Query 030568
Match_columns 175
No_of_seqs 131 out of 1059
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 01:41:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030568.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030568hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_Q RPL17, 60S ribosomal pr 100.0 6.1E-65 2.1E-69 411.4 15.5 172 1-173 3-174 (183)
2 3iz5_V 60S ribosomal protein L 100.0 8.2E-65 2.8E-69 407.7 13.4 170 1-170 1-170 (171)
3 3u5e_P L20A, YL17, 60S ribosom 100.0 1.2E-63 4E-68 404.8 14.5 164 1-165 1-164 (184)
4 2zkr_r 60S ribosomal protein L 100.0 4.2E-63 1.4E-67 401.6 15.2 163 1-164 1-163 (184)
5 1vq8_R 50S ribosomal protein L 100.0 4.9E-60 1.7E-64 374.9 12.2 151 2-156 3-153 (155)
6 3j21_S 50S ribosomal protein L 100.0 3.1E-60 1.1E-64 376.0 11.0 150 2-155 5-154 (155)
7 3r8s_S 50S ribosomal protein L 100.0 8.6E-42 3E-46 256.6 10.2 109 13-154 1-110 (110)
8 2zjr_P 50S ribosomal protein L 100.0 1.1E-40 3.6E-45 258.5 9.3 111 12-155 21-132 (134)
9 2ftc_M Mitochondrial ribosomal 100.0 4.8E-40 1.7E-44 247.1 12.2 107 18-157 2-110 (110)
10 1i4j_A 50S ribosomal protein L 100.0 4.2E-40 1.5E-44 247.4 11.7 108 13-156 1-109 (110)
11 3bbo_U Ribosomal protein L22; 100.0 1.8E-40 6.3E-45 270.9 0.7 123 2-157 19-142 (199)
12 4fxe_A Antitoxin RELB; toxin/a 73.0 6.6 0.00022 26.9 5.0 34 28-62 15-48 (79)
13 3k2t_A LMO2511 protein; lister 58.1 5.3 0.00018 25.8 2.0 16 36-51 10-25 (57)
14 3lvl_A NIFU-like protein; prot 57.1 21 0.00072 26.2 5.5 70 14-106 56-125 (129)
15 3ka5_A Ribosome-associated pro 50.8 8.2 0.00028 25.7 2.0 16 36-51 10-25 (65)
16 3lyv_A Ribosome-associated fac 42.8 8 0.00027 25.8 1.0 15 37-51 12-26 (66)
17 4eb5_C NIFU protein (NIFU-1); 39.9 1.2E+02 0.0041 23.0 7.6 69 15-105 51-119 (153)
18 3fau_A NEDD4-binding protein 2 38.2 26 0.0009 23.2 3.1 36 36-71 5-47 (82)
19 2d9i_A NEDD4-binding protein 2 36.7 34 0.0011 23.4 3.5 37 36-72 13-56 (96)
20 2z7e_A ISCU protein, NIFU-like 30.5 69 0.0024 24.4 4.7 71 14-106 55-125 (157)
21 2vkc_A NEDD4-binding protein 2 26.2 53 0.0018 24.0 3.3 36 36-71 58-100 (135)
22 2qq4_A Iron-sulfur cluster bio 26.0 75 0.0026 23.4 4.1 37 15-51 57-93 (138)
23 1xjs_A NIFU-like protein; SR17 25.7 75 0.0026 23.7 4.0 37 14-50 58-94 (147)
24 1su0_B NIFU like protein ISCU; 23.9 94 0.0032 23.5 4.4 83 14-103 57-142 (159)
25 2zqe_A MUTS2 protein; alpha/be 23.7 44 0.0015 22.5 2.2 18 36-53 9-26 (83)
26 3shg_B VBHA; ampylation, adeny 22.6 62 0.0021 21.2 2.6 22 94-115 12-33 (61)
27 3ouv_A Serine/threonine protei 20.6 43 0.0015 21.2 1.6 15 36-50 13-27 (71)
No 1
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q
Probab=100.00 E-value=6.1e-65 Score=411.44 Aligned_cols=172 Identities=53% Similarity=0.820 Sum_probs=154.9
Q ss_pred CccccCCCCCCCceEEEeeCCCccCHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCcchhhhccCCCCC
Q 030568 1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNG 80 (175)
Q Consensus 1 ~~~ys~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~kk~~vp~~ry~~g~~~~~~~~~~~~~~ 80 (175)
|++||++|+||+++++|.++++++||+|+++||++||||++++|+.+|++|+++|+||||++||+||||++|+++ |||.
