Query 030570
Match_columns 175
No_of_seqs 86 out of 88
Neff 3.4
Searched_HMMs 29240
Date Tue Mar 26 01:44:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030570.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030570hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dsc_A ADP-sugar pyrophosphata 93.1 0.4 1.4E-05 37.2 7.9 53 120-172 30-90 (212)
2 3o6z_A GDP-mannose pyrophospha 93.1 0.74 2.5E-05 35.2 9.3 51 119-171 16-70 (191)
3 1g0s_A Hypothetical 23.7 kDa p 92.7 0.22 7.5E-06 38.9 5.9 52 119-172 27-83 (209)
4 3q91_A Uridine diphosphate glu 88.0 0.22 7.6E-06 40.1 2.1 39 131-171 23-61 (218)
5 1vhz_A ADP compounds hydrolase 85.6 1.9 6.4E-05 33.3 6.2 49 119-171 22-72 (198)
6 1mk1_A ADPR pyrophosphatase; n 80.3 3.4 0.00011 31.8 5.7 38 131-171 30-67 (207)
7 2yvp_A NDX2, MUTT/nudix family 46.5 62 0.0021 23.5 6.5 42 126-170 23-64 (182)
8 1uv7_A General secretion pathw 32.6 64 0.0022 23.6 4.6 50 58-127 48-97 (110)
9 3nrp_A Periplasmic protein-pro 30.9 53 0.0018 26.3 4.1 41 98-138 14-67 (160)
10 4emh_A Probable U6 snRNA-assoc 29.9 89 0.0031 22.7 5.0 23 131-153 62-86 (105)
11 1th7_A SnRNP-2, small nuclear 26.4 1.3E+02 0.0046 20.1 5.1 19 135-153 60-78 (81)
12 3s6n_F Small nuclear ribonucle 25.1 28 0.00095 24.3 1.4 20 136-155 58-77 (86)
13 4emk_C U6 snRNA-associated SM- 25.1 35 0.0012 25.2 2.0 22 134-155 80-101 (113)
14 2o6f_A 34 kDa membrane antigen 25.0 68 0.0023 26.4 3.9 41 98-138 43-98 (189)
15 2ds4_A Tripartite motif protei 24.8 1.7E+02 0.0057 19.9 6.0 43 102-145 28-74 (113)
16 1uw4_A UPF3X; nonsense mediate 24.4 31 0.0011 24.7 1.6 16 63-78 8-23 (91)
17 1d3b_B Protein (small nuclear 24.4 48 0.0016 22.8 2.5 19 137-155 67-85 (91)
18 4dn9_A Antibiotic biosynthesis 23.8 1.4E+02 0.0049 21.3 5.1 24 68-91 76-99 (122)
19 3bw1_A SMX4 protein, U6 snRNA- 23.6 28 0.00094 24.7 1.2 18 137-154 70-87 (96)
20 4emg_A Probable U6 snRNA-assoc 23.0 35 0.0012 24.2 1.6 16 135-150 73-88 (93)
21 1ljo_A Archaeal SM-like protei 22.9 39 0.0013 22.6 1.7 17 137-153 59-75 (77)
22 2l08_A Regulator of nonsense t 22.6 31 0.0011 25.4 1.2 16 63-78 16-31 (97)
23 1x7v_A PA3566 protein, APC5058 22.5 62 0.0021 21.2 2.7 24 68-91 62-85 (99)
24 1t6a_A Rbstp2229 gene product; 22.3 55 0.0019 25.5 2.7 37 58-97 80-117 (126)
25 3kkf_A Putative antibiotic bio 21.1 1.2E+02 0.0043 20.4 4.1 25 68-92 62-86 (105)
