVKLVLAAGTWQ--RPHLIVLDEPTNYLDRDSLGA---LSKALKEFEGGV----IIITHSAEFTKNLTEEVWAVKD 973 (986)
T ss_dssp CHHHHHHHHHHHHHTT--CCSEEEEECGGGTCCHHHHHH---HHHHHHSCSSEE----EEECSCHHHHTTTCCEEECCBT
T ss_pred CHHHHHHHHHHHHHHh--CCCEEEEECCccCCCHHHHHH---HHHHHHHhCCEE----EEEECCHHHHHHhCCEEEEEEC
Confidence 3449999999999999 999999999944444433333 334444456799 9999999999999999999998
Q ss_pred chhhHHh
Q 030566 160 THTVVQR 166 (175)
Q Consensus 160 ~~~~~~~ 166 (175)
|..+..+
T Consensus 974 G~Iv~~G 980 (986)
T 2iw3_A 974 GRMTPSG 980 (986)
T ss_dssp TBCCC--
T ss_pred CEEEEeC
Confidence 8766543
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-24 Score=199.44 Aligned_cols=160 Identities=17% Similarity=0.112 Sum_probs=113.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCC------ccCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYP------VAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~------~~~~~~~~~~--------- 58 (175)
+|+.++|+||+|||||||+++|.|+++|++|+|.++|.+++. +.++|+ +.-++++++.
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~ 522 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITRE 522 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHH
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHH
Confidence 599999999999999999999999999999999999987543 122222 2223444432
Q ss_pred -HHHHHH---------HhCCCCCCchhh--hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 -LEDVME---------ELGLGPNGGLIY--CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~---------~~~l~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++ .+.-+..-.... ..-+.+||||.+|||++.+ +|+++|||||+...+......+.+.++++
T Consensus 523 ~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~--~~~IliLDE~tSaLD~~te~~i~~~l~~~ 600 (1321)
T 4f4c_A 523 EMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR--NPKILLLDEATSALDAESEGIVQQALDKA 600 (1321)
T ss_dssp HHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc--CCCEEEEecccccCCHHHHHHHHHHHHHH
Confidence 112222 221111100000 0123459999999999999 99999999995444455555667777776
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
. +|+|+ +++||++..+ ..+|++++|+.|..+-++++
T Consensus 601 ~-~~~T~----iiiaHrls~i-~~aD~Iivl~~G~ive~Gth 636 (1321)
T 4f4c_A 601 A-KGRTT----IIIAHRLSTI-RNADLIISCKNGQVVEVGDH 636 (1321)
T ss_dssp H-TTSEE----EEECSCTTTT-TTCSEEEEEETTEEEEEECH
T ss_pred h-CCCEE----EEEcccHHHH-HhCCEEEEeeCCeeeccCCH
Confidence 4 58999 9999999966 67999999999998876654
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-24 Score=201.06 Aligned_cols=159 Identities=15% Similarity=0.120 Sum_probs=108.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhc---------c
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELI---------S 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~---------~ 58 (175)
+||.+||+||||||||||+++|.|+++|++|+|.+||.|+.. +.+++++ .-+.++++ .
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~s 1183 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVT 1183 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCC
Confidence 499999999999999999999999999999999999988643 1222222 12334432 1
Q ss_pred ---HHHHHHHhCCCC------C-Cchhh----hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHH
Q 030566 59 ---LEDVMEELGLGP------N-GGLIY----CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124 (175)
Q Consensus 59 ---~~~~~~~~~l~~------~-~~~~~----~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~ 124 (175)
..++++..++.. . ..... ..-+.+|+|+..|||++.+ +|++||||||+...+...-..+.+.|+
T Consensus 1184 d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr--~~~ILiLDEaTSaLD~~tE~~Iq~~l~ 1261 (1321)
T 4f4c_A 1184 MAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVR--NPKILLLDEATSALDTESEKVVQEALD 1261 (1321)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHS--CCSEEEEESCCCSTTSHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHh--CCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 122333222210 0 00000 0123459999999999999 999999999954444443444445555
Q ss_pred HHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 125 HLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 125 ~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
++ .+++|+ ++++|++..+. .+|++++|+.|.++=+++
T Consensus 1262 ~~-~~~~Tv----I~IAHRLsTi~-~aD~I~Vld~G~IvE~Gt 1298 (1321)
T 4f4c_A 1262 RA-REGRTC----IVIAHRLNTVM-NADCIAVVSNGTIIEKGT 1298 (1321)
T ss_dssp TT-SSSSEE----EEECSSSSTTT-TCSEEEEESSSSEEEEEC
T ss_pred HH-cCCCEE----EEeccCHHHHH-hCCEEEEEECCEEEEECC
Confidence 43 358999 99999999875 579999999998775544
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-24 Score=167.42 Aligned_cols=135 Identities=14% Similarity=0.142 Sum_probs=81.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEee--cCc--ccccCCCCccCCcchhc-cH-HHHHHHhCCCCCCch
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN--LDP--AAENFDYPVAMDIRELI-SL-EDVMEELGLGPNGGL 74 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g--~~~--~~~~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~ 74 (175)
+||+++|+||||||||||+|+|+|+ +|++|+|.... .+. ....+++.+. +..+++ .. ....+.+.-......
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q-~~~enl~~~~~~~~~~~~~~~~~~~ 98 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPG-TLNEKIDPYLRPLHDALRDMVEPEV 98 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC-------CTTTHHHHHHHTTTSCTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecC-CHHHHHHHHHHHHHHHHHHhccHHH
Confidence 4899999999999999999999999 99999995421 111 1234556553 223333 11 111222211001000
Q ss_pred hh-hHH-HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhc
Q 030566 75 IY-CME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRT 149 (175)
Q Consensus 75 ~~-~~~-~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~ 149 (175)
.. ..+ .+.|+||..+++++.. +|++++||||+.. ....+.++++++ ++|.|| + +||+++++..
T Consensus 99 ~~~~l~~glGq~qrv~lAraL~~--~p~lllLDEPts~----~~~~l~~~l~~l-~~g~ti----i-vtHd~~~~~~ 163 (208)
T 3b85_A 99 IPKLMEAGIVEVAPLAYMRGRTL--NDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKM----V-VTGDITQVDL 163 (208)
T ss_dssp HHHHHHTTSEEEEEGGGGTTCCB--CSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEE----E-EEEC------
T ss_pred HHHHHHhCCchHHHHHHHHHHhc--CCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEE----E-EECCHHHHhC
Confidence 00 000 1246788899999999 9999999999444 455666677777 568888 8 9999988765
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-23 Score=188.12 Aligned_cols=151 Identities=14% Similarity=0.150 Sum_probs=101.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc-cCc--cccceeEEeecCcccccC-CCCccCCcchhc---------cHHHHHHHhC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYR-HCE--TVRRTMHIVNLDPAAENF-DYPVAMDIRELI---------SLEDVMEELG 67 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~g-l~~--~~~G~I~i~g~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~ 67 (175)
+|++++|+||||||||||+|+|+| .+. +..+.+.+ ++- .++. ...+.+++.+++ ...++++.++
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~-~~v--~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lg 536 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT-VYV--EHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFG 536 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCE-EET--TCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeE-EEE--cccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcC
Confidence 599999999999999999999995 220 00011100 000 0111 112222333322 1345667777
Q ss_pred CCCC-CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhh
Q 030566 68 LGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIR 146 (175)
Q Consensus 68 l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~ 146 (175)
+... .......-+.+|+||..|++++.. +|++||||||+...+..++..+.++|++ +|.|| +++||++++
T Consensus 537 L~~~~~~~~~~~LSGGqkQRvaLArAL~~--~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tv----IivSHdl~~ 607 (986)
T 2iw3_A 537 FTDEMIAMPISALSGGWKMKLALARAVLR--NADILLLDEPTNHLDTVNVAWLVNYLNT---CGITS----ITISHDSVF 607 (986)
T ss_dssp CCHHHHHSBGGGCCHHHHHHHHHHHHHHT--TCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEE----EEECSCHHH
T ss_pred CChhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEE----EEEECCHHH
Confidence 6421 111112223459999999999999 9999999999666666666677777766 58899 999999999
Q ss_pred hhcCCCceeEeccchhh
Q 030566 147 FRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 147 ~~~~~~~~~~~~~~~~~ 163 (175)
+.++||+++++..+..+
T Consensus 608 l~~~adrii~L~~G~iv 624 (986)
T 2iw3_A 608 LDNVCEYIINYEGLKLR 624 (986)
T ss_dssp HHHHCSEEEEEETTEEE
T ss_pred HHHhCCEEEEEECCeee
Confidence 99999999999988764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-22 Score=178.09 Aligned_cols=79 Identities=15% Similarity=0.067 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhhccCCC---CEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeE
Q 030566 80 HLEDNLDDWLAEELDNYLDD---DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVC 156 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p---~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~ 156 (175)
+..|+||..|+++++. +| ++|+||||+...+......+.+++++++++|.|| +++||+++.+ ..||++++
T Consensus 545 SgG~~qrv~iAraL~~--~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tv----i~vtHd~~~~-~~~d~i~~ 617 (670)
T 3ux8_A 545 SGGEAQRVKLAAELHR--RSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTV----LVIEHNLDVI-KTADYIID 617 (670)
T ss_dssp CHHHHHHHHHHHHHHS--CCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE----EEECCCHHHH-TTCSEEEE
T ss_pred CHHHHHHHHHHHHHhh--CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEE----EEEeCCHHHH-HhCCEEEE
Confidence 3449999999999987 76 5999999966666667778888999998889999 9999999987 56999999
Q ss_pred e------ccchhhHH
Q 030566 157 F------CCTHTVVQ 165 (175)
Q Consensus 157 ~------~~~~~~~~ 165 (175)
| ..|..+.+
T Consensus 618 l~~~~g~~~G~i~~~ 632 (670)
T 3ux8_A 618 LGPEGGDRGGQIVAV 632 (670)
T ss_dssp EESSSGGGCCEEEEE
T ss_pred ecCCcCCCCCEEEEe
Confidence 9 66665543
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-23 Score=155.63 Aligned_cols=129 Identities=13% Similarity=0.094 Sum_probs=77.8
Q ss_pred CCeEEEEECCCCCcHHHHHHH------------HHccCccccceeEEeecCcccccCCCCccCCcchhcc-HHHHHHHhC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSS------------LYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS-LEDVMEELG 67 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~------------i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 67 (175)
+||+++|+||||||||||+|+ +.|+..++.|.+.+.+. ..+... ........+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~g 73 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGA--------------AFDVLHYIVSKRLQLG 73 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHH--------------HHHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHH--------------HHHHHHHHHHHHHhCC
Confidence 599999999999999999995 44444333332221110 000000 001111112
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccc----------------cchHHHHHHHHHHhCCC
Q 030566 68 LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFT----------------HVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 68 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~----------------~~~~~~~~l~~l~~~g~ 131 (175)
...... .....+-.++|+..+++++.. +|++++||||....+.. ....+.+++++++++|.
T Consensus 74 ~~~~~~-~~~~~s~g~~qrv~iAral~~--~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~ 150 (171)
T 4gp7_A 74 KLTVVD-ATNVQESARKPLIEMAKDYHC--FPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGF 150 (171)
T ss_dssp CCEEEE-SCCCSHHHHHHHHHHHHHTTC--EEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTC
T ss_pred CeEEEE-CCCCCHHHHHHHHHHHHHcCC--cEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCC
Confidence 111100 001123347888999999999 99999999993332222 22445667777776799
Q ss_pred cEEEEEeeeccchhhhhcC
Q 030566 132 NVCAVYLLDSQVCIRFRTL 150 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~ 150 (175)
|+ +++||+++++...
T Consensus 151 tv----i~vtH~~~~~~~~ 165 (171)
T 4gp7_A 151 RY----VYILNSPEEVEEV 165 (171)
T ss_dssp SE----EEEECSHHHHHHE
T ss_pred cE----EEEeCCHHHhhhh
Confidence 99 9999999998754
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-22 Score=172.49 Aligned_cols=147 Identities=14% Similarity=0.058 Sum_probs=96.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccc-e-eEEeecCcccccCCCCcc----------CCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRR-T-MHIVNLDPAAENFDYPVA----------MDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G-~-I~i~g~~~~~~~~~~~~~----------~~~~~~~~---------- 58 (175)
+|++++|+||||||||||+|+|+|+.+|++| + |.++|. + .+.+++.+. +++.+++.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~-~-~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~ 214 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD-P-QQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATL 214 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC-T-TSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC-c-cCCeeeeccchhhcccccccchhhhhcccccccCcch
Confidence 4999999999999999999999999999999 9 999883 2 223333331 11111110
Q ss_pred ---HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHH--hhccCCCCE----EEEeC-CCcccccccchHHHHHHHHH
Q 030566 59 ---LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEE--LDNYLDDDY----LVFDC-PGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ---~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~--l~~~~~p~l----liLDE-P~~~~~~~~~~~~~~~l~~l 126 (175)
...+++.+++.... . ...++ ++||.+++++ +.. +|++ +|||| |....+.. .+.+.+++
T Consensus 215 ~~~~~~ll~~~gl~~~~--~--~~~LSgGq~qrlalAra~rL~~--~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~--- 284 (460)
T 2npi_A 215 LHNKQPMVKNFGLERIN--E--NKDLYLECISQLGQVVGQRLHL--DPQVRRSGCIVDTPSISQLDEN-LAELHHII--- 284 (460)
T ss_dssp SCCBCCEECCCCSSSGG--G--CHHHHHHHHHHHHHHHHHHHHH--CHHHHHSCEEEECCCGGGSCSS-CHHHHHHH---
T ss_pred HHHHHHHHHHhCCCccc--c--hhhhhHHHHHHHHHHHHHHhcc--CcccCcceEEEeCCcccccChh-HHHHHHHH---
Confidence 00011111221111 1 23344 8899999999 999 9999 99999 83332222 33333333
Q ss_pred HhCCCcEEEEEeeeccchh------hhhcCCCc-----eeEec-cchhh
Q 030566 127 KSRNFNVCAVYLLDSQVCI------RFRTLPPC-----IVCFC-CTHTV 163 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~------~~~~~~~~-----~~~~~-~~~~~ 163 (175)
++.+.|+ ++++|+.+ ++.+++|+ +++|. .|..+
T Consensus 285 ~~~~~tv----iiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 285 EKLNVNI----MLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp HHTTCCE----EEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred HHhCCCE----EEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence 3347888 88999877 78899999 99998 66544
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.3e-21 Score=171.80 Aligned_cols=91 Identities=19% Similarity=0.075 Sum_probs=71.8
Q ss_pred HHHHHHhCCCCCC-chhhhHHHHHHHHHHHHHHHhhccCC---CCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEE
Q 030566 60 EDVMEELGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLD---DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCA 135 (175)
Q Consensus 60 ~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~---p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli 135 (175)
.++++.+++.... ......-+..++||..|++++.. + |+++|||||+...+....+.+.+++++++++|.||
T Consensus 711 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tV-- 786 (842)
T 2vf7_A 711 LDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRR--SGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTV-- 786 (842)
T ss_dssp HHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSS--CCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE--
T ss_pred HHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHh--CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE--
Confidence 3456666765421 12222223449999999999998 7 69999999977777777788888999998889999
Q ss_pred EEeeeccchhhhhcCCCceeEe
Q 030566 136 VYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 136 ~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
+++||+++++ ..||+++.|
T Consensus 787 --IvisHdl~~i-~~aDrii~L 805 (842)
T 2vf7_A 787 --IAVEHKMQVV-AASDWVLDI 805 (842)
T ss_dssp --EEECCCHHHH-TTCSEEEEE
T ss_pred --EEEcCCHHHH-HhCCEEEEE
Confidence 9999999999 789999999
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-21 Score=159.24 Aligned_cols=122 Identities=19% Similarity=0.185 Sum_probs=91.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (175)
+|++++|+||||||||||+++|+|+++|++|.|.++|.+.. ......+....+. +
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~----~~~~~~~~i~~~~----------g----------- 224 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI----VFKHHKNYTQLFF----------G----------- 224 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCC----CCSSCSSEEEEEC----------B-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecc----ccccchhEEEEEe----------C-----------
Confidence 38999999999999999999999999999999999986421 1100001000110 0
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccc
Q 030566 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCT 160 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~ 160 (175)
-.++++..+++++.. +|+++++|||...++ .+.++.+...+.|+ ++++|..+ +.+.+++++.++.+
T Consensus 225 gg~~~r~~la~aL~~--~p~ilildE~~~~e~-------~~~l~~~~~g~~tv----i~t~H~~~-~~~~~dri~~l~~g 290 (330)
T 2pt7_A 225 GNITSADCLKSCLRM--RPDRIILGELRSSEA-------YDFYNVLCSGHKGT----LTTLHAGS-SEEAFIRLANMSSS 290 (330)
T ss_dssp TTBCHHHHHHHHTTS--CCSEEEECCCCSTHH-------HHHHHHHHTTCCCE----EEEEECSS-HHHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHhhh--CCCEEEEcCCChHHH-------HHHHHHHhcCCCEE----EEEEcccH-HHHHhhhheehhcC
Confidence 235778899999999 999999999944333 34788876545579 99999988 88899999999877
Q ss_pred h
Q 030566 161 H 161 (175)
Q Consensus 161 ~ 161 (175)
.
T Consensus 291 ~ 291 (330)
T 2pt7_A 291 N 291 (330)
T ss_dssp S
T ss_pred C
Confidence 6
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-22 Score=153.46 Aligned_cols=150 Identities=11% Similarity=-0.010 Sum_probs=83.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc---cccCCCCccCCcchhccHHHHHHHhCCC----CC-C
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---AENFDYPVAMDIRELISLEDVMEELGLG----PN-G 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~-~ 72 (175)
+||+++|+||||||||||+|+|+|+++...+.+.+.+.++. .+.+++.+ +....+...++.+++... .. .
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~--q~~~~~~~~~~~~~l~~~~~~~~n~~ 96 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHF--IDPTRFQQLIDQGELLEWAEIHGGLH 96 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEE--CCHHHHHHHHHTTCEEEEEEEGGGTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEe--cCHHHHHHHHhcCCceeehhhcCchh
Confidence 59999999999999999999999999643333333332221 12334443 222223222222222100 00 0
Q ss_pred chhhhHHHHHHH------------------HHHHHHH---HhhccCCCCEEEEeCCCccc----ccccchHHHHHHHHHH
Q 030566 73 GLIYCMEHLEDN------------------LDDWLAE---ELDNYLDDDYLVFDCPGQIE----LFTHVPVLRNFVDHLK 127 (175)
Q Consensus 73 ~~~~~~~~~~~~------------------~~~~l~~---~l~~~~~p~lliLDEP~~~~----~~~~~~~~~~~l~~l~ 127 (175)
..........++ ++..... ++. .+|++++||||.... +...+..+++++++++
T Consensus 97 ~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~--~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~ 174 (207)
T 1znw_A 97 RSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFL--APPSWQDLQARLIGRGTETADVIQRRLDTARIELA 174 (207)
T ss_dssp EEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEE--ECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEE--ECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 000000011111 1111111 233 389999999992221 2223456677888886
Q ss_pred -hCCCcEEEEEeeeccchhhhhcCCCceeEec
Q 030566 128 -SRNFNVCAVYLLDSQVCIRFRTLPPCIVCFC 158 (175)
Q Consensus 128 -~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~ 158 (175)
++|.|+ +++||+++++..+|++++++.
T Consensus 175 ~~~g~tv----i~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 175 AQGDFDK----VVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp GGGGSSE----EEECSSHHHHHHHHHHHHC--
T ss_pred hhccCcE----EEECCCHHHHHHHHHHHHHhc
Confidence 458999 999999999999999999884
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-19 Score=146.93 Aligned_cols=147 Identities=14% Similarity=0.093 Sum_probs=97.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------------ccCCCCccCCcch-hccHHHHHHHh
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRE-LISLEDVMEEL 66 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------------~~~~~~~~~~~~~-~~~~~~~~~~~ 66 (175)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.+.+ +... .++..++.+++
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~--q~~~~~~~~~~v~e~l 176 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVV--AEGDKAKAATVLSKAV 176 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEEC--CC--CCCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEE--ecCCccCHHHHHHHHH
Confidence 489999999999999999999999999999999999987532 1233333 2112 22222222221
Q ss_pred CC--------------CCCCchhhhHHHHHHHHHHHHHHHhhccCCCC--EEEEeCCCcccccccchHHHHHHHHHH-hC
Q 030566 67 GL--------------GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQIELFTHVPVLRNFVDHLK-SR 129 (175)
Q Consensus 67 ~l--------------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~--lliLDEP~~~~~~~~~~~~~~~l~~l~-~~ 129 (175)
.+ +..........+++ +|+..+++++.. +|+ +++|| | ..+.+... .+++++ +.
T Consensus 177 ~~~~~~~~d~~lldt~gl~~~~~~~~~eLS-kqr~~iaral~~--~P~e~lLvLD-p-----tsglD~~~-~~~~~~~~~ 246 (302)
T 3b9q_A 177 KRGKEEGYDVVLCDTSGRLHTNYSLMEELI-ACKKAVGKIVSG--APNEILLVLD-G-----NTGLNMLP-QAREFNEVV 246 (302)
T ss_dssp HHHHHTTCSEEEECCCCCSSCCHHHHHHHH-HHHHHHHTTSTT--CCSEEEEEEE-G-----GGGGGGHH-HHHHHHHHT
T ss_pred HHHHHcCCcchHHhcCCCCcchhHHHHHHH-HHHHHHHHhhcc--CCCeeEEEEe-C-----CCCcCHHH-HHHHHHHhc
Confidence 10 00111122345566 788899999999 999 99999 9 44444443 346665 45
Q ss_pred CCcEEEEEeeecc---------chhhhhcCCCceeEeccchhh
Q 030566 130 NFNVCAVYLLDSQ---------VCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 130 g~tvli~~l~~sH---------~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|.|+ +++|| .+..+......+.++..|..+
T Consensus 247 g~t~----iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 247 GITG----LILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp CCCE----EEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCCE----EEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 8999 99999 444455555677888877664
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-20 Score=156.34 Aligned_cols=75 Identities=12% Similarity=-0.131 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhhccCCC--CEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEe
Q 030566 80 HLEDNLDDWLAEELDNYLDD--DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p--~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
+..++++..|++++.. +| ++||||||+..........+.++|++++ +|.|| +++||+++.+ ..||+++++
T Consensus 297 SgGe~qrl~lA~~l~~--~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~v----i~itH~~~~~-~~~d~i~~l 368 (415)
T 4aby_A 297 SGGELSRVMLAVSTVL--GADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQV----LVVTHLAQIA-ARAHHHYKV 368 (415)
T ss_dssp CHHHHHHHHHHHHHHH--CCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEE----EEECSCHHHH-TTCSEEEEE
T ss_pred CHhHHHHHHHHHHHHh--CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEE----EEEeCcHHHH-hhcCeEEEE
Confidence 4458999999999999 99 9999999977666777778888999987 58999 9999999665 689999999
Q ss_pred ----ccchh
Q 030566 158 ----CCTHT 162 (175)
Q Consensus 158 ----~~~~~ 162 (175)
..|.+
T Consensus 369 ~k~~~~G~~ 377 (415)
T 4aby_A 369 EKQVEDGRT 377 (415)
T ss_dssp EEEEETTEE
T ss_pred EEeccCCce
Confidence 66543
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.80 E-value=9.4e-20 Score=164.71 Aligned_cols=90 Identities=17% Similarity=0.121 Sum_probs=70.5
Q ss_pred HHHHHhCCCC-CCchhhhHHHHHHHHHHHHHHHhhccCCC---CEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEE
Q 030566 61 DVMEELGLGP-NGGLIYCMEHLEDNLDDWLAEELDNYLDD---DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (175)
Q Consensus 61 ~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~p---~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~ 136 (175)
++++.+++.. ........-+..++||..|++++.. +| +++|||||+...+......+.++|++++++|.||
T Consensus 827 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TV--- 901 (972)
T 2r6f_A 827 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHR--RSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTV--- 901 (972)
T ss_dssp HHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSS--CCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE---
T ss_pred HHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhc--CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE---
Confidence 4566677654 2222222233459999999999997 65 9999999977777777778888999998889999
Q ss_pred EeeeccchhhhhcCCCceeEe
Q 030566 137 YLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 137 ~l~~sH~~~~~~~~~~~~~~~ 157 (175)
+++||+++++ ..||++++|
T Consensus 902 -IvisHdl~~i-~~aDrIivL 920 (972)
T 2r6f_A 902 -LVIEHNLDVI-KTADYIIDL 920 (972)
T ss_dssp -EEECCCHHHH-TTCSEEEEE
T ss_pred -EEEcCCHHHH-HhCCEEEEE
Confidence 9999999987 579999999
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.6e-20 Score=140.25 Aligned_cols=153 Identities=14% Similarity=0.055 Sum_probs=83.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-------ccceeEEeecCccc-ccCCCCccCCcchhccHHHHHHHhCCCCCC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-------VRRTMHIVNLDPAA-ENFDYPVAMDIRELISLEDVMEELGLGPNG 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-------~~G~I~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 72 (175)
+|++++|+||||||||||+++|+|...+ ..|.+++++.+... ..+.+.+ +.. .+...++.+++.+....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~--~~~-~~~~~~~~~~~~~~~~~ 100 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIA--QNR-GLDPDEVLKHIYVARAF 100 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHH--HHT-TSCHHHHHHTEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHH--HHc-CCCHHHHhhcEEEEecC
Confidence 5999999999999999999999996554 34467777654211 1111111 000 01123566665443322
Q ss_pred chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCccccc--------cc----chHHHHHHHHHH-hCCCcEEEEEee
Q 030566 73 GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELF--------TH----VPVLRNFVDHLK-SRNFNVCAVYLL 139 (175)
Q Consensus 73 ~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~--------~~----~~~~~~~l~~l~-~~g~tvli~~l~ 139 (175)
... ......+.....+.+.+....+|+++++|||+..... .. ...+...+.+++ +.|.|| ++
T Consensus 101 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tv----i~ 175 (231)
T 4a74_A 101 NSN-HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAV----FV 175 (231)
T ss_dssp SHH-HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEE----EE
T ss_pred ChH-HHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeE----EE
Confidence 111 1111112233333333311239999999999333111 00 113344555553 459999 99
Q ss_pred eccchhh----hhcCCCceeEeccch
Q 030566 140 DSQVCIR----FRTLPPCIVCFCCTH 161 (175)
Q Consensus 140 ~sH~~~~----~~~~~~~~~~~~~~~ 161 (175)
+||...+ +...+|+++.+..+.
T Consensus 176 vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 176 TNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp EEECC---------CCSEEEEEEECT
T ss_pred EeecccCcchhhHhhceEEEEEEecC
Confidence 9996665 889999999988753
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.7e-19 Score=145.09 Aligned_cols=147 Identities=14% Similarity=0.093 Sum_probs=97.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------------ccCCCCccCCcch-hccHHHHHHHh
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRE-LISLEDVMEEL 66 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------------~~~~~~~~~~~~~-~~~~~~~~~~~ 66 (175)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.+.+ +... ..+..++.+++
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~--q~~~~~~p~~tv~e~l 233 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVV--AEGDKAKAATVLSKAV 233 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEEC--CSSSSCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEE--ecccccChhhhHHHHH
Confidence 489999999999999999999999999999999999987532 1233333 2112 22222222222
Q ss_pred CC--------------CCCCchhhhHHHHHHHHHHHHHHHhhccCCCC--EEEEeCCCcccccccchHHHHHHHHHH-hC
Q 030566 67 GL--------------GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQIELFTHVPVLRNFVDHLK-SR 129 (175)
Q Consensus 67 ~l--------------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~--lliLDEP~~~~~~~~~~~~~~~l~~l~-~~ 129 (175)
.+ +..........+++ +++..+++++.. +|+ +++|| | ..+.+... .+++++ +.
T Consensus 234 ~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS-kqr~~iaral~~--~P~e~lLvLD-p-----ttglD~~~-~~~~~~~~~ 303 (359)
T 2og2_A 234 KRGKEEGYDVVLCDTSGRLHTNYSLMEELI-ACKKAVGKIVSG--APNEILLVLD-G-----NTGLNMLP-QAREFNEVV 303 (359)
T ss_dssp HHHHHTTCSEEEEECCCCSSCCHHHHHHHH-HHHHHHHHHSTT--CCSEEEEEEE-G-----GGGGGGHH-HHHHHHHHT
T ss_pred HHHHhCCCHHHHHHhcCCChhhhhHHHHHH-HHHHHHHHHHhc--CCCceEEEEc-C-----CCCCCHHH-HHHHHHHhc
Confidence 10 01111122335566 788999999999 999 99999 9 44444443 345665 45
Q ss_pred CCcEEEEEeeecc---------chhhhhcCCCceeEeccchhh
Q 030566 130 NFNVCAVYLLDSQ---------VCIRFRTLPPCIVCFCCTHTV 163 (175)
Q Consensus 130 g~tvli~~l~~sH---------~~~~~~~~~~~~~~~~~~~~~ 163 (175)
|.|+ +++|| .+..+......+.++..|..+
T Consensus 304 g~t~----iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 304 GITG----LILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp CCCE----EEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCeE----EEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 8999 99999 344444555677777777653
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-19 Score=164.67 Aligned_cols=99 Identities=20% Similarity=0.157 Sum_probs=73.2
Q ss_pred HHHHHhCCCCCC-chhhhHHHHHHHHHHHHHHHhhccCCC---CEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEE
Q 030566 61 DVMEELGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDD---DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (175)
Q Consensus 61 ~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~p---~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~ 136 (175)
++++.++++... ......-+..|+||..||+++.. +| +++|||||+..........+.++|++++++|.||
T Consensus 787 ~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~--~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TV--- 861 (916)
T 3pih_A 787 QVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRK--RDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTV--- 861 (916)
T ss_dssp HHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTS--CCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE---
T ss_pred HHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhh--CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEE---
Confidence 455556664321 11111223459999999999987 65 7999999977766777778888999998889999
Q ss_pred EeeeccchhhhhcCCCceeEe------ccchhhHHh
Q 030566 137 YLLDSQVCIRFRTLPPCIVCF------CCTHTVVQR 166 (175)
Q Consensus 137 ~l~~sH~~~~~~~~~~~~~~~------~~~~~~~~~ 166 (175)
+++||+++.+.. ||+++.| ..|..+-++
T Consensus 862 -IvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~G 895 (916)
T 3pih_A 862 -IVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATG 895 (916)
T ss_dssp -EEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEE
T ss_pred -EEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEc
Confidence 999999998755 9999999 566555443
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-20 Score=141.77 Aligned_cols=134 Identities=12% Similarity=0.121 Sum_probs=74.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCccC-CcchhccHHHHHHHhCCCCC--Cc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVAM-DIRELISLEDVMEELGLGPN--GG 73 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~--~~ 73 (175)
.++|+||||||||||+|+|+|+++ |.++|.+... ..+++.+.- +..+.+ +..+.+... ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~-----~~~~~~~~~~~~~ 71 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI-----FSSKFFTSKKLVG 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETTCCEEE-----EEETTCCCSSEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCcHHHHH-----HHhhcCCcccccc
Confidence 589999999999999999999985 4445543211 112222100 110111 011111110 01
Q ss_pred hhhhHHHHHHHHHHHHHHH-----hhccCCCCEEEEeC--CCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhh
Q 030566 74 LIYCMEHLEDNLDDWLAEE-----LDNYLDDDYLVFDC--PGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIR 146 (175)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~-----l~~~~~p~lliLDE--P~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~ 146 (175)
.....-+..++++..++++ +.. +|++++||| |.........+.+.++ +.+.+.|++++ .|.+|+...
T Consensus 72 ~~~~~lSgG~~qr~~la~aa~~~~l~~--~p~llilDEigp~~~ld~~~~~~l~~~---l~~~~~~~i~~-~H~~h~~~~ 145 (178)
T 1ye8_A 72 SYGVNVQYFEELAIPILERAYREAKKD--RRKVIIIDEIGKMELFSKKFRDLVRQI---MHDPNVNVVAT-IPIRDVHPL 145 (178)
T ss_dssp TEEECHHHHHHHHHHHHHHHHHHHHHC--TTCEEEECCCSTTGGGCHHHHHHHHHH---HTCTTSEEEEE-CCSSCCSHH
T ss_pred ccccCcCHHHHHHHHHHhhcccccccc--CCCEEEEeCCCCcccCCHHHHHHHHHH---HhcCCCeEEEE-EccCCCchH
Confidence 1111123348899999996 888 999999999 9443333322222222 33345556222 334578889
Q ss_pred hhcCCCc
Q 030566 147 FRTLPPC 153 (175)
Q Consensus 147 ~~~~~~~ 153 (175)
+..++++
T Consensus 146 ~~~i~~r 152 (178)
T 1ye8_A 146 VKEIRRL 152 (178)
T ss_dssp HHHHHTC
T ss_pred HHHHHhc
Confidence 8888876
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-19 Score=143.05 Aligned_cols=124 Identities=18% Similarity=0.135 Sum_probs=86.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccc-cceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~-~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+|++++|+||||||||||+++|+|+++|+ +|+|.++|.++. +.+. .....+.. ..+++..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~-----~~~~-~~~~~v~q----~~~gl~~--------- 84 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-----YVFK-HKKSIVNQ----REVGEDT--------- 84 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC-----SCCC-CSSSEEEE----EEBTTTB---------
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce-----eecC-CcceeeeH----HHhCCCH---------
Confidence 48999999999999999999999999998 999999987642 1110 00000000 0111111
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEecc
Q 030566 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
..++..+++++.. +|+++++|||. + .+.....++.. +.|.+| ++++|+.+ +...+++++.+..
T Consensus 85 ---~~l~~~la~aL~~--~p~illlDEp~-----D-~~~~~~~l~~~-~~g~~v----l~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 85 ---KSFADALRAALRE--DPDVIFVGEMR-----D-LETVETALRAA-ETGHLV----FGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp ---SCHHHHHHHHHHH--CCSEEEESCCC-----S-HHHHHHHHHHH-HTTCEE----EEEECCSS-HHHHHHHHHHTSC
T ss_pred ---HHHHHHHHHHHhh--CCCEEEeCCCC-----C-HHHHHHHHHHH-ccCCEE----EEEeCcch-HHHHHHHHhhhcC
Confidence 1125788999999 99999999994 1 12233345543 568999 99999976 6788898888876
Q ss_pred c
Q 030566 160 T 160 (175)
Q Consensus 160 ~ 160 (175)
.