T Consensus 3 m~~Ys~~~~~p~k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~K~~vPfrrynggvg~~~q~k~-~g~~ 81 (183)
T 4a17_Q 3 KTNYSREPANQAKAVKTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTGCIGRTAQAHE-FGRT 81 (183)
T ss_dssp CCCCSSCCSCTTSEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHTTSSCEECCSCCTTCCBCGGGGG-TTCS
T ss_pred ccccCCCCCCCCeeEEEEeCCccCchHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccchhhhh-cCCc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccccccCCCccceeccCCeeEEEEeeeCCccCCC
Q 030568 81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 160 (175)
Q Consensus 81 ~gr~pkKaA~~ilk~L~sa~aNA~~kglD~d~L~I~~i~v~kG~~~kr~~~RArGRa~~~~k~~~hI~Ivl~E~~~~~~k 160 (175)
+||||+|+|++|+++|+||++||+++|||+|+|||+||+||+|++++|++|||+||++|+++++|||||+|+|.+++|||
T Consensus 82 ~Gr~PkKaa~~ilklLksA~aNAe~kgLD~d~L~I~hi~Vnkgp~~kR~~pRA~GRa~pi~k~~~HIeiil~Eke~~v~k 161 (183)
T 4a17_Q 82 QGRWPVKSVKVILGLLDNLSANAQAKSLNTANLVIQHGQVNRAQKGRRRTYRAHGRINPYLNSGCHVEIFAQEVAAKVRK 161 (183)
T ss_dssp BEECCHHHHHHHHHHHHHHHHHTTTTTCCSTTEEEEEEEEEECCCEEEEEEETTTEEEEEEECCEEEEEEEEECCCC---
T ss_pred cCcCcHHHHHHHHHHHHHHHHHHHhcCCChhheEEEEEEECCCCcccCcCccCCCCcCCccCCCCCEEEEEeeccccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCCC
Q 030568 161 EPETQLASRKPRT 173 (175)
Q Consensus 161 ~~~~~~~~~~~~~ 173 (175)
|+|..-.-.|+++
T Consensus 162 ~~~~~~~~k~~~~ 174 (183)
T 4a17_Q 162 EAPKDAAKKVPKT 174 (183)
T ss_dssp -------------
T ss_pred chhhhhhcccccc
Confidence 9887665566654
No 2
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_V
Probab=100.00 E-value=8.2e-65 Score=407.67 Aligned_cols=170 Identities=85% Similarity=1.264 Sum_probs=165.9
Q ss_pred CccccCCCCCCCceEEEeeCCCccCHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCcchhhhccCCCCC
Q 030568 1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNG 80 (175)
Q Consensus 1 ~~~ys~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~kk~~vp~~ry~~g~~~~~~~~~~~~~~ 80 (175)
|.+||++|+|++++++|.++++++||||+++||++||||++++|+.||++|+++|+||||++||+|+||++|++++|||.
T Consensus 1 m~~Ys~~~~~~~~~akA~~~~lrvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPf~r~~~gvg~~~q~~~~~~~~ 80 (171)
T 3iz5_V 1 MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNG 80 (171)
T ss_dssp CCSCSSCCSCTTTEEEEEEEEEESCHHHHHHHHHHSCSCCSHHHHHHHHHHHHTSSCEECSSCCSSCCCCSCCBTTBSCS
T ss_pred CCcccCCCCCCCeeEEEEeCCcccCHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999559999
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccccccCCCccceeccCCeeEEEEeeeCCccCCC
Q 030568 81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 160 (175)
Q Consensus 81 ~gr~pkKaA~~ilk~L~sa~aNA~~kglD~d~L~I~~i~v~kG~~~kr~~~RArGRa~~~~k~~~hI~Ivl~E~~~~~~k 160 (175)
+||||+|+|++|+++|+||++||+++|||+|+|||+||+||+|++++|++|||+||++++++++|||||+|+|.+++|||
T Consensus 81 ~gr~PkKaa~~ilklL~sA~aNAe~kglD~d~L~I~~i~vnkgp~~kR~~pRA~GRa~p~~k~~~HI~vil~E~~~~v~k 160 (171)
T 3iz5_V 81 QGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKK 160 (171)
T ss_dssp CEECCHHHHHHHHHHHHHHHHHHHHHTCCSSCCEEEEEEEEECCCBCCEEEETTTEEEECCBCEEEEEEEEETTHHHHTT
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEeccCCcccCCCCCCCCCCCcccCCCccEEEEEeecCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccC
Q 030568 161 EPETQLASRK 170 (175)
Q Consensus 161 ~~~~~~~~~~ 170 (175)
|+|+...+++
T Consensus 161 ~~~~~~~~~~ 170 (171)
T 3iz5_V 161 EPESQIAARK 170 (171)
T ss_dssp TTCCSSCCCC
T ss_pred chhhhhhhcc
Confidence 9998877654
No 3
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 4b6a_P 1s1i_N 3izc_V 3izs_V 3jyw_N
Probab=100.00 E-value=1.2e-63 Score=404.75 Aligned_cols=164 Identities=60% Similarity=0.909 Sum_probs=160.6
Q ss_pred CccccCCCCCCCceEEEeeCCCccCHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCcchhhhccCCCCC
Q 030568 1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNG 80 (175)
Q Consensus 1 ~~~ys~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~kk~~vp~~ry~~g~~~~~~~~~~~~~~ 80 (175)
|++||++|+|++++++|.++++++||+|+++||++||||++++|+.||++|+++|+||||++||+||||++|+++ |||+
T Consensus 1 m~~Ys~~~~~~~k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~k~~VPf~rf~~gvg~~~q~~~-~g~~ 79 (184)
T 3u5e_P 1 MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKE-FGVT 79 (184)
T ss_dssp -CCCSCCCSCGGGEEEEEEEEECSCHHHHHHHHTTTTTCBHHHHHHHHHHHHTTSSCEECCSSCTTCCCCGGGGG-GTCS
T ss_pred CCccCCCCCCCCceEEEEeCCccccHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCCcccchhhc-cCCc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccccccCCCccceeccCCeeEEEEeeeCCccCCC
Q 030568 81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 160 (175)
Q Consensus 81 ~gr~pkKaA~~ilk~L~sa~aNA~~kglD~d~L~I~~i~v~kG~~~kr~~~RArGRa~~~~k~~~hI~Ivl~E~~~~~~k 160 (175)
+||||+|+|++|+++|+||++||+++|||+|+|||+||+||+|++++|++|||+||++++++++|||||+|+|.+++|||
T Consensus 80 ~GR~PkKaa~~ilklLksA~aNAe~kgLD~d~L~I~~i~Vnkgp~~kR~~pRA~GRa~p~~k~~~HI~vil~E~e~~v~k 159 (184)
T 3u5e_P 80 KARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVTEKEEAVAK 159 (184)
T ss_dssp CEECCHHHHHHHHHHHHHHHHHHHHTTCCTTTEEEEEEEEEECCCEEEEEEEGGGEEEEEEECCEEEEEEEEECCCCCCC
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCCcccCCCCCCCCCCCcccCCCccEEEEEeeccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccccc
Q 030568 161 EPETQ 165 (175)
Q Consensus 161 ~~~~~ 165 (175)
|+|..