26 1b34_B Protein (small nuclear 20.5 50 0.0017 24.2 2.1 17 137-153 96-112 (118)
27 1m5q_A SMAP3, small nuclear ri 20.4 67 0.0023 24.3 2.8 22 132-154 45-66 (130)
28 1h64_1 SnRNP SM-like protein; 20.1 48 0.0016 22.0 1.7 18 136-153 56-73 (75)
29 2fb0_A Conserved hypothetical 20.1 66 0.0022 20.9 2.4 24 68-91 60-83 (94)
No 1
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*
Probab=93.13 E-value=0.4 Score=37.25 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=35.0
Q ss_pred EEEEEEEEeecCCCceeccEEEee-------cCeeEEEEEEecC-CCeEEEEEeeecccCC
Q 030570 120 FLKFKADIFCKETGQKVPGIVFAR-------GPAVAVLILLDSE-GETYAILTEQVVFLYL 172 (175)
Q Consensus 120 FvKl~ADv~~~~~G~klPG~VFLR-------G~SVamLviL~~~-~EkyvVLT~QpRIpaG 172 (175)
|+++..+-...++|..-.=.+.-| +++|+|+.++... ++..++|+.|.|.|.+
T Consensus 30 ~~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~av~v~~v~~~~~~~~~vlLv~q~R~~~~ 90 (212)
T 2dsc_A 30 WVKLEKTTYMDPTGKTRTWESVKRTTRKEQTADGVAVIPVLQRTLHYECIVLVKQFRPPMG 90 (212)
T ss_dssp SEEEEEEEEECTTSCEEEEEEEEETTCCTTSCSEEEEEEEEECTTSCCEEEEEEEEEGGGT
T ss_pred EEEEEEEEEECCCCCEEEEEEEEeeccCCCCCCEEEEEEEEeCCCCCcEEEEEEeecCCCC
Confidence 445544433336776544344455 7899999988764 3568999999997654
No 2
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Probab=93.09 E-value=0.74 Score=35.20 Aligned_cols=51 Identities=14% Similarity=0.272 Sum_probs=36.6
Q ss_pred eEEEEEEEEee--cCCCce--eccEEEeecCeeEEEEEEecCCCeEEEEEeeecccC
Q 030570 119 GFLKFKADIFC--KETGQK--VPGIVFARGPAVAVLILLDSEGETYAILTEQVVFLY 171 (175)
Q Consensus 119 GFvKl~ADv~~--~~~G~k--lPG~VFLRG~SVamLviL~~~~EkyvVLT~QpRIpa 171 (175)
||+++..+... .++|.+ ..-.++-|+++|+|+++.. ++..++|+.|.|.|.
T Consensus 16 ~~~~~~~~~~~~~~~~g~~~~~~r~~~~~~~av~v~~~~~--~~~~vlLv~~~r~~~ 70 (191)
T 3o6z_A 16 NYFTLHNITYDLTRKDGEVIRHKREVYDRGNGATILLYNT--KKKTVVLIRQFRVAT 70 (191)
T ss_dssp SSSEEEEEEEEEECTTSCEEEEEEEEEECCCEEEEEEEET--TTTEEEEEEEECHHH
T ss_pred CcEEEEEEEEEEECCCCCEEEEEEEEEecCCEEEEEEEEC--CCCEEEEEEcCCccc
Confidence 67777766542 268875 4456889999999887753 335788999999764
No 3
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Probab=92.68 E-value=0.22 Score=38.93 Aligned_cols=52 Identities=25% Similarity=0.311 Sum_probs=35.6
Q ss_pred eEEEEEEEEee--cCCC---ceeccEEEeecCeeEEEEEEecCCCeEEEEEeeecccCC
Q 030570 119 GFLKFKADIFC--KETG---QKVPGIVFARGPAVAVLILLDSEGETYAILTEQVVFLYL 172 (175)
Q Consensus 119 GFvKl~ADv~~--~~~G---~klPG~VFLRG~SVamLviL~~~~EkyvVLT~QpRIpaG 172 (175)