T Consensus 148 ~ 148 (261)
T 2eyu_A 148 L 148 (261)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-20 Score=157.84 Aligned_cols=146 Identities=13% Similarity=0.039 Sum_probs=97.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccccc----CCCCccCCcchh-------ccHHHHHHHhCCCCCC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAEN----FDYPVAMDIREL-------ISLEDVMEELGLGPNG 72 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~----~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~ 72 (175)
+++|+||||||||||+|+|+|+.+|++|+|.++|.+..... ....+.++..++ ....++++.+++....
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~ 150 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYD 150 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCccC
Confidence 99999999999999999999999999999999886532110 011112222222 2256677777665432
Q ss_pred chhhhHHHHH--HHHHHHHHHHhhc--------cCCCCEEEEeCCCcccccccchHHHHHHHHHH-----hCC----CcE
Q 030566 73 GLIYCMEHLE--DNLDDWLAEELDN--------YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-----SRN----FNV 133 (175)
Q Consensus 73 ~~~~~~~~~~--~~~~~~l~~~l~~--------~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-----~~g----~tv 133 (175)
... . -+.+ ++++..+++++.. ..+|+++++|||....+...++.+.+.++++. +.| .++
T Consensus 151 ~~~-~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~ii 228 (413)
T 1tq4_A 151 FFI-I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIF 228 (413)
T ss_dssp EEE-E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEE
T ss_pred CeE-E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 111 1 1223 6788888887776 24889999999955555555666777777763 332 446
Q ss_pred EEEEeeeccchhh--hhcCCCcee
Q 030566 134 CAVYLLDSQVCIR--FRTLPPCIV 155 (175)
Q Consensus 134 li~~l~~sH~~~~--~~~~~~~~~ 155 (175)
+++||.+++ ++++++++.
T Consensus 229 ----liSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 229 ----LLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp ----ECCTTCTTSTTHHHHHHHHH
T ss_pred ----EEecCcCCccCHHHHHHHHH
Confidence 889999987 888888663
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.76 E-value=7e-18 Score=136.93 Aligned_cols=75 Identities=7% Similarity=-0.092 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhhc--cCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCce--eE
Q 030566 81 LEDNLDDWLAEELDN--YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCI--VC 156 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~--~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~--~~ 156 (175)
..++++..++++++. +.+|++++||||+...+....+.+.+++++++ ++.+| +++||+. ++.+.+|++ ++
T Consensus 222 ~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~v----i~~tH~~-~~~~~~d~~~~v~ 295 (322)
T 1e69_A 222 GGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQF----IVITHNK-IVMEAADLLHGVT 295 (322)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEE----EEECCCT-TGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeE----EEEECCH-HHHhhCceEEEEE
Confidence 348888999998762 12899999999966666666777888888874 57889 9999995 567788875 55
Q ss_pred eccch
Q 030566 157 FCCTH 161 (175)
Q Consensus 157 ~~~~~ 161 (175)
+..+.
T Consensus 296 ~~~g~ 300 (322)
T 1e69_A 296 MVNGV 300 (322)
T ss_dssp ESSSC
T ss_pred EeCCE
Confidence 65543
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-18 Score=143.20 Aligned_cols=125 Identities=14% Similarity=0.054 Sum_probs=82.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccc-cceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~-~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+|++++|+||||||||||+++|+|+++|+ +|.|...+.++.. ...... ....+. ......
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~-~~~~~~--~~v~q~---------~~~~~~------- 182 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEF-VHESKK--CLVNQR---------EVHRDT------- 182 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCS-CCCCSS--SEEEEE---------EBTTTB-------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHh-hhhccc--cceeee---------eecccc-------
Confidence 47799999999999999999999999987 4555544433211 100000 000000 000000
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEecc
Q 030566 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
......+++++.+ +|+++++|||...+.. +.+.+.++.|.+| +.++|..+.+ ..++|++.+..
T Consensus 183 ---~~~~~~La~aL~~--~PdvillDEp~d~e~~-------~~~~~~~~~G~~v----l~t~H~~~~~-~~~dRli~l~~ 245 (356)
T 3jvv_A 183 ---LGFSEALRSALRE--DPDIILVGEMRDLETI-------RLALTAAETGHLV----FGTLHTTSAA-KTIDRVVDVFP 245 (356)
T ss_dssp ---SCHHHHHHHHTTS--CCSEEEESCCCSHHHH-------HHHHHHHHTTCEE----EEEESCSSHH-HHHHHHHHTSC
T ss_pred ---CCHHHHHHHHhhh--CcCEEecCCCCCHHHH-------HHHHHHHhcCCEE----EEEEccChHH-HHHHHHhhhcC
Confidence 0111278899999 9999999999432222 2555666779999 9999999877 78899998876
Q ss_pred ch
Q 030566 160 TH 161 (175)
Q Consensus 160 ~~ 161 (175)
+.
T Consensus 246 ~~ 247 (356)
T 3jvv_A 246 AE 247 (356)
T ss_dssp HH
T ss_pred cc
Confidence 54
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-18 Score=150.00 Aligned_cols=145 Identities=13% Similarity=0.138 Sum_probs=93.7
Q ss_pred CCeEEEEECCCCCcHHHHHHH--HHccCccccceeEEeecCccc------ccCCCCccCCcchh---ccHHHHHHHhCCC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSS--LYRHCETVRRTMHIVNLDPAA------ENFDYPVAMDIREL---ISLEDVMEELGLG 69 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~--i~gl~~~~~G~I~i~g~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~~~l~ 69 (175)
+|++++|+||||||||||+++ ++|+.+|++|.|+++|.+... +.+++.+ +.... +. .+...
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~--q~~~~~~~l~------~~~~~ 109 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDL--AKLVDEGKLF------ILDAS 109 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCH--HHHHHTTSEE------EEECC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCh--HHhhccCcEE------EEecC
Confidence 599999999999999999999 789999999999999987421 2334433 11100 00 00000
Q ss_pred C--CCchhhhHHHHHHHHHHHHHHHhh-ccCCCCEEEEeCCCccc-----ccccchHHHHHHHHHHhCCCcEEEEEeeec
Q 030566 70 P--NGGLIYCMEHLEDNLDDWLAEELD-NYLDDDYLVFDCPGQIE-----LFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (175)
Q Consensus 70 ~--~~~~~~~~~~~~~~~~~~l~~~l~-~~~~p~lliLDEP~~~~-----~~~~~~~~~~~l~~l~~~g~tvli~~l~~s 141 (175)
. ........-.+.... ..+...+. . +|+++++|||+... +...+..+.++++.++++|.|| +++|
T Consensus 110 ~~~~~~~~l~~~~l~~~~-~~~~~~LS~g--~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tv----l~it 182 (525)
T 1tf7_A 110 PDPEGQEVVGGFDLSALI-ERINYAIQKY--RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATT----VMTT 182 (525)
T ss_dssp CCSSCCSCCSSHHHHHHH-HHHHHHHHHH--TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEE----EEEE
T ss_pred cccchhhhhcccCHHHHH-HHHHHHHHHc--CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEE----EEEe
Confidence 0 000000011122222 22233443 4 89999999994321 2344567778899988789999 9999
Q ss_pred cchhhh---------hcCCCceeEeccc
Q 030566 142 QVCIRF---------RTLPPCIVCFCCT 160 (175)
Q Consensus 142 H~~~~~---------~~~~~~~~~~~~~ 160 (175)
|+++++ +.+||++++|..+
T Consensus 183 H~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 183 ERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp ECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred cCCCCccccccccceeeeeeEEEEEEEE
Confidence 999985 4559999999873
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-17 Score=133.53 Aligned_cols=129 Identities=15% Similarity=0.108 Sum_probs=84.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------------ccCCCCccCCcchhccHHHHHHHh--
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRELISLEDVMEEL-- 66 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~-- 66 (175)
|++++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.+.+ +.....+...+.+++
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~--q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQ--GPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEEC--CCTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEE--eCCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999987532 1233333 211111211121111
Q ss_pred -----------CCCCCC-chhhhHHHHHHHHHHHHHHHhhccCCCC--EEEEeCCCcccccccchHHHHHHHHHHh-CCC
Q 030566 67 -----------GLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQIELFTHVPVLRNFVDHLKS-RNF 131 (175)
Q Consensus 67 -----------~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~p~--lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~ 131 (175)
+..... .......+++ +++..++|++.. +|+ ++.||..+...+.+ .++++++ .+.
T Consensus 180 ~~~~~~d~~llDt~G~~~~~~~~~~eLs-~~r~~iaRal~~--~P~~~lLvLDa~t~~~~~~-------~~~~~~~~~~~ 249 (304)
T 1rj9_A 180 MKARGYDLLFVDTAGRLHTKHNLMEELK-KVKRAIAKADPE--EPKEVWLVLDAVTGQNGLE-------QAKKFHEAVGL 249 (304)
T ss_dssp HHHHTCSEEEECCCCCCTTCHHHHHHHH-HHHHHHHHHCTT--CCSEEEEEEETTBCTHHHH-------HHHHHHHHHCC
T ss_pred HHhCCCCEEEecCCCCCCchHHHHHHHH-HHHHHHHHhhcC--CCCeEEEEEcHHHHHHHHH-------HHHHHHHHcCC
Confidence 111111 1111223444 677889999999 999 78899554444444 6777754 489
Q ss_pred cEEEEEeeeccchhh
Q 030566 132 NVCAVYLLDSQVCIR 146 (175)
Q Consensus 132 tvli~~l~~sH~~~~ 146 (175)
|+ +++||+.+.
T Consensus 250 t~----iivTh~d~~ 260 (304)
T 1rj9_A 250 TG----VIVTKLDGT 260 (304)
T ss_dssp SE----EEEECTTSS
T ss_pred cE----EEEECCccc
Confidence 99 999998543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.9e-18 Score=145.62 Aligned_cols=148 Identities=14% Similarity=0.062 Sum_probs=99.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccce--eEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRT--MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCM 78 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~--I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (175)
+|++++|+|+||||||||+++++|..++. |+ +.+.+++...+-......+ .+...++. ..++..........
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~~~l~~~~~~~----g~~~~~~~-~~g~~~~~~~~p~~ 353 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESRAQLLRNAYSW----GMDFEEME-RQNLLKIVCAYPES 353 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCHHHHHHHHHTT----SCCHHHHH-HTTSEEECCCCGGG
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCHHHHHHHHHHc----CCCHHHHH-hCCCEEEEEecccc
Confidence 59999999999999999999999999885 65 4555554321000000000 00111211 12111111111111
Q ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccc-----cchHHHHHHHHHHhCCCcEEEEEeeeccch---------
Q 030566 79 EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFT-----HVPVLRNFVDHLKSRNFNVCAVYLLDSQVC--------- 144 (175)
Q Consensus 79 ~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~-----~~~~~~~~l~~l~~~g~tvli~~l~~sH~~--------- 144 (175)
-+..++++..+++++.. +|+++++| |....+.. .+..+.++++.++++|.|| +++||+.
T Consensus 354 LS~g~~q~~~~a~~l~~--~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tv----ilvsh~~~~~~~~~~~ 426 (525)
T 1tf7_A 354 AGLEDHLQIIKSEINDF--KPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITG----LFTNTSDQFMGAHSIT 426 (525)
T ss_dssp SCHHHHHHHHHHHHHTT--CCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEE----EEEEECSSSSCCCSSC
T ss_pred CCHHHHHHHHHHHHHhh--CCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEE----EEEECcccccCccccc
Confidence 23458899999999988 99999999 94444444 5666777888888889999 9999999
Q ss_pred -hhhhcCCCceeEeccch
Q 030566 145 -IRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 145 -~~~~~~~~~~~~~~~~~ 161 (175)
..+..+||++++|..+.
T Consensus 427 ~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 427 DSHISTITDTIILLQYVE 444 (525)
T ss_dssp SSCCTTTCSEEEEEEEEE
T ss_pred CcccceeeeEEEEEEEEE
Confidence 78889999999998765
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=138.23 Aligned_cols=75 Identities=7% Similarity=-0.142 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhh------ccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCcee
Q 030566 82 EDNLDDWLAEELD------NYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIV 155 (175)
Q Consensus 82 ~~~~~~~l~~~l~------~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~ 155 (175)
.++|+..+++++. . +|++++||||+...+....+.+.+++++++++|.|| +++||+++. ...+|+++
T Consensus 283 Ge~qr~~la~al~~~~~~~~--~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tv----i~itH~~~~-~~~~d~~~ 355 (365)
T 3qf7_A 283 GERALISISLAMSLAEVASG--RLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVI----VFITHDREF-SEAFDRKL 355 (365)
T ss_dssp HHHHHHHHHHHHHHHHHTTT--TCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEE----EEEESCHHH-HTTCSCEE
T ss_pred HHHHHHHHHHHHHhhhcccC--CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEE----EEEecchHH-HHhCCEEE
Confidence 3888899888877 6 999999999966666667777888899988789999 999999988 67899999
Q ss_pred Eeccchhh
Q 030566 156 CFCCTHTV 163 (175)
Q Consensus 156 ~~~~~~~~ 163 (175)
++..|..+
T Consensus 356 ~l~~G~i~ 363 (365)
T 3qf7_A 356 RITGGVVV 363 (365)
T ss_dssp EEETTEEC
T ss_pred EEECCEEE
Confidence 99988654
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-18 Score=136.90 Aligned_cols=153 Identities=13% Similarity=0.104 Sum_probs=87.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccc-eeEEeecCcccc----cC-CC--CccCCcchhcc--------HHHHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAE----NF-DY--PVAMDIRELIS--------LEDVME 64 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G-~I~i~g~~~~~~----~~-~~--~~~~~~~~~~~--------~~~~~~ 64 (175)
+|++++|+||||||||||+++|+|...|++| .|.+.+.+.... .. .. ...++..+.+. .....+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 113 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFD 113 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHH
Confidence 5999999999999999999999999999878 786655432111 00 00 00001100110 111112
Q ss_pred Hh----CCCCCCc-hhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCccc------cc-ccchHHHHHHHHHHh-CCC
Q 030566 65 EL----GLGPNGG-LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIE------LF-THVPVLRNFVDHLKS-RNF 131 (175)
Q Consensus 65 ~~----~l~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~------~~-~~~~~~~~~l~~l~~-~g~ 131 (175)
.+ .+..... .......+ +++.. ++++.. +|+++++|||.... .. .....+.+.|+++++ .|.
T Consensus 114 ~~l~~~~l~i~~~~~~~~~~~l--~~~~~-a~~~~~--~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~ 188 (296)
T 1cr0_A 114 ELFGNDTFHLYDSFAEAETDRL--LAKLA-YMRSGL--GCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGV 188 (296)
T ss_dssp HHHSSSCEEEECCCCSCCHHHH--HHHHH-HHHHTT--CCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCC
T ss_pred HHhccCCEEEECCCCCCCHHHH--HHHHH-HHHHhc--CCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 11 1110000 01111222 22222 556777 99999999994411 11 223446667777754 489
Q ss_pred cEEEEEeeeccch--h--------------------hhhcCCCceeEeccchh
Q 030566 132 NVCAVYLLDSQVC--I--------------------RFRTLPPCIVCFCCTHT 162 (175)
Q Consensus 132 tvli~~l~~sH~~--~--------------------~~~~~~~~~~~~~~~~~ 162 (175)
|| +++||+. + .++..||+++++..+..
T Consensus 189 ~v----i~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 189 VL----VVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp EE----EEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred eE----EEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 99 9999995 5 78889999999987764
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-17 Score=124.89 Aligned_cols=151 Identities=13% Similarity=0.166 Sum_probs=86.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccc-------cCCCCccCCcchhcc-HHHHHHHhCCCCCC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDYPVAMDIRELIS-LEDVMEELGLGPNG 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~ 72 (175)
+|++++|+||||||||||++.+++...+.+|.+.+.+.+.... ..++.+.......+. ......... ....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 100 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKE-DQWS 100 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC-----CTTB
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccC-ceee
Confidence 5899999999999999999999998888889998877543211 112111000000000 000000000 0000
Q ss_pred chhhhHHHHHHHHHHHHHHHhhccCCCC--EEEEeCCCccc--ccccchHHHHHHHHHH-hCCCcEEEEEeeeccch---
Q 030566 73 GLIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQIE--LFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQVC--- 144 (175)
Q Consensus 73 ~~~~~~~~~~~~~~~~l~~~l~~~~~p~--lliLDEP~~~~--~~~~~~~~~~~l~~l~-~~g~tvli~~l~~sH~~--- 144 (175)
... .+..+.++...+..... +|+ ++++|||+... .......+...+++++ +.|.|| ++++|+.
T Consensus 101 ~~~---~~~~~~~~~~~~~~~~~--~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~v----i~~~h~~~~~ 171 (235)
T 2w0m_A 101 LVN---LTPEELVNKVIEAKQKL--GYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTI----YATSQYAITT 171 (235)
T ss_dssp CSS---CCHHHHHHHHHHHHHHH--CSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEE----EEEEC-----
T ss_pred ecC---CCHHHHHHHHHHHHHhh--CCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeE----EEEeccCccc
Confidence 000 02223333333334445 899 99999994332 2333455666777764 568899 9999999
Q ss_pred -----hhhhcCCCceeEeccch
Q 030566 145 -----IRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 145 -----~~~~~~~~~~~~~~~~~ 161 (175)
..++.+||+++++....
T Consensus 172 ~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 172 SQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp ------CHHHHCSEEEEEEEEE
T ss_pred ccccccchheeeeEEEEEEEEe
Confidence 55889999999998653
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-19 Score=134.59 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=34.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
|++++|+||||||||||+++|+|+++ ++| |.++|++.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYT 37 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEEC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEec
Confidence 78999999999999999999999999 999 99988765
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=7.5e-17 Score=147.78 Aligned_cols=133 Identities=14% Similarity=0.099 Sum_probs=82.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCcccc--ceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHH
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVR--RTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~--G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
|++++|+||||||||||+|++ |++.+.. |. .-++.. ..+++.+.+. ..++....... ...
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~-----~Vpq~~-----~~l~v~d~I~-----~rig~~d~~~~--~~s 850 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGC-----YVPAEV-----CRLTPIDRVF-----TRLGASDRIMS--GES 850 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTC-----CEESSE-----EEECCCSBEE-----EECC-----------C
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHHHHhheeE-----EeccCc-----CCCCHHHHHH-----HHcCCHHHHhh--chh
Confidence 899999999999999999999 9987521 20 001110 0011111111 01121111100 111
Q ss_pred HHH-HHHHHHHHHHhhccCCCCEEEEeCCCcccc-cccchHHHHHHHHHHhC-CCcEEEEEeeeccchhhhhcCCCceeE
Q 030566 80 HLE-DNLDDWLAEELDNYLDDDYLVFDCPGQIEL-FTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRFRTLPPCIVC 156 (175)
Q Consensus 80 ~~~-~~~~~~l~~~l~~~~~p~lliLDEP~~~~~-~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~ 156 (175)
.++ +..+..++++++. +|+++|||||++... .++...++.+++.++++ |.++ +++||+.+.+..+++++.+
T Consensus 851 tf~~em~~~a~al~la~--~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~v----l~~TH~~el~~~~~d~~~v 924 (1022)
T 2o8b_B 851 TFFVELSETASILMHAT--AHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRT----LFSTHYHSLVEDYSQNVAV 924 (1022)
T ss_dssp HHHHHHHHHHHHHHHCC--TTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEE----EEECCCHHHHHHTSSCSSE
T ss_pred hhHHHHHHHHHHHHhCC--CCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEE----EEEeCCHHHHHHhCCccee
Confidence 122 3334666777888 999999999944433 33345567788888766 8999 9999999999999998777
Q ss_pred ec
Q 030566 157 FC 158 (175)
Q Consensus 157 ~~ 158 (175)
+.
T Consensus 925 ~~ 926 (1022)
T 2o8b_B 925 RL 926 (1022)
T ss_dssp EE
T ss_pred ec
Confidence 64
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.2e-17 Score=125.43 Aligned_cols=122 Identities=13% Similarity=0.107 Sum_probs=76.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc--ccceeEEeecCccc---ccCCCCccCCcchhccHHHH----HHHhCCCCC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA---ENFDYPVAMDIRELISLEDV----MEELGLGPN 71 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~--~~G~I~i~g~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~ 71 (175)
+|++++|+||||||||||+|+|+|+.+| ..|.|.+.+.+++. ..++|.+ +..+.|....+ .++..+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~f--q~~~~f~~~~~~~~f~E~~~~~~~ 92 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFF--VNHDEFKEMISRDAFLEHAEVFGN 92 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEE--CCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEE--CCHHHHHHHHhcCHHHHHHHHHhc
Confidence 4999999999999999999999999986 78999998877643 2345554 33344433333 232222111
Q ss_pred CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhc
Q 030566 72 GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRT 149 (175)
Q Consensus 72 ~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~ 149 (175)
. ...+ .+. ...+.. .++++||| .+..+...+++.+ .++.|| +++||+++++..
T Consensus 93 ~-yg~~----~~~-----v~~~l~--~G~illLD-----LD~~~~~~i~~~l----~~~~tI----~i~th~~~~l~~ 145 (219)
T 1s96_A 93 Y-YGTS----REA-----IEQVLA--TGVDVFLD-----IDWQGAQQIRQKM----PHARSI----FILPPSKIELDR 145 (219)
T ss_dssp E-EEEE----HHH-----HHHHHT--TTCEEEEE-----CCHHHHHHHHHHC----TTCEEE----EEECSSHHHHHH
T ss_pred c-CCCC----HHH-----HHHHHh--cCCeEEEE-----ECHHHHHHHHHHc----cCCEEE----EEECCCHHHHHH
Confidence 1 0111 011 122334 68999999 2233233333232 257788 999999998876
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-16 Score=144.78 Aligned_cols=132 Identities=14% Similarity=0.070 Sum_probs=77.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHH--------HccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSL--------YRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNG 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i--------~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 72 (175)
+|++++|+||||||||||+|++ .|.+.|.++.. +. ... ..... ++.....
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-~~----------~~d--~i~~~---------ig~~d~l 718 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-VS----------IVD--CILAR---------VGAGDSQ 718 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-EE----------CCS--EEEEE---------CC-----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-ch----------HHH--HHHHh---------cCchhhH
Confidence 4899999999999999999999 66555544321 00 000 01001 1111111
Q ss_pred chhhhHHHHHHHHHHHHHHHh--hccCCCCEEEEeCCCccccc-ccchHHHHHHHHHHh-CCCcEEEEEeeeccchhhhh
Q 030566 73 GLIYCMEHLEDNLDDWLAEEL--DNYLDDDYLVFDCPGQIELF-THVPVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFR 148 (175)
Q Consensus 73 ~~~~~~~~~~~~~~~~l~~~l--~~~~~p~lliLDEP~~~~~~-~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~ 148 (175)
.. ....++ ..+..+++.+ +. +|+++|||||++.... .+....+.+++.+++ .|.++ +++||+.+ +.
T Consensus 719 ~~--~lStf~-~e~~~~a~il~~a~--~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~v----l~aTH~~e-l~ 788 (934)
T 3thx_A 719 LK--GVSTFM-AEMLETASILRSAT--KDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFC----MFATHFHE-LT 788 (934)
T ss_dssp ------CHHH-HHHHHHHHHHHHCC--TTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEE----EEEESCGG-GG
T ss_pred HH--hHhhhH-HHHHHHHHHHHhcc--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEE----EEEcCcHH-HH
Confidence 00 111122 1122234434 55 9999999999444433 333334677888875 48999 99999955 55
Q ss_pred cCCCceeEeccchhhH
Q 030566 149 TLPPCIVCFCCTHTVV 164 (175)
Q Consensus 149 ~~~~~~~~~~~~~~~~ 164 (175)
.+++++..+.+++...
T Consensus 789 ~lad~~~~v~ng~v~~ 804 (934)
T 3thx_A 789 ALANQIPTVNNLHVTA 804 (934)
T ss_dssp GGGGTCTTEEEEEEEE
T ss_pred HHhcccceeEeeEEEE
Confidence 7888887777766543
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-18 Score=133.06 Aligned_cols=142 Identities=13% Similarity=0.035 Sum_probs=82.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCccCCcchhcc--------------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPVAMDIRELIS-------------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~~~~~~~~~~-------------- 58 (175)
+|++++|+||||||||||+|+|+|++ | |+|.+ |.+... ..+++.+ +....+.
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~l~~~~~ 95 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYF--IDKTIFEDKLKNEDFLEYDNY 95 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEE--CCHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEE--CCHHHHHHhhhccchhhhhhc
Confidence 59999999999999999999999999 5 99998 665321 1233332 1111111
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHH-----HHHhhccCCCCEEEEeCCCcccccccchHHHHHHHH
Q 030566 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWL-----AEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 59 --------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l-----~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
..++.+.+.-.... .....-+..++|+..+ ++++.. +|++++||||...........+.+.+.+
T Consensus 96 ~~~~~g~~~~~i~~~l~~~~~~-il~~~lsggq~qR~~i~~~~~~~~ll~--~~~~~~Lde~~~~~d~~~~~~i~~~l~~ 172 (218)
T 1z6g_A 96 ANNFYGTLKSEYDKAKEQNKIC-LFEMNINGVKQLKKSTHIKNALYIFIK--PPSTDVLLSRLLTRNTENQEQIQKRMEQ 172 (218)
T ss_dssp TTEEEEEEHHHHHHHHHTTCEE-EEEECHHHHHHHTTCSSCCSCEEEEEE--CSCHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred ccccCCCcHHHHHHHHhCCCcE-EEEecHHHHHHHHHHhcCCCcEEEEEe--CcCHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 01111111110000 0000112346777766 445666 8999999999333333333344444544
Q ss_pred HHh-------CCCcEEEEEeeeccchhhhhcCCCcee
Q 030566 126 LKS-------RNFNVCAVYLLDSQVCIRFRTLPPCIV 155 (175)
Q Consensus 126 l~~-------~g~tvli~~l~~sH~~~~~~~~~~~~~ 155 (175)
..+ .+.+. ++++|+++++...+++++
T Consensus 173 ~~~~~~~~h~~~~d~----iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 173 LNIELHEANLLNFNL----SIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp HHHHHHHHTTSCCSE----EEECSSHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCCE----EEECCCHHHHHHHHHHHH
Confidence 322 45677 788899998888777554
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-15 Score=126.73 Aligned_cols=121 Identities=17% Similarity=0.074 Sum_probs=81.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccc-cceeEEeecCccc---ccCCCCccCCcchhccHHHHHHHhCCCCCCchhh
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAA---ENFDYPVAMDIRELISLEDVMEELGLGPNGGLIY 76 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~-~G~I~i~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 76 (175)
+|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++.. ...++.+ +. .++....
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~--Q~-----------~~g~~~~----- 196 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVN--QR-----------EVGEDTK----- 196 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEE--EE-----------EBTTTBS-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEE--ee-----------ecCCCHH-----
Confidence 48999999999999999999999999998 8999887765421 0111111 00 0111110
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeE
Q 030566 77 CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVC 156 (175)
Q Consensus 77 ~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~ 156 (175)
. ++..++.++.. +|+++++|||. + .+.+...++.. ..|.+| +.++|..+ +.+.+++++.
T Consensus 197 ---~----~~~~l~~~L~~--~pd~illdE~~-----d-~e~~~~~l~~~-~~g~~v----i~t~H~~~-~~~~~~rl~~ 255 (372)
T 2ewv_A 197 ---S----FADALRAALRE--DPDVIFVGEMR-----D-LETVETALRAA-ETGHLV----FGTLHTNT-AIDTIHRIVD 255 (372)
T ss_dssp ---C----SHHHHHHHTTS--CCSEEEESCCC-----S-HHHHHHHHHHH-TTTCEE----EECCCCCS-HHHHHHHHHH
T ss_pred ---H----HHHHHHHHhhh--CcCEEEECCCC-----C-HHHHHHHHHHH-hcCCEE----EEEECcch-HHHHHHHHHH
Confidence 1 13467788888 99999999993 1 11223345543 568888 88999844 8888888877
Q ss_pred eccc
Q 030566 157 FCCT 160 (175)
Q Consensus 157 ~~~~ 160 (175)
+...
T Consensus 256 l~~~ 259 (372)
T 2ewv_A 256 IFPL 259 (372)
T ss_dssp TSCT
T ss_pred hcCc
Confidence 6543
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-16 Score=124.70 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=23.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
.++|+||||||||||+|+|+|+.+|++|+|.++|.++
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i 40 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKI 40 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCccc
Confidence 5899999999999999999999999999999998764
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-15 Score=109.61 Aligned_cols=87 Identities=17% Similarity=0.188 Sum_probs=64.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccc--eeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCM 78 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G--~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (175)
+|+.++|+||||||||||++++++...+ +| .+++++.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~----------------------------------- 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT----------------------------------- 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-----------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-----------------------------------
Confidence 4889999999999999999999999877 57 555554432111
Q ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCc-EEEEEeeeccc
Q 030566 79 EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFN-VCAVYLLDSQV 143 (175)
Q Consensus 79 ~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~t-vli~~l~~sH~ 143 (175)
++.. +|+++++|||....... .+.+..++.++.++|.+ + +++||.
T Consensus 79 -------------~~~~--~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~i----iits~~ 124 (149)
T 2kjq_A 79 -------------DAAF--EAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFL----LLGSEY 124 (149)
T ss_dssp -------------GGGG--GCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEE----EEEESS
T ss_pred -------------HHHh--CCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEE----EEECCC
Confidence 1245 89999999995433322 55666788887777888 7 778884
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=8.8e-16 Score=137.12 Aligned_cols=123 Identities=15% Similarity=0.103 Sum_probs=69.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc-cccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHH
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~-~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (175)
|++++|+||||||||||+|+|+|+.. ++.|.+. +.....+++.+ +....+ ++.+++..+..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----pa~~~~i~~v~--~i~~~~---~~~d~l~~g~S--------- 637 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----PAEEAHLPLFD--GIYTRI---GASDDLAGGKS--------- 637 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----SSSEEEECCCS--EEEEEC---CC------CCS---------
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----ehhccceeeHH--HhhccC---CHHHHHHhccc---------
Confidence 78999999999999999999999875 6778653 11122233332 111111 11122222111
Q ss_pred HHHHHHHHHHHHh--hccCCCCEEEEeCCCcc-cccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhh
Q 030566 81 LEDNLDDWLAEEL--DNYLDDDYLVFDCPGQI-ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFR 148 (175)
Q Consensus 81 ~~~~~~~~l~~~l--~~~~~p~lliLDEP~~~-~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~ 148 (175)
..+.++..+++++ +. +|+++|||||++. .-.+.....+.+++.+++.|.|+ +++||+.+...
T Consensus 638 ~~~~e~~~la~il~~a~--~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~v----l~~TH~~~l~~ 702 (765)
T 1ewq_A 638 TFMVEMEEVALILKEAT--ENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYT----LFATHYFELTA 702 (765)
T ss_dssp HHHHHHHHHHHHHHHCC--TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEE----EEECCCHHHHT
T ss_pred HHHHHHHHHHHHHHhcc--CCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEE----EEEeCCHHHHH
Confidence 1123334455555 56 9999999999322 00111111123455555568899 99999987653
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=111.27 Aligned_cols=140 Identities=15% Similarity=0.152 Sum_probs=74.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc--cCcc-----ccceeEEeecCccc--------ccCCCCccCCcchhccHHHHHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYR--HCET-----VRRTMHIVNLDPAA--------ENFDYPVAMDIRELISLEDVMEE 65 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~g--l~~~-----~~G~I~i~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 65 (175)
+|++++|+||||||||||++.+++ +.+| ..|.+++++.+... +..++ ...+++++
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~ 92 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL----------SGSDVLDN 92 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTC----------CHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCC----------CHHHHhhC
Confidence 489999999999999999999999 5655 56778888765210 01111 11223444
Q ss_pred hCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccc-------c-----chHHHHHHHHHH-hCCCc
Q 030566 66 LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFT-------H-----VPVLRNFVDHLK-SRNFN 132 (175)
Q Consensus 66 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~-------~-----~~~~~~~l~~l~-~~g~t 132 (175)
+.+..... .....+......+..-.. +|+++++|||+...... . ...+...+++++ +.|.|
T Consensus 93 ~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~t 166 (243)
T 1n0w_A 93 VAYARAFN----TDHQTQLLYQASAMMVES--RYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVA 166 (243)
T ss_dssp EEEEECCS----HHHHHHHHHHHHHHHHHS--CEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_pred eEEEecCC----HHHHHHHHHHHHHHHhcC--CceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 32211110 111111111111111124 89999999994332221 1 122333344443 45899
Q ss_pred EEEEEeeeccchhhhhc-------------------CCCceeEeccc
Q 030566 133 VCAVYLLDSQVCIRFRT-------------------LPPCIVCFCCT 160 (175)
Q Consensus 133 vli~~l~~sH~~~~~~~-------------------~~~~~~~~~~~ 160 (175)
| ++++|...+... .||+++++..+
T Consensus 167 v----i~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 167 V----VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp E----EEEC-------------------------CCTTCEEEEEEEC
T ss_pred E----EEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 9 999997766544 78888888764
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.2e-15 Score=120.59 Aligned_cols=130 Identities=13% Similarity=0.096 Sum_probs=79.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----------ccCCCCccCCcchhccHHHHHHHhCCC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDYPVAMDIRELISLEDVMEELGLG 69 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (175)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.+... +..+.....+.....+...+.+++.++
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999987532 122211111222222233333332111
Q ss_pred C----C------CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH-hCCCcEEEEEe
Q 030566 70 P----N------GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYL 138 (175)
Q Consensus 70 ~----~------~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-~~g~tvli~~l 138 (175)
. . .........+.... ..+++++.. ++++++||.++..+..+ .++.++ ..+.|+ +
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL-~~i~ral~~--de~llvLDa~t~~~~~~-------~~~~~~~~~~it~----i 273 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEM-KKIARVTKP--NLVIFVGDALAGNAIVE-------QARQFNEAVKIDG----I 273 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHH-HHHHHHHCC--SEEEEEEEGGGTTHHHH-------HHHHHHHHSCCCE----E
T ss_pred HhccchhhHHhhccchhHHHHHHHHH-HHHHHHhcC--CCCEEEEecHHHHHHHH-------HHHHHHHhcCCCE----E
Confidence 0 0 00000001111111 125667777 99999999885555554 677775 458999 9
Q ss_pred eeccch
Q 030566 139 LDSQVC 144 (175)
Q Consensus 139 ~~sH~~ 144 (175)
++||.-
T Consensus 274 ilTKlD 279 (328)
T 3e70_C 274 ILTKLD 279 (328)
T ss_dssp EEECGG
T ss_pred EEeCcC
Confidence 999954
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=7.2e-16 Score=139.74 Aligned_cols=129 Identities=9% Similarity=0.030 Sum_probs=68.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-ccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+|++++|+||||||||||+|+++++... ..|.. + +.......... ..+....+.+.+..+ ....