T Consensus 160 ~~~~~ 164 (184)
T 3u5e_P 160 AAEKK 164 (184)
T ss_dssp CCCCC
T ss_pred cHHHH
Confidence 98754
No 4
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=4.2e-63 Score=401.60 Aligned_cols=163 Identities=67% Similarity=1.050 Sum_probs=149.1
Q ss_pred CccccCCCCCCCceEEEeeCCCccCHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCcchhhhccCCCCC
Q 030568 1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNG 80 (175)
Q Consensus 1 ~~~ys~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~kk~~vp~~ry~~g~~~~~~~~~~~~~~ 80 (175)
|++||++|+|++++++|.++++++||+|+++||++||||++++|+.||++||++|+||||+|||+||||++|+++ |||+
T Consensus 1 m~~Ys~~~~~~~k~akA~~~~lrvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPF~r~~~gvg~~~q~~~-~~~~ 79 (184)
T 2zkr_r 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQ-WGWT 79 (184)
T ss_dssp -CCCSSCCSCTTTEEEEEECSCCSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCCSTTS-CSCS
T ss_pred CCccCCCCCCCCeeEEEEecCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeccCCCcccccccc-cccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccccccCCCccceeccCCeeEEEEeeeCCccCCC
Q 030568 81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 160 (175)
Q Consensus 81 ~gr~pkKaA~~ilk~L~sa~aNA~~kglD~d~L~I~~i~v~kG~~~kr~~~RArGRa~~~~k~~~hI~Ivl~E~~~~~~k 160 (175)
+||||+|+|++|+++|+||++||+++|||+|+|||+||+||+|++++|++|||+||++++++++|||||+|+|.++.+||
T Consensus 80 ~GR~PkKaa~~ilklLksA~aNAe~kglD~d~L~I~~i~Vnkg~~~kR~~pRA~GRa~p~~k~~~HI~vil~E~~~~v~k 159 (184)
T 2zkr_r 80 QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159 (184)
T ss_dssp BEECCHHHHHHHHHHHHHHHHHHHHHTSCTTTCEEEEEEEC-CCCEEEEEEETTTEEEEEEEC-CCEEEEEECC------
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCccCcCCCCCCCCCCCCccCCCceEEEEEEEcCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccc
Q 030568 161 EPET 164 (175)
Q Consensus 161 ~~~~ 164 (175)
|+|+
T Consensus 160 ~~~~ 163 (184)
T 2zkr_r 160 PEEE 163 (184)
T ss_dssp ----
T ss_pred chhh
Confidence 8765
No 5
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Probab=100.00 E-value=4.9e-60 Score=374.90 Aligned_cols=151 Identities=32% Similarity=0.533 Sum_probs=146.9
Q ss_pred ccccCCCCCCCceEEEeeCCCccCHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCcchhhhccCCCCCC
Q 030568 2 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQ 81 (175)
Q Consensus 2 ~~ys~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~kk~~vp~~ry~~g~~~~~~~~~~~~~~~ 81 (175)
++||+ |+|++++++|.++++++||||+++||++||||++++|+.||+||+++|+||||++||+||||++|+ |||++
T Consensus 3 ~~Ys~-~~~~~k~~kA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~---~~~~~ 78 (155)
T 1vq8_R 3 ISYSV-EADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKV---DGWDA 78 (155)
T ss_dssp CCCSS-CCCGGGEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTC---SSSSB
T ss_pred cccCC-CCCCCceEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhcceeccceeccCCCCccccc---ccccc
Confidence 68999 899999999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccccccCCCccceeccCCeeEEEEeeeCCc
Q 030568 82 GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE 156 (175)
Q Consensus 82 gr~pkKaA~~ilk~L~sa~aNA~~kglD~d~L~I~~i~v~kG~~~kr~~~RArGRa~~~~k~~~hI~Ivl~E~~~ 156 (175)
||||+|+|++|+++|+||++||+++|||+|+|||+||+||+|+++||++|||+||++++++++|||||+|+|.++
T Consensus 79 gr~PkKaa~~ilklL~sA~aNAe~kgld~d~L~I~~i~v~kg~~~kR~~pRA~GRa~~~~k~~~HI~vil~E~~~ 153 (155)
T 1vq8_R 79 GRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEPEV 153 (155)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTTSCGGGSEEEEEEEEEEEEECCEEECGGGCEEECCEEEEEEEEEEECC--
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCccccCCCCCCCCCCCceeCCCccEEEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999754
No 6
>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.1e-60 Score=375.99 Aligned_cols=150 Identities=37% Similarity=0.533 Sum_probs=147.3