||+++..+-.. .++| +...-.++-++++|+|+++-. ++..++|+.|.|.|.+
T Consensus 27 g~~~v~~~~~~~~~~~g~~~~~~~r~~~~~~~av~vl~~~~--~~~~vLLvrq~R~~~~ 83 (209)
T 1g0s_A 27 GFFSLDLYRFRHRLFNGQMSHEVRREIFERGHAAVLLPFDP--VRDEVVLIEQIRIAAY 83 (209)
T ss_dssp SSSEEEEEEEEEBCTTSCBCCCEEEEEEECCCEEEEEEEET--TTTEEEEEEEECGGGG
T ss_pred eeEEEEEEEEEEEcCCCCcceEEEEEEEeCCCEEEEEEEEC--CCCEEEEEEeecccCC
Confidence 46666665331 2466 466667888999999987753 2346899999998753
No 4
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}
Probab=87.96 E-value=0.22 Score=40.07 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=21.7
Q ss_pred CCCceeccEEEeecCeeEEEEEEecCCCeEEEEEeeecccC
Q 030570 131 ETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVVFLY 171 (175)
Q Consensus 131 ~~G~klPG~VFLRG~SVamLviL~~~~EkyvVLT~QpRIpa 171 (175)
++|+...=-++-|+++|+||++-. ++..+||+.|.|.|+
T Consensus 23 ~~G~~~~~e~v~~~~aV~vl~~~~--~~~~vlLvrQ~R~~~ 61 (218)
T 3q91_A 23 MNGAQKSWDFMKTHDSVTVLLFNS--SRRSLVLVKQFRPAV 61 (218)
T ss_dssp ------------CCCEEEEEEEEG--GGTEEEEEEEECHHH
T ss_pred CCCCEEEEEEEEcCCeEEEEEEEC--CCCEEEEEEcccccc
Confidence 688888888999999999987753 235799999999774
No 5
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=85.62 E-value=1.9 Score=33.30 Aligned_cols=49 Identities=10% Similarity=0.030 Sum_probs=30.6
Q ss_pred eEEEEEEEEeecCCCceeccEEEe--ecCeeEEEEEEecCCCeEEEEEeeecccC
Q 030570 119 GFLKFKADIFCKETGQKVPGIVFA--RGPAVAVLILLDSEGETYAILTEQVVFLY 171 (175)
Q Consensus 119 GFvKl~ADv~~~~~G~klPG~VFL--RG~SVamLviL~~~~EkyvVLT~QpRIpa 171 (175)
+|+++..+-...++|...+=.+.. ++++|+|+++- ++ .++|+.|.|-+.
T Consensus 22 ~~~~v~~~~~~~~~G~~~~~~~~~~~~~~av~vl~~~--~~--~vLLvrq~r~~~ 72 (198)
T 1vhz_A 22 RLFTVESVDLEFSNGVRRVYERMRPTNREAVMIVPIV--DD--HLILIREYAVGT 72 (198)
T ss_dssp SSCEEEEEEEECTTSCEEEEEEECCCCCCEEEEEEEE--TT--EEEEEEEEETTT
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEEeCCCCEEEEEEEE--CC--EEEEEEcccCCC
Confidence 455555544333788776533433 67788877654 23 788999988653
No 6
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Probab=80.26 E-value=3.4 Score=31.80 Aligned_cols=38 Identities=21% Similarity=0.101 Sum_probs=25.0
Q ss_pred CCCceeccEEEeecCeeEEEEEEecCCCeEEEEEeeecccC
Q 030570 131 ETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVVFLY 171 (175)
Q Consensus 131 ~~G~klPG~VFLRG~SVamLviL~~~~EkyvVLT~QpRIpa 171 (175)
++|....=.++-+.++|+|+++- .+..++|+.|.|-|.
