BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030572
MTAVSNSLVLPKNPRVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFK
VHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKF
IYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLRTEDDDAPNGVAVNSGEVEANI

High Scoring Gene Products

Symbol, full name Information P value
AT1G42960 protein from Arabidopsis thaliana 1.1e-32
AT5G16660 protein from Arabidopsis thaliana 3.5e-11
AT3G02900 protein from Arabidopsis thaliana 6.1e-07

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030572
        (175 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2009859 - symbol:AT1G42960 "AT1G42960" species...   357  1.1e-32   1
TAIR|locus:2174185 - symbol:AT5G16660 "AT5G16660" species...   154  3.5e-11   1
TAIR|locus:2075462 - symbol:AT3G02900 "AT3G02900" species...   114  6.1e-07   1


>TAIR|locus:2009859 [details] [associations]
            symbol:AT1G42960 "AT1G42960" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009706 "chloroplast inner membrane"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009536 "plastid"
            evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0019344
            "cysteine biosynthetic process" evidence=RCA] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0009706 GO:GO:0009535
            EMBL:AC068324 EMBL:AF370328 EMBL:AY063118 IPI:IPI00517801
            PIR:B96497 RefSeq:NP_564482.1 UniGene:At.20488 STRING:Q9C7S3
            PaxDb:Q9C7S3 PRIDE:Q9C7S3 EnsemblPlants:AT1G42960.1 GeneID:840894
            KEGG:ath:AT1G42960 TAIR:At1g42960 eggNOG:NOG14671
            HOGENOM:HOG000005891 InParanoid:Q9C7S3 OMA:LHISAPR PhylomeDB:Q9C7S3
            ProtClustDB:CLSN2722005 ArrayExpress:Q9C7S3 Genevestigator:Q9C7S3
            Uniprot:Q9C7S3
        Length = 168

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 86/171 (50%), Positives = 109/171 (63%)

Query:     5 SNSLVLPKNP-RVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSR-RRPFKVH 62
             S SL LPKN  ++  SSG  L P   C+      ++SF  NH  K+ +S+ R +R   + 
Sbjct:     6 STSLSLPKNSHQLHPSSGFSLNPNARCV------SVSFGLNHSNKLHISAPRTKRILTIQ 59

Query:    63 ASNSEGGRANSAXXXXXXXXXXXXXXXXXXCVYAPQISKALAGAAADRKDLMRKLPKFIY 122
             ++  +   + S                   CVYAPQISKA+AGA  DRKDLMRKLPKFIY
Sbjct:    60 SAYRDDDGSGSTGLFVGGFILGGLIVGALGCVYAPQISKAIAGA--DRKDLMRKLPKFIY 117

Query:   123 DEEKALEKTRKILTEKIAQLNSAIDDVSAQLRTEDDDAPNGVAVNSGEVEA 173
             DEEKALEKTRK+L EKIAQLNSAIDDVS+QL++ED   PNG A+++ E+EA
Sbjct:   118 DEEKALEKTRKVLAEKIAQLNSAIDDVSSQLKSED--TPNGAALSTDEIEA 166


>TAIR|locus:2174185 [details] [associations]
            symbol:AT5G16660 "AT5G16660" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0016020 "membrane" evidence=IDA] [GO:0009536 "plastid"
            evidence=IDA] EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009941
            GO:GO:0009535 EMBL:BT001205 EMBL:AK175334 EMBL:AK175338
            EMBL:AK175400 EMBL:AK175600 IPI:IPI00547193 RefSeq:NP_197169.2
            UniGene:At.9926 PRIDE:Q8H0X5 EnsemblPlants:AT5G16660.1
            GeneID:831528 KEGG:ath:AT5G16660 TAIR:At5g16660 InParanoid:Q8H0X5
            OMA:NEEDEYG PhylomeDB:Q8H0X5 ProtClustDB:CLSN2685228
            ArrayExpress:Q8H0X5 Genevestigator:Q8H0X5 Uniprot:Q8H0X5
        Length = 168

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 48/145 (33%), Positives = 69/145 (47%)

Query:    32 GSNTPANLS-FSPNHQWKVQLSSSRRRPFKVHASNSEGGRANSAXXXXXXXXXXXXXXXX 90
             G +T   LS         +   S+R R F V A   +G R+ S+                
Sbjct:    25 GLSTTTKLSSICKTSDLTIHKKSNRTRKFSVSAGYRDGSRSGSSGDFIAGFLLGGAVFGA 84

Query:    91 XXCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVS 150
                ++APQI +++     +      K P + YDE   LEKTR+ L EKI QLNSAID+VS
Sbjct:    85 VAYIFAPQIRRSVLNEEDEYGFEKPKQPTY-YDE--GLEKTRETLNEKIGQLNSAIDNVS 141

Query:   151 AQLRTEDDDAPN-GVAVNSG-EVEA 173
             ++LR  + +  +  V V +  EVEA
Sbjct:   142 SRLRGREKNTSSLNVPVETDPEVEA 166


>TAIR|locus:2075462 [details] [associations]
            symbol:AT3G02900 "AT3G02900" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009941 "chloroplast
            envelope" evidence=IDA] [GO:0009536 "plastid" evidence=IDA]
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009941 EMBL:AC018363
            ProtClustDB:CLSN2685228 HOGENOM:HOG000005891 EMBL:BT002424
            EMBL:BT006544 IPI:IPI00540607 RefSeq:NP_186940.1 UniGene:At.41061
            STRING:Q9M8T2 PaxDb:Q9M8T2 PRIDE:Q9M8T2 EnsemblPlants:AT3G02900.1
            GeneID:821188 KEGG:ath:AT3G02900 TAIR:At3g02900 eggNOG:NOG326145
            InParanoid:Q9M8T2 OMA:RELWSTK PhylomeDB:Q9M8T2 ArrayExpress:Q9M8T2
            Genevestigator:Q9M8T2 Uniprot:Q9M8T2
        Length = 162

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 32/106 (30%), Positives = 48/106 (45%)

Query:    49 VQLSSSRRRPFKVHASNSEGGRANSAXXXXXXXXXXXXXXXXXXCVYAPQISKALAGAAA 108
             VQ  S+R     V A    G +   +                   ++APQI +++   + 
Sbjct:    34 VQTKSNRSHKLSVSAGYRGGSKGGGSSDFVTGFLLGSAVFGTLAYIFAPQIRRSVL--SE 91

Query:   109 DRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLR 154
             +     +      YDE   LE+ R+IL EKI QLNSAID VS++L+
Sbjct:    92 NEYGFKKPEQPMYYDE--GLEERREILNEKIGQLNSAIDKVSSRLK 135


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.126   0.350    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      175       157   0.00079  106 3  11 23  0.42    32
                                                     30  0.42    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  569 (61 KB)
  Total size of DFA:  128 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.03u 0.11s 15.14t   Elapsed:  00:00:01
  Total cpu time:  15.03u 0.11s 15.14t   Elapsed:  00:00:01
  Start:  Sat May 11 06:05:14 2013   End:  Sat May 11 06:05:15 2013

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