Q ss_pred ccccCCCCCCCceEEEeeCCCccCHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCcchhhhccCCCCCC
Q 030568 2 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQ 81 (175)
Q Consensus 2 ~~ys~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~kk~~vp~~ry~~g~~~~~~~~~~~~~~~ 81 (175)
|+||++|+|++++++|.++++++||||+++||++||||++++|+.||+||+++|+||||++||+||||++| |||++
T Consensus 5 ~~Ys~~~~~~~~~akA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~----~~~~~ 80 (155)
T 3j21_S 5 FGYSFQNFDPKRMARASARDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALKRPVPLKRYNDSQGHKPG----KGFGP 80 (155)
T ss_dssp -CCCSCCCHHHHEEEEEEEEEESCHHHHHHHHHHHTTCBHHHHHHHHHHHHHTCSCEECCSSCTTCCBCCS----SSCSB
T ss_pred eecccCCCCCCeeEEEEeCCcccCHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccceeeeeecCCCccccc----cCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccccccCCCccceeccCCeeEEEEeeeCC
Q 030568 82 GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKE 155 (175)
Q Consensus 82 gr~pkKaA~~ilk~L~sa~aNA~~kglD~d~L~I~~i~v~kG~~~kr~~~RArGRa~~~~k~~~hI~Ivl~E~~ 155 (175)
||||+|+|++|+++|+||++||+++|||+|+|||+||+||+|++++|++|||+||++++++++|||||+|+|.+
T Consensus 81 gr~PkKaa~~ilklL~sA~aNAe~kgld~d~L~I~~i~vnkgp~~kR~~pRA~GR~~~~~k~~~HI~vil~E~~ 154 (155)
T 3j21_S 81 GRYPVKVAKAIKKVLLNVKNNAVQKGLDPDKLKIIHIAAHKGPVLRGWYPRAFGRATPFNEQTTHIEVVVEEIR 154 (155)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEEEECCEEECSTTCEEECCEEEEEEEEEEECCC
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEecCCCcccCCCCCCCCCCCceecCCccEEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999975
No 7
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=100.00 E-value=8.6e-42 Score=256.64 Aligned_cols=109 Identities=26% Similarity=0.345 Sum_probs=106.0
Q ss_pred ceEEEeeCCCccCHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCcchhhhccCCCCCCCCCchhhhHHH
Q 030568 13 KSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFI 92 (175)
Q Consensus 13 ~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~kk~~vp~~ry~~g~~~~~~~~~~~~~~~gr~pkKaA~~i 92 (175)
|+++|.++++++||+|+++||++||||++++|+.||+| ||+|+|+.|
T Consensus 1 me~kA~~~~ir~S~kK~r~va~~IrG~~v~~Al~~L~f---------------------------------~pkkaa~~v 47 (110)
T 3r8s_S 1 METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTY---------------------------------TNKKAAVLV 47 (110)
T ss_dssp CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHH---------------------------------CCCHHHHHH
T ss_pred CeEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHhh---------------------------------CCHHHHHHH
Confidence 57999999999999999999999999999999999994 899999999
Q ss_pred HHHHHHHHHHHHHc-CCCCCCeEEEEEEEecCCccccccccCCCccceeccCCeeEEEEeeeC
Q 030568 93 LDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEK 154 (175)
Q Consensus 93 lk~L~sa~aNA~~k-glD~d~L~I~~i~v~kG~~~kr~~~RArGRa~~~~k~~~hI~Ivl~E~ 154 (175)
+++|+||++||+++ |+|+|+|||+|++||+|+++||++|||+||++++++++|||||+|+|+
T Consensus 48 ~k~L~sA~aNAe~~~gld~d~L~I~~~~v~~g~~~KR~~pRA~GR~~~i~k~~~HI~vvl~ek 110 (110)
T 3r8s_S 48 KKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR 110 (110)
T ss_dssp HHHHHHHHHHHHHHSSCCTTSCEEEEEEEEEEEEEEEEEECGGGCEEEEEEEEEEEEEEEECC
T ss_pred HHHHHHHHHhHHHhcCCChhheEEEEEEeCCCCccCCCCcCCCCCCCCcccCCccEEEEEecC
Confidence 99999999999986 999999999999999999999999999999999999999999999984
No 8
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...
Probab=100.00 E-value=1.1e-40 Score=258.55 Aligned_cols=111 Identities=23% Similarity=0.266 Sum_probs=107.3
Q ss_pred CceEEEeeCCCccCHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCcchhhhccCCCCCCCCCchhhhHH
Q 030568 12 TKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKF 91 (175)
Q Consensus 12 ~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~kk~~vp~~ry~~g~~~~~~~~~~~~~~~gr~pkKaA~~ 91 (175)
+++++|.++++++||+|+++||++||||++++|+.||+| ||+|+|+.