T Consensus 30 p~G~~~~~~~~~~~~av~v~i~~---~~~~vLLvrr~r~~~ 67 (207)
T 1mk1_A 30 PGGGIVTREVVEHFGAVAIVAMD---DNGNIPMVYQYRHTY 67 (207)
T ss_dssp ----CEEEEEEEECCEEEEEECC---TTSEEEEEEEEETTT
T ss_pred CCCCEEEEEEEeCCCEEEEEEEc---CCCEEEEEEeecCCC
Confidence 67877776778888888887763 234578899998764
No 7
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=46.52 E-value=62 Score=23.53 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=22.5
Q ss_pred EEeecCCCceeccEEEeecCeeEEEEEEecCCCeEEEEEeeeccc
Q 030570 126 DIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVVFL 170 (175)
Q Consensus 126 Dv~~~~~G~klPG~VFLRG~SVamLviL~~~~EkyvVLT~QpRIp 170 (175)
++.. ++|..+...-+++-+..+..+++..+| .++|+.|.|-+
T Consensus 23 ~~~~-~~g~~~~~~~~~~~~~~v~v~i~~~~~--~vLL~~r~~~~ 64 (182)
T 2yvp_A 23 RVRT-HTGRELTYVYRPGPVAASFVLPVTERG--TALLVRQYRHP 64 (182)
T ss_dssp EEEC-TTSCEEEEEEBCSSCEEEEEEEBCTTS--EEEEEEEEEGG
T ss_pred EEEC-CCCCEeeEEEEEecCCEEEEEEEcCCC--EEEEEEeccCC
Confidence 3444 678774555555555433333333333 37888888744
No 8
>1uv7_A General secretion pathway protein M; transport; HET: MSE; 1.7A {Vibrio cholerae} SCOP: d.67.4.1
Probab=32.58 E-value=64 Score=23.59 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=31.5
Q ss_pred CCeEEEeCCCCChhhhhhhccChhHHHHHHHHhhhcccccCCCeeEeEEEEeeeeeecceeeEEEEEEEE
Q 030570 58 QPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADI 127 (175)
Q Consensus 58 ~~V~V~~~pgls~e~l~~a~~~~~Fk~Wl~~L~~sl~~~~~~~y~Lr~I~IQsVD~FG~RvGFvKl~ADv 127 (175)
..|.|.+.+ ..|..+-.||+.|+.. .+..+.+++|.. +..-|.|+++.--
T Consensus 48 ~~vqV~l~~----------v~F~~L~~WL~~L~~~------~Gv~v~~l~l~~----~~~~G~V~v~rL~ 97 (110)
T 1uv7_A 48 EMMQVWIQP----------LPFSQLVSWIAYLQER------QGVSVDAIDIDR----GKVNGVVEVKRLQ 97 (110)
T ss_dssp SEEEEEECC----------BCHHHHHHHHHHHHHH------SCCEEEEEEEEE----C----CEEEEEEE
T ss_pred CEEEEEECC----------CCHHHHHHHHHHHHHh------cCceEEEEEEee----cCCCCEEEEEEEE
Confidence 468887754 2388899999999864 256666666544 4567888777443
No 9
>3nrp_A Periplasmic protein-probably involved in high-AFF transport; immunoglobulin-like fold, iron transporter, copper binding; 1.60A {Escherichia coli} PDB: 3nrq_A
Probab=30.89 E-value=53 Score=26.34 Aligned_cols=41 Identities=29% Similarity=0.402 Sum_probs=31.9
Q ss_pred CCCeeEeEEEEeeeeeeccee------eEEEEEEEEeecCC-------Cceecc
Q 030570 98 NGDMLLKQVLIQGVDMFGKRI------GFLKFKADIFCKET-------GQKVPG 138 (175)
Q Consensus 98 ~~~y~Lr~I~IQsVD~FG~Rv------GFvKl~ADv~~~~~-------G~klPG 138 (175)
.+++++-.|-.|.|||.=... -=+-|+|||.+.++ |+++|.