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~-v---pa~~~~i~~~d-----~i~~~ig~~d~l~~~------~stf 736 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALITIMAQIGSY-V---PAEEATIGIVD-----GIFTRMGAADNIYKG------RSTF 736 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC-B---SSSEEEEECCS-----EEEEEC----------------CCH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc-c---cchhhhhhHHH-----HHHHhCChHHHHHHh------HHHh
Confidence 4899999999999999999999865321 11110 0 00000011110 011100111111111 1111
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccc-cchHHHHHHHHHHh-CCCcEEEEEeeeccchhhhhcCCC
Q 030566 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFT-HVPVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPP 152 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~-~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~ 152 (175)
...+++...+.++ +. +|+++|||||+...... .....+.+++.+++ .|.|+ +++||+++.+ ++++
T Consensus 737 s~em~~~~~il~~-a~--~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tv----l~vTH~~el~-~l~~ 803 (918)
T 3thx_B 737 MEELTDTAEIIRK-AT--SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLT----LFVTHYPPVC-ELEK 803 (918)
T ss_dssp HHHHHHHHHHHHH-CC--TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEE----EEECSCGGGG-GHHH
T ss_pred hHHHHHHHHHHHh-cc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeE----EEEeCcHHHH-HHHh
Confidence 1224444444444 55 99999999994443333 33334477888754 68999 9999997655 4443
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-15 Score=125.47 Aligned_cols=136 Identities=15% Similarity=0.056 Sum_probs=74.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC--cccc----ce-eEEeecCcc-cccCCCCccCCcchhccHHHHHHHhCCCCCC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC--ETVR----RT-MHIVNLDPA-AENFDYPVAMDIRELISLEDVMEELGLGPNG 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~--~~~~----G~-I~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 72 (175)
+|++++|+||||||||||++.+++.. +|++ |+ |++++.+.. .+.+.+.+ +.. .+...++.+++.+....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~--q~~-~~~~~~v~~ni~~~~~~ 206 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIA--QNR-GLDPDEVLKHIYVARAF 206 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHH--HTT-TCCHHHHGGGEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHH--HHc-CCCHHHHhhCEEEEecC
Confidence 48999999999999999999999998 6776 67 888886541 11111111 000 11123455554432211
Q ss_pred chhhhHHHHHHHHHHHHHHHhhc-c----CCCCEEEEeCCCccccccc------------chHHHHHHHHHH-hCCCcEE
Q 030566 73 GLIYCMEHLEDNLDDWLAEELDN-Y----LDDDYLVFDCPGQIELFTH------------VPVLRNFVDHLK-SRNFNVC 134 (175)
Q Consensus 73 ~~~~~~~~~~~~~~~~l~~~l~~-~----~~p~lliLDEP~~~~~~~~------------~~~~~~~l~~l~-~~g~tvl 134 (175)
. .. .+.+....++.+.. + .+|+++++|||+....... ...+...|+++. +.+.||
T Consensus 207 ~----~~--~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tv- 279 (349)
T 1pzn_A 207 N----SN--HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAV- 279 (349)
T ss_dssp S----HH--HHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEE-
T ss_pred C----hH--HHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEE-
Confidence 0 11 12222223333331 1 3899999999943322210 122333445553 458999
Q ss_pred EEEeeeccchhhhhc
Q 030566 135 AVYLLDSQVCIRFRT 149 (175)
Q Consensus 135 i~~l~~sH~~~~~~~ 149 (175)
++++|.......
T Consensus 280 ---ii~~h~~~~~~~ 291 (349)
T 1pzn_A 280 ---FVTNQVQARPDA 291 (349)
T ss_dssp ---EEEEECC-----
T ss_pred ---EEEccccccccc
Confidence 889998776543
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.56 E-value=4e-16 Score=136.48 Aligned_cols=136 Identities=15% Similarity=-0.011 Sum_probs=68.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccCcc-ccceeEEeecCccc----------ccCCCCccCCcchhccHHHHHHHhCCCCCC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAA----------ENFDYPVAMDIRELISLEDVMEELGLGPNG 72 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~-~~G~I~i~g~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 72 (175)
.+||+||||||||||+++|+|+..| ++|.|+++|.++.. ..+++.+ +....+...++.+++......
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~--Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQD--YEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC-----CCCCCHHHHHTTHHHHHHH
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeec--ccccCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999999988 79999998876421 1223333 222222333333322110000
Q ss_pred chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCC------CcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhh
Q 030566 73 GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCP------GQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIR 146 (175)
Q Consensus 73 ~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP------~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~ 146 (175)
..... ...+. ....++.... ..|+++++||| ...........+.++++++.+++.++++ ++++|+++.
T Consensus 125 ~~~~~-~~~s~-~~i~l~i~~~--~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil--~vvt~~~d~ 198 (608)
T 3szr_A 125 IAGEG-MGISH-ELITLEISSR--DVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISL--VVVPSNVDI 198 (608)
T ss_dssp HHCSS-SCCCS-CCEEEEEEES--SSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEE--EEEESSSCT
T ss_pred hcCCc-cccch-HHHHHHhcCC--CCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCce--EEEeccchh
Confidence 00000 00000 0000001112 37999999999 4443444455677788886544434422 778888764
Q ss_pred h
Q 030566 147 F 147 (175)
Q Consensus 147 ~ 147 (175)
+
T Consensus 199 a 199 (608)
T 3szr_A 199 A 199 (608)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=117.43 Aligned_cols=69 Identities=12% Similarity=0.053 Sum_probs=54.7
Q ss_pred HHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccch
Q 030566 86 DDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTH 161 (175)
Q Consensus 86 ~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~ 161 (175)
+.++++++.. +|++++||||+...+......+.++++++.++|.|| +++||+ .++.+.||+++.+....
T Consensus 262 ~l~~a~~l~~--~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~v----i~~sH~-~~~~~~~d~~~~l~~~~ 330 (339)
T 3qkt_A 262 RLAMSLYLAG--EISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV----ILVSHD-EELKDAADHVIRISLEN 330 (339)
T ss_dssp HHHHHHHTTT--TTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEE----EEEESC-GGGGGGCSEEEEEEEET
T ss_pred HHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEE----EEEECh-HHHHHhCCEEEEEEecC
Confidence 4566667777 999999999966666666667777888887778899 999999 45788999999887543
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-15 Score=112.20 Aligned_cols=107 Identities=12% Similarity=0.111 Sum_probs=65.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccce-eEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHH
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRT-MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~-I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (175)
|+.++|.||||||||||++++++.+.|.+|. +.+ ++ ..+..+.+. ..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~---------------~~------~~~~~~~~~-----------~~ 85 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF---------------FD------TKDLIFRLK-----------HL 85 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE---------------EE------HHHHHHHHH-----------HH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE---------------EE------HHHHHHHHH-----------HH
Confidence 7899999999999999999999999877763 211 01 111111110 00
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCCc-ccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhh
Q 030566 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRF 147 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~~~~p~lliLDEP~~-~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~ 147 (175)
........ ...... +|++++||||.. .......+.+.+++....++|.++ +++||...+.
T Consensus 86 ~~~~~~~~-~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~i----i~tsn~~~~~ 146 (180)
T 3ec2_A 86 MDEGKDTK-FLKTVL--NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKST----IITTNYSLQR 146 (180)
T ss_dssp HHHTCCSH-HHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEE----EEECCCCSCC
T ss_pred hcCchHHH-HHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCE----EEEcCCChhH
Confidence 00000000 011123 899999999942 222223445666777776778999 8999987654
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.9e-15 Score=133.57 Aligned_cols=137 Identities=12% Similarity=0.083 Sum_probs=73.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-ccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+|++++|+||||||||||+|+|+|+... ..|.. .+.....+++.. +....+. +.+++..+... .
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~----vpa~~~~i~~~~--~i~~~~~---~~d~l~~~~st---f--- 670 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY----VPAQKVEIGPID--RIFTRVG---AADDLASGRST---F--- 670 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC----BSSSEEEECCCC--EEEEEEC-----------------C---
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc----cchhcccceeHH--HHHhhCC---HHHHHHhhhhh---h---
Confidence 4899999999999999999999998532 23311 011111222222 1111111 11222111100 0
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCcc-cccccchHHHHHHHHHHh-CCCcEEEEEeeeccchhhhhcCCCceeEe
Q 030566 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQI-ELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~-~~~~~~~~~~~~l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
. .+..+.......+. +|+++|||||+.. +..+.....+.+++.+++ .|.++ +++||+.+.. .+++++..+
T Consensus 671 ~-~e~~~~~~il~~a~--~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~v----l~~TH~~el~-~l~d~~~~v 742 (800)
T 1wb9_A 671 M-VEMTETANILHNAT--EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALT----LFATHYFELT-QLPEKMEGV 742 (800)
T ss_dssp H-HHHHHHHHHHHHCC--TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEE----EEECSCGGGG-GHHHHSTTE
T ss_pred h-HHHHHHHHHHHhcc--CCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeE----EEEeCCHHHH-HHhhhhhce
Confidence 0 11222222223355 9999999999333 223333334678888877 48999 9999998654 577755444
Q ss_pred ccc
Q 030566 158 CCT 160 (175)
Q Consensus 158 ~~~ 160 (175)
.++
T Consensus 743 ~n~ 745 (800)
T 1wb9_A 743 ANV 745 (800)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-16 Score=128.11 Aligned_cols=155 Identities=14% Similarity=0.094 Sum_probs=89.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--ccCCC------------Ccc--CCcchhcc----HH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDY------------PVA--MDIRELIS----LE 60 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--~~~~~------------~~~--~~~~~~~~----~~ 60 (175)
+|++++|+||||||||||+++|+|+.+|+.|.+.+.|++... ..+.+ ... ......+. ..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~ 149 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTAT 149 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHH
Confidence 599999999999999999999999999999999998876321 00111 000 00011110 11
Q ss_pred HHHHHh-CCCCCCc-hhhhHHHHHHH-HHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh--CCC-cEE
Q 030566 61 DVMEEL-GLGPNGG-LIYCMEHLEDN-LDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS--RNF-NVC 134 (175)
Q Consensus 61 ~~~~~~-~l~~~~~-~~~~~~~~~~~-~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~--~g~-tvl 134 (175)
.+.+.+ ..+.... .......+++. ++..++ .. +|++ +..........+.++++++.+ +|. |.+
T Consensus 150 ~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~la---l~--~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~ 218 (347)
T 2obl_A 150 TIAEYFRDQGKNVLLMMDSVTRYARAARDVGLA---SG--EPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAI 218 (347)
T ss_dssp HHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHH---TT--CCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEE
T ss_pred HHHHHHHhccccHHHHHhhHHHHHHHHHHHHHH---cC--CCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeE
Confidence 122221 1111000 00123344433 334433 34 6665 233333344455667877753 464 333
Q ss_pred EEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 135 AVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 135 i~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
.+++++||+++ +.+||++..+..++.+..++.
T Consensus 219 ~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l 250 (347)
T 2obl_A 219 YTVLLESDNVN--DPIGDEVRSILDGHIVLTREL 250 (347)
T ss_dssp EEEECCSSCCC--CHHHHHHHHHCSEEEEBCHHH
T ss_pred EEEEEeCCCCC--ChhhhheEEeeCcEEEEeCCH
Confidence 34499999998 678999999988888776653
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-16 Score=129.09 Aligned_cols=32 Identities=22% Similarity=0.154 Sum_probs=29.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccce
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRT 32 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~ 32 (175)
+|+++||+||||||||||+++|+|+++|+.|.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 48999999999999999999999999998773
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-14 Score=108.70 Aligned_cols=144 Identities=13% Similarity=-0.010 Sum_probs=78.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc-ccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+|++++|+||||||||||++.+++ ++..+.++++.... ....+.... ....+...++.+++.+.... ...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~ 89 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQMA---ETRGLNPEEALSRFILFTPS----DFK 89 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHHHH---HTTTCCHHHHHHHEEEECCT----TTS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHHHH---HhcCCChHHHhhcEEEEecC----CHH
Confidence 489999999999999999999999 44334445444320 000000000 00001112233333221111 001
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccc-----cchH---HHHHHHHHHh-CCCcEEEEEeeeccchh-----
Q 030566 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFT-----HVPV---LRNFVDHLKS-RNFNVCAVYLLDSQVCI----- 145 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~-----~~~~---~~~~l~~l~~-~g~tvli~~l~~sH~~~----- 145 (175)
. +++....++++..- +|+++++|||+...... .... +...|+++.+ .+.|| ++++|...
T Consensus 90 ~--~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~v----i~~~h~~~~~~~~ 162 (220)
T 2cvh_A 90 E--QRRVIGSLKKTVDS-NFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPV----IVINQVHFDSRTE 162 (220)
T ss_dssp H--HHHHHHHHHHHCCT-TEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCE----EEEECSSSSCTTS
T ss_pred H--HHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEE----EEEeeEEEcCCCC
Confidence 1 12223334455551 49999999994332111 1122 2334666643 48899 88999876
Q ss_pred --------hhhcCCCceeEeccc
Q 030566 146 --------RFRTLPPCIVCFCCT 160 (175)
Q Consensus 146 --------~~~~~~~~~~~~~~~ 160 (175)
.++..+|+++.+...
T Consensus 163 ~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 163 MTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp SCCSCCCHHHHHTSSEEEEEEEC
T ss_pred ccccCCCcceeecCcEEEEEEEe
Confidence 456789999988765
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-14 Score=119.38 Aligned_cols=129 Identities=13% Similarity=0.069 Sum_probs=84.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhcc-HHHHHHHhCCCCCCchhhhHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS-LEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+|++++|+||||||||||+++|+|+++|++|.|.++|.... ...... +....+. .... .+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~--~~~~~~--~~v~~v~~q~~~---~~~----------- 235 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPEL--FLPDHP--NHVHLFYPSEAK---EEE----------- 235 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCC--CCTTCS--SEEEEECC---------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcccc--CccccC--CEEEEeecCccc---ccc-----------
Confidence 48999999999999999999999999999999999874211 110000 1001111 0000 000
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEecc
Q 030566 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
.....++..++.++.. +|+.+++|||......+ +++.+.....|+ +.++|.. .+...++|+..+..
T Consensus 236 ~~~~t~~~~i~~~l~~--~pd~~l~~e~r~~~~~~-------~l~~l~~g~~~~----l~t~H~~-~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 236 NAPVTAATLLRSCLRM--KPTRILLAELRGGEAYD-------FINVAASGHGGS----ITSCHAG-SCELTFERLALMVL 301 (361)
T ss_dssp ---CCHHHHHHHHTTS--CCSEEEESCCCSTHHHH-------HHHHHHTTCCSC----EEEEECS-SHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHhc--CCCEEEEcCchHHHHHH-------HHHHHhcCCCeE----EEEECCC-CHHHHHHHHHHHHh
Confidence 0112344566777888 99999999994433343 787776555677 7778874 58888888888876
Q ss_pred ch
Q 030566 160 TH 161 (175)
Q Consensus 160 ~~ 161 (175)
+.
T Consensus 302 ~~ 303 (361)
T 2gza_A 302 QN 303 (361)
T ss_dssp TS
T ss_pred cc
Confidence 54
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-15 Score=129.06 Aligned_cols=153 Identities=10% Similarity=-0.012 Sum_probs=89.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC---ccc------------ccCCCCccCCcchhccHHH----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD---PAA------------ENFDYPVAMDIRELISLED---- 61 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~---~~~------------~~~~~~~~~~~~~~~~~~~---- 61 (175)
+|++++|+||||||||||+++|+|+.+|++|.|.+.|.. ... +.+.+.+.. ....+...+
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~-~~~~~~~~~v~~~ 234 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA-DVSPLLRMQGAAY 234 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT-TSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC-CCCHHHHHHHHHH
Confidence 599999999999999999999999999999999999983 211 112233211 111111111
Q ss_pred ---HHHHhCCCCCC--chhhhHHHHHHH-HHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh---C-CC
Q 030566 62 ---VMEELGLGPNG--GLIYCMEHLEDN-LDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS---R-NF 131 (175)
Q Consensus 62 ---~~~~~~l~~~~--~~~~~~~~~~~~-~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~---~-g~ 131 (175)
..+.+...... ........++.. |+..++ .. +|++ ...........+.++++++.+ + |.
T Consensus 235 ~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA---l~--~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~Gs 303 (438)
T 2dpy_A 235 ATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA---IG--EPPA------TKGYPPSVFAKLPALVERAGNGIHGGGS 303 (438)
T ss_dssp HHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH---TT--CCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCE
T ss_pred HHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH---hC--CCcc------cccCCHHHHHHHHHHHHHHHhccCCCCc
Confidence 12222111110 001112334422 555554 44 7776 333334444456667777654 2 53
Q ss_pred -cEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 132 -NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 132 -tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|.+.+++++||+++ ...+|+++.+..++.+..++
T Consensus 304 iT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~ 338 (438)
T 2dpy_A 304 ITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSRR 338 (438)
T ss_dssp EEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECHH
T ss_pred ccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeCC
Confidence 23333399999998 67788888888777766554
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-14 Score=114.02 Aligned_cols=136 Identities=14% Similarity=0.109 Sum_probs=70.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-ccCCCCccCCcchh--------------ccHHHHHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-ENFDYPVAMDIREL--------------ISLEDVMEE 65 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-~~~~~~~~~~~~~~--------------~~~~~~~~~ 65 (175)
+|++++|+||||||||||++.+++... .|++. .|.++.. ..+.|...-...+. .....+++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~ 105 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADG 105 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCc
Confidence 589999999999999999999998664 34332 1222110 00111000000000 001233455
Q ss_pred hCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCc--ccccccc---hHHHHHHHHHH-hCCCcEEEEEee
Q 030566 66 LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHV---PVLRNFVDHLK-SRNFNVCAVYLL 139 (175)
Q Consensus 66 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~--~~~~~~~---~~~~~~l~~l~-~~g~tvli~~l~ 139 (175)
+.+....... ...++..+.. ..+++.. +|+++++|||+. ..+.+.. ..+...|+++. +.|.|| ++
T Consensus 106 l~l~~~~~~~--~~~ls~g~~~-~i~~l~~--~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tv----i~ 176 (279)
T 1nlf_A 106 LLIQPLIGSL--PNIMAPEWFD-GLKRAAE--GRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSI----VF 176 (279)
T ss_dssp EEECCCTTSC--CCTTSHHHHH-HHHHHHT--TCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEE----EE
T ss_pred eEEeecCCCC--cccCCHHHHH-HHHHhcC--CCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEE----EE
Confidence 5443321111 1112222211 2346667 999999999944 2222222 44556677774 569999 99
Q ss_pred eccchhhhh
Q 030566 140 DSQVCIRFR 148 (175)
Q Consensus 140 ~sH~~~~~~ 148 (175)
++|......
T Consensus 177 i~H~~~~~~ 185 (279)
T 1nlf_A 177 LHHASKGAA 185 (279)
T ss_dssp EEEC-----
T ss_pred EecCCCccc
Confidence 999887653
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-15 Score=124.46 Aligned_cols=147 Identities=7% Similarity=-0.005 Sum_probs=77.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCcccc----ceeEEeecCcccccCCCCccCCcchhc--------cHHHHHHHhCCC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVR----RTMHIVNLDPAAENFDYPVAMDIRELI--------SLEDVMEELGLG 69 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~----G~I~i~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~ 69 (175)
|+.++|+||||||||||+|+|+|+++|++ |++.+++..... ...+.. .+..... ...++.+++.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~-~~~~~~-~~~~~I~~~~q~~~~~~~t~~~nl~~~ 247 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGD-EQAMQY-SDYPQMALGHQRYIDYAVRHSHKIAFI 247 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSC-TTSSCT-TTHHHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCC-cccCCh-hHHHHHHHHHHHHHHHHHhccCCEEEE
Confidence 78999999999999999999999999999 888774321000 011000 0000000 011222333222
Q ss_pred CCCchhhhHHHHH--HHHHHHHHHHh-hccCCCCEEEEeC---CCc------ccccccchHHHHHHHHHH-hCCCcEEEE
Q 030566 70 PNGGLIYCMEHLE--DNLDDWLAEEL-DNYLDDDYLVFDC---PGQ------IELFTHVPVLRNFVDHLK-SRNFNVCAV 136 (175)
Q Consensus 70 ~~~~~~~~~~~~~--~~~~~~l~~~l-~~~~~p~lliLDE---P~~------~~~~~~~~~~~~~l~~l~-~~g~tvli~ 136 (175)
............+ .+++..+++.. .. +|++++||| |.. ......+..+.+.++++. +.+.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~i--- 322 (365)
T 1lw7_A 248 DTDFITTQAFCIQYEGKAHPFLDSMIKEY--PFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPY--- 322 (365)
T ss_dssp SSCHHHHHHHHHHHHSCCCHHHHHHHHHS--CCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCC---
T ss_pred eCCchHHHHHHHHHcCCCCHHHHHHHhhc--CCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCE---
Confidence 1111111111111 22334445543 35 899999999 621 112223445666776654 458899
Q ss_pred EeeeccchhhhhcCCCceeEe
Q 030566 137 YLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 137 ~l~~sH~~~~~~~~~~~~~~~ 157 (175)
++++|. .+.+++++++.++
T Consensus 323 -lilde~-~~~~r~~~~i~~i 341 (365)
T 1lw7_A 323 -IEIESP-SYLDRYNQVKAVI 341 (365)
T ss_dssp -EEEECS-SHHHHHHHHHHHH
T ss_pred -EEeCCC-CHHHHHHHHHHHH
Confidence 777764 4555555544443
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-14 Score=104.02 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=37.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~ 41 (175)
+|++++|+||||||||||+|+|+|++ |++|+|.++|+++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLV 71 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeee
Confidence 49999999999999999999999999 99999999988764
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.43 E-value=5.1e-14 Score=105.18 Aligned_cols=38 Identities=32% Similarity=0.379 Sum_probs=33.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~ 41 (175)
||++++|+||||||||||+++|++ +.+|++.+++.++.
T Consensus 1 mg~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~ 38 (189)
T 2bdt_A 1 MKKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIIN 38 (189)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchh
Confidence 689999999999999999999987 67899999886643
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3e-14 Score=108.07 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=26.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+|+++||+||||||||||+++|+|+++|
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~ 32 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGE 32 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999999999876
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-14 Score=117.62 Aligned_cols=124 Identities=13% Similarity=-0.003 Sum_probs=70.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC-cc-------cccCCCCccCCcchhccHHHHHHHhCCCCCC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PA-------AENFDYPVAMDIRELISLEDVMEELGLGPNG 72 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 72 (175)
+|++++|+||||||||||+++|+|++ +|+|...+.. +. ..++.+.+ +..+ ...+.++.+ +.. .
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~~lf~~ti~~~ni~~~~--~~~~--~~~~~i~~~-L~~-g 195 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKSHFWLASLADTRAALVD--DATH--ACWRYFDTY-LRN-A 195 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTSGGGGGGGTTCSCEEEE--EECH--HHHHHHHHT-TTG-G
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCccccccccHHHHhhccCc--cccH--HHHHHHHHH-hHc-c
Confidence 59999999999999999999999998 8999754321 10 01111111 0000 123344442 111 1
Q ss_pred chhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcC
Q 030566 73 GLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTL 150 (175)
Q Consensus 73 ~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~ 150 (175)
.. ...+| ++|| +|++.. +|++|| +...+......+. ..||++..+ .+
T Consensus 196 -ld--g~~LSgGqkQR---ARAll~--~p~iLl----Ts~LD~~~~~~i~------------------~ltH~~~~~-~~ 244 (305)
T 2v9p_A 196 -LD--GYPVSIDRKHK---AAVQIK--APPLLV----TSNIDVQAEDRYL------------------YLHSRVQTF-RF 244 (305)
T ss_dssp -GG--TCCEECCCSSC---CCCEEC--CCCEEE----EESSCSTTCGGGG------------------GGTTTEEEE-EC
T ss_pred -CC--ccCcCHHHHHH---HHHHhC--CCCEEE----ECCCCHHHHHHHH------------------HHhCCHHHH-Hh
Confidence 11 12233 6676 888888 999999 2221122111111 128887754 68
Q ss_pred CCceeEeccchhhHH
Q 030566 151 PPCIVCFCCTHTVVQ 165 (175)
Q Consensus 151 ~~~~~~~~~~~~~~~ 165 (175)
+|++ +++.|..+.+
T Consensus 245 aD~i-vl~~G~iv~~ 258 (305)
T 2v9p_A 245 EQPC-TDESGEQPFN 258 (305)
T ss_dssp CCCC-CCC---CCCC
T ss_pred CCEE-EEeCCEEEEe
Confidence 9999 9988876643
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-12 Score=108.48 Aligned_cols=140 Identities=14% Similarity=0.094 Sum_probs=77.7
Q ss_pred CCeEEEEECCCCCcHHHHHH--HHHccCccccc-----eeEEeecCccc--------ccCCCCccCCcchhccHHHHHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCS--SLYRHCETVRR-----TMHIVNLDPAA--------ENFDYPVAMDIRELISLEDVMEE 65 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk--~i~gl~~~~~G-----~I~i~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 65 (175)
+|++++|+||||||||||++ ++.++.+++.| .+++++.+... +..++ ...+++++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl----------~~~~vlen 246 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGL----------DPDDALNN 246 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTC----------CHHHHHHT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCC----------ChHhHhhc
Confidence 48999999999999999999 45677776544 77787765211 11111 12344554
Q ss_pred hCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCccccccc---------c---hHHHHHHHHHHh-CCCc
Q 030566 66 LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTH---------V---PVLRNFVDHLKS-RNFN 132 (175)
Q Consensus 66 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~---------~---~~~~~~l~~l~~-~g~t 132 (175)
+.+..... .....+............ +|+++++|||+....... . ..+...|+++++ .|.|
T Consensus 247 i~~~~~~~----~~~~~~~l~~~~~~l~~~--~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~git 320 (400)
T 3lda_A 247 VAYARAYN----ADHQLRLLDAAAQMMSES--RFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVA 320 (400)
T ss_dssp EEEEECCS----HHHHHHHHHHHHHHHHHS--CEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_pred EEEeccCC----hHHHHHHHHHHHHHHHhc--CCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 43322211 111111111111112224 899999999932221110 1 234456667654 5999
Q ss_pred EEEEEeeeccchh-------------------hhhcCCCceeEeccc
Q 030566 133 VCAVYLLDSQVCI-------------------RFRTLPPCIVCFCCT 160 (175)
Q Consensus 133 vli~~l~~sH~~~-------------------~~~~~~~~~~~~~~~ 160 (175)
| ++++|... .++..+|+++.+..+
T Consensus 321 V----Ilv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 321 V----VVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp E----EEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred E----EEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 9 88888732 235556777777654
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.4e-12 Score=104.41 Aligned_cols=71 Identities=8% Similarity=-0.092 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhh---------ccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCC
Q 030566 82 EDNLDDWLAEELD---------NYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPP 152 (175)
Q Consensus 82 ~~~~~~~l~~~l~---------~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~ 152 (175)
.|+++..++++++ . +|++++||||....+...+..+.+.+.++ +.|+ +++|| .++ .++
T Consensus 269 Gqqq~l~lA~~La~~~l~~~~~~--~p~iLLLDEp~s~LD~~~~~~l~~~l~~~---~qt~----i~~th-~~~---~~~ 335 (359)
T 2o5v_A 269 GEGRTVALALRRAELELLREKFG--EDPVLLLDDFTAELDPHRRQYLLDLAASV---PQAI----VTGTE-LAP---GAA 335 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS--SCCEEEECCGGGCCCHHHHHHHHHHHHHS---SEEE----EEESS-CCT---TCS
T ss_pred HHHHHHHHHHHHHHhhhhhhccC--CCCEEEEeCccccCCHHHHHHHHHHHHhc---CcEE----EEEEe-ccc---cCC
Confidence 3778889999888 6 99999999995555555555555566554 2466 88899 444 889
Q ss_pred ceeEeccchhhHH
Q 030566 153 CIVCFCCTHTVVQ 165 (175)
Q Consensus 153 ~~~~~~~~~~~~~ 165 (175)
+++.+..|..+..
T Consensus 336 ~i~~l~~G~i~~~ 348 (359)
T 2o5v_A 336 LTLRAQAGRFTPV 348 (359)
T ss_dssp EEEEEETTEEEEC
T ss_pred EEEEEECCEEEec
Confidence 9999988876543
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.32 E-value=4.7e-12 Score=107.87 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=37.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
+|++++|+|+||||||||+++|+|++++++|+|.+.+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 4899999999999999999999999999999999987664
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-13 Score=106.38 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+|+++||+||||||||||+|+|+|++
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999999976
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.28 E-value=7.7e-14 Score=108.64 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=34.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHH---ccCccccceeEEeec
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLY---RHCETVRRTMHIVNL 38 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~---gl~~~~~G~I~i~g~ 38 (175)
+++++|+||||||||||+++|+ |+..++.|++.+.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~ 66 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENI 66 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHH
Confidence 6899999999999999999999 999999999988764
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=9.3e-13 Score=106.64 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=35.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHccC--------ccccceeEEeecCcc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHC--------ETVRRTMHIVNLDPA 41 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~--------~~~~G~I~i~g~~~~ 41 (175)
++++|+|+||||||||+|.|+|+. .|+.|+|.++|.++.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~ 51 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG 51 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence 589999999999999999999997 789999999997653
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.4e-12 Score=115.06 Aligned_cols=145 Identities=14% Similarity=0.042 Sum_probs=98.7
Q ss_pred HHHHHHHccCccccceeEEeecCccc-------ccCCCCcc--CCcchh----------ccHHHHHHHhCCCCCC-chhh
Q 030566 17 TYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA--MDIREL----------ISLEDVMEELGLGPNG-GLIY 76 (175)
Q Consensus 17 TLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~--~~~~~~----------~~~~~~~~~~~l~~~~-~~~~ 76 (175)
|...|..+.++|..++|.++|+++.. +...+... ++..+. -...+.+..+++.... ....
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~r~~ 462 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRSA 462 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTTSBG
T ss_pred cchhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCccccccCCc
Confidence 34456667788999999999987522 11111100 111111 1123455666765321 2222
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCC--EEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCce
Q 030566 77 CMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCI 154 (175)
Q Consensus 77 ~~~~~~~~~~~~l~~~l~~~~~p~--lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~ 154 (175)
..-+..|+||..|++++.. +|+ ++|||||+........+.+.++|++++++|.|| +++||+++.+.. +|++
T Consensus 463 ~~LSGGe~QRv~LAraL~~--~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tv----ivVtHd~~~~~~-aD~i 535 (916)
T 3pih_A 463 TTLSGGESQRIRLATQIGS--GLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTV----IVVEHDEEVIRN-ADHI 535 (916)
T ss_dssp GGCCHHHHHHHHHHHHHHT--TCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEE----EEECCCHHHHHT-CSEE
T ss_pred ccCCHHHHHHHHHHHHHhh--CCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEE----EEEeCCHHHHHh-CCEE
Confidence 2234449999999999998 777 999999977777777888889999998889999 999999988754 9999
Q ss_pred eEe------ccchhhHHhhh
Q 030566 155 VCF------CCTHTVVQRAY 168 (175)
Q Consensus 155 ~~~------~~~~~~~~~~~ 168 (175)
+.| ..|..+.++++
T Consensus 536 i~lgpgag~~~G~iv~~G~~ 555 (916)
T 3pih_A 536 IDIGPGGGTNGGRVVFQGTV 555 (916)
T ss_dssp EEEESSSGGGCSEEEEEECH
T ss_pred EEEcCCcccCCCEEEEeech
Confidence 999 66666655543
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.21 E-value=4.4e-11 Score=96.44 Aligned_cols=95 Identities=20% Similarity=0.225 Sum_probs=60.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (175)
+|++++++|+|||||||+++.|++.+++..|+|.+.+.|..... ..++ ...+.+..++........ ..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~--------a~eq--L~~~~~~~gl~~~~~~s~--~~ 170 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA--------AIEQ--LKIWGERVGATVISHSEG--AD 170 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH--------HHHH--HHHHHHHHTCEEECCSTT--CC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH--------HHHH--HHHHHHHcCCcEEecCCc--cC
Confidence 37899999999999999999999999998899999887653211 0011 122334444321110000 00
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCCc
Q 030566 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ 109 (175)
Q Consensus 81 ~~~~~~~~l~~~l~~~~~p~lliLDEP~~ 109 (175)
........+++++.. +|+++|+|||+.
T Consensus 171 ~~~v~~~al~~a~~~--~~dvvIiDtpg~ 197 (306)
T 1vma_A 171 PAAVAFDAVAHALAR--NKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHHHHHHHT--TCSEEEEEECCC
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEECCCc
Confidence 011112356677778 999999999954
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-11 Score=98.90 Aligned_cols=131 Identities=11% Similarity=0.078 Sum_probs=72.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccc-eeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G-~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
+|++++++|+|||||||+++.|++.+.+++| +|.+.+.++.. . ...+++ ....+..++...... ..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r------~--~a~eqL--~~~~~~~gl~~~~~~--~~- 170 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR------I--AAVEQL--KTYAELLQAPLEVCY--TK- 170 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS------T--THHHHH--HHHHTTTTCCCCBCS--SH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc------c--hHHHHH--HHHHHhcCCCeEecC--CH-
Confidence 3789999999999999999999999998888 78887766531 1 111111 112222333221111 11
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCCcEEEEEee-eccchhhhhcCCCcee
Q 030566 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLL-DSQVCIRFRTLPPCIV 155 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvli~~l~-~sH~~~~~~~~~~~~~ 155 (175)
...+..+++ .. +|+++|+|.|+..... ...+.++.+.+.. ....+++ ++ ++|...++.+.++++.