T Consensus 21 ~~~akA~~~~irvSpkK~r~Va~~IRG~~v~eAl~~L~f---------------------------------~pkKaA~~ 67 (134)
T 2zjr_P 21 RKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRF---------------------------------IPRSASEP 67 (134)
T ss_dssp CCTTEEEEEEESSCHHHHHHHHHHSTTSBHHHHHHHHHH---------------------------------CCCTTHHH
T ss_pred ceEEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHHH---------------------------------CcHhHHHH
Confidence 467999999999999999999999999999999999994 89999999
Q ss_pred HHHHHHHHHHHHHH-cCCCCCCeEEEEEEEecCCccccccccCCCccceeccCCeeEEEEeeeCC
Q 030568 92 ILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKE 155 (175)
Q Consensus 92 ilk~L~sa~aNA~~-kglD~d~L~I~~i~v~kG~~~kr~~~RArGRa~~~~k~~~hI~Ivl~E~~ 155 (175)
|+++|+||++||++ +|+|+|+|||+||+||+|+++||++|||+||+++|++++|||+|+|+|.+
T Consensus 68 v~klL~sA~aNAe~n~gld~d~L~I~~i~V~~Gp~lKR~~pRA~GRa~~i~k~tsHItvvl~E~~ 132 (134)
T 2zjr_P 68 VAKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIVAEKG 132 (134)
T ss_dssp HHHHHTTTHHHHTTTTCCCGGGEEEEEEEEEECCCEEEEEECSTTCEEEEEECCEEEEEEEEECC
T ss_pred HHHHHHHHHHhHHHhcCCChhheEEEEEEECCCccccCCCCCCCCCCcccccCCceEEEEEEecC
Confidence 99999999999995 79999999999999999999999999999999999999999999999975
No 9
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=100.00 E-value=4.8e-40 Score=247.11 Aligned_cols=107 Identities=24% Similarity=0.288 Sum_probs=102.4
Q ss_pred eeCCCccCHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCcchhhhccCCCCCCCCCchhhhHHHHHHHH
Q 030568 18 RGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLK 97 (175)
Q Consensus 18 ~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~kk~~vp~~ry~~g~~~~~~~~~~~~~~~gr~pkKaA~~ilk~L~ 97 (175)
..+++++||+|+++||++||||++++|+.||+ | ||+|+|+.|+++|+
T Consensus 2 ~~~~ir~SpkK~r~va~~IrG~~v~eAl~~L~---------------------------f------~pkkaa~~v~klL~ 48 (110)
T 2ftc_M 2 CRRQIKYSKDKMWYLAKLIRGMSIDQALAQLE---------------------------F------NDKKGAKIIKEVLL 48 (110)
T ss_pred CcccceeCHHHHHHHHHHHcCCcHHHHHHHHH---------------------------H------CCHHHHHHHHHHHH
Confidence 36799999999999999999999999999999 4 89999999999999
Q ss_pred HHHHHHHH-cCCC-CCCeEEEEEEEecCCccccccccCCCccceeccCCeeEEEEeeeCCcc
Q 030568 98 NAESNAEV-KGLD-VDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEP 157 (175)
Q Consensus 98 sa~aNA~~-kglD-~d~L~I~~i~v~kG~~~kr~~~RArGRa~~~~k~~~hI~Ivl~E~~~~ 157 (175)
||++||++ +|+| +|+|||+|++||+|+++||++|||+||++++++++|||||+|+|.+++
T Consensus 49 sA~aNA~~~~gld~~~~L~I~~~~v~~g~~~KR~~prA~GRa~~i~k~~~HI~vvl~e~~~p 110 (110)
T 2ftc_M 49 EAQDMAVRDHNVEFRSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPP 110 (110)
T ss_pred HHHHhHHHhcCCCCccCeEEEEEEECCCCcccCCCCCCCCCCCccccCCccEEEEEEeCCCC
Confidence 99999998 7999 899999999999999999999999999999999999999999997653
No 10
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=100.00 E-value=4.2e-40 Score=247.41 Aligned_cols=108 Identities=26% Similarity=0.300 Sum_probs=104.1
Q ss_pred ceEEEeeCCCccCHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCcchhhhccCCCCCCCCCchhhhHHH
Q 030568 13 KSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFI 92 (175)
Q Consensus 13 ~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~kk~~vp~~ry~~g~~~~~~~~~~~~~~~gr~pkKaA~~i 92 (175)
++++|.++++++||+|+++||++||||++++|+.||+| ||+|+|+.|
T Consensus 1 ~~~kA~~~~ir~SpkK~r~va~~IrG~~v~~Al~~L~~---------------------------------~pkkaa~~v 47 (110)
T 1i4j_A 1 MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRY---------------------------------TNKRGAYFV 47 (110)
T ss_dssp CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHH---------------------------------CCCTTHHHH
T ss_pred CeEEEEeCCccCCHHHHHHHHHHHcCCcHHHHHHHHHH---------------------------------CCHHHHHHH
Confidence 46899999999999999999999999999999999994 899999999
Q ss_pred HHHHHHHHHHHHHc-CCCCCCeEEEEEEEecCCccccccccCCCccceeccCCeeEEEEeeeCCc
Q 030568 93 LDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE 156 (175)
Q Consensus 93 lk~L~sa~aNA~~k-glD~d~L~I~~i~v~kG~~~kr~~~RArGRa~~~~k~~~hI~Ivl~E~~~ 156 (175)