T Consensus 14 ~~~~~i~aVY~qpv~mep~g~~~~a~~sdiHLEAdI~a~e~n~~Gf~~G~~vPy 67 (160)
T 3nrp_A 14 MNEMELAAVYLQPIDMEPRGMGLPAAKADVHLEADIHAVEGNKNGFGAGEWIPY 67 (160)
T ss_dssp ETTEEEEEEEESCCCEESCCSSCCGGGCSEEEEEEEEECTTCSSSCCTTCBCCS
T ss_pred cCCeEEEEEEecCeeecCccCCCCcccCCeEEEEEeeccccCcCcCcCCCCCCC
Confidence 468999999999999994322 23689999987554 899993
No 10
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=29.86 E-value=89 Score=22.75 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=15.8
Q ss_pred CCCc--eeccEEEeecCeeEEEEEE
Q 030570 131 ETGQ--KVPGIVFARGPAVAVLILL 153 (175)
Q Consensus 131 ~~G~--klPG~VFLRG~SVamLviL 153 (175)
.+|+ .-=|.||+||..|..+.+-
T Consensus 62 ~dg~~~~~lg~v~IRG~nI~~I~~p 86 (105)
T 4emh_A 62 PDGDKFFRLPECYIRGNNIKYLRIQ 86 (105)
T ss_dssp TTSCEEEEEEEEEECGGGEEEEEC-
T ss_pred cCCceeeEcCeEEEeCCeEEEEecC
Confidence 4564 2238999999998776554
No 11
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=26.37 E-value=1.3e+02 Score=20.12 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=14.9
Q ss_pred eeccEEEeecCeeEEEEEE
Q 030570 135 KVPGIVFARGPAVAVLILL 153 (175)
Q Consensus 135 klPG~VFLRG~SVamLviL 153 (175)
.--|.+|+||..|..+..+
T Consensus 60 ~~lg~v~iRG~~I~~i~~~ 78 (81)
T 1th7_A 60 KKLGTIVIRGDNVILISPL 78 (81)
T ss_dssp EEEEEEEECGGGEEEEEEC
T ss_pred eECCEEEECCCEEEEEEec
Confidence 4458999999999776554
No 12
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=25.13 E-value=28 Score=24.29 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=15.9
Q ss_pred eccEEEeecCeeEEEEEEec
Q 030570 136 VPGIVFARGPAVAVLILLDS 155 (175)
Q Consensus 136 lPG~VFLRG~SVamLviL~~ 155 (175)
--|.+|+||..|..+...+.
T Consensus 58 ~lg~v~IRG~nI~~i~~~d~ 77 (86)
T 3s6n_F 58 HLGEVLIRCNNVLYIRGVEE 77 (86)
T ss_dssp EESSEEECGGGEEEEEECC-
T ss_pred EccEEEEeCCeEEEEEeCCc
Confidence 34899999999988877654
No 13
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=25.11 E-value=35 Score=25.22 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=17.2
Q ss_pred ceeccEEEeecCeeEEEEEEec
Q 030570 134 QKVPGIVFARGPAVAVLILLDS 155 (175)
Q Consensus 134 ~klPG~VFLRG~SVamLviL~~ 155 (175)
.+--|.||+||..|.++-.++.
T Consensus 80 ~r~lG~v~IRG~nIv~I~~~d~ 101 (113)
T 4emk_C 80 IRKLGLVVVRGTTLVLIAPMDG 101 (113)
T ss_dssp EEEEEEEEECTTTEEEEEECC-
T ss_pred eeEccEEEECCCeEEEEEecCc
Confidence 4556999999999988777654
No 14
>2o6f_A 34 kDa membrane antigen; IG-fold, syphilis, metal-ION binding, dimer, membrane protei protein binding; 1.63A {Treponema pallidum} PDB: 2o6d_A 2o6e_A 2o6c_A
Probab=25.04 E-value=68 Score=26.38 Aligned_cols=41 Identities=29% Similarity=0.320 Sum_probs=32.9
Q ss_pred CCCeeEeEEEEeeeeeecc-eee------EEEEEEEEeecC--------CCceecc
Q 030570 98 NGDMLLKQVLIQGVDMFGK-RIG------FLKFKADIFCKE--------TGQKVPG 138 (175)
Q Consensus 98 ~~~y~Lr~I~IQsVD~FG~-RvG------FvKl~ADv~~~~--------~G~klPG 138 (175)
.++|.+--|-.|-|||+-. ... =|-|+|||...+ +|++||-
T Consensus 43 ~g~~~VaaVY~QPv~mep~~g~~~~a~~sDiHLEADIha~~~~n~~Gf~~G~wvPy 98 (189)
T 2o6f_A 43 VGPLHVGGVYFQPVEMHPAPGAQPSKEEADCHIEADIHANEAGKDLGYGVGDFVPY 98 (189)
T ss_dssp ETTEEEEEEEESCCCEESCCTTCCCTTTCSEEEEEEEEECGGGGGGTCCTTSBCCS
T ss_pred cCCEEEEEEEeeceeecccccCcCCcccCceEEEEEcchhhcCCccccccCCCcCc
Confidence 5689999999999999974 332 267999998655 8999993
No 15
>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.81 E-value=1.7e+02 Score=19.91 Aligned_cols=43 Identities=12% Similarity=0.042 Sum_probs=30.3
Q ss_pred eEeEEEEeeeeeeccee--eEEEEEEEEeecCCC--ceeccEEEeecC
Q 030570 102 LLKQVLIQGVDMFGKRI--GFLKFKADIFCKETG--QKVPGIVFARGP 145 (175)
Q Consensus 102 ~Lr~I~IQsVD~FG~Rv--GFvKl~ADv~~~~~G--~klPG~VFLRG~ 145 (175)
.-..+.|+..|..|+++ |=-.|++.+.. ++| ..+++.|.=+|.