T Consensus 171 ---~~l~~al~~--~~--~~dlvIiDT~G~~~~~--~~~~~el~~~l~~~~~~~~~l--Vl~at~~~~~~~~~~~~~~ 237 (296)
T 2px0_A 171 ---EEFQQAKEL--FS--EYDHVFVDTAGRNFKD--PQYIDELKETIPFESSIQSFL--VLSATAKYEDMKHIVKRFS 237 (296)
T ss_dssp ---HHHHHHHHH--GG--GSSEEEEECCCCCTTS--HHHHHHHHHHSCCCTTEEEEE--EEETTBCHHHHHHHTTTTS
T ss_pred ---HHHHHHHHH--hc--CCCEEEEeCCCCChhh--HHHHHHHHHHHhhcCCCeEEE--EEECCCCHHHHHHHHHHHh
Confidence 122334443 36 9999999998444221 1122222222211 1111211 44 5888777777666543
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=100.43 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=27.0
Q ss_pred EEEECCCCCcHHHHHHHHHc-cCccccceeEEeecCc
Q 030566 5 QLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNLDP 40 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~g-l~~~~~G~I~i~g~~~ 40 (175)
+.|.||||+||||+++++++ +..|+.|++.++|.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 75 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence 78999999999999999999 8899999999987654
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-11 Score=94.37 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=37.5
Q ss_pred CCCEEEEeCCCccc---ccccchHHHHHHHHHHhCCCcEEEEEeeeccchhh--------hhcCCCceeEeccc
Q 030566 98 DDDYLVFDCPGQIE---LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIR--------FRTLPPCIVCFCCT 160 (175)
Q Consensus 98 ~p~lliLDEP~~~~---~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~--------~~~~~~~~~~~~~~ 160 (175)
+|+++++|+|+... .......+..+.+.+++.|.|| ++++|...+ ++.++|.++.+...
T Consensus 128 ~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~v----i~~~h~~~~~~~~~~~~~~~~~D~vi~L~~~ 197 (247)
T 2dr3_A 128 NAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTS----IFVSQVSVGERGFGGPGVEHGVDGIIRLDLD 197 (247)
T ss_dssp TCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEE----EEEEECC----CCC-CCHHHHSSEEEEEEEE
T ss_pred CCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeE----EEEecCCCCcccccccccceeEEEEEEEEEE
Confidence 89999999993322 1111233344444456678999 888888766 45677888887654
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.3e-12 Score=102.75 Aligned_cols=35 Identities=29% Similarity=0.305 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcc-CccccceeEEeecCc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLDP 40 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl-~~~~~G~I~i~g~~~ 40 (175)
++|+|+||||||||+++|+|. ..|++| +.+.|.++
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~ 56 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKI 56 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-----------------
T ss_pred EEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCccc
Confidence 589999999999999999998 888899 77766543
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.4e-12 Score=107.95 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=36.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
++++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 79999999999999999999999999999999998764
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.17 E-value=6e-11 Score=86.08 Aligned_cols=72 Identities=14% Similarity=0.056 Sum_probs=59.2
Q ss_pred HHHHHHHHHH------HHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCce
Q 030566 81 LEDNLDDWLA------EELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCI 154 (175)
Q Consensus 81 ~~~~~~~~l~------~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~ 154 (175)
.+++++..++ +++.. +|++++||||+...+....+.+.+.+++++++|.|| +++||+. ++.++++++
T Consensus 60 gGe~qrv~lA~~Lalaral~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~ti----iivsH~~-~~~~~~d~i 132 (148)
T 1f2t_B 60 GGERIALGLAFRLAMSLYLAG--EISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV----ILVSHDE-ELKDAADHV 132 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS--SCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEE----EEEESCG-GGGGGCSEE
T ss_pred HHHHHHHHHHhhhHHHHHHcC--CCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEE----EEEEChH-HHHHhCCEE
Confidence 4477777665 77888 999999999966666667777888888887678899 9999998 678999999
Q ss_pred eEecc
Q 030566 155 VCFCC 159 (175)
Q Consensus 155 ~~~~~ 159 (175)
+.+..
T Consensus 133 i~l~~ 137 (148)
T 1f2t_B 133 IRISL 137 (148)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99953
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.8e-11 Score=90.04 Aligned_cols=38 Identities=32% Similarity=0.296 Sum_probs=34.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
+|++++|+||||||||||+|+|+|. ++.|.|.+++.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDL 45 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccch
Confidence 4899999999999999999999998 6789999988654
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.5e-13 Score=112.97 Aligned_cols=149 Identities=7% Similarity=0.001 Sum_probs=82.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc------------cCccccceeEEeecCccc------------------ccCCCCcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYR------------HCETVRRTMHIVNLDPAA------------------ENFDYPVA 50 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~g------------l~~~~~G~I~i~g~~~~~------------------~~~~~~~~ 50 (175)
+|..+||+|+||||||||+++|+| ...|+.|.+.+.|..... +..++...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 488999999999999999999999 567889999987632100 00011111
Q ss_pred CCcchhccHHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHh---hccCCC--CEEEEeCCCcccccccchHHHHHHHH
Q 030566 51 MDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEEL---DNYLDD--DYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~~p--~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
.+..+.+. ...+..+.-......... ... ...+ ..-.+| ++.++|||....+.......+..++.
T Consensus 99 ~s~~e~L~-~~fl~~ir~~d~il~Vvd--~~~-------d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~~l~~ 168 (392)
T 1ni3_A 99 ASTGVGLG-NAFLSHVRAVDAIYQVVR--AFD-------DAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRK 168 (392)
T ss_dssp CCSSSSSC-HHHHHHHTTCSEEEEEEE--CCC-------TTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHH-HHHHHHHHHHHHHHHHHh--ccc-------cceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHHHHHH
Confidence 11111110 001111100000000000 000 0000 001278 88999999444444444444556666
Q ss_pred H-HhCCCcEEEEEeeeccchhhhhcCCCcee-Eeccc-hhhHH
Q 030566 126 L-KSRNFNVCAVYLLDSQVCIRFRTLPPCIV-CFCCT-HTVVQ 165 (175)
Q Consensus 126 l-~~~g~tvli~~l~~sH~~~~~~~~~~~~~-~~~~~-~~~~~ 165 (175)
. .+.|.|+ + +|.+.++.++|+++. ++..+ ..++.
T Consensus 169 ~~~~~g~ti----~--sh~~~~~~~l~~~i~~~L~~G~~~~~~ 205 (392)
T 1ni3_A 169 ITSRGANTL----E--MKAKKEEQAIIEKVYQYLTETKQPIRK 205 (392)
T ss_dssp TTCCSSCSS----S--HHHHHHHHHHHHHHHHHHHTTCSCGGG
T ss_pred HHHhcCCcc----c--cccHHHHHHHHHHHHHHhccCCceeec
Confidence 5 5556666 4 999999999999988 77777 55543
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-10 Score=93.85 Aligned_cols=92 Identities=18% Similarity=0.067 Sum_probs=61.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCc-hhhhHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGG-LIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~ 79 (175)
+|++++++|+|||||||+++.+++++.+..|+|.+.+.+++..... ++ ...+.+..++..... .....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~--------~q--l~~~~~~~~l~~~~~~~~~~p- 165 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR--------EQ--LRLLGEKVGVPVLEVMDGESP- 165 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH--------HH--HHHHHHHHTCCEEECCTTCCH-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH--------HH--HHHhcccCCeEEEEcCCCCCH-
Confidence 4899999999999999999999999999999999998876432110 11 112334444432110 00111
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCC
Q 030566 80 HLEDNLDDWLAEELDNYLDDDYLVFDCP 107 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP 107 (175)
.+.++..++.+... +++++|+|||
T Consensus 166 --~~l~~~~l~~~~~~--~~D~viiDtp 189 (295)
T 1ls1_A 166 --ESIRRRVEEKARLE--ARDLILVDTA 189 (295)
T ss_dssp --HHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred --HHHHHHHHHHHHhC--CCCEEEEeCC
Confidence 12235566666667 8999999999
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=97.78 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=23.9
Q ss_pred EEEECCCCCcHHHHHHHHHccCccccc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCETVRR 31 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~~~~G 31 (175)
++|+|+||||||||+++|+|...+..|
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~~~~~ 60 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDLYSPE 60 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCCC
Confidence 699999999999999999999875444
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-11 Score=93.63 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=35.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc---ccceeEEeecCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~---~~G~I~i~g~~~ 40 (175)
+|++++|+||||||||||+++|+|+++| +.|.|.++|...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 4899999999999999999999999986 478888877654
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.7e-11 Score=97.52 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=36.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc--cccceeEE---eecC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHI---VNLD 39 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~--~~~G~I~i---~g~~ 39 (175)
+|+++||+||||||||||+++|+|+++ |++|+|.+ +|..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 489999999999999999999999988 99999999 7654
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.09 E-value=4.3e-11 Score=96.13 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=28.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE---eecCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i---~g~~~ 40 (175)
+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|.+.
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~ 210 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHT 210 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------C
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCc
Confidence 48999999999999999999999999999999999 77664
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=5.3e-11 Score=97.11 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=39.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~ 42 (175)
+|++++|+|+||||||||+++|+|+++|++|+|.+.+.++..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 489999999999999999999999999999999999988743
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.3e-10 Score=96.01 Aligned_cols=26 Identities=35% Similarity=0.635 Sum_probs=24.0
Q ss_pred CCeE--EEEECCCCCcHHHHHHHHHccC
Q 030566 1 MGYA--QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei--~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+|++ ++|+||||||||||+|+|+|+.
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 4899 9999999999999999999984
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.06 E-value=5.9e-11 Score=89.23 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC-----ccccceeEE
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC-----ETVRRTMHI 35 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~-----~~~~G~I~i 35 (175)
+|+.++|+|+||||||||++.++|.. .|+.|.+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 48899999999999999999999998 788887654
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.05 E-value=4e-10 Score=102.31 Aligned_cols=103 Identities=9% Similarity=-0.049 Sum_probs=79.4
Q ss_pred HHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCC--CCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEe
Q 030566 62 VMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLD--DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (175)
Q Consensus 62 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~--p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l 138 (175)
.++.++++.. .......-+..++||..|++++.. + |+++|||||+........+.+.++|+++++.|.|| +
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~--~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TV----I 560 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGS--RLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTL----I 560 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTT--CCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEE----E
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhh--CCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEE----E
Confidence 4566777532 222222234459999999999998 7 48999999977777777888889999998889999 9
Q ss_pred eeccchhhhhcCCCceeEe------ccchhhHHhhhhcc
Q 030566 139 LDSQVCIRFRTLPPCIVCF------CCTHTVVQRAYSFL 171 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 171 (175)
+++|+++++. .+|+++.| ..|.++.++++.-+
T Consensus 561 vVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~ 598 (972)
T 2r6f_A 561 VVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEV 598 (972)
T ss_dssp EECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTT
T ss_pred EEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHH
Confidence 9999999875 79999999 56777777665443
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.04 E-value=5.8e-12 Score=97.61 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=29.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 46789999999999999999999999999999988765
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=5.5e-11 Score=89.81 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+|++++|+||||||||||+++|+|+++
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 489999999999999999999999875
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.4e-10 Score=87.07 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=29.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeec
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~ 38 (175)
+|++++|+||||||||||+++|+|+.+ .+.+.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~ 39 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA----EIKISIS 39 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEece
Confidence 499999999999999999999999975 4665553
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.4e-10 Score=97.31 Aligned_cols=40 Identities=30% Similarity=0.253 Sum_probs=37.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
+|++++|+||||||||||+++|+|+++|++|+|.+.+.++
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 4889999999999999999999999999999999988765
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-10 Score=92.11 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=31.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE---eecCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i---~g~~~ 40 (175)
+|++++|+||||||||||+|+|+ +.+|++|+|.+ .|.+.
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~ 205 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHT 205 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------C
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCc
Confidence 48999999999999999999999 99999999999 77654
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-10 Score=89.51 Aligned_cols=28 Identities=25% Similarity=0.513 Sum_probs=18.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH-ccCcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLY-RHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~-gl~~~ 28 (175)
+|++++|+||||||||||+++|+ |++++
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----C
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 58999999999999999999999 99854
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-09 Score=98.65 Aligned_cols=103 Identities=16% Similarity=-0.022 Sum_probs=77.4
Q ss_pred HHHHhCCCCC-CchhhhHHHHHHHHHHHHHHHhhccCCC--CEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEe
Q 030566 62 VMEELGLGPN-GGLIYCMEHLEDNLDDWLAEELDNYLDD--DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (175)
Q Consensus 62 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~p--~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l 138 (175)
.+..++++.. .......-+..++|+..|++++.. +| .++|||||+........+.+.+++++++++|.|| +
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~--~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TV----I 435 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYS--NLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSL----F 435 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTT--CCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEE----E
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhh--CCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEE----E
Confidence 3455666532 222222223449999999999999 88 5999999977777777788888999998889999 9
Q ss_pred eeccchhhhhcCCCceeEe------ccchhhHHhhhhcc
Q 030566 139 LDSQVCIRFRTLPPCIVCF------CCTHTVVQRAYSFL 171 (175)
Q Consensus 139 ~~sH~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 171 (175)
+++|+++.+ ..+|+++.| ..|..+.++++.-+
T Consensus 436 vVeHdl~~l-~~aD~ii~lgpgaG~~~G~iv~~g~~~~~ 473 (842)
T 2vf7_A 436 VVEHDLDVI-RRADWLVDVGPEAGEKGGEILYSGPPEGL 473 (842)
T ss_dssp EECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECGGGG
T ss_pred EEcCCHHHH-HhCCEEEEeCCCcccCCCEEEEecCHHHH
Confidence 999999865 579999999 56666666555433
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.98 E-value=2.8e-10 Score=93.58 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=30.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc-cccceeEEe-ecC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIV-NLD 39 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~-~~~G~I~i~-g~~ 39 (175)
+|++++|+||||||||||+|+|+|+.+ |.+|+|.+. |..
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g 254 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLG 254 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCC
Confidence 489999999999999999999999999 999999986 543
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.9e-10 Score=84.40 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=33.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-ccceeEEeecCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-~~G~I~i~g~~~ 40 (175)
+|++++|+||||||||||+++|++..++ ..|.|.....++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~ 44 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPP 44 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCC
Confidence 5899999999999999999999999874 667776655444
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.95 E-value=4e-10 Score=96.67 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=36.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~ 39 (175)
+|++++|+||||||||||+++|+|+++|++|.|++.|.+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 488999999999999999999999999999999998764
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-10 Score=94.24 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE---eecCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i---~g~~~ 40 (175)
+|++++|+||||||||||+|+|+|+.+|.+|+|.+ .|+..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~t 214 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHT 214 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCccc
Confidence 48999999999999999999999999999999998 66553
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.2e-10 Score=83.79 Aligned_cols=36 Identities=19% Similarity=0.116 Sum_probs=32.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
+|++++|+||||||||||+++|++.+ |.+.+++.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence 48999999999999999999999987 8899988764
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.3e-10 Score=89.52 Aligned_cols=40 Identities=25% Similarity=0.310 Sum_probs=36.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH---ccCccccceeE--------EeecCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLY---RHCETVRRTMH--------IVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~---gl~~~~~G~I~--------i~g~~~ 40 (175)
+|++++|+|||||||||++|+|+ |+..+++|.+. .+|.++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~ 76 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDI 76 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCc
Confidence 48899999999999999999999 99999999998 666654
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-10 Score=85.07 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=31.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccc---cceeEEeecC
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLD 39 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~---~G~I~i~g~~ 39 (175)
++++|+|+||||||||+++|+|+++|+ .|.|.++|.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 689999999999999999999999998 8999998876
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=6.8e-10 Score=83.57 Aligned_cols=40 Identities=25% Similarity=0.260 Sum_probs=35.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcccccee--EEeecCcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTM--HIVNLDPA 41 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I--~i~g~~~~ 41 (175)
+|++++|+|||||||||++++|++.++ ..|.+ +++|.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 489999999999999999999999998 78988 88876543
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=6.3e-09 Score=87.14 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=29.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcc-----------CccccceeEEee
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRH-----------CETVRRTMHIVN 37 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl-----------~~~~~G~I~i~g 37 (175)
|++++|+|+||||||||+++|+|. +.|+.|.+.+++
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~ 203 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE 203 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC
Confidence 788999999999999999999998 345556665543
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.4e-09 Score=83.67 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=32.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
+|++++|.|+||||||||+++|+|+ .|+|.+.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 4899999999999999999999998 78899988764
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.86 E-value=9.8e-10 Score=82.88 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=35.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
+|++++|+|+||||||||+++|++++++..|.+.+.+.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 3789999999999999999999999998899998876653
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.86 E-value=5.3e-09 Score=85.70 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=29.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
+|+++.|.||||||||||+..++.......|.+.+..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4899999999999999999888876655556655543
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.84 E-value=2.5e-09 Score=90.28 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=32.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccc-eeEEeecC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLD 39 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G-~I~i~g~~ 39 (175)
+|+++.|.|+||+|||||+..+++...+..| .|.+.+.+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 4899999999999999999999998776556 57665543
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-09 Score=81.18 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=28.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G 31 (175)
+|++++|+|||||||||++++|+++..|+.|
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 4899999999999999999999999977666
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.78 E-value=4e-09 Score=79.99 Aligned_cols=39 Identities=23% Similarity=0.401 Sum_probs=31.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc-ccceeEEeecC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLD 39 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~-~~G~I~i~g~~ 39 (175)
+|++++|+||||||||||++.|++.+++ ..+.+.....+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~ 46 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRL 46 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEeccccc
Confidence 4899999999999999999999999986 44555544433
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=4.7e-09 Score=76.92 Aligned_cols=36 Identities=19% Similarity=0.149 Sum_probs=31.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
+|++++|+|+|||||||++++|++.+ |.+.+++.++
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 48999999999999999999999875 7788887654
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=8.2e-09 Score=77.65 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=25.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
-+++|+|+|||||||++++|+++ |...+++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l-----g~~~id~ 32 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL-----GVPLVDA 32 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence 47999999999999999999983 5556654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-08 Score=85.08 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=35.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
+.+++++|+|||||||++..|++.+.+..++|.+.+.|+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 679999999999999999999999998888998877664
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.69 E-value=7.6e-09 Score=76.27 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=26.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccce
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRT 32 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~ 32 (175)
+.+|+||||||||||+++|++++.+..|.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 89999999999999999999988776654
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.69 E-value=7.6e-09 Score=78.34 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=25.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+|++++|+||||||||||++.|++..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 489999999999999999999999876
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.69 E-value=6.2e-08 Score=79.55 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=31.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
+|+++.|.||||||||||+..+++...+..|.+.+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~Vly 94 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAF 94 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 48999999999999999999999998877787644
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.4e-08 Score=85.53 Aligned_cols=71 Identities=11% Similarity=-0.127 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhhccCCC--CEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEecc
Q 030566 82 EDNLDDWLAEELDNYLDD--DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 82 ~~~~~~~l~~~l~~~~~p--~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
+++++..|++++.. +| +++|||||....+......+.++|+++++ |.|| +++||+++.+. .||+++++..
T Consensus 401 G~~qrv~la~~l~~--~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~v----i~itH~~~~~~-~~d~~~~~~~ 472 (517)
T 4ad8_A 401 GELSRVMLAVSTVL--GADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQV----LVVTHLAQIAA-RAHHHYKVEK 472 (517)
T ss_dssp SHHHHHHHHHHHHH--CCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEE----EEECCCHHHHH-HSSEEEEEEC
T ss_pred HHHHHHHHHHHHHh--CCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEE----EEEecCHHHHH-hCCEEEEEec
Confidence 38999999999999 99 99999999666666667788889999876 8999 99999998775 6999999954
Q ss_pred c
Q 030566 160 T 160 (175)
Q Consensus 160 ~ 160 (175)
+
T Consensus 473 ~ 473 (517)
T 4ad8_A 473 Q 473 (517)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=98.66 E-value=9.9e-09 Score=74.87 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=28.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
||++++|+|+|||||||++++|++.+.+ ..+++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998764 45553
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-08 Score=76.19 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=31.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccCcc-----------ccceeEEeecC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCET-----------VRRTMHIVNLD 39 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~-----------~~G~I~i~g~~ 39 (175)
.++|+|+||||||||++.++|...+ ++|+|.++|.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 77 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEE
Confidence 5899999999999999999998765 57888887754
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.6e-09 Score=89.85 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=35.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccc-eeE-EeecCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMH-IVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G-~I~-i~g~~~ 40 (175)
+|++++|+|+||||||||+|+|+|.+.|++| ++. ++|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 4899999999999999999999999999886 785 666544
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.4e-08 Score=82.27 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=30.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc--cccceeEEeecC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLD 39 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~--~~~G~I~i~g~~ 39 (175)
++||+||||||||||+++|+++++ |++|.+.+.+.+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D 131 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD 131 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence 899999999999999999999987 567886664443
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-07 Score=77.38 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=24.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETV 29 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~ 29 (175)
.+.|.||+|+|||||++.+++...+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 79999999999999999999988765
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.1e-08 Score=82.00 Aligned_cols=41 Identities=22% Similarity=0.464 Sum_probs=36.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~ 42 (175)
+.+++|+|++|||||||++.++|..++.+|+|.+.+.++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 67999999999999999999999999999999999888754
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.8e-08 Score=78.68 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=30.3
Q ss_pred EEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
++|+||||||||||+|+|+|...+ |.+.++|.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l 80 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPEL 80 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHH
Confidence 899999999999999999999877 6888887654
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.6e-08 Score=79.28 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=25.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCcccc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVR 30 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~ 30 (175)
+..+.|.||+|+|||||++.+++..++..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 56799999999999999999999876543
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.7e-07 Score=80.22 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=34.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc--cCccccceeEEeecCccc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYR--HCETVRRTMHIVNLDPAA 42 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~g--l~~~~~G~I~i~g~~~~~ 42 (175)
|.-+.|.|++||||||++++|.. +.+++.|++.+...|+..
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 45689999999999999999876 666777889888777653
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.54 E-value=4.4e-08 Score=79.34 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=37.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~ 41 (175)
+|++++++|+|||||||++..|++.+.+..|+|.+.+.|+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 37899999999999999999999999999999999888763
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.8e-08 Score=76.59 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=29.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC---ccccceeEE
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC---ETVRRTMHI 35 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~---~~~~G~I~i 35 (175)
+.+++|+||+||||||++++|++.+ .++.|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999876 677888765
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=98.52 E-value=2.1e-08 Score=86.48 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=33.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
+|++++|+||||+|||||+|+|++...+..|+|.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 4789999999999999999999999988888886655
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=4.8e-08 Score=72.83 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=29.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc-----c------ccceeEEeecC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE-----T------VRRTMHIVNLD 39 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~-----~------~~G~I~i~g~~ 39 (175)
.++|+|+||||||||++.++|... | ..|++.++|.+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 53 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 53 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE
Confidence 479999999999999999999842 2 35778877653
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=2.6e-07 Score=77.71 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=22.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.-+.|.||+|+|||||+++|++...
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999998764
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=5.3e-08 Score=71.64 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=32.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccc--eeEEeecCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G--~I~i~g~~~ 40 (175)
+|++++|+|++||||||+++.+++.+++ .| .+.+++...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 4899999999999999999999998866 56 566666543
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.47 E-value=5e-07 Score=76.84 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.|.||+|+|||||+|++++..
T Consensus 52 vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999854
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.9e-07 Score=67.48 Aligned_cols=73 Identities=8% Similarity=-0.012 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhhc--cCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEe
Q 030566 80 HLEDNLDDWLAEELDN--YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~--~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
+.+++++..++++++. +.+|++++||||....+..+...+.++++++.+ +.++ +++||+.. ....+|+++.+
T Consensus 66 SgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~----ivith~~~-~~~~ad~i~~v 139 (173)
T 3kta_B 66 SGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQF----IVITLRDV-MMANADKIIGV 139 (173)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEE----EEECSCHH-HHTTCSEEEEE
T ss_pred CHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEE----EEEEecHH-HHHhCCEEEEE
Confidence 3458899999998763 126799999999666666667778888888754 4577 88899865 45789988866
Q ss_pred c
Q 030566 158 C 158 (175)
Q Consensus 158 ~ 158 (175)
.
T Consensus 140 ~ 140 (173)
T 3kta_B 140 S 140 (173)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.46 E-value=7e-08 Score=80.75 Aligned_cols=72 Identities=13% Similarity=0.106 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhc--cCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEecc
Q 030566 83 DNLDDWLAEELDN--YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCC 159 (175)
Q Consensus 83 ~~~~~~l~~~l~~--~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~ 159 (175)
++++..++++++. +.+||+++||||....+..+...+.++++++.+++.++ +++||+.. ....+|+++.+.-
T Consensus 338 q~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~----ii~th~~~-~~~~~d~~~~~~~ 411 (430)
T 1w1w_A 338 EKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQF----IVISLKNT-MFEKSDALVGVYR 411 (430)
T ss_dssp HHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEE----EEECSCHH-HHTTCSEEEEEEE
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEE----EEEECCHH-HHHhCCEEEEEEE
Confidence 6677777887762 12899999999966666767777888888876557889 99999955 5578998888764
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.1e-07 Score=77.34 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=37.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~ 42 (175)
+|.+++++|+||||||||++.|++.+.+..|++.+.+.++..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 378999999999999999999999999989999988777643
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=4e-08 Score=79.66 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=31.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHccC----ccccceeEEeecC
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHC----ETVRRTMHIVNLD 39 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~----~~~~G~I~i~g~~ 39 (175)
+.++|.||||+|||||+++|+|.+ .+.+|.+...+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~ 92 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGD 92 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHH
Confidence 679999999999999999999998 6778877665543
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-07 Score=71.84 Aligned_cols=39 Identities=26% Similarity=0.274 Sum_probs=34.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccc--eeEEeecC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLD 39 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G--~I~i~g~~ 39 (175)
+|.+++|+|++||||||+++.|++.++|..| .+.+++..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 4889999999999999999999999987888 77776543
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.38 E-value=5.3e-07 Score=75.39 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=25.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCcccc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVR 30 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~ 30 (175)
|++++|+||||||||||+++|+++..+.+
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 78999999999999999999999887644
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=2.3e-07 Score=71.85 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=28.4
Q ss_pred EEEECCCCCcHHHHHHHHHccCccccceeEEeecC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~ 39 (175)
++|+||||||||||+++|++... .|.+.+++.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~ 84 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSD 84 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHH
Confidence 78999999999999999999875 6777776643
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=2.5e-07 Score=69.53 Aligned_cols=27 Identities=26% Similarity=0.360 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+|.+++|+|++||||||+++.|++.++
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999999999874
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.5e-07 Score=82.91 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=24.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCcccc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVR 30 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~ 30 (175)
|+.+.++||+||||||++.++++...+..
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~~~~~~ 137 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLFDEMPH 137 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHCGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 67899999999999999999877654443
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.33 E-value=3e-07 Score=72.33 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=28.6
Q ss_pred EEEECCCCCcHHHHHHHHHccCccccceeEEeecC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~ 39 (175)
++|+||||||||||+++|++..+ .|.+.+++.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~ 108 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSD 108 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHH
T ss_pred EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHH
Confidence 79999999999999999999885 6778776643
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.5e-07 Score=67.61 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=30.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
+|.+++|+|++||||||+++.|++.+.+..+.+.+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~ 46 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEV 46 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 48899999999999999999999998877777644
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.6e-06 Score=71.25 Aligned_cols=68 Identities=10% Similarity=0.094 Sum_probs=51.3
Q ss_pred HHHHH------HHHHHhhccCC-CCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCcee
Q 030566 83 DNLDD------WLAEELDNYLD-DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIV 155 (175)
Q Consensus 83 ~~~~~------~l~~~l~~~~~-p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~ 155 (175)
++++. .+++++.. + |++++||||....+......+.+.++++. ++.+| +++||+.+ +..++++++
T Consensus 285 ~~~~~~lal~la~a~~l~~--~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~v----i~~th~~~-~~~~~d~~~ 356 (371)
T 3auy_A 285 EQIAVALSLRLAIANALIG--NRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQM----IIITHHRE-LEDVADVII 356 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHS--SCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEE----EEEESCGG-GGGGCSEEE
T ss_pred HHHHHHHHHHHHHHHHHhc--CCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeE----EEEEChHH-HHhhCCEEE
Confidence 56655 34566677 8 99999999966666666667777777763 34678 89999976 788999988
Q ss_pred Eec
Q 030566 156 CFC 158 (175)
Q Consensus 156 ~~~ 158 (175)
.+.
T Consensus 357 ~l~ 359 (371)
T 3auy_A 357 NVK 359 (371)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.5e-06 Score=65.71 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=24.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETV 29 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~ 29 (175)
+..+.|.||+|+|||||++.++......
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999999876543
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.6e-06 Score=62.69 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=24.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G 31 (175)
..+.|.||+|+|||||+++++........
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~ 83 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNV 83 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999987754333
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=98.24 E-value=7.3e-07 Score=74.77 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=37.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~ 41 (175)
+|++++++|+|||||||++..|++.+.+..|+|.+.+.|+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 47899999999999999999999999999999999887753
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.24 E-value=5.6e-07 Score=74.39 Aligned_cols=32 Identities=25% Similarity=0.212 Sum_probs=27.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
+|++++|+||||||||||+++|+|. .+|++..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~ 199 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL---CGGKALN 199 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH---HCCEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEE
Confidence 4889999999999999999999985 4677654
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.20 E-value=7.9e-07 Score=66.53 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+|++++|+|++||||||+.+.|++.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999999865
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.19 E-value=7e-07 Score=71.50 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=36.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~ 41 (175)
|++++++|+||+||||++..+++.+.+..+++.+.+.+++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 7899999999999999999999999988899999887764
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=9.9e-07 Score=63.52 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~g 24 (175)
.+.+|+|||||||||++.+|.-
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999974
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.17 E-value=7.6e-07 Score=66.54 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
+++|+|+|||||||+++.|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999993
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.6e-05 Score=62.57 Aligned_cols=26 Identities=27% Similarity=0.629 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+..+.|.||+|+||||+++++++...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999998763
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.4e-06 Score=75.93 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=34.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcccc-ceeEEeecCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~-G~I~i~g~~~ 40 (175)
.|+.+.|+||||+|||||+++|+++.++.. |.+.+.+.+.
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence 378899999999999999999999999877 7777766543
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.17 E-value=6.1e-07 Score=71.60 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=26.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETV 29 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~ 29 (175)
+.+++|.|++|||||||++.|++++++.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 6899999999999999999999999763
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.15 E-value=8.8e-07 Score=66.24 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=26.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeec
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~ 38 (175)
..+++|+|++||||||+.+.|++.+ |...+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCC
Confidence 3579999999999999999998875 44555543
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.15 E-value=9.2e-07 Score=69.16 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+|++++|+|++||||||+.++|++.+.
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 489999999999999999999998653
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=98.15 E-value=9.8e-07 Score=66.28 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+|.+++|+||+||||||+.+.|+..++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 378999999999999999999998774
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.7e-06 Score=66.52 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=30.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEe
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~ 36 (175)
+|.+++|.|++||||||+++.|+..+.+ .+.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 4889999999999999999999999887 6666544
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.12 E-value=8.3e-07 Score=65.22 Aligned_cols=24 Identities=42% Similarity=0.724 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~g 24 (175)
+|.+++|+|++||||||+.+.|+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999999985
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.11 E-value=9.2e-06 Score=66.07 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl 25 (175)
+|+++.|.||+|||||||+..++..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999999885
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.09 E-value=6.7e-06 Score=66.99 Aligned_cols=37 Identities=11% Similarity=0.138 Sum_probs=28.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
+|+.+.|.|++|+|||||+..++.......+.|.+..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4899999999999999999988876544445555543
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=98.09 E-value=9.8e-06 Score=66.41 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=27.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeE-Eee
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-IVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~-i~g 37 (175)
+|+++.|.|++|+|||||+..++.......+.+. ++.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4889999999999999999888765543334443 443
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=8.4e-06 Score=65.23 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=23.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETV 29 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~ 29 (175)
..+.|.||+|+|||||++++++.....
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 468899999999999999999977554
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=2.2e-06 Score=71.88 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=30.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc------------cccceeEEeecC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE------------TVRRTMHIVNLD 39 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~------------~~~G~I~i~g~~ 39 (175)
.++|+|+||||||||++.++|... +.+|.+.++|.+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 689999999999999999999854 566888887754
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.06 E-value=2.4e-06 Score=70.28 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=29.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc-----------cccceeEEeecC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE-----------TVRRTMHIVNLD 39 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~-----------~~~G~I~i~g~~ 39 (175)
+++|+|+||||||||++.++|... +..|.+.++|.+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~ 227 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK 227 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE
Confidence 389999999999999999999865 456788777654
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.4e-06 Score=70.98 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=29.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcc-----------CccccceeEEee
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRH-----------CETVRRTMHIVN 37 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl-----------~~~~~G~I~i~g 37 (175)
|..++|+|+||+|||||+++|+|. ..|..|.+.+.+
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 567999999999999999999998 567777776644
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.1e-05 Score=62.09 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEe
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~ 36 (175)
+|.++.+.|+.||||||++--++.-+....-.+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 388999999999999997765554443322345443
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=1.6e-06 Score=66.54 Aligned_cols=33 Identities=27% Similarity=0.243 Sum_probs=26.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC---cccccee
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC---ETVRRTM 33 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~---~~~~G~I 33 (175)
+|.+++|+|++||||||+.+.|++.+ .++.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~ 50 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 50 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence 37899999999999999999998733 3444544
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=98.02 E-value=2.7e-06 Score=61.94 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+|..++|+|++|+|||||++.++|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47889999999999999999999864
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.2e-05 Score=65.08 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=30.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~ 39 (175)
+.++.++|++||||||++..|+..+.....++.+-.-|
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 56899999999999999999998887655566665444
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.98 E-value=4.3e-06 Score=61.03 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++++|++|||||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=3.9e-06 Score=63.35 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHH
Q 030566 3 YAQLVIGPAGSGKSTYCSSLY 23 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~ 23 (175)
.+.+|+|||||||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 478999999999999999985
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=4.4e-06 Score=60.84 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+|.++.|.|++||||||+.+.|+..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 478899999999999999999998764
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=5.7e-06 Score=59.56 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999653
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=3.7e-05 Score=61.88 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+|+++.|.||+|||||||+..++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 48999999999999999999988753
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.94 E-value=4.1e-06 Score=65.07 Aligned_cols=37 Identities=22% Similarity=0.155 Sum_probs=29.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
|.++.|+|++||||||+.+.|+..+. .+.+.+++...
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 67899999999999999999998764 24566666443
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.94 E-value=4.3e-06 Score=61.27 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccCcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
.++|+|++|+|||||++.++|..++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 4799999999999999999997433
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.93 E-value=3.7e-06 Score=62.22 Aligned_cols=27 Identities=19% Similarity=0.065 Sum_probs=23.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETV 29 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~ 29 (175)
.+++|+|++|||||||++.|.+.+++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 478999999999999999999987654
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.5e-05 Score=64.36 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCcc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+..+.|.||+|+|||||++.++.....