+++|+||++||+++ |+|+|+|||+|++||+|++ ++|||+||++++++++|||||+|+|.++
T Consensus 48 ~klL~sA~aNAe~n~gld~d~L~I~~~~v~~g~~---~~pRA~GRa~~i~k~~~HItvvl~e~~~ 109 (110)
T 1i4j_A 48 AKVLESAAANAVNNHDALEDRLYVKAAYVDEGPA---VLPRARGRADIIKKRTSHITVILGEKHG 109 (110)
T ss_dssp HHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEEEE---ECSCSSSCCCSCCEEEEEEEEEEEESSC
T ss_pred HHHHHHHHHhHHHhcCCChhheEEEEEEECCCCe---EeecCCCCCcccccCCeeEEEEEEecCC
Confidence 99999999999987 9999999999999999999 9999999999999999999999999753
No 11
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=1.8e-40 Score=270.91 Aligned_cols=123 Identities=22% Similarity=0.304 Sum_probs=108.9
Q ss_pred ccccCCCCCCCceEEEeeCCCccCHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCcchhhhccCCCCCC
Q 030568 2 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQ 81 (175)
Q Consensus 2 ~~ys~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~kk~~vp~~ry~~g~~~~~~~~~~~~~~~ 81 (175)
.+||.+|.|++++++|.++++++||+|+++||++||||++++|+.||+ |
T Consensus 19 y~~~~~~~n~~~eakA~~r~iRvSpkK~R~Vad~IRG~~V~eAl~iL~---------------------------f---- 67 (199)
T 3bbo_U 19 YGLHHPEPGKCDEITTRGYSISMSVDKARRVIDQIRGRSYAETLMILE---------------------------L---- 67 (199)
T ss_dssp -----------CCBCCCCSCCSSCSSSSSTTHHHHTTCBTTTTTTTGG---------------------------G----
T ss_pred ccCCCCCCCCCeEEEEEeCCccccHHHHHHHHHHHCCCcHHHHHHHHH---------------------------H----
Confidence 467888899999999999999999999999999999999999999999 4
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHH-cCCCCCCeEEEEEEEecCCccccccccCCCccceeccCCeeEEEEeeeCCcc
Q 030568 82 GRWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEP 157 (175)
Q Consensus 82 gr~pkKaA~~ilk~L~sa~aNA~~-kglD~d~L~I~~i~v~kG~~~kr~~~RArGRa~~~~k~~~hI~Ivl~E~~~~ 157 (175)
+|+|+|..|+++|+||++||++ +|+|+|+|||+||+||+|+++||++|||+||+++|++++|||||+|+|.+++
T Consensus 68 --~PkKaA~~V~KlLkSA~ANAe~n~GLD~d~L~I~~i~VnkGp~lKR~~pRArGRa~~I~KrtsHItVVL~E~~~~ 142 (199)
T 3bbo_U 68 --MPYRACYPIFKLIYSAAANASHNKQFNKANLIISKAEVNKGITLKKVKPRARGRSYMILRPTCHITIVLRDITHF 142 (199)
T ss_dssp --CCCTTHHHHHHHHHHHTTHHHHTSSCCSSSCEEEECCCCBCCCCCCCCCSSSSCSCCCCCCCBCCCCEEECCCCC
T ss_pred --CCHhHHHHHHHHHHHHHHhHHhccCCChhheEEEEEEECCCCcccCCCCCCCCCCCcccCCCccEEEEEeeCCch
Confidence 6999999999999999999998 6999999999999999999999999999999999999999999999998664
No 12
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=73.02 E-value=6.6 Score=26.89 Aligned_cols=34 Identities=18% Similarity=0.387 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcccccceee
Q 030568 28 NTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTR 62 (175)
Q Consensus 28 K~~~va~~IrG~~v~~A~~~L~~V~~kk~~vp~~r 62 (175)
.+..++..+ |++..+|+.++-.-+...+.+||.-
T Consensus 15 ~a~~v~~~l-Gl~~s~Ai~~fl~~v~~~~~iPF~~ 48 (79)
T 4fxe_A 15 RSYAALEKM-GVTPSEALRLMLEYIADNERLPFKQ 48 (79)
T ss_dssp HHHHHHHHH-TCCHHHHHHHHHHHHHHHSSCSSCC
T ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHHHhCCCCCcc
Confidence 566788888 9999999998887778888899754
No 13
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=58.06 E-value=5.3 Score=25.83 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=13.4
Q ss_pred HhCCCHHHHHHHHHHH
Q 030568 36 LRKLSLTKAKRYLEDV 51 (175)
Q Consensus 36 IrG~~v~~A~~~L~~V 51 (175)
++=|+++||+.||+.+
T Consensus 10 ~kpmsveEAv~qmel~ 25 (57)
T 3k2t_A 10 LKPMDSEEAVLQMNLL 25 (57)
T ss_dssp -CCBCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhC
Confidence 5679999999999974
No 14
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=57.10 E-value=21 Score=26.21 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=49.7
Q ss_pred eEEEeeCCCccCHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCcchhhhccCCCCCCCCCchhhhHHHH
Q 030568 14 SCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFIL 93 (175)
Q Consensus 14 ~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~kk~~vp~~ry~~g~~~~~~~~~~~~~~~gr~pkKaA~~il 93 (175)
.++-.+...-+|.==+-.++.+|+|++++||..+...-+...-.. + . --.++|....