T Consensus 28 ~~~~F~V~~~d~~G~~~~~Gg~~~~v~i~~-p~~~~~~~~~~v~D~~d 74 (113)
T 2ds4_A 28 QTASFTLLCKDAAGEIMGRGGDNVQVAVVP-KDKKDSPVRTMVQDNKD 74 (113)
T ss_dssp CCEEEEEECBBTTSSBCCCCCCCEEEEEEE-SSCSSCCCEEEEECCSS
T ss_pred CcEEEEEEEECCCCCCcccCCceEEEEEEe-cCCCCceeEEEEEECCC
Confidence 45688999999999754 43457788876 554 677776665554
No 16
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=24.41 E-value=31 Score=24.69 Aligned_cols=16 Identities=13% Similarity=0.306 Sum_probs=13.9
Q ss_pred EeCCCCChhhhhhhcc
Q 030570 63 VAAPGLSESDFRCAVE 78 (175)
Q Consensus 63 ~~~pgls~e~l~~a~~ 78 (175)
.|||+|+||+|+..++
T Consensus 8 rLPP~LteeeF~~~l~ 23 (91)
T 1uw4_A 8 RLPPTLTKEQLQEHLQ 23 (91)
T ss_dssp EECTTCCHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHhc
Confidence 5899999999998655
No 17
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=24.38 E-value=48 Score=22.80 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=15.3
Q ss_pred ccEEEeecCeeEEEEEEec
Q 030570 137 PGIVFARGPAVAVLILLDS 155 (175)
Q Consensus 137 PG~VFLRG~SVamLviL~~ 155 (175)
=|.||+||.+|..+.+..+
T Consensus 67 lg~v~iRG~~I~~i~~~~~ 85 (91)
T 1d3b_B 67 LGLVLLRGENLVSMTVEGP 85 (91)
T ss_dssp EEEEEECGGGEEEEEEEEC
T ss_pred CCEEEECCCeEEEEEcCCC
Confidence 4899999999987766653
No 18
>4dn9_A Antibiotic biosynthesis monooxygenase; structural genomics,protein structure initiative, NEW YORK S genomix research consortium, nysgrc; 2.05A {Chloroflexus aurantiacus}
Probab=23.79 E-value=1.4e+02 Score=21.29 Aligned_cols=24 Identities=4% Similarity=-0.032 Sum_probs=21.4
Q ss_pred CChhhhhhhccChhHHHHHHHHhh
Q 030570 68 LSESDFRCAVESTLFKQWLKNLQS 91 (175)
Q Consensus 68 ls~e~l~~a~~~~~Fk~Wl~~L~~ 91 (175)
-+++.++.-++++.|+.|...+..
T Consensus 76 ~d~ea~~aH~~s~~f~~~~~~~~~ 99 (122)
T 4dn9_A 76 DSPESHKASLSLPSVQDAIACGRP 99 (122)
T ss_dssp SCHHHHHHGGGSHHHHHHHHHHGG
T ss_pred CCHHHHHHHHcCHHHHHHHHHHHH
Confidence 578889888999999999999975
No 19
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=23.63 E-value=28 Score=24.72 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=14.2
Q ss_pred ccEEEeecCeeEEEEEEe
Q 030570 137 PGIVFARGPAVAVLILLD 154 (175)
Q Consensus 137 PG~VFLRG~SVamLviL~ 154 (175)
=|.+|+||.+|.++-...