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 446899999999999999999987644
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=7.6e-06 Score=58.97 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987643
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.87 E-value=5.9e-06 Score=66.02 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.+++|+|+||||||||++.++|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4589999999999999999999974
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00016 Score=56.46 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.-+.|.||+|+|||||+++++....
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4588999999999999999998753
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=5e-05 Score=58.52 Aligned_cols=46 Identities=30% Similarity=0.423 Sum_probs=33.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPV 49 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~ 49 (175)
-++++.|+.|+|||||+..++..+. ..-++.+-+.+++.....+.+
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~ 60 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEP 60 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCC
Confidence 4789999999999999999997766 444677766666544433333
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=4.4e-06 Score=64.68 Aligned_cols=30 Identities=37% Similarity=0.387 Sum_probs=23.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcc---Ccccccee
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH---CETVRRTM 33 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl---~~~~~G~I 33 (175)
+++|.||+||||||+.+.|+.. ...+.|.+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 8999999999999999999844 33444444
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.85 E-value=3.7e-06 Score=67.88 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=28.5
Q ss_pred CeE--EEEECCCCCcHHHHHHHHHccCccccceeEEe
Q 030566 2 GYA--QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (175)
Q Consensus 2 Gei--~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~ 36 (175)
|++ +.+.||+|+||||+++++++.+.+..+.+.+.
T Consensus 44 g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 80 (340)
T 1sxj_C 44 GKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80 (340)
T ss_dssp TCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEE
Confidence 566 89999999999999999999887665554333
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.84 E-value=9.6e-06 Score=59.42 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987543
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=6.9e-05 Score=61.59 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=27.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
+|+++.|.|++|+|||||+..++.......+.+.+..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 4889999999999999999877654433344555443
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=1.2e-05 Score=59.41 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl 25 (175)
|.+++|+|++||||||+.+.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 678999999999999999999876
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.82 E-value=1.4e-05 Score=65.59 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=29.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc-----------cCccccceeEEee
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYR-----------HCETVRRTMHIVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~g-----------l~~~~~G~I~i~g 37 (175)
||-.++|+|.+|+|||||++.+++ -+.|..|.+.+.+
T Consensus 1 m~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 577899999999999999999998 2346667666544
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=1.3e-05 Score=58.12 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~g 24 (175)
|..++.|.|++||||||+.+.|+.
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHh
Confidence 345789999999999999999987
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.81 E-value=3.2e-06 Score=72.38 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
+.+|+|+||||||||+.+|..+
T Consensus 62 ~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 62 FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp EEEEEESHHHHHHHHTHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 8999999999999999999666
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.3e-05 Score=61.46 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=24.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccce
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRT 32 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~ 32 (175)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 48999999999999999999987765553
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=97.81 E-value=1.2e-05 Score=60.60 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~g 24 (175)
+-+++|.|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.79 E-value=1.2e-05 Score=57.65 Aligned_cols=19 Identities=42% Similarity=0.658 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 030566 4 AQLVIGPAGSGKSTYCSSL 22 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i 22 (175)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=1.4e-05 Score=59.06 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999854
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.79 E-value=1.3e-05 Score=68.51 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=28.6
Q ss_pred EEEECCCCCcHHHHHHHHHccCccccceeEEeecC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~ 39 (175)
+.|+||||+|||||+|+|++... .+.+.+++.+
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~ 99 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSD 99 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhH
Confidence 78999999999999999999875 5778777654
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.78 E-value=1.3e-05 Score=58.95 Aligned_cols=26 Identities=23% Similarity=0.255 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+|.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998644
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00013 Score=58.49 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl 25 (175)
+|+++.|.|++|+|||||+..++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4899999999999999999888754
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=97.77 E-value=1.3e-05 Score=62.34 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHccC
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.+++|+||||||||||.+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998754
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00031 Score=53.87 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-+.|.||+|+||||++++++...
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999998854
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=3.9e-06 Score=62.83 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=25.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccceeE
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMH 34 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~ 34 (175)
+++|.|++||||||+++.|+..+.+....+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~ 32 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA 32 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 6899999999999999999988765433443
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=1.5e-05 Score=64.99 Aligned_cols=31 Identities=26% Similarity=0.229 Sum_probs=26.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc--cCccccceeE
Q 030566 4 AQLVIGPAGSGKSTYCSSLYR--HCETVRRTMH 34 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~g--l~~~~~G~I~ 34 (175)
.++|+|++|||||||++.++| ++++.+|.++
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 589999999999999999999 5677667654
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.76 E-value=1.7e-05 Score=62.92 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=27.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
|.++.|.||+||||||+.+.++.-.+ .|.+.++.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 67899999999999999999987553 35566654
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=1.9e-05 Score=58.41 Aligned_cols=30 Identities=27% Similarity=0.136 Sum_probs=25.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
.+++|+|++||||||+.+.|+.. |...++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 57999999999999999999985 5555553
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=1.8e-05 Score=58.05 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
++.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999997643
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.75 E-value=1.7e-05 Score=58.09 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.++.|+|++||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998654
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=97.74 E-value=1.7e-05 Score=65.29 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=30.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
.-++|+|++||||||+++.+++...+..+.|.+.+
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 45789999999999999999998877788887754
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.73 E-value=1.4e-05 Score=58.24 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998764
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=2.1e-05 Score=58.33 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 37799999999999999999999876
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.72 E-value=2.1e-05 Score=58.48 Aligned_cols=27 Identities=33% Similarity=0.308 Sum_probs=24.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCcc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
|.+++|.|+.||||||+.+.|+..+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 779999999999999999999986654
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.71 E-value=1.8e-05 Score=57.81 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.++.|.|++||||||+.+.++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999998543
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.69 E-value=2.1e-05 Score=57.88 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
|.+++|.|++||||||+.+.|+..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999998644
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00033 Score=58.21 Aligned_cols=115 Identities=10% Similarity=0.133 Sum_probs=63.2
Q ss_pred EEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHHHHHH
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDN 84 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 84 (175)
+-|.||+|+|||+|.|++++..... -+.+.+-+. + .... .+..+.
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~~~~--f~~v~~s~l----------------~-----------sk~v------Gese~~ 229 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHTDCK--FIRVSGAEL----------------V-----------QKYI------GEGSRM 229 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHTCE--EEEEEGGGG----------------S-----------CSST------THHHHH
T ss_pred eEEeCCCCCCHHHHHHHHHHhhCCC--ceEEEhHHh----------------h-----------cccc------chHHHH
Confidence 6789999999999999999975431 122222111 0 0000 122344
Q ss_pred HHHHHHHHhhccCCCCEEEEeCC-----Ccccccc-----cchHHHHHHHHHHh--CCCcEEEEEeeeccchhhhhc---
Q 030566 85 LDDWLAEELDNYLDDDYLVFDCP-----GQIELFT-----HVPVLRNFVDHLKS--RNFNVCAVYLLDSQVCIRFRT--- 149 (175)
Q Consensus 85 ~~~~l~~~l~~~~~p~lliLDEP-----~~~~~~~-----~~~~~~~~l~~l~~--~g~tvli~~l~~sH~~~~~~~--- 149 (175)
.+..+..+-.. .|-++++||- .+..-.. ....+.++|.++.. ....| +++.+|++.+.+..
T Consensus 230 vr~lF~~Ar~~--aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V--~vIaATNrpd~LDpAll 305 (405)
T 4b4t_J 230 VRELFVMAREH--APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNI--KIIMATNRLDILDPALL 305 (405)
T ss_dssp HHHHHHHHHHT--CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCE--EEEEEESCSSSSCHHHH
T ss_pred HHHHHHHHHHh--CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCe--EEEeccCChhhCCHhHc
Confidence 55566666667 8999999998 1111111 11234556666632 22223 22778887766432
Q ss_pred ---CCCceeEec
Q 030566 150 ---LPPCIVCFC 158 (175)
Q Consensus 150 ---~~~~~~~~~ 158 (175)
..|+.+.+.
T Consensus 306 RpGRfD~~I~i~ 317 (405)
T 4b4t_J 306 RPGRIDRKIEFP 317 (405)
T ss_dssp STTSSCCEEECC
T ss_pred CCCcCceEEEcC
Confidence 455555554
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=2.4e-05 Score=58.34 Aligned_cols=25 Identities=32% Similarity=0.204 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
|-+++|.|+.||||||+.+.|+..+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 7799999999999999999998654
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.66 E-value=2.3e-05 Score=58.58 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
++|+||+|||||||++.|....+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999976543
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=2.2e-05 Score=57.50 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
|+-+++|+|++||||||+.+.|+..+
T Consensus 1 M~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 1 MAPKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp -CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46689999999999999999997643
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.64 E-value=3.3e-05 Score=56.85 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=23.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETV 29 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~ 29 (175)
+++|+|++|||||||+..|+..++..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 78999999999999999999887653
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=3.3e-05 Score=57.40 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHccC
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.+++|.|++||||||+.+.|++.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999999998854
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.61 E-value=2.4e-05 Score=57.74 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+-+++|.|+.||||||+.+.|+..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998754
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.60 E-value=2.8e-05 Score=60.82 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.++|+|++|||||||++.++|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999754
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=3.6e-05 Score=56.29 Aligned_cols=25 Identities=36% Similarity=0.646 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.+++|.|+.||||||+.+.++..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999997643
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.60 E-value=2.6e-05 Score=63.84 Aligned_cols=29 Identities=34% Similarity=0.465 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHccCcccccee
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTM 33 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~~~~G~I 33 (175)
++|+|++|+|||||++.|.|...+..+.+
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~~~~~~~~ 68 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTDLYPERVI 68 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCCC------
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 78999999999999999988765544443
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=3.5e-05 Score=57.51 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
|-+++|.|+.||||||+.+.|+..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 7789999999999999999998654
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=2.8e-05 Score=68.60 Aligned_cols=35 Identities=26% Similarity=0.276 Sum_probs=29.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCcc--ccceeEEee
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVN 37 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~--~~G~I~i~g 37 (175)
|..++|+|+||||||||++.+++...+ ..|+| .+|
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g 45 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEG 45 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGT
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCC
Confidence 678999999999999999999987664 67877 344
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.58 E-value=2.5e-05 Score=56.93 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=18.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+.++.|.|++||||||+.+.|+..+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999986543
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.58 E-value=3.9e-05 Score=56.47 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~g 24 (175)
.++++|++|+|||||++.+++
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999999997
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=3.9e-05 Score=55.36 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
..+++|.|+.||||||+.+.|+..+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998754
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=3.5e-05 Score=56.39 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988654
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=3.5e-05 Score=57.16 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~g 24 (175)
.++++|++|||||||++.+++
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999987
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.57 E-value=3.4e-05 Score=59.56 Aligned_cols=23 Identities=26% Similarity=0.627 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+.|.||+|+|||||++++++...
T Consensus 48 vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999764
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=4.5e-05 Score=60.18 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=28.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEe
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~ 36 (175)
..+.|.||+|+||||+++++++...+.++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence 4789999999999999999999988777765443
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.56 E-value=3.4e-05 Score=63.24 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHH
Q 030566 3 YAQLVIGPAGSGKSTYCSSLY 23 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~ 23 (175)
.+.+|+|+|||||||++.+|.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999986
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=3.8e-05 Score=62.89 Aligned_cols=26 Identities=35% Similarity=0.606 Sum_probs=23.2
Q ss_pred CeE--EEEECCCCCcHHHHHHHHHccCc
Q 030566 2 GYA--QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei--~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
|++ ++|+|++||||||+.++|++.+.
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 666 99999999999999999998754
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00045 Score=55.48 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-+.|.||.|+|||||+++++...
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHT
T ss_pred eEEEECCCCccHHHHHHHHHHHc
Confidence 47899999999999999999876
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.52 E-value=5.7e-05 Score=56.15 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+-+++|.|+.||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998644
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00049 Score=58.16 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+.|.||+|+|||+|.+++++...
T Consensus 246 ILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 246 ILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp EEECSCTTSSHHHHHHHHHHHHT
T ss_pred eEeeCCCCCcHHHHHHHHHhccC
Confidence 67899999999999999998754
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00043 Score=58.15 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+.|.||+|+|||+|.+++++...
T Consensus 218 vLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 67899999999999999998754
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=6.2e-05 Score=56.81 Aligned_cols=25 Identities=32% Similarity=0.576 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
|-+++|+|+.||||||+.+.|+..+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 6689999999999999999998754
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00057 Score=55.57 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHccC
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.-+.|.||+|+|||||+++++...
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999865
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=5.5e-05 Score=57.43 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.+++|.|+.||||||+.+.|+..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998644
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=97.49 E-value=6.1e-05 Score=56.52 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999996543
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.48 E-value=6.2e-05 Score=55.12 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+++|.|+.||||||+.+.++..++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987653
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00075 Score=56.53 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+.|.||+|+|||+|.+++++...
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998754
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=6.8e-05 Score=54.08 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHccC
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
++++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999997643
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.47 E-value=8.2e-05 Score=59.11 Aligned_cols=26 Identities=27% Similarity=0.617 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+..+.|.||+|+|||||++++++...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhC
Confidence 45689999999999999999999764
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=7.8e-05 Score=55.36 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
..+++|.|+.||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998654
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=5.7e-05 Score=57.11 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.++.|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998654
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=7.2e-05 Score=56.16 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997654
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=8.6e-05 Score=57.81 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998764
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.44 E-value=8.2e-05 Score=53.43 Aligned_cols=23 Identities=43% Similarity=0.323 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+++|.|+.||||||+.+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998743
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.43 E-value=7e-05 Score=54.74 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.++++|+.|||||||++.+++-..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998653
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0013 Score=55.08 Aligned_cols=28 Identities=11% Similarity=0.303 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+|+++.|.|++|+|||||+..++.....
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999988876543
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=7.9e-05 Score=58.67 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0006 Score=57.35 Aligned_cols=25 Identities=28% Similarity=0.589 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccCcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
.+.|.||+|+|||||.++|+.....
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3789999999999999999998754
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=97.42 E-value=9.8e-05 Score=56.39 Aligned_cols=25 Identities=36% Similarity=0.612 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
..++.|+||+||||||..+.|+..+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998654
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00077 Score=56.49 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=21.0
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+-|.||+|+|||+|.+++++...
T Consensus 219 vLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp EEEESSTTTTHHHHHHHHHHHHT
T ss_pred CceECCCCchHHHHHHHHHHHhC
Confidence 77999999999999999998754
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=8.3e-05 Score=52.69 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|||||||++.+++-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00013 Score=53.33 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++|+|++|+|||||++.+++-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999766553
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=9.4e-05 Score=57.17 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+++|.|+.||||||+.+.|+..+.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 799999999999999999988543
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.38 E-value=9.9e-05 Score=52.73 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37999999999999999998864
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0001 Score=52.35 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|||||||++.+++-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0001 Score=55.10 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl 25 (175)
.+++|+|+.||||||+.+.++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999875
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.37 E-value=9.8e-05 Score=52.04 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+++-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00012 Score=56.39 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+-+++|.|+.||||||+.+.|+..+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999997543
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0001 Score=52.05 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|||||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=7.5e-05 Score=53.02 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
-++++|+.|+|||||++.++|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 378999999999999999987543
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00011 Score=56.06 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~g 24 (175)
|+.+++.||+||||||++..+..
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHh
Confidence 78999999999999998887754
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=7.5e-05 Score=54.43 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++++|++|+|||||++.+++-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999886
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00011 Score=55.75 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997644
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0001 Score=52.05 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|||||||++.+++-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.35 E-value=7e-05 Score=62.17 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+|+.++|+||+|+|||||++.|++.+.
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 599999999999999999999998764
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00011 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998754
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=97.34 E-value=9e-05 Score=52.14 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|||||||++.+++-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998753
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00011 Score=52.21 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998864
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00013 Score=57.48 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~g 24 (175)
..++.|.|++||||||+.+.|+.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999986
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.34 E-value=9.8e-05 Score=52.99 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|||||||++.+++-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998753
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00042 Score=66.64 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=28.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
+|+++.|.||+|+|||||+..++.......+.+.+
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~Vly 765 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAF 765 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEE
Confidence 48999999999999999999998876655555544
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.33 E-value=9.6e-05 Score=60.18 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHccC
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-.++++|+||+|||||++.++|..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999875
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00011 Score=52.01 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00012 Score=52.13 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0007 Score=56.79 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+-|.||+|+|||+|.+++++...
T Consensus 218 vLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 218 ALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEECcCCCCHHHHHHHHHHHhC
Confidence 67899999999999999999754
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00012 Score=51.86 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00012 Score=52.49 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|||||||++.+++-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998653
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00012 Score=52.54 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|||||||++.+++-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998754
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00015 Score=52.03 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl 25 (175)
-.++++|+.|||||||++.+++-
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00011 Score=52.17 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00015 Score=52.74 Aligned_cols=25 Identities=28% Similarity=0.378 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccCcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
-++++|+.|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 3799999999999999999987653
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00011 Score=53.69 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+++-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.28 E-value=7.5e-05 Score=53.95 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~g 24 (175)
.++++|++|||||||++.+++
T Consensus 20 ~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999974
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00016 Score=54.75 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
++.|+||+||||+|..+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998754
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00013 Score=57.58 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~g 24 (175)
-+++|.|+.||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00012 Score=52.44 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++++|+.|+|||||++.+++-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999876
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00012 Score=53.31 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 48999999999999999998864
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00014 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00014 Score=52.92 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999863
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.26 E-value=7.5e-05 Score=59.34 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=19.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+-++||.|++||||||+.+.++..+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45899999999999999999987554
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00015 Score=51.41 Aligned_cols=22 Identities=18% Similarity=0.372 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00014 Score=54.90 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
|-.++|+|+.||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999998754
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00015 Score=57.80 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++|+|++|+|||||++.++|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00012 Score=53.05 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999998854
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00017 Score=51.75 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00015 Score=53.00 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++|+|+.|+|||||++.+++-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998843
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00015 Score=54.50 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997643
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00016 Score=51.42 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++++|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999763
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00016 Score=52.42 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++|+|+.|+|||||++.+++-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00017 Score=57.52 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+++++|+.|||||||++.+.|--
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999853
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00015 Score=59.66 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++|+|++|+|||||++.+++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999999985
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00017 Score=50.96 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl 25 (175)
++++|+.|+|||||++.+++-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999763
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00015 Score=54.35 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+-+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998754
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00016 Score=56.30 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|++|||||||++.++|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999974
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00017 Score=52.46 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|||||||++.+++-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00022 Score=54.37 Aligned_cols=25 Identities=32% Similarity=0.670 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+..+.|+|+.||||||+.+.|+..+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998654
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00018 Score=51.47 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00018 Score=51.82 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|||||||++.+++-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 47999999999999999998743
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00019 Score=51.57 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00016 Score=51.67 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00023 Score=57.56 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
..+++|+||+|||||||.+.|+..+.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999998654
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00024 Score=53.56 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
||.++++=|+-||||||+++.|+..+.
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 789999999999999999999998764
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0025 Score=62.23 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=27.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEe
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~ 36 (175)
+|+++.|.||+|+|||||...++.-.....+.+.+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi 1461 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI 1461 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 478999999999999999998876544434445443
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00015 Score=61.44 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=29.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
+|+..+|+|++|+|||||++.|+.-.....+.+.+
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 58999999999999999999998876655566655
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0002 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+++-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999865
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00021 Score=51.32 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0013 Score=53.13 Aligned_cols=25 Identities=24% Similarity=0.285 Sum_probs=19.1
Q ss_pred CeEEEEECCCCCcHHHHHH-HHHccCc
Q 030566 2 GYAQLVIGPAGSGKSTYCS-SLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk-~i~gl~~ 27 (175)
| ++-|.||+|+|||||+- +++...+
T Consensus 29 G-iteI~G~pGsGKTtL~Lq~~~~~~~ 54 (333)
T 3io5_A 29 G-LLILAGPSKSFKSNFGLTMVSSYMR 54 (333)
T ss_dssp E-EEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred C-eEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6 78999999999999954 4444443
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00016 Score=53.40 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++++|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4799999999999999999764
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00022 Score=52.53 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+++-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00022 Score=55.51 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|+|++|||||||++.++|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999854
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00022 Score=52.44 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|||||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00021 Score=53.53 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+++++|+.|||||||++.+++-.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00019 Score=51.88 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00022 Score=58.03 Aligned_cols=25 Identities=20% Similarity=0.537 Sum_probs=22.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.+++|.||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999998764
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00013 Score=61.25 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=32.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~ 41 (175)
.+++++|++|+||||++..|++.+.....++.+-.-|+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 489999999999999999999988765566777665543
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00023 Score=51.93 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00022 Score=51.69 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+++-.
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00023 Score=51.35 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00037 Score=52.90 Aligned_cols=28 Identities=32% Similarity=0.394 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+|-++++.|+.||||||+++.|+..+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3889999999999999999999887654
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00023 Score=51.87 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+++-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00033 Score=56.97 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+.+++|+||.|||||||...|+..+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 56899999999999999999998763
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00023 Score=54.93 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|+|+.|||||||++.++|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00021 Score=51.98 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00018 Score=56.26 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|+|++|+|||||++.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987753
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00021 Score=52.22 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|||||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00021 Score=56.03 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|..|||||||++.++|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0003 Score=57.25 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=29.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~ 41 (175)
-+++|+|+.|+|||||++.+++.+....-++.+-..++.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~ 118 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPS 118 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 479999999999999999999876544445665555543
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00023 Score=54.73 Aligned_cols=28 Identities=21% Similarity=0.180 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+|-++.+.|+.||||||+++.|+..++.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3789999999999999999999887653
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00026 Score=54.65 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=24.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+|.++++.|++||||||+++.|+..+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3789999999999999999999887654
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00025 Score=51.07 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999853
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00027 Score=58.88 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
..++.|+|++||||||+.+.++...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999987643
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00022 Score=52.23 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00028 Score=51.92 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00034 Score=56.39 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
++.+++|.||+|||||||...|+.-++
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 356899999999999999999987653
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00028 Score=51.41 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00037 Score=50.13 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
..+.|.||.|+|||||++.++..+.
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999988754
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00028 Score=51.98 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++|+|++|+|||||++.++|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00025 Score=52.39 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+++-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 47999999999999999998854
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00026 Score=51.91 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0003 Score=51.45 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00033 Score=53.25 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=25.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+|-++.+-|+.||||||+++.|+..++.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4889999999999999999999887754
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00026 Score=51.04 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~g 24 (175)
.++++|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 479999999999999999984
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00032 Score=54.89 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G 31 (175)
.++++|.+|+|||||++.++|-.....|
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~~~~~~ 128 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKRASSVG 128 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred heEEeCCCCCCHHHHHHHHhcccccccC
Confidence 6899999999999999999987654433
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00031 Score=50.50 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00031 Score=51.44 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00031 Score=51.28 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++++|+.|+|||||++.+++-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0026 Score=57.20 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+.|.||+|+|||||.|++++...
T Consensus 241 ILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 241 ILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp EEEECCTTSCHHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999998764
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00022 Score=52.07 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+++-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998765
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00029 Score=55.79 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|+|+.|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00027 Score=51.69 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++|+|+.|+|||||++.+++-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 37999999999999999998754
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00031 Score=51.04 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+++-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00029 Score=52.12 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00032 Score=51.46 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999875
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00029 Score=51.24 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++++|+.|+|||||++.+++-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999853
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00036 Score=53.36 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+|-+++|-|+.||||||+++.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 477899999999999999999987764
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00027 Score=52.63 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|++|+|||||++.+++-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999998764
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00033 Score=51.63 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00033 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998643
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00031 Score=51.29 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|+|+.|+|||||++.+++-.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00037 Score=53.09 Aligned_cols=28 Identities=32% Similarity=0.557 Sum_probs=25.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+|.++.+-|+.||||||+++.|+..+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3889999999999999999999987765
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00032 Score=52.98 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+++-.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998853
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00029 Score=52.03 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00036 Score=53.63 Aligned_cols=38 Identities=11% Similarity=0.030 Sum_probs=26.1
Q ss_pred Ce-EEEEECCCCCcHHHHHHHHHccCccccc-eeEEeecCc
Q 030566 2 GY-AQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDP 40 (175)
Q Consensus 2 Ge-i~~liG~NGsGKSTLlk~i~gl~~~~~G-~I~i~g~~~ 40 (175)
|. .+.+.|+.|+||||++-.++....- .| .+.+...++
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~-~G~~V~v~d~D~ 44 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLR-QGVRVMAGVVET 44 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH-CCCCEEEEEeCC
Confidence 44 3788999999999996666655432 45 465555554
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00014 Score=54.40 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|||||||++.++|-.
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00038 Score=51.81 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++|+|+.|+|||||++.+++-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00039 Score=51.13 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
-++++|+.|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 479999999999999999998644
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00028 Score=51.11 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++++|+.|+|||||++.+++-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0025 Score=54.14 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-+.|.||+|+|||+++++++...
T Consensus 240 ~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred cEEEECcCCCCHHHHHHHHHHHh
Confidence 37899999999999999998765
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0004 Score=50.99 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00027 Score=50.80 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999874
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00047 Score=52.08 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl 25 (175)
|..+.|+||+|||||||...++.-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 677999999999999999998764
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00042 Score=51.59 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccCcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
.+.|.||+|+|||||++.++.....
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 7899999999999999999876543
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00041 Score=50.68 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999988764
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00036 Score=51.80 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00038 Score=52.05 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00036 Score=52.07 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998853
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0022 Score=61.77 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=26.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
+|+++.|.||+|+|||||+-.++.......+.+.+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vly 416 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAF 416 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEE
Confidence 48899999999999999988876654433344443
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00055 Score=55.05 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
..+++|.||+|||||||...++....
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 35789999999999999999987653
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00043 Score=51.41 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.+++-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00026 Score=51.12 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999865
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00041 Score=53.81 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
|-+++|.|+.||||||+++.|+..++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999988763
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00036 Score=54.69 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|..|||||||++.++|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999865
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00061 Score=52.17 Aligned_cols=28 Identities=25% Similarity=0.116 Sum_probs=24.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+|-++++.|+.||||||+.+.++..+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3778999999999999999999887654
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00041 Score=51.22 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+++-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998743
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00089 Score=47.23 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=22.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccCcccc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVR 30 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~ 30 (175)
-+.|.||+|+|||++.++|........
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~ 52 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQ 52 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccC
Confidence 478999999999999999988765433
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00038 Score=51.15 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++++|+.|+|||||++.+++-
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999753
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00047 Score=51.73 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|+|..|+|||||++.++.-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00043 Score=58.12 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++|+|++|+|||||++.++|-
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999884
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00051 Score=53.34 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.++|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999854
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00024 Score=52.94 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|||||||++.+++-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00053 Score=50.72 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=20.3
Q ss_pred CCeEEEEECCCCCcHHHHH-HHHHcc
Q 030566 1 MGYAQLVIGPAGSGKSTYC-SSLYRH 25 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLl-k~i~gl 25 (175)
+|.++.+.||.||||||++ +.+...
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4889999999999999997 544433
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00048 Score=50.30 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999865
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0092 Score=45.92 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=25.8
Q ss_pred CCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccc
Q 030566 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQV 143 (175)
Q Consensus 98 ~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~ 143 (175)
+.+++++||- .++. + +.++++.+.+.|..| ++..++
T Consensus 90 ~~dvViIDEa---QF~~--~-v~el~~~l~~~gi~V----I~~GL~ 125 (234)
T 2orv_A 90 GVAVIGIDEG---QFFP--D-IVEFCEAMANAGKTV----IVAALD 125 (234)
T ss_dssp TCSEEEESSG---GGCT--T-HHHHHHHHHHTTCEE----EEECCS
T ss_pred cCCEEEEEch---hhhh--h-HHHHHHHHHhCCCEE----EEEecc
Confidence 7899999998 1111 1 445777777789999 777766
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.003 Score=50.83 Aligned_cols=26 Identities=8% Similarity=-0.024 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
|..+.|.||.|+|||++++.++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 56788999999999999999998764
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0005 Score=49.44 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCcc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
..+.|.||.|+|||||++.++.....
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999887643
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0015 Score=49.74 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
+|.+..+.|+-||||||.+--++--+.-..-++.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli 61 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIV 61 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence 38899999999999998765554433332333444
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00053 Score=53.40 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++++|+.|+|||||++.++|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0033 Score=61.43 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=26.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
+|+++.|.||+|+|||||+..++.......+.+.+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vly 416 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAF 416 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 48899999999999999998887655443344433
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0006 Score=52.52 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.+||+|+.||||||+.+.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999997644
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00063 Score=51.34 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++|+|++|+|||||++.++|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00056 Score=54.63 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.3
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+.|.||+|+||||+++++++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999864
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00071 Score=54.45 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=25.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc----cCccccceeEE
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYR----HCETVRRTMHI 35 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~g----l~~~~~G~I~i 35 (175)
|.-+.|.|++|+||||+...+.+ ++..+...|..
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~ 181 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIRE 181 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEE
Confidence 67799999999999999999987 44444444443
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00058 Score=50.53 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47999999999999999998653
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00069 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++|+|+.|+|||||++.+++-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998753
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0004 Score=50.52 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~g 24 (175)
-++++|+.|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999965
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00026 Score=51.99 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=4.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999876
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00063 Score=50.45 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~g 24 (175)
.++++|+.|+|||||++.+++
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 489999999999999988875
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00077 Score=50.44 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00076 Score=49.96 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+++-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.001 Score=49.17 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~g 24 (175)
|.-+.|.|++|+|||||...+..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 66789999999999999887754
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.01 Score=50.31 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+|+++.|.|++|+|||||+--++--.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHH
Confidence 48999999999999999987776543
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00042 Score=53.56 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.|.||+|+|||||++++++..
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 5689999999999999999854
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0011 Score=48.78 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.+.|.||.|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998765
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0011 Score=52.88 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~g 24 (175)
+|+++.|.|++|||||||+..++.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999998875
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0013 Score=53.01 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=27.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
|..+.|.||+|+|||||++.++.........+.+.+
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 357899999999999999999988764333444443
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00094 Score=55.32 Aligned_cols=23 Identities=30% Similarity=0.255 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|+|.+++|||||++.++|--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999999863
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0054 Score=51.45 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+|+.+.|.|++|+|||||+-.++.-.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 48999999999999999987776543
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0011 Score=55.38 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++|+|++|+|||||++.++|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0017 Score=51.30 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.++++|.+|+|||||++.+.|-..
T Consensus 122 ~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 122 RALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred eEEEEecCCCchHHHHHHHhcCce
Confidence 589999999999999999998754
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0056 Score=54.48 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.+.+.||+|+|||++.++++....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 488999999999999999998863
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0015 Score=57.25 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
|.++.|.|.+||||||+.+.|+..+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 6689999999999999999998865
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0018 Score=49.04 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=20.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLY 23 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~ 23 (175)
+|+++.|.|++|+|||||+--++
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Confidence 48999999999999999987654
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0013 Score=54.67 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHccC
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.+++|.||+|||||||.+.|+..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998654
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0019 Score=51.38 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl 25 (175)
--++|+|+.|+|||||++.+.+-
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999998775
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0014 Score=51.79 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.+.|.||+|+|||+|.++|+...
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46677999999999999999865
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=96.46 E-value=0.00096 Score=49.86 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHH-HHcc
Q 030566 4 AQLVIGPAGSGKSTYCSS-LYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~-i~gl 25 (175)
.++++|+.|+|||||++. +.|-
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 489999999999999998 5554
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0016 Score=50.54 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-+.|.||+|+|||||+++++...
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 47889999999999999998863
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 175 | ||||
| d1yrba1 | 244 | c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09 | 1e-26 |
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Score = 98.9 bits (245), Expect = 1e-26
Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 6/140 (4%)
Query: 6 LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
+ +G AGSGK+T R+ E + VNLD + Y ++D+RE +++E++M E
Sbjct: 4 VFVGTAGSGKTTLTGEFGRYLEDNYKV-AYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62
Query: 66 LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125
G GPNG ++ + L + +++L + L ++DY++ D PGQ+E F +++
Sbjct: 63 -GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMEN 121
Query: 126 LKSRNFNVCAVYLLDSQVCI 145
L VY+ D ++
Sbjct: 122 L----PYPLVVYISDPEILK 137
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 175 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.98 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.97 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.97 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.97 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.97 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.96 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.96 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.71 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.55 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.67 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 98.59 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.52 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 98.33 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 98.29 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 98.28 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 98.26 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 98.2 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 98.15 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.15 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.13 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 98.11 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.11 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 98.1 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 98.07 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 98.02 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 98.02 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.01 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 98.0 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.98 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.97 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.97 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.97 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.97 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.96 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.95 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.94 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.94 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.94 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 97.93 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.9 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 97.89 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.88 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.86 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.85 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.84 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.83 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.81 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.8 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.79 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.76 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.76 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.75 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.75 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 97.73 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.73 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 97.73 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.71 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.71 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.68 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 97.67 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.67 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 97.67 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 97.66 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 97.65 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.65 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.64 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 97.62 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.62 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.62 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 97.61 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 97.61 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 97.6 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.59 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 97.58 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.58 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 97.57 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 97.57 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 97.57 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 97.57 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.56 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 97.56 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.56 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.56 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 97.55 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.54 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 97.54 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.52 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 97.51 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 97.5 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.5 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.5 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 97.48 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 97.45 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 97.44 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 97.43 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 97.42 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 97.42 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 97.39 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.37 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 97.34 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 97.34 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 97.32 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 97.32 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 97.31 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 97.31 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 97.31 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 97.31 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 97.3 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 97.29 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 97.29 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 97.28 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 97.28 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 97.27 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 97.27 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 97.24 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 97.23 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 97.21 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 97.18 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 97.18 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 97.18 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.17 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 97.14 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 97.13 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 97.12 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 97.12 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 97.1 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 97.09 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 97.09 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 97.08 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 97.08 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 97.06 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 97.06 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 97.04 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 97.03 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 97.02 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 97.0 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 97.0 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.98 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 96.98 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 96.95 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.93 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 96.92 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.91 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 96.9 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 96.9 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.89 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.88 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 96.87 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 96.86 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.85 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 96.84 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 96.84 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 96.83 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 96.82 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 96.82 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 96.82 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.8 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 96.79 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 96.78 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.78 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 96.77 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 96.76 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 96.76 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 96.74 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 96.74 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.74 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.73 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 96.72 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 96.72 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 96.72 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 96.71 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 96.67 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 96.66 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.65 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 96.65 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 96.64 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 96.63 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 96.62 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 96.6 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 96.6 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 96.6 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.59 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 96.57 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 96.56 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 96.55 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 96.54 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 96.53 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 96.51 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 96.47 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 96.47 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 96.46 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 96.44 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 96.44 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.43 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 96.41 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 96.39 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 96.39 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 96.36 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 96.35 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 96.33 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 96.31 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 96.28 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 96.25 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 96.22 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 96.09 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 96.05 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 96.04 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 96.01 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 95.95 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 95.92 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 95.89 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 95.85 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 95.85 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 95.72 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.71 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 95.69 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 95.68 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 95.62 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 95.56 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 95.54 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 95.53 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 95.44 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 95.41 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 95.18 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 95.01 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 94.91 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 94.79 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 94.66 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 94.64 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 94.61 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 94.57 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 94.56 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 94.46 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 94.42 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 94.42 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 94.35 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 94.35 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 94.26 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 94.21 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 94.19 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 93.5 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 93.14 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 93.12 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 93.1 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 93.1 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 93.08 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 93.04 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 92.71 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 92.69 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 92.59 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 92.59 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 92.35 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 92.3 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 91.97 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 91.74 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 91.62 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 91.09 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 90.54 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 90.38 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 89.78 | |
| d1w7ja2 | 730 | Myosin S1, motor domain {Chicken (Gallus gallus), | 89.67 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 88.29 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 87.97 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 87.87 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 87.85 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 86.21 | |
| d1gg4a4 | 214 | UDP-murNac-tripeptide D-alanyl-D-alanine-adding en | 85.02 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 84.79 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 84.25 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 81.36 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.4e-37 Score=239.05 Aligned_cols=159 Identities=16% Similarity=0.090 Sum_probs=110.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----ccCCCCc-------cCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYPV-------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~~-------~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. +.+++.+ .+++++++.