T Consensus 56 d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~~i~~~L~l------------------~---p--~r~~Ca~La~ 112 (129)
T 3lvl_A 56 DARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELEL------------------P---P--VKIHCSILAE 112 (129)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCCHHHHHHHHTC------------------C---G--GGGHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC------------------C---c--cchhHHHHHH
Confidence 345556667777777889999999999999998766432211100 0 0 2368888899
Q ss_pred HHHHHHHHHHHHc
Q 030568 94 DLLKNAESNAEVK 106 (175)
Q Consensus 94 k~L~sa~aNA~~k 106 (175)
+.|+.|+.+.+.+
T Consensus 113 ~Al~~Al~~y~~k 125 (129)
T 3lvl_A 113 DAIKAAIADYKSK 125 (129)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 15
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=50.78 E-value=8.2 Score=25.70 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=13.5
Q ss_pred HhCCCHHHHHHHHHHH
Q 030568 36 LRKLSLTKAKRYLEDV 51 (175)
Q Consensus 36 IrG~~v~~A~~~L~~V 51 (175)
++=|+++||+.||+.+
T Consensus 10 ~kpMsveEAv~qmel~ 25 (65)
T 3ka5_A 10 IKPMSEEEAVLEMELL 25 (65)
T ss_dssp CSCBCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhC
Confidence 3568999999999974
No 16
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=42.76 E-value=8 Score=25.80 Aligned_cols=15 Identities=13% Similarity=0.306 Sum_probs=12.7
Q ss_pred hCCCHHHHHHHHHHH
Q 030568 37 RKLSLTKAKRYLEDV 51 (175)
Q Consensus 37 rG~~v~~A~~~L~~V 51 (175)
+=|+++||+.||+.+
T Consensus 12 kpMsveEAv~qMel~ 26 (66)
T 3lyv_A 12 KPMDVEEARLQMELL 26 (66)
T ss_dssp CEECHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHcC
Confidence 458999999999963
No 17
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=39.94 E-value=1.2e+02 Score=22.96 Aligned_cols=69 Identities=13% Similarity=0.098 Sum_probs=48.1
Q ss_pred EEEeeCCCccCHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCcchhhhccCCCCCCCCCchhhhHHHHH
Q 030568 15 CKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILD 94 (175)
Q Consensus 15 ~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~kk~~vp~~ry~~g~~~~~~~~~~~~~~~gr~pkKaA~~ilk 94 (175)
++-.+...-+|.-=+-.++.+|+|+++++|..+...-++. +-+|++ . .-.++|..-.+
T Consensus 51 ~~F~g~GCais~ASaS~mtelv~GKtleEA~~i~~~~i~~--------~L~glp------------p--~Ri~CA~La~~ 108 (153)
T 4eb5_C 51 IKFQTFGCAAAIATSSMATEMAKGKTIEEALKITRDAVAE--------ALGGLP------------K--QKMHCSNLAAD 108 (153)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTTCBHHHHTTCCHHHHHH--------HHTCCC------------T--TSHHHHHHHHH
T ss_pred EEEEEeCcHHHHHHHHHHHHHHcCCCHHHHHHhhHHHHHH--------HhcCCC------------c--chhHHHHHHHH
Confidence 4555666677777788999999999999999764432110 001111 0 24688999999
Q ss_pred HHHHHHHHHHH
Q 030568 95 LLKNAESNAEV 105 (175)
Q Consensus 95 ~L~sa~aNA~~ 105 (175)
.|+.|+.+...
T Consensus 109 AL~~Al~~y~~ 119 (153)
T 4eb5_C 109 ALRRAIVDYFR 119 (153)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 18
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=38.18 E-value=26 Score=23.23 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=21.3
Q ss_pred HhCCCHHHHHHHHHHHhhcc-------cccceeeecCCCcchh
Q 030568 36 LRKLSLTKAKRYLEDVMAHK-------QAIPFTRFCRGVGRTA 71 (175)
Q Consensus 36 IrG~~v~~A~~~L~~V~~kk-------~~vp~~ry~~g~~~~~ 71 (175)
+.||+++||+..|+..+... ..++....--|.|.++
T Consensus 5 LHGl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~GkG~hS 47 (82)
T 3fau_A 5 LHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHS 47 (82)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC----
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCC
Confidence 36999999999998876643 2344444444555444
No 19
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=36.68 E-value=34 Score=23.41 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=24.9
Q ss_pred HhCCCHHHHHHHHHHHhhcc-------cccceeeecCCCcchhh
Q 030568 36 LRKLSLTKAKRYLEDVMAHK-------QAIPFTRFCRGVGRTAQ 72 (175)
Q Consensus 36 IrG~~v~~A~~~L~~V~~kk-------~~vp~~ry~~g~~~~~~ 72 (175)
+.||+++||+..|...++.- .-++...---|.|.++.
T Consensus 13 LHGl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v~IIhGkG~hS~ 56 (96)
T 2d9i_A 13 LHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQ 56 (96)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSGGGT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECcCCCCC
Confidence 46999999999998876642 33444444456666653
No 20
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=30.50 E-value=69 Score=24.36 Aligned_cols=71 Identities=8% Similarity=0.020 Sum_probs=48.7
Q ss_pred eEEEeeCCCccCHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCcchhhhccCCCCCCCCCchhhhHHHH
Q 030568 14 SCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFIL 93 (175)
Q Consensus 14 ~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~kk~~vp~~ry~~g~~~~~~~~~~~~~~~gr~pkKaA~~il 93 (175)
.++-.+...-+|.-=+-.++.+|+|+++++|+.+...-+...- +++ +. .-.++|-.-.
T Consensus 55 d~~F~~~GCais~ASaS~mte~v~Gkt~~EA~~i~~~~i~e~L--------g~l------------~p--~R~~Ca~La~ 112 (157)
T 2z7e_A 55 DVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEEL--------GGL------------PP--QKIHCTNLGL 112 (157)
T ss_dssp EEEEEEESCTTHHHHHHHHHHHHTTSBHHHHHHCCHHHHHHHH--------TCC------------CC--SSCCTTCCHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHhccHHHHh--------ccc------------Cc--chhHhHHHHH
Confidence 3566667777888888999999999999999987664221100 000 01 2356777777
Q ss_pred HHHHHHHHHHHHc
Q 030568 94 DLLKNAESNAEVK 106 (175)
Q Consensus 94 k~L~sa~aNA~~k 106 (175)
+.|+.|+.+++.+
T Consensus 113 ~Al~~Al~~y~~k 125 (157)
T 2z7e_A 113 ETLHVAIKDYLMK 125 (157)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 8999999888654
No 21
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=26.24 E-value=53 Score=24.01 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=23.9
Q ss_pred HhCCCHHHHHHHHHHHhhcc-------cccceeeecCCCcchh
Q 030568 36 LRKLSLTKAKRYLEDVMAHK-------QAIPFTRFCRGVGRTA 71 (175)
Q Consensus 36 IrG~~v~~A~~~L~~V~~kk-------~~vp~~ry~~g~~~~~ 71 (175)
+.||+++||+..|...++.- .-++...---|.|.++
T Consensus 58 LHGl~v~EA~~~L~~fL~~a~~~~~~~~g~~~v~IIhGkG~hS 100 (135)
T 2vkc_A 58 LHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHS 100 (135)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECCSCSSS
T ss_pred eCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECCCcCC
Confidence 35999999999998776542 3344444445555554
No 22
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=26.01 E-value=75 Score=23.40 Aligned_cols=37 Identities=8% Similarity=0.108 Sum_probs=30.0
Q ss_pred EEEeeCCCccCHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 030568 15 CKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDV 51 (175)
Q Consensus 15 ~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V 51 (175)
++-.+...-+|--=+-.++.+|+|++++||..+....