T Consensus 70 lG~v~IRG~nVv~I~~~d 87 (96)
T 3bw1_A 70 CEMVFIRGDTVTLISTPS 87 (96)
T ss_dssp EEEEEECGGGEEEEECCC
T ss_pred cCEEEECCCEEEEEEecC
Confidence 489999999997766543
No 20
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=23.00 E-value=35 Score=24.15 Aligned_cols=16 Identities=31% Similarity=0.575 Sum_probs=12.9
Q ss_pred eeccEEEeecCeeEEE
Q 030570 135 KVPGIVFARGPAVAVL 150 (175)
Q Consensus 135 klPG~VFLRG~SVamL 150 (175)
+-=|.+|+||.+|.++
T Consensus 73 r~lG~v~iRG~nVv~I 88 (93)
T 4emg_A 73 KHYEMLFVRGDSVILI 88 (93)
T ss_dssp EEEEEEEECGGGEEEE
T ss_pred eEeceEEECCCeEEEE
Confidence 4459999999998654
No 21
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=22.88 E-value=39 Score=22.64 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=13.7
Q ss_pred ccEEEeecCeeEEEEEE
Q 030570 137 PGIVFARGPAVAVLILL 153 (175)
Q Consensus 137 PG~VFLRG~SVamLviL 153 (175)
=|.+|+||.+|..+...
T Consensus 59 lg~v~iRG~nI~~i~~~ 75 (77)
T 1ljo_A 59 LGEIVLRGNNVVLIQPQ 75 (77)
T ss_dssp EEEEEECGGGEEEEEEC
T ss_pred CCeEEEeCCeEEEEEeC
Confidence 38999999999776554
No 22
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=22.56 E-value=31 Score=25.35 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=13.6
Q ss_pred EeCCCCChhhhhhhcc
Q 030570 63 VAAPGLSESDFRCAVE 78 (175)
Q Consensus 63 ~~~pgls~e~l~~a~~ 78 (175)
.|||+|+||+|...++
T Consensus 16 rLPP~Ltee~F~~~l~ 31 (97)
T 2l08_A 16 RLPPGLTKEQLEEQLR 31 (97)
T ss_dssp CCCSCSCHHHHTTTTS
T ss_pred CCCCCCCHHHHHHHhC
Confidence 4899999999997654
No 23
>1x7v_A PA3566 protein, APC5058; structural genomics, protein structure initiative, midwest center for structural genomics, alpha-beta plait, PSI; 1.78A {Pseudomonas aeruginosa} SCOP: d.58.4.11
Probab=22.47 E-value=62 Score=21.21 Aligned_cols=24 Identities=4% Similarity=0.153 Sum_probs=20.1
Q ss_pred CChhhhhhhccChhHHHHHHHHhh
Q 030570 68 LSESDFRCAVESTLFKQWLKNLQS 91 (175)
Q Consensus 68 ls~e~l~~a~~~~~Fk~Wl~~L~~ 91 (175)
-+++.+..-+++++|+.|.+.+..
T Consensus 62 ~~~~a~~~h~~s~~~~~~~~~~~~ 85 (99)
T 1x7v_A 62 RDDAALERHQNTEHFLRFSRGNEA 85 (99)
T ss_dssp SSHHHHHHHHTSHHHHHHHTTCGG
T ss_pred CCHHHHHHHhcCHHHHHHHHHHHH
Confidence 477888888889999999998864
No 24
>1t6a_A Rbstp2229 gene product; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: MSE; 2.05A {Geobacillus stearothermophilus} SCOP: d.129.8.1
Probab=22.31 E-value=55 Score=25.50 Aligned_cols=37 Identities=22% Similarity=0.461 Sum_probs=30.1
Q ss_pred CCeEEEeCCCCChhhhhhhccChhHHHHHHH-Hhhhccccc
Q 030570 58 QPVHVVAAPGLSESDFRCAVESTLFKQWLKN-LQSETGILA 97 (175)
Q Consensus 58 ~~V~V~~~pgls~e~l~~a~~~~~Fk~Wl~~-L~~sl~~~~ 97 (175)
.-|.|++|++-+-.|--+ +-.|..|+.+ |+.+|.++.
