BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030572
         (175 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GU5|A Chain A, Structure Of Full-Length Drosophila Cryptochrome
 pdb|4GU5|B Chain B, Structure Of Full-Length Drosophila Cryptochrome
          Length = 539

 Score = 28.5 bits (62), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 102 ALAGAAADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLRTEDD 158
           AL  A AD+   +  +P FI+D E A   T+ +   ++  L  ++ D+  QL+   D
Sbjct: 22  ALLAALADKDQGIALIPVFIFDGESA--GTKNVGYNRMRFLLDSLQDIDDQLQAATD 76


>pdb|3ICJ|A Chain A, Crystal Structure Of An Uncharacterized Metal-Dependent
           Hydrolase From Pyrococcus Furiosus
          Length = 534

 Score = 27.3 bits (59), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 6/34 (17%)

Query: 112 DLMRKLPKFIYDE------EKALEKTRKILTEKI 139
           DL+   P   +DE      E+ALE++RKI+ EKI
Sbjct: 181 DLLNLKPSKDFDESTGIVRERALEESRKIINEKI 214


>pdb|3NRA|A Chain A, Crystal Structure Of An Aspartate Aminotransferase
           (Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15
           A Resolution
 pdb|3NRA|B Chain B, Crystal Structure Of An Aspartate Aminotransferase
           (Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15
           A Resolution
          Length = 407

 Score = 27.3 bits (59), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 2   TAVSNSLVLPKNPRVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSR 55
           T  + S + P+ P++ ++   F+K L L  G        FSP+    V+L+ S+
Sbjct: 333 TPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ 386


>pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With
           N-Terminal Kh Domains From Methanothermobacter
           Thermautotrophicus
 pdb|2YCB|B Chain B, Structure Of The Archaeal Beta-Casp Protein With
           N-Terminal Kh Domains From Methanothermobacter
           Thermautotrophicus
          Length = 636

 Score = 26.9 bits (58), Expect = 5.3,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 26/47 (55%)

Query: 110 RKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLRTE 156
           ++ ++R     + D EKA+ K  +I+ E+    N + DDV+ ++  E
Sbjct: 59  KRIIIRSDRSVLMDPEKAIRKIHEIVPEEAKITNISFDDVTCEVIIE 105


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.126    0.350 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,167,646
Number of Sequences: 62578
Number of extensions: 130611
Number of successful extensions: 283
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 6
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (23.1 bits)