T Consensus 25 ~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~ 104 (232)
T d2awna2 25 EGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK 104 (232)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC---------------------
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHHHcCCCH
Confidence 599999999999999999999999999999999999987532 2233333 334444432
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH-hC
Q 030566 59 ------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SR 129 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-~~ 129 (175)
..++++.+++....... ..++| |+||.++||+++. +|++++||||+...+......+++++++++ +.
T Consensus 105 ~~~~~~v~~~l~~~~l~~~~~~~--~~~LSGGqkQRvaiAraL~~--~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 180 (232)
T d2awna2 105 EVINQRVNQVAEVLQLAHLLDRK--PKALSGGQRQRVAIGRTLVA--EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 180 (232)
T ss_dssp CHHHHHHHHHHHHC-----------------------CHHHHHHT--CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 23455666665433222 23444 8999999999999 999999999966666666777888999884 56
Q ss_pred CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|.|| +++||+++++..+||++++|+.|..+-+++
T Consensus 181 g~ti----i~vTHd~~~a~~~~dri~vm~~G~iv~~G~ 214 (232)
T d2awna2 181 GRTM----IYVTHDQVEAMTLADKIVVLDAGRVAQVGK 214 (232)
T ss_dssp CCEE----EEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred CCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEEeC
Confidence 9999 999999999999999999999998765543
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.6e-37 Score=239.57 Aligned_cols=161 Identities=14% Similarity=0.106 Sum_probs=129.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------------ccCCCCccCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------------~~~~~~~~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ++....+.+++.+++.
T Consensus 25 ~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~ 104 (229)
T d3d31a2 25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD 104 (229)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHhhccccH
Confidence 599999999999999999999999999999999999987532 2233444556666654
Q ss_pred ---HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH-hCCCcEE
Q 030566 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVC 134 (175)
Q Consensus 59 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~-~~g~tvl 134 (175)
..++++.+++..........-+..++||.++||++.. +|++|+||||+...+......+++++++++ +.|.||
T Consensus 105 ~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~--~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~ti- 181 (229)
T d3d31a2 105 PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVT--NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTV- 181 (229)
T ss_dssp HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTS--CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEE-
T ss_pred HHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhc--cCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEE-
Confidence 3567777777655433332234449999999999999 999999999976666777778888999985 459999
Q ss_pred EEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 135 AVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 135 i~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++||+++++..+||++++|..|..+-+++
T Consensus 182 ---i~vtHd~~~~~~~~drv~vm~~G~iv~~g~ 211 (229)
T d3d31a2 182 ---LHITHDQTEARIMADRIAVVMDGKLIQVGK 211 (229)
T ss_dssp ---EEEESCHHHHHHHCSEEEEESSSCEEEEEC
T ss_pred ---EEEcCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999988775544
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=5.6e-38 Score=243.46 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=125.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-----ccCCCCc-------cCCcchhcc----------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYPV-------AMDIRELIS---------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-----~~~~~~~-------~~~~~~~~~---------- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. +.+++.+ .+++.+++.
T Consensus 31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~ 110 (239)
T d1v43a3 31 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK 110 (239)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCH
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHHcCCCH
Confidence 599999999999999999999999999999999999987432 2233333 334444332
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHHHH--HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-C
Q 030566 59 ------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-R 129 (175)
Q Consensus 59 ------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~ 129 (175)
..++++.+++....... ...+| ++||.++||+++. +|++|+||||+...+...+..++++++++++ .
T Consensus 111 ~~~~~~~~~~l~~~~l~~~~~~~--~~~LSGGq~QRvaiAraL~~--~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~ 186 (239)
T d1v43a3 111 DEIDKRVRWAAELLQIEELLNRY--PAQLSGGQRQRVAVARAIVV--EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL 186 (239)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSC--TTTCCSSCHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhhhcCC--hhhCCHHHHHHHHHHhhhcc--CCCceeecCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 24566666665433222 23344 8999999999999 9999999999766667777888889999865 4
Q ss_pred CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|.|| +++||+++++.++||++++|..|..+-+++
T Consensus 187 g~ti----i~vTHd~~~a~~~~dri~vm~~G~iv~~G~ 220 (239)
T d1v43a3 187 KVTT----IYVTHDQVEAMTMGDRIAVMNRGQLLQIGS 220 (239)
T ss_dssp TCEE----EEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred CCeE----EEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 9999 999999999999999999999998765544
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.7e-37 Score=239.39 Aligned_cols=161 Identities=16% Similarity=0.098 Sum_probs=126.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------------ccCCCCccCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------------~~~~~~~~~~~~~~~~--------- 58 (175)
+||++||+||||||||||+|+|+|+++|++|+|.++|+++.. +...+.+.+++.+++.
T Consensus 27 ~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~ 106 (238)
T d1vpla_ 27 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS 106 (238)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcCCC
Confidence 599999999999999999999999999999999999987532 1222333445544442
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCC
Q 030566 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF 131 (175)
Q Consensus 59 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~ 131 (175)
...+++.+++..........-+-.++||..++++++. +|++++||||+...+...+..+++++++++++|.
T Consensus 107 ~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~--~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~ 184 (238)
T d1vpla_ 107 SSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMV--NPRLAILDEPTSGLDVLNAREVRKILKQASQEGL 184 (238)
T ss_dssp HHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhc--CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 2345566666544333332234458999999999999 9999999999666666667788899999998999
Q ss_pred cEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 132 NVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 132 tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|| +++||+++++..+||++++|+.|+.+.+++
T Consensus 185 ti----i~~tH~l~~~~~~~drv~vl~~G~iv~~g~ 216 (238)
T d1vpla_ 185 TI----LVSSHNMLEVEFLCDRIALIHNGTIVETGT 216 (238)
T ss_dssp EE----EEEECCHHHHTTTCSEEEEEETTEEEEEEE
T ss_pred EE----EEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99 999999999999999999999998776544
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=3.9e-37 Score=238.94 Aligned_cols=160 Identities=16% Similarity=0.062 Sum_probs=127.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-----------cccC-------CCCccCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENF-------DYPVAMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----------~~~~-------~~~~~~~~~~~~~---- 58 (175)
+||+++|+||||||||||+|+|+|+++|++|+|.++|+++. .+.+ ...+.+++.+++.
T Consensus 28 ~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~ 107 (240)
T d1g2912 28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK 107 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhhhhHH
Confidence 59999999999999999999999999999999999987642 1222 3334445555543
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
..++++.+++..........-+.+|+||..+||++.. +|++++||||+...+......++++++++
T Consensus 108 ~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~--~P~iLllDEPt~~LD~~~~~~i~~~l~~l 185 (240)
T d1g2912 108 LRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR--KPQVFLMDEPLSNLDAKLRVRMRAELKKL 185 (240)
T ss_dssp HTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT--CCSEEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCCcccCHHHHHHHHHHHHHH
Confidence 3457777777654333322234459999999999999 99999999997777777788888999998
Q ss_pred HhC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 127 KSR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 127 ~~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
+++ |.|| +++||+++++..+||++++|..|..+-.+
T Consensus 186 ~~~~g~tv----i~vTHd~~~~~~~~drv~vm~~G~iv~~G 222 (240)
T d1g2912 186 QRQLGVTT----IYVTHDQVEAMTMGDRIAVMNRGVLQQVG 222 (240)
T ss_dssp HHHHTCEE----EEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HhccCCEE----EEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 655 9999 99999999999999999999999876544
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.9e-37 Score=239.67 Aligned_cols=163 Identities=13% Similarity=0.145 Sum_probs=129.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCCC-------CccCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~~-------~~~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. +.+++ .+.+++.+++.
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~ 109 (240)
T d3dhwc1 30 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109 (240)
T ss_dssp SSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHHHHH
Confidence 599999999999999999999999999999999999987521 12333 33445544432
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..|+||.++||+++. +|++|++|||+...+...+..+++++++++
T Consensus 110 ~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~--~P~lLllDEPt~~LD~~~~~~i~~~l~~l~ 187 (240)
T d3dhwc1 110 DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS--NPKVLLCDEATSALDPATTRSILELLKDIN 187 (240)
T ss_dssp TTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHT--CCSEEEEESGGGSSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhcc--CCCeEEeccccccCCHHHhhHHHHHHHHHH
Confidence 3467777787655433332234459999999999999 999999999966666667778888999986
Q ss_pred hC-CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhhh
Q 030566 128 SR-NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYS 169 (175)
Q Consensus 128 ~~-g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (175)
++ |.|| +++||+++++..+||++++|..|..+.+++..
T Consensus 188 ~~~g~tv----i~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ 226 (240)
T d3dhwc1 188 RRLGLTI----LLITHEMDVVKRICDCVAVISNGELIEQDTVS 226 (240)
T ss_dssp HHHCCEE----EEEBSCHHHHHHHCSEEEEEETTEEEEEEETT
T ss_pred hccCCEE----EEEcCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 65 9999 99999999999999999999999888766543
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3.8e-37 Score=239.63 Aligned_cols=161 Identities=14% Similarity=0.071 Sum_probs=120.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc---------------ccCCCCccCCcchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------------~~~~~~~~~~~~~~~~------- 58 (175)
+||++||+||||||||||+|+|+|+++|++|+|.++|+++.. +...+.+.+++.+++.
T Consensus 31 ~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~ 110 (240)
T d1ji0a_ 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK 110 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcC
Confidence 599999999999999999999999999999999999987532 1112223334433321
Q ss_pred --------HHHHHHHh-CCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC
Q 030566 59 --------LEDVMEEL-GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR 129 (175)
Q Consensus 59 --------~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~ 129 (175)
...+++.+ .+..........-+..++||..+++++.. +|++|+||||+...+...+..+++++++++++
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~--~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~ 188 (240)
T d1ji0a_ 111 DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS--RPKLLMMDEPSLGLAPILVSEVFEVIQKINQE 188 (240)
T ss_dssp CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTT--CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHh--CCCEeeecCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 01111111 11111111111123348999999999999 99999999997777777788899999999988
Q ss_pred CCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 130 NFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 130 g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
|.|| +++||+++++.++||++++|+.|..+..++
T Consensus 189 g~ti----l~~tH~l~~~~~~~drv~vl~~G~iv~~g~ 222 (240)
T d1ji0a_ 189 GTTI----LLVEQNALGALKVAHYGYVLETGQIVLEGK 222 (240)
T ss_dssp TCCE----EEEESCHHHHHHHCSEEEEEETTEEEEEEE
T ss_pred CCEE----EEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 9999 999999999999999999999998776554
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=8.4e-37 Score=237.07 Aligned_cols=161 Identities=16% Similarity=0.065 Sum_probs=127.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc----------ccCC-------CCccCCcchhcc-----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFD-------YPVAMDIRELIS----- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~----------~~~~-------~~~~~~~~~~~~----- 58 (175)
+||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. +.++ +.+.+++.+++.
T Consensus 30 ~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~ 109 (242)
T d1oxxk2 30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN 109 (242)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhhhhhHh
Confidence 599999999999999999999999999999999999976421 1233 333445555442
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHH
Q 030566 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (175)
Q Consensus 59 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~ 127 (175)
..++++.+++..........-+..|+||..+||++.. +|++|++|||+...+......+++++++++
T Consensus 110 ~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~--~P~llllDEPt~~LD~~~~~~i~~~i~~l~ 187 (242)
T d1oxxk2 110 MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK--DPSLLLLDEPFSNLDARMRDSARALVKEVQ 187 (242)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCGGGHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhh--cccceeecCCccCCCHHHHHHHHHHHHHHH
Confidence 3567777777544333322223449999999999999 999999999977777777888999999985
Q ss_pred h-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 128 S-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 128 ~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+ .|.|+ +++||+++++..+||++++|..|..+-+++
T Consensus 188 ~~~g~tv----i~vTHd~~~~~~~~dri~vm~~G~iv~~g~ 224 (242)
T d1oxxk2 188 SRLGVTL----LVVSHDPADIFAIADRVGVLVKGKLVQVGK 224 (242)
T ss_dssp HHHCCEE----EEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred hccCCEE----EEEECCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 4 59999 999999999999999999999997665443
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.5e-36 Score=235.20 Aligned_cols=160 Identities=15% Similarity=0.128 Sum_probs=124.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc-----cccCCCCc-------cCCcchhcc-----------
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDYPV-------AMDIRELIS----------- 58 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~-----~~~~~~~~-------~~~~~~~~~----------- 58 (175)
||+++|+||||||||||+|+|+|+++|++|+|.++|.++. ++.+++.+ .+++.+++.
T Consensus 24 ~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~ 103 (240)
T d2onka1 24 RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVER 103 (240)
T ss_dssp SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHH
T ss_pred CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhcccCHHHH
Confidence 5899999999999999999999999999999999997642 23344444 334443322
Q ss_pred ---HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHh-CCCcEE
Q 030566 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVC 134 (175)
Q Consensus 59 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~-~g~tvl 134 (175)
..++++.+++..........-+.+++||.++||+++. +|++++||||+...+...+..++++++++++ .|.||
T Consensus 104 ~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~--~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tv- 180 (240)
T d2onka1 104 DRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI--QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPI- 180 (240)
T ss_dssp HHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTT--CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCE-
T ss_pred HHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhc--cCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeE-
Confidence 2445555666543333322233449999999999999 9999999999777667777888899999865 49999
Q ss_pred EEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 135 AVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 135 i~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
+++||+++++..+||++++|..|..+-+++
T Consensus 181 ---i~vtHd~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 181 ---LHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp ---EEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred ---EEEeCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 999999999999999999999988665443
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.8e-36 Score=232.14 Aligned_cols=158 Identities=14% Similarity=0.061 Sum_probs=121.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc------------------ccCCCCccCCcchhcc----
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS---- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~------------------~~~~~~~~~~~~~~~~---- 58 (175)
+||++||+||||||||||+++|+|+.+|++|+|.++|.++.. |+....+.+++.+++.
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~ 109 (230)
T d1l2ta_ 30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLI 109 (230)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHH
Confidence 599999999999999999999999999999999999986421 1223334445554432
Q ss_pred ---------------HHHHHHHhCCCCCC-chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHH
Q 030566 59 ---------------LEDVMEELGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122 (175)
Q Consensus 59 ---------------~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~ 122 (175)
..+.++.+++.... ......-+..|+||.++||+++. +|++|+||||+...+...+..++++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~--~P~lLllDEPTs~LD~~~~~~i~~~ 187 (230)
T d1l2ta_ 110 FKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALAN--NPPIILADQPTGALDSKTGEKIMQL 187 (230)
T ss_dssp TCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhc--CCCEEEecCCccccCHHHHHHHHHH
Confidence 23455555654321 11111123349999999999999 9999999999777777778888899
Q ss_pred HHHHHh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHH
Q 030566 123 VDHLKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQ 165 (175)
Q Consensus 123 l~~l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~ 165 (175)
++++++ .|.|| +++||+++++ ++|||+++|+.|..+-+
T Consensus 188 l~~l~~~~g~ti----i~vTHd~~~a-~~~drv~~m~~G~Iv~~ 226 (230)
T d1l2ta_ 188 LKKLNEEDGKTV----VVVTHDINVA-RFGERIIYLKDGEVERE 226 (230)
T ss_dssp HHHHHHTTCCEE----EEECSCHHHH-TTSSEEEEEETTEEEEE
T ss_pred HHHHHHhhCCEE----EEECCCHHHH-HhCCEEEEEECCEEEEe
Confidence 999865 59999 9999999876 79999999999987644
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.9e-36 Score=236.55 Aligned_cols=160 Identities=17% Similarity=0.057 Sum_probs=122.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc--------ccCCCCc-------cCCcchhcc-------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDYPV-------AMDIRELIS------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~--------~~~~~~~-------~~~~~~~~~------- 58 (175)
+||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ..+++.+ .+++.+++.
T Consensus 29 ~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~ 108 (254)
T d1g6ha_ 29 KGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPG 108 (254)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhcc
Confidence 599999999999999999999999999999999999987532 1123332 223333221
Q ss_pred ----------------------HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccc
Q 030566 59 ----------------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHV 116 (175)
Q Consensus 59 ----------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~ 116 (175)
..++++.+++..........-+..++|+..++|++.. +|++||||||+...+....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~--~P~llilDEPt~gLD~~~~ 186 (254)
T d1g6ha_ 109 ESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMT--NPKMIVMDEPIAGVAPGLA 186 (254)
T ss_dssp SCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTCCHHHH
T ss_pred ccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHh--CcCchhhcCCcccCCHHHH
Confidence 1233444444332212222223348999999999999 9999999999777777778
Q ss_pred hHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHh
Q 030566 117 PVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQR 166 (175)
Q Consensus 117 ~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
..+++++++++++|.|| +++||+++++.++||++++|..|..+-.+
T Consensus 187 ~~i~~~i~~l~~~g~ti----l~vsHdl~~~~~~~Drv~vm~~G~iv~~g 232 (254)
T d1g6ha_ 187 HDIFNHVLELKAKGITF----LIIEHRLDIVLNYIDHLYVMFNGQIIAEG 232 (254)
T ss_dssp HHHHHHHHHHHHTTCEE----EEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHCCCEE----EEEeCcHHHHHHhCCEEEEEeCCEEEEEe
Confidence 88888999998899999 99999999999999999999999877543
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=8.2e-36 Score=234.19 Aligned_cols=161 Identities=14% Similarity=0.114 Sum_probs=125.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc---------------------------ccCCCCccCCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------------------ENFDYPVAMDI 53 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~---------------------------~~~~~~~~~~~ 53 (175)
+||++||+||||||||||+|+|+|+++|++|+|.++|+++.. |+....+.+++
T Consensus 27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv 106 (258)
T d1b0ua_ 27 AGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 106 (258)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhhccchhc
Confidence 599999999999999999999999999999999999987521 12233334454
Q ss_pred chhcc-----------------HHHHHHHhCCCCCCchh-hhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCccccccc
Q 030566 54 RELIS-----------------LEDVMEELGLGPNGGLI-YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTH 115 (175)
Q Consensus 54 ~~~~~-----------------~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~ 115 (175)
.+++. ..++++.+++....... ...-+..++||..+||++.. +|+++|||||+...+...
T Consensus 107 ~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~--~P~llilDEPT~gLD~~~ 184 (258)
T d1b0ua_ 107 LENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAM--EPDVLLFDEPTSALDPEL 184 (258)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTSCHHH
T ss_pred chhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhc--CCCEEEeccccccCCHHH
Confidence 44432 24556666664321111 11123349999999999999 999999999977777777
Q ss_pred chHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 116 VPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 116 ~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
...+++++++++++|.|| +++||+++++..+|||+++|+.|..+-+++
T Consensus 185 ~~~i~~ll~~l~~~g~ti----l~vtHdl~~~~~~adri~vm~~G~iv~~g~ 232 (258)
T d1b0ua_ 185 VGEVLRIMQQLAEEGKTM----VVVTHEMGFARHVSSHVIFLHQGKIEEEGD 232 (258)
T ss_dssp HHHHHHHHHHHHHTTCCE----EEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHhhhhhcccCCce----EEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 788888999999889999 999999999999999999999998875443
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.5e-33 Score=215.49 Aligned_cols=162 Identities=15% Similarity=0.109 Sum_probs=121.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccc--------------cCCCCccCCcchhcc--------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--------------NFDYPVAMDIRELIS-------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~--------------~~~~~~~~~~~~~~~-------- 58 (175)
+||++||+||||||||||+++|+|+. |++|+|.++|+++... .....+..+.++++.
T Consensus 24 ~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 102 (231)
T d1l7vc_ 24 AGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTR 102 (231)
T ss_dssp TTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCTTC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhccchhhH
Confidence 59999999999999999999999986 5899999999875321 111111112222221
Q ss_pred ---HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhcc-----CCCCEEEEeCCCcccccccchHHHHHHHHHHhCC
Q 030566 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNY-----LDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRN 130 (175)
Q Consensus 59 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g 130 (175)
..++++.+++..........-+..++||..+++++.+. -+|++++||||+...+......+.+++++++++|
T Consensus 103 ~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g 182 (231)
T d1l7vc_ 103 TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQG 182 (231)
T ss_dssp HHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 34566677776554333333344599999999988742 1458999999966666677778889999999899
Q ss_pred CcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 131 FNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 131 ~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
.|| +++||+++++.++||++++|..|+.+.+++
T Consensus 183 ~ti----i~vtHdl~~~~~~~dri~vl~~G~iv~~G~ 215 (231)
T d1l7vc_ 183 LAI----VMSSHDLNHTLRHAHRAWLLKGGKMLASGR 215 (231)
T ss_dssp CEE----EECCCCHHHHHHHCSBCCBEETTEECCCSB
T ss_pred CEE----EEEeCCHHHHHHHCCEEEEEECCEEEEECC
Confidence 999 999999999999999999999998876653
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.98 E-value=2e-32 Score=213.04 Aligned_cols=161 Identities=14% Similarity=0.019 Sum_probs=117.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCcc------CCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPVA------MDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~~------~~~~~~~~--------- 58 (175)
+||++||+||||||||||+++|+|+++|++|+|.++|.++.. +.+++.+. -++++++.
T Consensus 27 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~ 106 (242)
T d1mv5a_ 27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTD 106 (242)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCCcchhhheecccccccch
Confidence 599999999999999999999999999999999999987532 23344431 12223221
Q ss_pred --HHHHHHHhCCCCCCch---hh--------hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHH
Q 030566 59 --LEDVMEELGLGPNGGL---IY--------CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 59 --~~~~~~~~~l~~~~~~---~~--------~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
....++...+...... .. ..-+..|+||.++||++.. +|+++|||||+...+......+++.+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~--~p~ililDEpts~LD~~~~~~i~~~l~~ 184 (242)
T d1mv5a_ 107 EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR--NPKILMLDEATASLDSESESMVQKALDS 184 (242)
T ss_dssp HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCSCSSCSSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhc--CCCEEEecCCccccCHHHHHHHHHHHHH
Confidence 1222232222211100 00 0123459999999999999 9999999999666666677788889998
Q ss_pred HHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhhh
Q 030566 126 LKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAYS 169 (175)
Q Consensus 126 l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (175)
++ +++|| +++||+++.+. .||++++|+.|..+-++++.
T Consensus 185 l~-~~~Tv----i~itH~l~~~~-~~D~i~vl~~G~iv~~G~~~ 222 (242)
T d1mv5a_ 185 LM-KGRTT----LVIAHRLSTIV-DADKIYFIEKGQITGSGKHN 222 (242)
T ss_dssp HH-TTSEE----EEECCSHHHHH-HCSEEEEEETTEECCCSCHH
T ss_pred Hc-CCCEE----EEEECCHHHHH-hCCEEEEEECCEEEEECCHH
Confidence 86 48999 99999999886 59999999999988776543
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.7e-33 Score=218.29 Aligned_cols=161 Identities=15% Similarity=0.033 Sum_probs=112.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||++||+||||||||||+++|+|+++|++|+|.++|.++.. +.+++.+ ..++++++.
T Consensus 39 ~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~ 118 (251)
T d1jj7a_ 39 PGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTM 118 (251)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccCcchhhhhhhhhcccchH
Confidence 599999999999999999999999999999999999987532 1222222 113332221
Q ss_pred --H---------HHHHHHhCCCCC--CchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHH
Q 030566 59 --L---------EDVMEELGLGPN--GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 59 --~---------~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
. .+.++.+..+.. .......-+..|+||.+|||++.. +|+++|||||+...+......+.+.+++
T Consensus 119 ~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~--~p~ililDEpTs~LD~~~~~~i~~~l~~ 196 (251)
T d1jj7a_ 119 EEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIR--KPCVLILDDATSALDANSQLQVEQLLYE 196 (251)
T ss_dssp HHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeecccc--CCcEEEecCcCcccChhhHHHHHHHHHH
Confidence 0 011111111100 000001123349999999999999 9999999999555555556667778877
Q ss_pred HHh-CCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 126 LKS-RNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 126 l~~-~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
+.+ .++|+ +++||+++.+ +.||++++|+.|..+-++++
T Consensus 197 l~~~~~~Tv----i~itH~l~~~-~~aDrI~vl~~G~iv~~Gt~ 235 (251)
T d1jj7a_ 197 SPERYSRSV----LLITQHLSLV-EQADHILFLEGGAIREGGTH 235 (251)
T ss_dssp CGGGGGCEE----EEECSCHHHH-HTCSEEEEEETTEEEEEECH
T ss_pred HhhhcCCEE----EEEeCCHHHH-HhCCEEEEEECCEEEEECCH
Confidence 754 48999 9999999876 56999999999998876554
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.7e-32 Score=213.15 Aligned_cols=160 Identities=18% Similarity=0.093 Sum_probs=113.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~~--------- 58 (175)
+||++||+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++++ ..++++++.
T Consensus 28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~ 107 (241)
T d2pmka1 28 QGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVE 107 (241)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHCTTSTTCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEecccccCCccccccccccCccccHH
Confidence 599999999999999999999999999999999999987532 1233332 223333332
Q ss_pred -HHHHHHHhCC------CCCC-----chhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 -LEDVMEELGL------GPNG-----GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l------~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
....++..++ .+.. ......-+..|+||.+|||++.. +|+++|||||+...+......+.+.++++
T Consensus 108 ~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~--~p~ililDEpts~LD~~~~~~i~~~l~~l 185 (241)
T d2pmka1 108 KVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN--NPKILIFDEATSALDYESEHVIMRNMHKI 185 (241)
T ss_dssp HHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTT--CCSEEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhc--ccchhhhhCCccccCHHHHHHHHHHHHHH
Confidence 1111111111 0000 00001123349999999999999 99999999996655566666777788887
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
. +++|+ +++||+++.+ ..||++++|+.|..+-++++
T Consensus 186 ~-~~~Tv----i~itH~l~~~-~~~D~i~vl~~G~Iv~~G~~ 221 (241)
T d2pmka1 186 C-KGRTV----IIIAHRLSTV-KNADRIIVMEKGKIVEQGKH 221 (241)
T ss_dssp H-TTSEE----EEECSSGGGG-TTSSEEEEEETTEEEEEECH
T ss_pred h-CCCEE----EEEECCHHHH-HhCCEEEEEECCEEEEECCH
Confidence 5 48899 9999999877 57999999999988755543
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=1.3e-32 Score=215.47 Aligned_cols=160 Identities=18% Similarity=0.101 Sum_probs=112.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCCc------cCCcchhc--------cH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYPV------AMDIRELI--------SL 59 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~~------~~~~~~~~--------~~ 59 (175)
+||++||+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.+ ..+..+++ ..
T Consensus 40 ~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~ 119 (253)
T d3b60a1 40 AGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR 119 (253)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCH
T ss_pred CCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeeccccCCcchhhhhhhcCcccCCH
Confidence 599999999999999999999999999999999999987532 1122222 11221111 11
Q ss_pred H------------HHHHHhCCCC--CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHH
Q 030566 60 E------------DVMEELGLGP--NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (175)
Q Consensus 60 ~------------~~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~ 125 (175)
. +..+.+..+. ........-+-.|+||.+|||++.. +|+++|||||+...+......+.+.|++
T Consensus 120 ~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~--~p~ililDEpts~LD~~~~~~i~~~l~~ 197 (253)
T d3b60a1 120 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR--DSPILILDEATSALDTESERAIQAALDE 197 (253)
T ss_dssp HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH--CCSEEEEETTTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhc--CCCEEEeccccccCCHHHHHHHHHHHHH
Confidence 1 1122211110 0000000123348999999999999 9999999999666666666677788888
Q ss_pred HHhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 126 LKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 126 l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
+.+ ++|+ +++||+++.+ ..||++++|+.|..+-++++
T Consensus 198 l~~-~~Tv----i~itH~l~~~-~~~D~v~vl~~G~Iv~~G~~ 234 (253)
T d3b60a1 198 LQK-NRTS----LVIAHRLSTI-EQADEIVVVEDGIIVERGTH 234 (253)
T ss_dssp HHT-TSEE----EEECSCGGGT-TTCSEEEEEETTEEEEEECH
T ss_pred hcc-CCEE----EEEECCHHHH-HhCCEEEEEECCEEEEECCH
Confidence 854 8899 9999999877 57999999999987765543
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.97 E-value=1.9e-31 Score=208.76 Aligned_cols=159 Identities=15% Similarity=0.102 Sum_probs=113.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc-------ccCCCC------ccCCcchhcc---------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDYP------VAMDIRELIS--------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~-------~~~~~~------~~~~~~~~~~--------- 58 (175)
+||++||+||||||||||+|+|+|+++|++|+|.++|.++.. +.+++. +..++++++.
T Consensus 43 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~ 122 (255)
T d2hyda1 43 KGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDE 122 (255)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHHHHHhccCcCCCHH
Confidence 599999999999999999999999999999999999987532 122222 2234444432
Q ss_pred -HHHHHHHhCCCC-----------CCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHH
Q 030566 59 -LEDVMEELGLGP-----------NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (175)
Q Consensus 59 -~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l 126 (175)
...+++..++.. ........-+..|+||.++||++.. +|+++|||||+...+......+.+.++++
T Consensus 123 ~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~--~p~ililDEpts~LD~~t~~~i~~~l~~l 200 (255)
T d2hyda1 123 EVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN--NPPILILDEATSALDLESESIIQEALDVL 200 (255)
T ss_dssp HHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH--CCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 122222222211 0000000113348999999999999 99999999995555555666777788777
Q ss_pred HhCCCcEEEEEeeeccchhhhhcCCCceeEeccchhhHHhh
Q 030566 127 KSRNFNVCAVYLLDSQVCIRFRTLPPCIVCFCCTHTVVQRA 167 (175)
Q Consensus 127 ~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (175)
. +++|+ +++||+++.+ ..||++++|+.|..+-+++
T Consensus 201 ~-~~~Tv----I~itH~~~~~-~~~D~ii~l~~G~iv~~G~ 235 (255)
T d2hyda1 201 S-KDRTT----LIVAHRLSTI-THADKIVVIENGHIVETGT 235 (255)
T ss_dssp T-TTSEE----EEECSSGGGT-TTCSEEEEEETTEEEEEEC
T ss_pred h-cCCEE----EEEeCCHHHH-HhCCEEEEEECCEEEEECC
Confidence 5 47899 9999999977 5799999999998765544
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.96 E-value=3.4e-30 Score=195.23 Aligned_cols=147 Identities=11% Similarity=0.036 Sum_probs=102.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccc--cCC-------CCccCCcchhcc-------------
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--NFD-------YPVAMDIRELIS------------- 58 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~--~~~-------~~~~~~~~~~~~------------- 58 (175)
+||++||+||||||||||+|+|+|+++|++|+|.++|.++... .+. +...++..+++.
T Consensus 26 ~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~ 105 (200)
T d1sgwa_ 26 KGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKN 105 (200)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHH
T ss_pred CCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCccCHH
Confidence 5999999999999999999999999999999999999875431 111 222233333322
Q ss_pred -HHHHHHHhCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhC-CCcEEEE
Q 030566 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (175)
Q Consensus 59 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~-g~tvli~ 136 (175)
..+.++.+++.... .....-+.+++||..++++++. +|+++|||||+...+...+..+++.+.++.++ +.+|
T Consensus 106 ~~~~~l~~~~~~~~~-~~~~~LSgG~~qrv~ia~al~~--~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~i--- 179 (200)
T d1sgwa_ 106 EIMDALESVEVLDLK-KKLGELSQGTIRRVQLASTLLV--NAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI--- 179 (200)
T ss_dssp HHHHHHHHTTCCCTT-SBGGGSCHHHHHHHHHHHHTTS--CCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEE---
T ss_pred HHHHHHHHcCCcccc-cccCcCCCcHHHHHHHHHHHhc--CCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEE---
Confidence 13344555543221 1222223458999999999999 99999999997776677777788888887554 4333
Q ss_pred EeeeccchhhhhcCCCceeEec
Q 030566 137 YLLDSQVCIRFRTLPPCIVCFC 158 (175)
Q Consensus 137 ~l~~sH~~~~~~~~~~~~~~~~ 158 (175)
+.++|++ .+||++..++
T Consensus 180 -i~~~~~l----~~~D~~~~l~ 196 (200)
T d1sgwa_ 180 -ISSREEL----SYCDVNENLH 196 (200)
T ss_dssp -EEESSCC----TTSSEEEEGG
T ss_pred -EEEechh----hhcchhhhee
Confidence 5555654 4688777664
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=9.1e-31 Score=207.64 Aligned_cols=160 Identities=13% Similarity=0.059 Sum_probs=103.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc-ccccCCCCccCCcchhcc---------HHHHHHHhCC--
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELIS---------LEDVMEELGL-- 68 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l-- 68 (175)
+||++||+||||||||||+|+|+|+++|++|+|.++|+.. ..+. .+.+..++++++. ...+.+...+
T Consensus 61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~-~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~ 139 (281)
T d1r0wa_ 61 KGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQF-SWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQ 139 (281)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSS-CCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHH
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEecc-ccccCceeeccccccccccchHHHHHHHHHHhHH
Confidence 5999999999999999999999999999999999988531 1111 1222223333322 1223332221
Q ss_pred -----CCCCchh--h--hHHHHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEee
Q 030566 69 -----GPNGGLI--Y--CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLL 139 (175)
Q Consensus 69 -----~~~~~~~--~--~~~~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~ 139 (175)
....... . ..-+..|+||.+|||++.+ +|++++||||+...+......+.+.+.....+++|+ ++
T Consensus 140 ~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~--~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tv----i~ 213 (281)
T d1r0wa_ 140 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTR----IL 213 (281)
T ss_dssp HHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHS--CCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEE----EE
T ss_pred HHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHh--CccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEE----EE
Confidence 1100000 0 0123449999999999999 999999999933332222222222111112357899 99
Q ss_pred eccchhhhhcCCCceeEeccchhhHHhhh
Q 030566 140 DSQVCIRFRTLPPCIVCFCCTHTVVQRAY 168 (175)
Q Consensus 140 ~sH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (175)
+||+++.+ ..||++++|+.|..+.++++
T Consensus 214 itH~~~~l-~~aDrI~vl~~G~i~~~Gt~ 241 (281)
T d1r0wa_ 214 VTSKMEHL-RKADKILILHQGSSYFYGTF 241 (281)
T ss_dssp ECSCHHHH-HTCSEEEEEETTEEEEEECH
T ss_pred EechHHHH-HhCCEEEEEECCEEEEECCH
Confidence 99999766 67999999999988766543
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.71 E-value=7.8e-19 Score=128.01 Aligned_cols=144 Identities=17% Similarity=0.236 Sum_probs=78.1
Q ss_pred EEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccC--CCCc-cCC-cchhccHHHHHHHhCCCCCC-chhhhHH
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENF--DYPV-AMD-IRELISLEDVMEELGLGPNG-GLIYCME 79 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~--~~~~-~~~-~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 79 (175)
++|+||||||||||+|+|+|.++++.|.+...+.+...... .+.. ... .................... .......