T Consensus 80 ~fIQi~LP~~AThGDKgK---ANEfckfLAK~l~geL~LFN 117 (126)
T 1t6a_A 80 TFIDIALPPGATHGDKGK---ANEFSKWLAKTLGGELHLFS 117 (126)
T ss_dssp EEEEEECCTTCCHHHHHH---HHHHHHHHHHHHCEEEECTT
T ss_pred ceEEEECCCCCCcCcchh---HHHHHHHHHHHhhhheeeec
Confidence 348999999999999998 6888999865 888776654
No 25
>3kkf_A Putative antibiotic biosynthesis monooxygenase; structural genomics, joint center for structural genomics, JCSG; HET: MSE P6G; 1.30A {Bacteroides thetaiotaomicron}
Probab=21.07 E-value=1.2e+02 Score=20.43 Aligned_cols=25 Identities=12% Similarity=0.328 Sum_probs=21.1
Q ss_pred CChhhhhhhccChhHHHHHHHHhhh
Q 030570 68 LSESDFRCAVESTLFKQWLKNLQSE 92 (175)
Q Consensus 68 ls~e~l~~a~~~~~Fk~Wl~~L~~s 92 (175)
-+++.+..-+++++|+.|...+..-
T Consensus 62 ~d~~a~~~H~~s~~~~~~~~~~~~~ 86 (105)
T 3kkf_A 62 ADEAAYKSHIATPHFKKYKEGTLDM 86 (105)
T ss_dssp SSHHHHHHHHTSHHHHHHHHHHGGG
T ss_pred CCHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4777888778899999999999863
No 26
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=20.52 E-value=50 Score=24.18 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=13.5
Q ss_pred ccEEEeecCeeEEEEEE
Q 030570 137 PGIVFARGPAVAVLILL 153 (175)
Q Consensus 137 PG~VFLRG~SVamLviL 153 (175)
=|.+|+||.+|.++...
T Consensus 96 lg~v~IRG~nVv~I~~~ 112 (118)
T 1b34_B 96 ISKMFLRGDSVIVVLRN 112 (118)
T ss_dssp EEEEEECGGGEEEEEEC
T ss_pred cCeEEEcCCEEEEEEeC
Confidence 58999999999766543
No 27
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=20.43 E-value=67 Score=24.32 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=17.5
Q ss_pred CCceeccEEEeecCeeEEEEEEe
Q 030570 132 TGQKVPGIVFARGPAVAVLILLD 154 (175)
Q Consensus 132 ~G~klPG~VFLRG~SVamLviL~ 154 (175)
.|.++ |-||+||..|..+....
T Consensus 45 ~~~~l-g~v~IRG~nI~~I~~~d 66 (130)
T 1m5q_A 45 AGEKF-NRVFIMYRYIVHIDSTE 66 (130)
T ss_dssp TCCEE-EEEEECGGGEEEEEECC
T ss_pred cCCEe-ceEEEeCCeEEEEEcCC
Confidence 56777 89999999997776654
No 28
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=20.10 E-value=48 Score=21.99 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=14.0
Q ss_pred eccEEEeecCeeEEEEEE
Q 030570 136 VPGIVFARGPAVAVLILL 153 (175)
Q Consensus 136 lPG~VFLRG~SVamLviL 153 (175)
-=|.+|+||..|..+...
T Consensus 56 ~lg~v~iRG~~I~~i~~~ 73 (75)
T 1h64_1 56 RYGKIVIRGDNVLAISPT 73 (75)
T ss_dssp EEEEEEECGGGEEEEEEC
T ss_pred ECCEEEECCCEEEEEEeC
Confidence 348999999999776543
No 29
>2fb0_A Conserved hypothetical protein; SAD, bacteroides thetaiotaom structural genomics, PSI, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron}
Probab=20.07 E-value=66 Score=20.94 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=20.7
Q ss_pred CChhhhhhhccChhHHHHHHHHhh
Q 030570 68 LSESDFRCAVESTLFKQWLKNLQS 91 (175)
Q Consensus 68 ls~e~l~~a~~~~~Fk~Wl~~L~~ 91 (175)
-+++.+..-+++++|+.|...+..
T Consensus 60 ~~~~a~~~h~~s~~~~~~~~~~~~ 83 (94)
T 2fb0_A 60 QNAEVLAAHEKTAHFAQYVGIIQE 83 (94)
T ss_dssp SSHHHHHHHTTSHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCHHHHHHHHHHHH
Confidence 477888888889999999999875
Done!