T Consensus 57 ~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~~ 93 (138)
T 2qq4_A 57 IRFQGQGCAISTASASLMTEAVKGKKVAEALELSRKF 93 (138)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHTTSBHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4555666777777788899999999999999988753
No 23
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=25.65 E-value=75 Score=23.68 Aligned_cols=37 Identities=11% Similarity=0.139 Sum_probs=31.0
Q ss_pred eEEEeeCCCccCHHHHHHHHHHHhCCCHHHHHHHHHH
Q 030568 14 SCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLED 50 (175)
Q Consensus 14 ~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~ 50 (175)
.++-.+...-+|--=+-.++.+|+|++++||..+...
T Consensus 58 d~~f~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~~ 94 (147)
T 1xjs_A 58 DAKFEGEGCSISMASASMMTQAIKGKDIETALSMSKI 94 (147)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4566677777888888899999999999999998764
No 24
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=23.93 E-value=94 Score=23.50 Aligned_cols=83 Identities=12% Similarity=0.062 Sum_probs=48.0
Q ss_pred eEEEeeCCCccCHHHHHHHHHHHhCCCHHHHHHHHHHH---hhcccccceeeecCCCcchhhhccCCCCCCCCCchhhhH
Q 030568 14 SCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDV---MAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAK 90 (175)
Q Consensus 14 ~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V---~~kk~~vp~~ry~~g~~~~~~~~~~~~~~~gr~pkKaA~ 90 (175)
.++-.+...-+|.-=+-.++.+|+|++++||..+.... +..+...|...+. ++.-=..... |. .-.|+|-
T Consensus 57 d~~F~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~~f~~ml~~~~~~~~~~L~-~l~~l~gv~~-~p-----~R~~Ca~ 129 (159)
T 1su0_B 57 DIAFAGNGCTISTASSSMMTDAVIGKSKEEALALADIFSEMVQGQENPAQKELG-EAELLAGVAK-FP-----QRIKCST 129 (159)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCGGGGGGG-GGGGGGGGGG-CH-----HHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCCCCchhhhc-hhhhhcCccc-Cc-----chhHHHH
Confidence 35556677777777888999999999999999987752 1122111110010 0000000000 10 1357888
Q ss_pred HHHHHHHHHHHHH
Q 030568 91 FILDLLKNAESNA 103 (175)
Q Consensus 91 ~ilk~L~sa~aNA 103 (175)
.-.+.|+.|+.+.
T Consensus 130 La~~Al~~Al~~~ 142 (159)
T 1su0_B 130 LAWNALKEAIKRS 142 (159)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhh
Confidence 8889999988664
No 25
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=23.74 E-value=44 Score=22.52 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=15.3
Q ss_pred HhCCCHHHHHHHHHHHhh
Q 030568 36 LRKLSLTKAKRYLEDVMA 53 (175)
Q Consensus 36 IrG~~v~~A~~~L~~V~~ 53 (175)
++||+++||...|..-++
T Consensus 9 LhG~~~~eA~~~l~~fl~ 26 (83)
T 2zqe_A 9 LRGLTVAEALLEVDQALE 26 (83)
T ss_dssp CTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 469999999999998654
No 26
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=22.55 E-value=62 Score=21.23 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCCCCCCeEE
Q 030568 94 DLLKNAESNAEVKGLDVDALYI 115 (175)
Q Consensus 94 k~L~sa~aNA~~kglD~d~L~I 115 (175)
+..++|++|-...||+||.-++
T Consensus 12 ~avq~Aian~RLEGLEpd~~~l 33 (61)
T 3shg_B 12 RDARNALASQRLEGLEPDPQVV 33 (61)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHH
T ss_pred HHHHHHHHhhhhccCCCCHHHH
Confidence 6788899998889999987554
No 27
>3ouv_A Serine/threonine protein kinase; protein-ligand interaction, transferase; 2.00A {Mycobacterium tuberculosis H37RA}
Probab=20.62 E-value=43 Score=21.23 Aligned_cols=15 Identities=7% Similarity=0.138 Sum_probs=13.5
Q ss_pred HhCCCHHHHHHHHHH
Q 030568 36 LRKLSLTKAKRYLED 50 (175)
Q Consensus 36 IrG~~v~~A~~~L~~ 50 (175)
+.||++++|...|+.
T Consensus 13 v~G~~~~~A~~~L~~ 27 (71)
T 3ouv_A 13 VAGQTVDVAQKNMNV 27 (71)
T ss_dssp CTTCBHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 469999999999996
Done!