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEE 82 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHHH
T ss_pred EEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhcCcchhhh
Confidence 78999999999999999999999999999998765322110 0000 000 00000000000000000000 0011111
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHH-HHhCCCcEEEEEeeeccchhhhhcCCCceeEe
Q 030566 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~-l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
...++++..++++... +|+++++|||+..... ...+...+.+ ++..+.++ ++++|+.. ...+++++..+
T Consensus 83 ~~~~~~~~~l~~~~~~--~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~~~i----l~~~h~~~-~~~~~~~i~~~ 152 (178)
T d1ye8a1 83 LAIPILERAYREAKKD--RRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPNVNV----VATIPIRD-VHPLVKEIRRL 152 (178)
T ss_dssp HHHHHHHHHHHHHHHC--TTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTTSEE----EEECCSSC-CSHHHHHHHTC
T ss_pred hhhhhHHHHHHHHHhc--CCCceeecCCCccchh--hHHHHHHHHHHhccCCCEE----EEEEccHH-HHHhhceEEEE
Confidence 2235677788888888 9999999999443322 1233334444 44557888 88888753 34455544433
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.67 E-value=7.2e-08 Score=72.48 Aligned_cols=47 Identities=11% Similarity=0.137 Sum_probs=33.3
Q ss_pred CCCEEEEeCC-CcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhh
Q 030566 98 DDDYLVFDCP-GQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFR 148 (175)
Q Consensus 98 ~p~lliLDEP-~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~ 148 (175)
+..++++||+ ......++....+.+++.+.+.+..+ +++||..+...
T Consensus 114 ~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~----i~tTH~~eL~~ 161 (224)
T d1ewqa2 114 ENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYT----LFATHYFELTA 161 (224)
T ss_dssp TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEE----EEECCCHHHHT
T ss_pred CCcEEeecccccCcchhhhcchHHHHHHHHhhcCcce----EEeeechhhhh
Confidence 6679999999 33333334445566888887778888 99999865443
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=98.59 E-value=4.1e-08 Score=73.21 Aligned_cols=107 Identities=33% Similarity=0.668 Sum_probs=55.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHHHHH
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 83 (175)
|++|+|+.|||||||++.|..... ..+++-+-+.++......+....+.++........+.. ...............+
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~-~~~~~~ivn~d~~~~~~~~~~~id~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 79 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREG-YGPNGAIVESYDRLME 79 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTT-CCHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh-hCCeEEEEecCcccccCCCcccchHHHHHHHHHHhHhh-hccCCchhhhhHhHHh
Confidence 689999999999999999986543 34445554555544444444433444444444333322 1111101111111222
Q ss_pred HHHHHHHH--HhhccCCCCEEEEeCCCcccccc
Q 030566 84 NLDDWLAE--ELDNYLDDDYLVFDCPGQIELFT 114 (175)
Q Consensus 84 ~~~~~l~~--~l~~~~~p~lliLDEP~~~~~~~ 114 (175)
........ .... ++++++.|-|+......
T Consensus 80 ~~~~~~~~~~~~~~--~~~~~~id~~g~~~~~~ 110 (244)
T d1yrba1 80 KFNEYLNKILRLEK--ENDYVLIDTPGQMETFL 110 (244)
T ss_dssp THHHHHHHHHHHHH--HCSEEEEECCSSHHHHH
T ss_pred hHHHHHHHHHhhcc--ccceeeeccccchhHHH
Confidence 22222222 2233 67899999996655544
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.52 E-value=1.6e-07 Score=70.98 Aligned_cols=46 Identities=9% Similarity=0.126 Sum_probs=28.9
Q ss_pred CCCEEEEeCCCcc-cccccchHHHHHHHHHHhC-CCcEEEEEeeeccchhhh
Q 030566 98 DDDYLVFDCPGQI-ELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQVCIRF 147 (175)
Q Consensus 98 ~p~lliLDEP~~~-~~~~~~~~~~~~l~~l~~~-g~tvli~~l~~sH~~~~~ 147 (175)
+..++++||+.+. ...++......+++.+..+ +..+ +++||..+..
T Consensus 120 ~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~----i~tTH~~~l~ 167 (234)
T d1wb9a2 120 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALT----LFATHYFELT 167 (234)
T ss_dssp TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEE----EEECSCGGGG
T ss_pred cccEEeecccccCCChhhhhHHHHHhhhhhhccccceE----EEecchHHHh
Confidence 6679999999333 3333444455678777554 4556 7788865543
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=98.33 E-value=1.4e-07 Score=66.30 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=26.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccceeEEe
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~ 36 (175)
+++|+|++|||||||++.|+..+....-++.+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~ 36 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI 36 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 789999999999999999998766544445443
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.29 E-value=2.3e-07 Score=66.85 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=27.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
|.+++|+||+|||||||++.|....+.....+..
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~ 35 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSA 35 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEe
Confidence 8899999999999999999998877644333433
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=1.6e-07 Score=66.41 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=29.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccceeEEeecC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~ 39 (175)
.+.|.||+|+|||||++.++..+....+.+.+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~ 38 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTE 38 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 588999999999999999999988776666655443
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=98.26 E-value=4.7e-06 Score=57.29 Aligned_cols=35 Identities=31% Similarity=0.308 Sum_probs=25.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEeec
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~ 38 (175)
|-.++.|.|++|||||||.+.|+.- ..|...++..
T Consensus 1 MkklIii~G~pGsGKTTla~~L~~~---~~~~~~~~~d 35 (152)
T d1ly1a_ 1 MKKIILTIGCPGSGKSTWAREFIAK---NPGFYNINRD 35 (152)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH---STTEEEECHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh---CCCCEEechH
Confidence 4468899999999999999987542 2244555433
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.20 E-value=4.1e-07 Score=64.12 Aligned_cols=26 Identities=38% Similarity=0.428 Sum_probs=23.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
|.++.|.||+||||||+.+.|+..+.
T Consensus 4 g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999999988653
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=98.15 E-value=6.4e-07 Score=63.02 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+|-++.|+|++||||||+.+.|+-.+.
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 488999999999999999999997664
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.15 E-value=6.4e-06 Score=60.80 Aligned_cols=95 Identities=20% Similarity=0.162 Sum_probs=50.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHHH
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (175)
+.++.++||+|+||||.+--|+..+....-+|.+-.-|.. .. -..++ .....+.+++........ ...
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~------R~--gA~eQ--L~~~a~~l~i~~~~~~~~--~d~ 73 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF------RA--AGGTQ--LSEWGKRLSIPVIQGPEG--TDP 73 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS------ST--THHHH--HHHHHHHHTCCEECCCTT--CCH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccc------cc--cchhh--HhhcccccCceEEeccCC--ccH
Confidence 6799999999999999987777766543334544333211 11 11111 334555555543211110 111
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCCcc
Q 030566 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQI 110 (175)
Q Consensus 82 ~~~~~~~l~~~l~~~~~p~lliLDEP~~~ 110 (175)
....+..+...-.+ +-++++.|=|++.
T Consensus 74 ~~~~~~~~~~~~~~--~~d~ilIDTaGr~ 100 (207)
T d1okkd2 74 AALAYDAVQAMKAR--GYDLLFVDTAGRL 100 (207)
T ss_dssp HHHHHHHHHHHHHH--TCSEEEECCCCCC
T ss_pred HHHHHHHHHHHHHC--CCCEEEcCccccc
Confidence 22222333333444 6788888888543
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.13 E-value=6.5e-07 Score=67.10 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=26.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
+|.+.+++|++|+|||||++.|.+-..-..|+|+-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCccc
Confidence 48899999999999999999999877666777764
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.11 E-value=6.1e-07 Score=63.41 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=26.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
.+++|+|++|||||||++.|...++....++-+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~v 34 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGT 34 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 378999999999999999998877764444544
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.11 E-value=7.9e-06 Score=60.49 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=49.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHHHH
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (175)
.+++++||+|+||||.+--|+..+.-..-+|.+-.-|.. .....-......+.+++....... ...+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~----------R~gA~eQL~~~a~~l~v~~~~~~~--~~d~~ 77 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF----------RAAAVEQLQVWGQRNNIPVIAQHT--GADSA 77 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTT----------CHHHHHHHHHHHHHTTCCEECCST--TCCHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccc----------cccchhhhhhhhhhcCCccccccc--CCCHH
Confidence 478999999999999887777766543334544332211 111111133455555554322111 01122
Q ss_pred HHHHHHHHHHhhccCCCCEEEEeCCCc
Q 030566 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ 109 (175)
Q Consensus 83 ~~~~~~l~~~l~~~~~p~lliLDEP~~ 109 (175)
.-.+..+..+..+ +-+++++|=|++
T Consensus 78 ~~l~~~~~~a~~~--~~d~ilIDTaGr 102 (211)
T d2qy9a2 78 SVIFDAIQAAKAR--NIDVLIADTAGR 102 (211)
T ss_dssp HHHHHHHHHHHHT--TCSEEEECCCCC
T ss_pred HHHHHHHHHHHHc--CCCEEEeccCCC
Confidence 2222333334445 677888888854
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=8.9e-07 Score=62.19 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
++.++.|.|++||||||+.+.|+..+
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998865
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=98.07 E-value=9.9e-06 Score=63.62 Aligned_cols=33 Identities=33% Similarity=0.493 Sum_probs=27.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
.-+.+.|+.|||||||++++++.++++.--|.+
T Consensus 167 ~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred CCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 347899999999999999999999886554555
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=98.02 E-value=1.4e-06 Score=60.86 Aligned_cols=34 Identities=35% Similarity=0.537 Sum_probs=26.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
|-.++.|.||+||||||+.+.|+..++ +.+.+++
T Consensus 1 M~klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 1 MKKLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence 346899999999999999999997764 3344444
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.02 E-value=1.2e-06 Score=61.76 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
..++|.||+|||||||++.|+..+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998764
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.01 E-value=3.2e-05 Score=57.08 Aligned_cols=95 Identities=17% Similarity=0.218 Sum_probs=49.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHHH
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (175)
..++.++||+|+||||.+--|+..++....+|-+-.-|.. .....-......+.++......... .++
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~----------R~ga~eQL~~~a~~l~v~~~~~~~~--~~~ 79 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVY----------RPAALEQLQQLGQQIGVPVYGEPGE--KDV 79 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCS----------SHHHHHHHHHHHHHHTCCEECCTTC--CCH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeecc----------ccchhHHHHHhccccCcceeecccc--hhh
Confidence 3589999999999999887777666543334544333311 1111112344556666653321111 122
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCCcc
Q 030566 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQI 110 (175)
Q Consensus 82 ~~~~~~~l~~~l~~~~~p~lliLDEP~~~ 110 (175)
....+..+..+... +-++++.|=|++.
T Consensus 80 ~~~~~~a~~~~~~~--~~d~IlIDTaGr~ 106 (211)
T d1j8yf2 80 VGIAKRGVEKFLSE--KMEIIIVDTAGRH 106 (211)
T ss_dssp HHHHHHHHHHHHHT--TCSEEEEECCCSC
T ss_pred hHHHHHHHHHhhcc--CCceEEEecCCcC
Confidence 22333344555566 8899999999553
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=98.00 E-value=1.7e-06 Score=60.61 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=23.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
..++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999999875
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.98 E-value=1.6e-06 Score=61.19 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=26.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeE
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH 34 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~ 34 (175)
.+++|.|++||||||+++.|+..+......+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~ 33 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYK 33 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeE
Confidence 58999999999999999999887765444443
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=1e-06 Score=63.04 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+|-++.|+|++||||||+.+.|+-.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 477999999999999999999987654
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.97 E-value=1.8e-06 Score=59.54 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.+.|+||+||||||+.|.|+-.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988764
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.97 E-value=1.9e-07 Score=66.77 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
+.+|+|||||||||++.+|.-.
T Consensus 26 ~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 26 VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999744
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.96 E-value=2.3e-06 Score=60.03 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
|-.++|.||+||||||+.+.|+..+.
T Consensus 5 ~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 56789999999999999999987653
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.95 E-value=6e-07 Score=67.56 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
+|.+.+++|++|+|||||++.|.|-..-..|+|+-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhccccc
Confidence 47788999999999999999999987767788764
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.94 E-value=1.7e-05 Score=58.66 Aligned_cols=34 Identities=24% Similarity=0.508 Sum_probs=24.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEE
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i 35 (175)
..+++++||||+||||.+--|+..+....-+|.+
T Consensus 11 p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~l 44 (213)
T d1vmaa2 11 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVL 44 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEE
Confidence 3588999999999999877777665433333444
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.94 E-value=2.1e-06 Score=60.05 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
++|+||+||||||+++.|+--+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999997644
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.93 E-value=1.6e-06 Score=66.70 Aligned_cols=54 Identities=6% Similarity=-0.028 Sum_probs=36.1
Q ss_pred CCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeE
Q 030566 97 LDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVC 156 (175)
Q Consensus 97 ~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~ 156 (175)
..++++++|||....-..+...+.+++++..+ +.=| +++||....+ +.+|++..
T Consensus 240 ~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~Qv----iitTHsp~~~-~~~d~~~~ 293 (308)
T d1e69a_ 240 KPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQF----IVITHNKIVM-EAADLLHG 293 (308)
T ss_dssp SCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEE----EEECCCTTGG-GGCSEEEE
T ss_pred ccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEE----EEEECCHHHH-HhcccEEE
Confidence 47889999999444334444455566766643 4567 8999998766 55676644
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.90 E-value=2.5e-06 Score=60.95 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=22.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccCcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
++||-|++|||||||.+.|+-.+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6899999999999999999877654
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=97.89 E-value=3.3e-05 Score=62.18 Aligned_cols=97 Identities=21% Similarity=0.186 Sum_probs=54.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHHHHH
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (175)
-.+.+.||.||||||++..+...+......|.--..++ .+.. ....+.. ..... .
T Consensus 159 GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPi-----E~~~--~~~~q~~---------v~~~~---------~ 213 (401)
T d1p9ra_ 159 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI-----EFDI--DGIGQTQ---------VNPRV---------D 213 (401)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC-----CSCC--SSSEEEE---------CBGGG---------T
T ss_pred ceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCc-----cccc--CCCCeee---------ecCCc---------C
Confidence 47899999999999999999886643334443222222 2211 0000000 00000 0
Q ss_pred HHHHHHHHHHhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcE
Q 030566 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNV 133 (175)
Q Consensus 83 ~~~~~~l~~~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tv 133 (175)
.....++..++.+ ||+++++.|.--..... ..-+.+..|..|
T Consensus 214 ~~~~~~l~~~lR~--dPDvi~igEiRd~~ta~-------~a~~aa~tGhlV 255 (401)
T d1p9ra_ 214 MTFARGLRAILRQ--DPDVVMVGEIRDLETAQ-------IAVQASLTGHLV 255 (401)
T ss_dssp BCHHHHHHHHGGG--CCSEEEESCCCSHHHHH-------HHHHHHHTTCEE
T ss_pred CCHHHHHHHHHhh--cCCEEEecCcCChHHHH-------HHHHHHhcCCeE
Confidence 0123455667888 99999999992222222 344556678877
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.88 E-value=4.4e-05 Score=56.12 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCcc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
..++.++||||+||||.+--|+..+..
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~ 36 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKG 36 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999998888876654
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.86 E-value=3.8e-06 Score=60.53 Aligned_cols=25 Identities=36% Similarity=0.646 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
..+++|+||+||||||+.+.|+..+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998654
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.85 E-value=3.4e-05 Score=55.47 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
++.++|.+||||||+.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999997654
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.84 E-value=4.4e-06 Score=61.51 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=23.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
|.++.|+||+|||||||.+.|.-..+
T Consensus 2 G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 2 GTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987654
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.81 E-value=5e-06 Score=66.06 Aligned_cols=61 Identities=11% Similarity=0.199 Sum_probs=41.1
Q ss_pred HhhccCCCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhcCCCceeEe
Q 030566 92 ELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRTLPPCIVCF 157 (175)
Q Consensus 92 ~l~~~~~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~~~~~~~~~ 157 (175)
++....++|+++||||.......++..+.++|+++...+.-+ +++||+.. +.+.+|+.+..
T Consensus 348 al~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~----I~iTH~~~-~~~~ad~~~~V 408 (427)
T d1w1wa_ 348 AINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQF----IVISLKNT-MFEKSDALVGV 408 (427)
T ss_dssp HHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEE----EEECSCHH-HHTTCSEEEEE
T ss_pred HHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEE----EEEeCCHH-HHHhcccEEEE
Confidence 333345889999999955544445566777777765444447 89999977 55667875543
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.80 E-value=5.3e-06 Score=59.89 Aligned_cols=32 Identities=28% Similarity=0.493 Sum_probs=26.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeEEe
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~ 36 (175)
++.++.|+||+||||||+.+.|+.-+ |-..++
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is 38 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLS 38 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh----CCeeEe
Confidence 36789999999999999999998755 445554
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.79 E-value=5.6e-06 Score=58.57 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-+.+.|+|++||||||+.+.++-.+
T Consensus 2 ~~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 2 TEPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999998655
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=7.3e-06 Score=58.86 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
|...++|+||+|||||||++.|....
T Consensus 2 m~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 2 MRKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhC
Confidence 45679999999999999999888654
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.76 E-value=4.2e-06 Score=60.11 Aligned_cols=25 Identities=32% Similarity=0.662 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl 25 (175)
+|-.++|+||.||||||+.+.|+.-
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHHH
Confidence 4667889999999999999999943
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.75 E-value=5.6e-06 Score=59.64 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|+|+.|||||||++.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 48999999999999999999853
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.75 E-value=7.2e-06 Score=59.13 Aligned_cols=31 Identities=29% Similarity=0.533 Sum_probs=25.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCccccceeEEe
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~ 36 (175)
-.+++|+||+||||||+.+.|+..+ |-++++
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 3589999999999999999998876 445554
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.73 E-value=8.4e-06 Score=57.42 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+++|+|+.|||||||++.|+|-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.73 E-value=7.7e-06 Score=57.50 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
++|+|++||||||+.|.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6889999999999999998876
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=7.6e-06 Score=59.78 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
++||.|+.||||||+.+.|+..+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999987764
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=9.2e-06 Score=58.33 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
++.|+||+||||||..+.|+..+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.71 E-value=8.1e-06 Score=58.74 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
++|+||+|||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999977654
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.68 E-value=1.1e-05 Score=57.15 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.|+||+||||||+.+.|+..+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999997765
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.67 E-value=7e-06 Score=58.55 Aligned_cols=21 Identities=29% Similarity=0.233 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl 25 (175)
+||+|+.++|||||++.|+|-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999875
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.67 E-value=8e-06 Score=58.61 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.+.|+||.||||||+++.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997655
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=97.67 E-value=9.8e-06 Score=63.76 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=29.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
-++||.||+|||||||+..++..+....-+|-+-..||
T Consensus 55 ~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDp 92 (327)
T d2p67a1 55 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 92 (327)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCC
Confidence 47999999999999999999877665444565544444
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.66 E-value=8.9e-06 Score=57.65 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.++|+|++|||||||++.|+|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999985
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=1.3e-05 Score=56.51 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
+++|+|..|+|||||++.|+|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999984
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.65 E-value=1.2e-05 Score=58.12 Aligned_cols=22 Identities=36% Similarity=0.700 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
++|+||+|||||||++.|+...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987654
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.64 E-value=1.2e-05 Score=56.41 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.|+|++||||||+.|.++..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998765
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=97.62 E-value=1.5e-05 Score=57.98 Aligned_cols=24 Identities=29% Similarity=0.625 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
|++|.||+||||||+.+.|+.-+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999987654
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.62 E-value=1.5e-05 Score=56.79 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.+.|+||.||||||+.+.|+.-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998765
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.62 E-value=1.4e-05 Score=56.40 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCcc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
.++.|.|++||||||+.+.|+..+..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 36788999999999999999987753
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=97.61 E-value=1.6e-05 Score=56.33 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
+++|+|+.|+|||||++.++|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.61 E-value=1.5e-05 Score=57.48 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|+|+.|||||||++.|+|-.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998853
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=97.60 E-value=0.00023 Score=54.22 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=62.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccceeE-EeecCcccccCCCCccCCcchhccHHHHHHHhCCCCCCchhhhHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-IVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~-i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (175)
.|.++-+.||+|||||||+-.++...+-..|.+. ++.... +. .+.++.+++...........
T Consensus 56 ~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~------~~-----------~~~a~~~Gvd~d~i~~~~~~ 118 (268)
T d1xp8a1 56 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA------LD-----------PVYARALGVNTDELLVSQPD 118 (268)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC------CC-----------HHHHHHTTCCGGGCEEECCS
T ss_pred CceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCcc------CC-----------HHHHHHhCCCchhEEEEcCC
Confidence 3789999999999999999888887654445543 443321 11 12344555543321111112
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCC----cccccc---------cchHHHHHHHH----HHhCCCcEEEEEeeecc
Q 030566 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPG----QIELFT---------HVPVLRNFVDH----LKSRNFNVCAVYLLDSQ 142 (175)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~p~lliLDEP~----~~~~~~---------~~~~~~~~l~~----l~~~g~tvli~~l~~sH 142 (175)
..++.. ..+. .+..-.+++++|+|=-+ +.++-. ....+.+.++. +.+.+.++ +++.|
T Consensus 119 ~~E~~~-~~~~-~l~~~~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr~l~~~~~~~~~~v----i~tNQ 192 (268)
T d1xp8a1 119 NGEQAL-EIME-LLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAA----IFINQ 192 (268)
T ss_dssp SHHHHH-HHHH-HHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEE----EEEEE
T ss_pred CHHHHH-HHHH-HHHhcCCCcEEEEecccccccHHHHcccccchhHHHHHHHHHHHHHHHHhhhhhcCCeE----EEEeE
Confidence 222322 2222 23222268899999771 222211 11123333333 33557777 77888
Q ss_pred chhhhhc
Q 030566 143 VCIRFRT 149 (175)
Q Consensus 143 ~~~~~~~ 149 (175)
.......
T Consensus 193 v~~~~g~ 199 (268)
T d1xp8a1 193 VREKIGV 199 (268)
T ss_dssp C------
T ss_pred Eeecccc
Confidence 7766654
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.59 E-value=0.00029 Score=52.94 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~g 24 (175)
+|+++.|.|++|+|||||+.-++-
T Consensus 34 ~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 34 GGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 489999999999999999887764
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=5.4e-05 Score=57.35 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
-+.|.||+|+|||++.++|+..+.
T Consensus 47 ~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEeeCCCCCCccHHHHHHHHHcC
Confidence 367899999999999999998653
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.58 E-value=1.7e-05 Score=56.30 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|+||+||||||+.+.|+.-+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998665
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.57 E-value=1.1e-05 Score=56.73 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|+|++|||||||++.+.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998864
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.57 E-value=1.8e-05 Score=56.21 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
.+||+|+.|+|||||++.++|-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999875
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.57 E-value=1.8e-05 Score=54.25 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++|+|++|+|||||++.+.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3679999999999999999984
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=97.57 E-value=1.8e-05 Score=54.70 Aligned_cols=22 Identities=32% Similarity=0.381 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
++|+|++|||||||++.+++-.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998753
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.56 E-value=8.6e-05 Score=54.64 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+|.++.|.|++|||||||+.-++--.
T Consensus 25 ~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 25 KDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 48899999999999999987776553
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=97.56 E-value=2e-05 Score=54.60 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
|=-++++|+.|||||||++.|+|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4458999999999999999999763
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.56 E-value=2e-05 Score=58.93 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
..+.|.||+|||||||.+.|++.+.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3478999999999999999999774
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.56 E-value=2e-05 Score=56.15 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~g 24 (175)
+++.++|++||||||+.+.++.
T Consensus 15 ~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 15 EVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CEEEEECCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998753
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=97.55 E-value=1.9e-05 Score=54.13 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
++|+|+.|||||||++.+++-.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999997643
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=1.9e-05 Score=56.00 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.+.|+||.||||||..+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999998654
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=97.54 E-value=1.2e-05 Score=57.00 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+||+|+.++|||||++.|+|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998853
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.52 E-value=2.3e-05 Score=56.58 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|+||.||||||+.+.|+.-+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998765
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.51 E-value=2.5e-05 Score=57.02 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+++|-||+||||||+.+.|+.-+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467889999999999999987654
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=97.50 E-value=2.2e-05 Score=56.23 Aligned_cols=21 Identities=38% Similarity=0.382 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~g 24 (175)
++||.|+.||||||+++.+.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998864
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.50 E-value=0.00014 Score=52.64 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=24.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH-ccCccccceeEEe
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIV 36 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~-gl~~~~~G~I~i~ 36 (175)
+|+++.|.|++|+|||||+--++ .........+.+.
T Consensus 25 ~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~ 61 (242)
T d1tf7a1 25 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFV 61 (242)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccc
Confidence 48999999999999999985443 3233333345543
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.50 E-value=2.9e-05 Score=55.25 Aligned_cols=30 Identities=30% Similarity=0.594 Sum_probs=23.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccceeEEee
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g 37 (175)
.+.|+||.||||||+.+.|+.-+ |-..+..
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~~ 33 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLAT 33 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCceEec
Confidence 46789999999999999998754 4455543
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.48 E-value=3.1e-05 Score=55.52 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.-+++|-|+.||||||+++.|+..+.
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34899999999999999999988763
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.45 E-value=3.8e-05 Score=56.35 Aligned_cols=41 Identities=22% Similarity=0.202 Sum_probs=30.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcccc--ceeEEeecCcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVR--RTMHIVNLDPA 41 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~--G~I~i~g~~~~ 41 (175)
+|-++-+.|.+||||||+.+.|...+.... -.+.++|...+
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence 588999999999999999999986543222 23666765543
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=1.5e-05 Score=56.14 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|+|+.++|||||++.|+|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998864
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=97.43 E-value=2.2e-05 Score=61.24 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=22.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
++||.|++||||||+.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 899999999999999999998875
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=3.8e-05 Score=55.90 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+|.++++-|+.||||||+++.|+..+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999987654
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=3.2e-05 Score=56.91 Aligned_cols=27 Identities=30% Similarity=0.365 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 578899999999999999999998774
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=97.39 E-value=3.9e-05 Score=53.36 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|+.|||||||++.+.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 37899999999999999998854
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=0.00017 Score=54.06 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=20.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~g 24 (175)
+|+++.|.|+.|+|||||+-.++-
T Consensus 28 pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 28 AGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999999876654
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=97.34 E-value=4.1e-05 Score=57.86 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.++|+|++|||||||++.|.|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999864
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=97.34 E-value=5.2e-05 Score=55.17 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~g 24 (175)
-++||.|+.||||||+++.+..
T Consensus 3 ~iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998853
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=97.32 E-value=4.9e-05 Score=53.21 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++|+|.+|||||||++.+.+-.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998853
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=97.32 E-value=7.4e-05 Score=58.47 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=26.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
-++||.|+.|||||||+..+...+....=+|-+--.|+
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDp 89 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP 89 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred eEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeeccc
Confidence 46999999999999999999876443222344433333
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=5.9e-05 Score=55.25 Aligned_cols=28 Identities=25% Similarity=0.198 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+|-+++|-|+-||||||+.+.|+..+..
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999999886654
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=0.00034 Score=50.75 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
-+.|+||+|.|||++..-++..+.
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHHH
Confidence 367999999999999998887653
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=97.31 E-value=5.2e-05 Score=53.90 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++|+|+..||||||++.|+|.-
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Confidence 38999999999999999999753
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.31 E-value=1.3e-05 Score=55.59 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
++|+|+.|+|||||++.|+|--
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999853
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.30 E-value=5.6e-05 Score=54.63 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++|+|+.|||||||++.+.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=6.7e-05 Score=54.69 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl 25 (175)
-++||.|..||||||.++++..+
T Consensus 4 ~iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEECCCcCCHHHHHHHHHHC
Confidence 48999999999999999988543
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=7.7e-05 Score=52.96 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccC
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.|+++.|.||+|||||||+-.++...
T Consensus 22 ~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 22 TGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998877543
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=97.28 E-value=6.1e-05 Score=55.55 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=23.0
Q ss_pred EEEECCCCCcHHHHHHHHHccCccccc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCETVRR 31 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~~~~G 31 (175)
+.+.||+|+||||+.++++..+....+
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEECCCCCcHHHHHHHHHhccCCCcc
Confidence 678999999999999999988765433
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=97.28 E-value=0.00016 Score=56.51 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
++.+.||+|+|||.|.+.|++.+.
T Consensus 125 ~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 125 MVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHHhc
Confidence 445579999999999999998753
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.27 E-value=6.7e-05 Score=55.12 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+.|.||+|+||||++++++..+.
T Consensus 48 lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 67999999999999999998653
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.27 E-value=6.9e-05 Score=55.56 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.+.|.||+|+||||++++++....
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999998765
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.24 E-value=7.9e-05 Score=54.66 Aligned_cols=28 Identities=32% Similarity=0.557 Sum_probs=25.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
||.++++-|+-||||||+++.|+..+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 6999999999999999999999877754
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=97.23 E-value=7.9e-05 Score=51.88 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl 25 (175)
++++|++|+|||||++.+.+-
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999988653
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.21 E-value=0.001 Score=50.52 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=27.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccce-eEEeec
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRT-MHIVNL 38 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~-I~i~g~ 38 (175)
.|.++-+.||+|||||||+-.++.......|. |+++..
T Consensus 59 ~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE 97 (269)
T d1mo6a1 59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAE 97 (269)
T ss_dssp SSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred cceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 38899999999999999976666555444555 444443
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=97.18 E-value=3.6e-05 Score=59.39 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETV 29 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~ 29 (175)
++||.|++||||||+.+.+..+++..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~ 31 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE 31 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhhc
Confidence 79999999999999999998887643
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.18 E-value=9.4e-05 Score=54.19 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.|.||+|+||||++++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999864
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.18 E-value=0.002 Score=48.64 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~g 24 (175)
..+++|.|.-|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998864
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.17 E-value=0.00038 Score=54.75 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHH
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLY 23 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~ 23 (175)
+.+.+|+|||||||||++.+|+
T Consensus 25 ~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 25 SNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999999984
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=97.14 E-value=0.0001 Score=54.36 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+.+.||+|+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 66899999999999999998654
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.13 E-value=0.00011 Score=58.96 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
++|+|++|+|||||+|.|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999964
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.12 E-value=0.00012 Score=54.06 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
++||+|...||||||+++|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 6999999999999999999875
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.12 E-value=0.00012 Score=51.26 Aligned_cols=20 Identities=20% Similarity=0.509 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 030566 5 QLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~g 24 (175)
++++|+.|+|||||++.+.+
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999999875
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.10 E-value=0.00013 Score=51.06 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl 25 (175)
++++|+.|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988653
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=97.09 E-value=0.0001 Score=51.65 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|+.|+|||||++.+.+-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999764
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=97.09 E-value=0.00018 Score=50.56 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+|.+++|-|+=|||||||.|.++.-+..
T Consensus 32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 32 KAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 4889999999999999999999877654
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=97.08 E-value=0.00013 Score=56.54 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHccC
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.-+.++||+|+|||+|.|+|+...
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhcc
Confidence 346799999999999999999875
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.08 E-value=0.00017 Score=53.26 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=24.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G 31 (175)
..+.|.||.|+||||+++.++..++...+
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 36889999999999999999988765444
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.00014 Score=51.08 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl 25 (175)
++++|+.|+|||||++.+.+-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987663
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=97.06 E-value=0.00014 Score=53.76 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.++.|.||.|+|||||++.++.-.
T Consensus 29 ~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 29 APITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 4678999999999999999886543
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.04 E-value=0.00017 Score=55.47 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
++||-|+.|||||||.+.|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998876543
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=0.00014 Score=50.65 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl 25 (175)
++++|++|+|||||++.+++-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999988764
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=97.02 E-value=0.0018 Score=48.89 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=28.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccce-eEEeec
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRT-MHIVNL 38 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~-I~i~g~ 38 (175)
.|.++-|.||+|||||||+-.++....-..|. ++++..
T Consensus 53 ~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE 91 (263)
T d1u94a1 53 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 91 (263)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 37899999999999999987777665433444 445544
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.00 E-value=0.0002 Score=51.46 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+++|-|.-||||||+++.|...++
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999987654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.00 E-value=0.00018 Score=49.95 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 030566 5 QLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~g 24 (175)
++++|+.|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.98 E-value=0.00017 Score=54.02 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.|.||+|+|||++.++|+...
T Consensus 43 vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 43 VLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhhcc
Confidence 6799999999999999999754
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.98 E-value=0.00016 Score=50.21 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl 25 (175)
++++|.+|+|||||++.+++-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988764
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.95 E-value=0.00023 Score=50.37 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl 25 (175)
++|+|+.|+|||||++.+++-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999988764
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.93 E-value=0.00021 Score=51.98 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~g 24 (175)
+|+++-|.||+|||||||+--++-
T Consensus 33 ~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 33 TGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999977653
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.92 E-value=0.00023 Score=49.88 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl 25 (175)
++++|++|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 689999999999999987654
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.00026 Score=49.33 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~g 24 (175)
-++++|..|+|||||++-+++
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999998765
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=96.90 E-value=0.00013 Score=51.50 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|++|||||||++.+.+-
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999988654
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.90 E-value=0.00024 Score=51.83 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+.|.||+|+||||++++++..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 56899999999999999987653
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.89 E-value=0.00022 Score=49.82 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~g 24 (175)
-++|+|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999997765
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.88 E-value=0.00023 Score=52.53 Aligned_cols=22 Identities=41% Similarity=0.764 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.|.||+|+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 5799999999999999998753
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.87 E-value=0.00023 Score=49.74 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl 25 (175)
++|+|+.|+|||||++.+++-
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998763
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=0.00029 Score=49.10 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
++++|..|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCcCHHHHHHHHhCCcc
Confidence 78999999999999999988643
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.85 E-value=0.00028 Score=49.82 Aligned_cols=20 Identities=20% Similarity=0.534 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 030566 5 QLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~g 24 (175)
++++|..|+|||||++-+++
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998775
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.84 E-value=0.0003 Score=48.86 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|..|+|||||++-+++-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999988764
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.84 E-value=0.00029 Score=48.89 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl 25 (175)
++|+|..|+|||||++.+.+-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999887753
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.00033 Score=53.30 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
-+.|+||+|+|||+++.-++..+.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999887654
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.00026 Score=49.17 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~g 24 (175)
-++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999765
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.00026 Score=48.92 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|..|+|||||++.+.+-
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988753
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.82 E-value=0.00032 Score=48.76 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 030566 5 QLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~g 24 (175)
++|+|..|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.80 E-value=0.00031 Score=52.67 Aligned_cols=22 Identities=27% Similarity=0.597 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.+.||.|+|||+|.|+|++..
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 7899999999999999999764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.79 E-value=0.00035 Score=48.28 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 030566 5 QLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~g 24 (175)
++++|..|+|||||++-+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998864
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=96.78 E-value=0.00017 Score=56.09 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=22.5
Q ss_pred EEEECCCCCcHHHHHHHHHccCcc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+.|.|+.|+|||||+|.+++++++
T Consensus 31 vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 31 VLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSCC
T ss_pred EEEECCCCccHHHHHHHHHHhCCC
Confidence 678999999999999999999976
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.00045 Score=50.49 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~g 24 (175)
+|.++.|.|++||||||++-.++.
T Consensus 36 ~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 36 SMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999988864
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.77 E-value=0.00046 Score=48.30 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-++++|..|+|||||++.+++..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 37899999999999999998754
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.76 E-value=0.00035 Score=50.86 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.+.||.|+||||++++++..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 5689999999999999998754
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.76 E-value=0.00036 Score=49.00 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl 25 (175)
++++|..|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988763
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.74 E-value=0.00032 Score=49.20 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++|+|.+|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999887754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.74 E-value=0.00039 Score=48.28 Aligned_cols=20 Identities=15% Similarity=0.316 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 030566 5 QLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~g 24 (175)
++|+|..|+|||||++-+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=96.74 E-value=0.00023 Score=49.82 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
-+.++|++|+|||||++.+++-.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987543
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.73 E-value=0.00043 Score=50.72 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLY 23 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~ 23 (175)
+|+++.|.||+|||||||+--++
T Consensus 35 ~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 35 TQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999987554
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.72 E-value=0.00042 Score=48.45 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=17.8
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 030566 5 QLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~g 24 (175)
++++|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 88999999999999976654
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.72 E-value=0.00034 Score=49.96 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 030566 5 QLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~g 24 (175)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 78999999999999998775
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=96.72 E-value=0.00046 Score=50.76 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~g 24 (175)
.++||.|+-||||||..+.+..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999954
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.71 E-value=0.00027 Score=52.47 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
++.+.||.|+||||+++.++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 345669999999999999998764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.67 E-value=0.0004 Score=48.51 Aligned_cols=20 Identities=45% Similarity=0.612 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 030566 5 QLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~g 24 (175)
++++|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.66 E-value=0.00047 Score=47.97 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl 25 (175)
++++|..|+|||||++.+.+-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988743
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.65 E-value=0.00046 Score=51.86 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+-|.||+|+|||++.++++....
T Consensus 41 iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEecCCCCCchHHHHHHHHHhC
Confidence 67899999999999999999653
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.65 E-value=0.00049 Score=47.83 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl 25 (175)
++++|..|+|||||++-+.+-
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999977653
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.00052 Score=47.78 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 030566 5 QLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~g 24 (175)
++++|+.|+|||||++-+++
T Consensus 5 i~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.63 E-value=0.00056 Score=50.04 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHH-HccCccccc
Q 030566 4 AQLVIGPAGSGKSTYCSSL-YRHCETVRR 31 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i-~gl~~~~~G 31 (175)
-+.|+|.+|||||||++-+ .+-..|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 4789999999999999876 344557666
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.62 E-value=0.00045 Score=48.31 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~g 24 (175)
-++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999988765
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.60 E-value=0.00032 Score=49.03 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl 25 (175)
++++|+.|+|||||++.+++-
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999977553
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=96.60 E-value=0.00043 Score=53.01 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-+||+|.+-||||||++++++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999975
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.60 E-value=0.00061 Score=49.37 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl 25 (175)
.|+++.|.|++|+|||||+--++--
T Consensus 33 ~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 33 SQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4899999999999999998877643
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.59 E-value=0.00044 Score=52.22 Aligned_cols=24 Identities=29% Similarity=0.692 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
-+-|.||+|+|||+|.+++++.+.
T Consensus 43 giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 43 GVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp EEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCcchhHHHHHHHHhC
Confidence 367999999999999999999874
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.57 E-value=0.00058 Score=48.13 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~g 24 (175)
-++|+|..|+|||||++-+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 379999999999999988765
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.56 E-value=0.00061 Score=47.37 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 030566 5 QLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~g 24 (175)
++++|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997654
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.55 E-value=0.00052 Score=52.82 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl 25 (175)
+||+|.+-+|||||+++|+|.
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EeEECCCCCCHHHHHHHHHCC
Confidence 799999999999999999885
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.54 E-value=0.00064 Score=47.36 Aligned_cols=20 Identities=30% Similarity=0.630 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 030566 5 QLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~g 24 (175)
++++|..|+|||||++.+++
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998775
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.53 E-value=0.00037 Score=48.74 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=8.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 030566 5 QLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~g 24 (175)
++++|..|+|||||++.+++
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999987765
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=96.51 E-value=0.0008 Score=48.07 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+|++|.-.||||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 6999999999999999999854
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.47 E-value=0.00086 Score=50.78 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl 25 (175)
|+=-+||||.+-+|||||+++|++-
T Consensus 1 m~~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 1 MGFKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHCC
Confidence 4557999999999999999999965
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=96.47 E-value=0.00075 Score=46.94 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~g 24 (175)
-++|+|..|+|||||++-+++
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998764
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.46 E-value=0.00067 Score=47.59 Aligned_cols=29 Identities=28% Similarity=0.294 Sum_probs=23.8
Q ss_pred EEEECCCCCcHHHHHHHHHccCcccccee
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTM 33 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~~~~G~I 33 (175)
+.++|..|+|||||++-+..-..|+.|..
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 78999999999999998876655666643
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.44 E-value=0.00077 Score=47.66 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=21.6
Q ss_pred EEEECCCCCcHHHHHHHHHcc--Cccccc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRH--CETVRR 31 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl--~~~~~G 31 (175)
+.++|..|+|||||++-+.-. ..|+-|
T Consensus 5 ivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 789999999999999988432 246777
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.44 E-value=0.00082 Score=47.34 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|..|+|||||++-+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999977664
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.43 E-value=0.00069 Score=54.97 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=21.3
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+.++||+|||||-|.|.|++++.
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999764
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.41 E-value=0.00085 Score=46.45 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
-++++|..|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999987643
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=96.39 E-value=0.0012 Score=47.08 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=18.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHH
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLY 23 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~ 23 (175)
|.-+.+.|++|+|||||.-.+.
T Consensus 14 g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHH
Confidence 5568999999999999876553
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=96.39 E-value=0.00076 Score=53.31 Aligned_cols=26 Identities=35% Similarity=0.508 Sum_probs=23.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+.++.+.||+|+||||+.+.|++.+.
T Consensus 154 ~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 154 KRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999999875
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.36 E-value=0.00081 Score=47.52 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 030566 5 QLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~g 24 (175)
++|+|..|+|||||++.++.
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 78999999999999988764
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=96.35 E-value=0.001 Score=47.36 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=18.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHH
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLY 23 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~ 23 (175)
|.-+.+.|++|+|||||.-.+.
T Consensus 15 g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 15 GVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp TEEEEEEESSSSSHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 5668999999999999986654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.00084 Score=47.64 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl 25 (175)
++++|..|+|||||++.+.+-
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999876543
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.31 E-value=0.00089 Score=47.14 Aligned_cols=20 Identities=20% Similarity=0.404 Sum_probs=17.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 030566 5 QLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~g 24 (175)
++++|..|+|||||++-+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999976654
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.28 E-value=0.0011 Score=48.40 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.+++|=|+-||||||+++.|+-.++
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999998764
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.0012 Score=50.56 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=25.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV 29 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~ 29 (175)
+|+..+|+|++|+|||||+..|+.-...+
T Consensus 42 rGQr~~I~g~~g~GKT~l~~~i~~~~~~~ 70 (289)
T d1xpua3 42 RGQRGLIVAPPKAGKTMLLQNIAQSIAYN 70 (289)
T ss_dssp TTCEEEEEECSSSSHHHHHHHHHHHHHHH
T ss_pred CCCeeeEeCCCCCCHHHHHHHHHHHHhhc
Confidence 69999999999999999999988765443
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.22 E-value=0.00098 Score=50.76 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+++++||-++|||||++.+.|..
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 79999999999999999999864
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=96.09 E-value=0.0015 Score=47.21 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 030566 5 QLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~g 24 (175)
+|++|.-+||||||+..|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 89999999999999999964
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.0018 Score=50.04 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
++.++||+|+|||.|.+.|+..+.
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCcchhHHHHHHHHhhcc
Confidence 678999999999999999998764
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.04 E-value=0.0014 Score=49.87 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
++++|.-.||||||+++|+|.-
T Consensus 27 ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 27 IVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEeCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999965
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=96.01 E-value=0.002 Score=45.46 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=17.6
Q ss_pred CeEEEEECCCCCcHHHHHHHH
Q 030566 2 GYAQLVIGPAGSGKSTYCSSL 22 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i 22 (175)
|.-+.+.|++|+|||||.-.+
T Consensus 15 g~gvli~G~sg~GKS~la~~l 35 (169)
T d1ko7a2 15 GVGVLITGDSGIGKSETALEL 35 (169)
T ss_dssp TEEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHH
Confidence 566899999999999987544
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.95 E-value=0.0016 Score=49.31 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
++++|.-.||||||+++|+|.-
T Consensus 29 ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 29 IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEcCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999964
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=95.92 E-value=0.0018 Score=49.05 Aligned_cols=20 Identities=40% Similarity=0.635 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 030566 4 AQLVIGPAGSGKSTYCSSLY 23 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~ 23 (175)
.++|+|+.|||||||+..|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 48999999999999999994
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.89 E-value=0.0026 Score=45.69 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
++++|.-.||||||++.|+|...
T Consensus 11 i~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 11 IGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEccCCcHHHHHHHHHhhhc
Confidence 89999999999999999998654
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.85 E-value=0.002 Score=45.20 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl 25 (175)
+.++|..|+|||||++-+..-
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999988654
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.0018 Score=47.49 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
++.|.|.=|||||||++-+..-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6789999999999999988764
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=95.72 E-value=0.01 Score=46.99 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=17.8
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl 25 (175)
..|||++|.|||+++.-++--
T Consensus 46 ~llvG~~GvGKtaiv~~la~~ 66 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQR 66 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHHH
T ss_pred CeEECCCCCCHHHHHHHHHHH
Confidence 579999999999998877654
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.0027 Score=45.90 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.+.+.||+|+||||+.++++..+-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHhcc
Confidence 477899999999999999998654
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=95.69 E-value=0.0025 Score=48.40 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHH---HccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSL---YRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i---~gl~~ 27 (175)
-++|+|+.|||||||...| +|.+.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~ 34 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH 34 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccc
Confidence 3899999999999999999 45543
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.0029 Score=50.14 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=28.5
Q ss_pred CEEEEeCCCcccccccchHHHHHHHHHHhCCCcEEEEEeeeccchhhhhc
Q 030566 100 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQVCIRFRT 149 (175)
Q Consensus 100 ~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tvli~~l~~sH~~~~~~~ 149 (175)
-++++||-.... ....+.+++.+.++.|..+ +++++.+.++.+
T Consensus 278 v~l~lDE~~~~~---~~~~l~~~l~~~Rk~Gv~~----~l~~Qs~~ql~~ 320 (433)
T d1e9ra_ 278 LWLFIDELASLE---KLASLADALTKGRKAGLRV----VAGLQSTSQLDD 320 (433)
T ss_dssp EEEEESCGGGSC---BCSSHHHHHHHCTTTTEEE----EEEESCHHHHHH
T ss_pred eEEEechHhhhc---ccHHHHHHHHHhCCCCceE----EEEeccHHHHHH
Confidence 368889972111 1123445777878889888 889888777643
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.62 E-value=0.0032 Score=46.21 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHccCcc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+.|.||+|+||||+.++++..+..
T Consensus 37 ~Ll~Gp~G~GKtt~a~~~~~~l~~ 60 (239)
T d1njfa_ 37 YLFSGTRGVGKTSIARLLAKGLNC 60 (239)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHC
T ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Confidence 567899999999999999876543
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=95.56 E-value=0.043 Score=36.96 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=25.3
Q ss_pred CCeEEEEECCCCCcHHH-HHHHHHccCccccceeEEe
Q 030566 1 MGYAQLVIGPAGSGKST-YCSSLYRHCETVRRTMHIV 36 (175)
Q Consensus 1 ~Gei~~liG~NGsGKST-Llk~i~gl~~~~~G~I~i~ 36 (175)
+|.+..++||=.||||| |++.+-... ...-++.+.
T Consensus 1 ~G~L~~i~GpMfsGKTteLi~~~~~~~-~~~~kv~~i 36 (139)
T d2b8ta1 1 IGWIEFITGPMFAGKTAELIRRLHRLE-YADVKYLVF 36 (139)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CcEEEEEEccccCHHHHHHHHHHHHHH-HCCCcEEEE
Confidence 68999999999999999 777765543 223345443
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.54 E-value=0.0036 Score=45.48 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHccCc
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
+.|.||+|+|||-|+++++.-..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~ 61 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAK 61 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhc
Confidence 67999999999999999987653
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.53 E-value=0.0043 Score=47.08 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl 25 (175)
+|+..+|+|+.|+|||||+.-++.-
T Consensus 67 kGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 67 KGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 6999999999999999997766543
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=95.44 E-value=0.0041 Score=44.68 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+|++|.-++|||||++.|.+..
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHH
Confidence 8999999999999999998753
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=95.41 E-value=0.0072 Score=46.98 Aligned_cols=32 Identities=19% Similarity=0.054 Sum_probs=25.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccceeEEe
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~ 36 (175)
.+.|=|+=||||||+++.|+..+.... .+.+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~-~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGS-PTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSS-CEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCC-CeEEE
Confidence 467889999999999999999876543 44443
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=95.18 E-value=0.0066 Score=47.18 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=28.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccceeEEeecC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~ 39 (175)
.++|=|+=||||||+++.|+..+......+.+..++
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~EP 42 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEP 42 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEeCc
Confidence 478999999999999999999877654456554443
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=95.01 E-value=0.0071 Score=45.53 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=23.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G 31 (175)
++.+.||.++||||++++|+.++ ...|
T Consensus 106 ~~~l~G~~~tGKS~f~~~i~~~l-g~~~ 132 (267)
T d1u0ja_ 106 TIWLFGPATTGKTNIAEAIAHTV-PFYG 132 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-SCEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh-cchh
Confidence 68899999999999999999998 4333
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=94.91 E-value=0.0048 Score=46.13 Aligned_cols=31 Identities=16% Similarity=0.057 Sum_probs=20.9
Q ss_pred CCCEEEEeCCCcccccccchHHHHHHHHHHhCCCcE
Q 030566 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNV 133 (175)
Q Consensus 98 ~p~lliLDEP~~~~~~~~~~~~~~~l~~l~~~g~tv 133 (175)
+.+++++||- .+.......+++.+...+.++
T Consensus 206 ~~~~i~vDE~-----QD~~~~~~~~l~~~~~~~~~~ 236 (306)
T d1uaaa1 206 KIRYLLVDEY-----QDTNTSQYELVKLLVGSRARF 236 (306)
T ss_dssp TCSEEEESCG-----GGCBHHHHHHHHHHHTTTCCE
T ss_pred HhhHHHHHHH-----HHhhHHHHhhhhhcccCCCcc
Confidence 7899999999 443334444777776655555
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=94.79 E-value=0.0073 Score=46.49 Aligned_cols=19 Identities=32% Similarity=0.572 Sum_probs=17.1
Q ss_pred CCeEEEEECCCCCcHHHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYC 19 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLl 19 (175)
+|++..+.|.+|+|||||-
T Consensus 13 ~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 13 KGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 4889999999999999975
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.66 E-value=0.0081 Score=43.70 Aligned_cols=19 Identities=42% Similarity=0.576 Sum_probs=17.7
Q ss_pred EEEECCCCCcHHHHHHHHH
Q 030566 5 QLVIGPAGSGKSTYCSSLY 23 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~ 23 (175)
+|++|.-++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHH
Confidence 8999999999999999883
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=94.64 E-value=0.0088 Score=46.00 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccC
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~ 26 (175)
++.++||+|+|||.+.+.|+..+
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHHHh
Confidence 56789999999999999999876
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=94.61 E-value=0.0065 Score=45.89 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=13.3
Q ss_pred EEEEECCCCCcHHHHH
Q 030566 4 AQLVIGPAGSGKSTYC 19 (175)
Q Consensus 4 i~~liG~NGsGKSTLl 19 (175)
.+.|.|+.||||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 3668899999999765
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=94.57 E-value=0.0092 Score=46.87 Aligned_cols=22 Identities=45% Similarity=0.795 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHccC
Q 030566 5 QLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+-++||+|+|||-|.|.|+.+.
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eeeeCCCCccHHHHHHHHHhhc
Confidence 6789999999999999999875
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=94.56 E-value=0.0078 Score=46.46 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=17.0
Q ss_pred CCeEEEEECCCCCcHHHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYC 19 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLl 19 (175)
+|++..+.|.+|+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 4889999999999999973
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=94.46 E-value=0.0094 Score=46.23 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.++|=|+=||||||+++.++....
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 378899999999999999987764
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=94.42 E-value=0.02 Score=44.78 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=16.9
Q ss_pred CeEEEEECCCCCcHHHHHHH
Q 030566 2 GYAQLVIGPAGSGKSTYCSS 21 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~ 21 (175)
+.+..|.||.|+||||++..
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHH
T ss_pred CCeEEEEcCCCCCceehHHH
Confidence 45889999999999998744
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=94.42 E-value=0.011 Score=43.08 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 030566 5 QLVIGPAGSGKSTYCSSLYR 24 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~g 24 (175)
++++|.-.||||||+..|+.
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999953
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=94.35 E-value=0.013 Score=44.26 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCccccce
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRT 32 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~ 32 (175)
+|+..+|+|++|+|||+|+..+.--...+...
T Consensus 66 ~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v 97 (276)
T d1fx0a3 66 RGQRELIIGDRQTGKTAVATDTILNQQGQNVI 97 (276)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCCTTTCE
T ss_pred CCceEeeccCCCCChHHHHHHHHhhhcccCce
Confidence 58999999999999999987654443433333
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=94.35 E-value=0.0066 Score=39.71 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHH-HHHHccCccccceeEE
Q 030566 1 MGYAQLVIGPAGSGKSTYC-SSLYRHCETVRRTMHI 35 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLl-k~i~gl~~~~~G~I~i 35 (175)
+|+.+.|.+|.|||||+.+ ..+..........+.+
T Consensus 6 ~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli 41 (140)
T d1yksa1 6 KGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLV 41 (140)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEE
T ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeee
Confidence 5889999999999999544 4444433333333433
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.26 E-value=0.021 Score=40.81 Aligned_cols=40 Identities=28% Similarity=0.340 Sum_probs=31.2
Q ss_pred CCeEEEEE-CCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030566 1 MGYAQLVI-GPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 1 ~Gei~~li-G~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
||.++++. +.-|+||||+.-.++..+.-..-+|.+-+-|+
T Consensus 1 m~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~ 41 (237)
T d1g3qa_ 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 78999999 77899999999999888764334576655554
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.21 E-value=0.018 Score=38.07 Aligned_cols=34 Identities=9% Similarity=0.089 Sum_probs=25.8
Q ss_pred CeEEEEECCCCCcHHHHHHHH-HccCccccce-eEE
Q 030566 2 GYAQLVIGPAGSGKSTYCSSL-YRHCETVRRT-MHI 35 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i-~gl~~~~~G~-I~i 35 (175)
|-++.+.|-+||||||+.+++ +-+.+...|+ |++
T Consensus 6 gf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtl 41 (122)
T d1g8fa3 6 GFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKI 41 (122)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEE
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEE
Confidence 678899999999999999999 4455543333 554
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=94.19 E-value=0.012 Score=45.39 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=17.3
Q ss_pred CCeEEEEECCCCCcHHHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYC 19 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLl 19 (175)
+|++..+.|.+|+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 4889999999999999986
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=93.50 E-value=0.028 Score=41.94 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccCc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
.++++|.+-+|||||++.|.|--.
T Consensus 114 ~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 114 RALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEEecCccchhhhhhhhhccce
Confidence 489999999999999999999654
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.14 E-value=0.019 Score=43.53 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLY 23 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~ 23 (175)
+|+..+|+|+.|+|||||+.-++
T Consensus 67 ~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 67 RGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEeecCCCCChHHHHHHHH
Confidence 58999999999999999976554
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.12 E-value=0.024 Score=41.73 Aligned_cols=19 Identities=47% Similarity=0.548 Sum_probs=17.6
Q ss_pred EEEECCCCCcHHHHHHHHH
Q 030566 5 QLVIGPAGSGKSTYCSSLY 23 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~ 23 (175)
++++|.-+||||||...|+
T Consensus 9 i~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 9 VVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 7999999999999998884
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.10 E-value=0.019 Score=44.70 Aligned_cols=23 Identities=35% Similarity=0.264 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHH---HccCc
Q 030566 5 QLVIGPAGSGKSTYCSSL---YRHCE 27 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i---~gl~~ 27 (175)
+||+|.-|+|||||+..| +|.+.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~~g~i~ 45 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQRAGIIS 45 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcc
Confidence 899999999999999999 46543
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=93.10 E-value=0.016 Score=41.77 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
-++.+.||.++|||+++..|++++.
T Consensus 54 n~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 54 NCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCccHHHHHHHHHHHhC
Confidence 3789999999999999999998863
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.08 E-value=0.18 Score=37.13 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRH 25 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl 25 (175)
+.+|+|||||||||++++|.=+
T Consensus 26 lnvlvG~NgsGKS~iL~Ai~~~ 47 (308)
T d1e69a_ 26 VTAIVGPNGSGKSNIIDAIKWV 47 (308)
T ss_dssp EEEEECCTTTCSTHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 7899999999999999999543
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=93.04 E-value=0.046 Score=40.24 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=22.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G 31 (175)
=+.|.|+.|+|||++.++|-...+....
T Consensus 25 pvlI~Ge~GtGK~~~A~~ih~~s~~~~~ 52 (247)
T d1ny5a2 25 PVLITGESGVGKEVVARLIHKLSDRSKE 52 (247)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHSTTTTS
T ss_pred CEEEECCCCcCHHHHHHHHHHhcCCccc
Confidence 3678999999999999999876554433
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.71 E-value=0.037 Score=39.41 Aligned_cols=25 Identities=20% Similarity=0.060 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
+.-+.+-||+|+||||+.+.++..+
T Consensus 15 ~~~~l~~G~~g~gk~~~a~~l~~~i 39 (198)
T d2gnoa2 15 GISILINGEDLSYPREVSLELPEYV 39 (198)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4457899999999999999998854
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.69 E-value=0.021 Score=42.22 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=17.4
Q ss_pred EEEECCCCCcHHHHHHHH
Q 030566 5 QLVIGPAGSGKSTYCSSL 22 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i 22 (175)
++++|.-++|||||+..|
T Consensus 27 i~iiGHVD~GKSTL~~~L 44 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNI 44 (245)
T ss_dssp EEEEECGGGTHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHH
Confidence 899999999999999999
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.59 E-value=0.087 Score=37.33 Aligned_cols=38 Identities=26% Similarity=0.341 Sum_probs=27.8
Q ss_pred EEEEE-CCCCCcHHHHHHHHHccCccccceeEEeecCcc
Q 030566 4 AQLVI-GPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (175)
Q Consensus 4 i~~li-G~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~ 41 (175)
++++. |.-|+||||+.-.++..+.-..-++.+-+-|+.
T Consensus 3 vIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~ 41 (232)
T d1hyqa_ 3 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT 41 (232)
T ss_dssp EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 56666 889999999999998877644345766555543
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=92.59 E-value=0.029 Score=36.93 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=16.1
Q ss_pred eEEEEECCCCCcHHHHHHHH
Q 030566 3 YAQLVIGPAGSGKSTYCSSL 22 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i 22 (175)
++..|.+|.|||||+++-.+
T Consensus 9 ~~~ll~apTGsGKT~~~~~~ 28 (136)
T d1a1va1 9 QVAHLHAPTGSGKSTKVPAA 28 (136)
T ss_dssp EEEEEECCTTSCTTTHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHH
Confidence 56788999999999987433
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.35 E-value=0.044 Score=46.59 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.+++.+.|++|||||+-.|.|...+
T Consensus 125 nQsIiisGeSGaGKTe~~k~il~yL 149 (712)
T d1d0xa2 125 NQSLLITGESGAGKTENTKKVIQYL 149 (712)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999997654
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=92.30 E-value=0.045 Score=46.29 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.+++.+.|.+|||||+-.|.|...+
T Consensus 86 ~QsIiisGeSGsGKTe~~k~il~yL 110 (684)
T d1lkxa_ 86 NQCVIISGESGAGKTEASKKIMQFL 110 (684)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999886644
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=91.97 E-value=0.051 Score=46.09 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.+++.+-|.+|||||+-.|.|...+
T Consensus 91 ~Q~IiisGeSGaGKTe~~k~il~yL 115 (710)
T d1br2a2 91 DQSILCTGESGAGKTENTKKVIQYL 115 (710)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999886654
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=91.74 E-value=0.029 Score=41.62 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=19.0
Q ss_pred CCeEEEEECCCCCcHHH--HHHHHHcc
Q 030566 1 MGYAQLVIGPAGSGKST--YCSSLYRH 25 (175)
Q Consensus 1 ~Gei~~liG~NGsGKST--Llk~i~gl 25 (175)
+|+.+.+.+|.|||||+ |..++...
T Consensus 8 ~~~~~lv~~~TGsGKT~~~l~~~~~~~ 34 (305)
T d2bmfa2 8 KKRLTIMDLHPGAGKTKRYLPAIVREA 34 (305)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred cCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 58889999999999997 33544443
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.62 E-value=0.028 Score=40.67 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=17.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHH
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSL 22 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i 22 (175)
+|+-+.+++|.|+|||+..-+.
T Consensus 57 ~g~~~~i~apTGsGKT~~~~~~ 78 (237)
T d1gkub1 57 RKESFAATAPTGVGKTSFGLAM 78 (237)
T ss_dssp TTCCEECCCCBTSCSHHHHHHH
T ss_pred CCCCEEEEecCCChHHHHHHHH
Confidence 4777889999999999865433
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=91.09 E-value=0.064 Score=46.10 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.+.+.+.|.+|||||+-.|.|...+
T Consensus 123 ~QsIiisGeSGaGKTe~~K~il~yL 147 (794)
T d2mysa2 123 NQSILITGESGAGKTVNTKRVIQYF 147 (794)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5688999999999999988876654
|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Bay scallop (Aequipecten irradians) [TaxId: 31199]
Probab=90.54 E-value=0.076 Score=45.56 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.+++.|-|.+|||||.-.|.|...+
T Consensus 121 nQ~IiisGESGaGKTe~~K~il~yL 145 (789)
T d1kk8a2 121 NQSCLITGESGAGKTENTKKVIMYL 145 (789)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4789999999999999987776654
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.38 E-value=0.096 Score=34.83 Aligned_cols=28 Identities=36% Similarity=0.409 Sum_probs=21.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcc
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~ 28 (175)
+|.+..++||=.|||||-|=-.+.-++.
T Consensus 1 ~G~L~li~GpMfsGKTt~Li~~~~~~~~ 28 (133)
T d1xbta1 1 RGQIQVILGPMFSGKSTELMRRVRRFQI 28 (133)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CcEEEEEEecccCHHHHHHHHHHHHHHH
Confidence 5899999999999999965444444443
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=89.78 E-value=0.086 Score=36.77 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=26.4
Q ss_pred eEEEEECCC-CCcHHHHHHHHHccCccccceeEEe
Q 030566 3 YAQLVIGPA-GSGKSTYCSSLYRHCETVRRTMHIV 36 (175)
Q Consensus 3 ei~~liG~N-GsGKSTLlk~i~gl~~~~~G~I~i~ 36 (175)
..+.|.|.+ |+||||+.=.|+..+.-..-+|.+.
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~i 36 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 357899997 9999999999988876544456554
|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]
Probab=89.67 E-value=0.11 Score=44.02 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccC
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~ 26 (175)
.+++.+-|++|||||+-.|.+...+
T Consensus 94 ~Q~IiisGeSGsGKTe~~k~il~~l 118 (730)
T d1w7ja2 94 NQSIIVSGESGAGKTVSAKYAMRYF 118 (730)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5688999999999999999886654
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=88.29 E-value=0.18 Score=36.93 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=29.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~ 40 (175)
.++.+.|+=|.||||+.-.++-.+.-..-++.+-+-|+
T Consensus 9 ~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp 46 (296)
T d1ihua1 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (296)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 36778999999999998888887754444677666665
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=87.97 E-value=0.2 Score=36.48 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=29.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccceeEEeecCccc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~~ 42 (175)
+++|.|+=|+||||+.-.|+..+--..=+|.+-+-|++.
T Consensus 3 ~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q~ 41 (269)
T d1cp2a_ 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred EEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 678899999999999988887765433347776677653
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.87 E-value=0.063 Score=37.73 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=14.7
Q ss_pred CeEEEEECCCCCcHHHHH
Q 030566 2 GYAQLVIGPAGSGKSTYC 19 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLl 19 (175)
|.-+.+..|.|||||+..
T Consensus 40 ~~~~il~apTGsGKT~~a 57 (202)
T d2p6ra3 40 GKNLLLAMPTAAGKTLLA 57 (202)
T ss_dssp CSCEEEECSSHHHHHHHH
T ss_pred CCCEEEEcCCCCchhHHH
Confidence 556779999999999863
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=86.21 E-value=0.24 Score=34.11 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=13.7
Q ss_pred EEEECCCCCcHHHHHHHHH
Q 030566 5 QLVIGPAGSGKSTYCSSLY 23 (175)
Q Consensus 5 ~~liG~NGsGKSTLlk~i~ 23 (175)
..+.+|.|||||...-.++
T Consensus 26 ~lv~~pTGsGKT~i~~~~~ 44 (200)
T d1wp9a1 26 CLIVLPTGLGKTLIAMMIA 44 (200)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred eEEEeCCCCcHHHHHHHHH
Confidence 4578999999997544333
|
| >d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: MurCDEF domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF species: Escherichia coli [TaxId: 562]
Probab=85.02 E-value=0.3 Score=33.78 Aligned_cols=30 Identities=10% Similarity=0.000 Sum_probs=24.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHccCcccccee
Q 030566 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTM 33 (175)
Q Consensus 1 ~Gei~~liG~NGsGKSTLlk~i~gl~~~~~G~I 33 (175)
++.+++|.|-| ||||.-.+|+.+++. .|..
T Consensus 1 p~kvI~VTGTn--GKTTt~~mi~~iL~~-~g~~ 30 (214)
T d1gg4a4 1 PARVVALTGSS--GKTSVKEMTAAILSQ-CGNT 30 (214)
T ss_dssp CCEEEEEECSS--CHHHHHHHHHHHHTT-TSCE
T ss_pred CCCEEEEeCCC--cHHHHHHHHHHHHHh-CCCC
Confidence 46799999999 599999999999875 3443
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=84.79 E-value=0.36 Score=35.04 Aligned_cols=39 Identities=23% Similarity=0.403 Sum_probs=28.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHccCccccceeEEeecCcc
Q 030566 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (175)
Q Consensus 3 ei~~liG~NGsGKSTLlk~i~gl~~~~~G~I~i~g~~~~ 41 (175)
.++.+-|+=|+||||+.=.|+-.+.-..-+|.+-+-|++
T Consensus 21 ~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~ 59 (279)
T d1ihua2 21 GLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA 59 (279)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 477888999999999877776665433335777676764
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=84.25 E-value=0.36 Score=32.26 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=19.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHccCc
Q 030566 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (175)
Q Consensus 2 Gei~~liG~NGsGKSTLlk~i~gl~~ 27 (175)
|.+-.++||=.|||||-|=-.+.-++
T Consensus 7 G~l~lI~GpMfSGKTteLi~~~~~~~ 32 (141)
T d1xx6a1 7 GWVEVIVGPMYSGKSEELIRRIRRAK 32 (141)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eeEEEEEeccccHHHHHHHHHHHHhh
Confidence 88999999999999996544443333
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=81.36 E-value=0.52 Score=34.55 Aligned_cols=38 Identities=32% Similarity=0.364 Sum_probs=28.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccCccccc-eeEEeecCccc
Q 030566 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAA 42 (175)
Q Consensus 4 i~~liG~NGsGKSTLlk~i~gl~~~~~G-~I~i~g~~~~~ 42 (175)
++++-|+=|.||||+.-.|+..+.- .| +|.+-+-|++.
T Consensus 4 ~IaisgKGGVGKTT~a~NLA~~LA~-~G~rVLlID~DpQ~ 42 (289)
T d2afhe1 4 QCAIYGKGGIGKSTTTQNLVAALAE-MGKKVMIVGCDPKA 42 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH-TTCCEEEEEECSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEecCCCC
Confidence 5678999999999988888775543 45 57776777654
|