Query 030572
Match_columns 175
No_of_seqs 101 out of 110
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 15:46:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030572.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030572hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4980 GvpP Gas vesicle prote 99.1 1.5E-10 3.2E-15 90.6 7.5 73 73-148 3-83 (115)
2 PF12732 YtxH: YtxH-like prote 99.1 3.5E-10 7.6E-15 79.9 7.2 59 77-141 1-59 (74)
3 PF12732 YtxH: YtxH-like prote 95.3 0.05 1.1E-06 38.4 5.2 35 73-107 1-35 (74)
4 TIGR03789 pdsO proteobacterial 93.6 0.13 2.9E-06 44.5 5.2 32 72-103 46-77 (239)
5 PF06295 DUF1043: Protein of u 92.7 0.65 1.4E-05 36.3 7.2 23 78-100 3-25 (128)
6 COG4980 GvpP Gas vesicle prote 92.0 0.45 9.8E-06 37.6 5.6 24 80-103 6-29 (115)
7 PRK09430 djlA Dna-J like membr 90.2 0.21 4.6E-06 43.2 2.5 26 76-101 9-34 (267)
8 PF06295 DUF1043: Protein of u 89.9 0.68 1.5E-05 36.2 4.8 25 81-105 2-26 (128)
9 PRK11677 hypothetical protein; 89.7 2.2 4.7E-05 34.4 7.6 23 77-99 6-28 (134)
10 PF06103 DUF948: Bacterial pro 82.3 9.7 0.00021 27.3 7.2 24 113-136 38-61 (90)
11 PF06305 DUF1049: Protein of u 80.4 4.3 9.3E-05 27.4 4.5 28 76-103 23-50 (68)
12 TIGR03789 pdsO proteobacterial 80.3 3.4 7.3E-05 35.9 4.9 22 135-156 106-127 (239)
13 PRK11677 hypothetical protein; 80.0 7.8 0.00017 31.2 6.5 27 79-105 4-30 (134)
14 PF06120 Phage_HK97_TLTM: Tail 79.6 4.1 9E-05 36.7 5.3 13 136-148 94-106 (301)
15 PF12072 DUF3552: Domain of un 78.8 7.7 0.00017 32.1 6.4 26 78-103 3-28 (201)
16 PF10779 XhlA: Haemolysin XhlA 76.1 2.6 5.7E-05 29.7 2.5 19 77-95 52-70 (71)
17 PF10247 Romo1: Reactive mitoc 72.3 2.6 5.5E-05 30.6 1.7 17 79-95 9-25 (67)
18 PRK10510 putative outer membra 72.3 7.7 0.00017 32.8 4.8 21 75-95 61-81 (219)
19 COG1647 Esterase/lipase [Gener 71.4 7.7 0.00017 34.4 4.7 85 72-156 83-180 (243)
20 TIGR01386 cztS_silS_copS heavy 71.4 34 0.00073 29.2 8.5 78 77-154 166-253 (457)
21 PF10112 Halogen_Hydrol: 5-bro 70.3 16 0.00035 29.7 6.2 13 136-148 81-93 (199)
22 PF05433 Rick_17kDa_Anti: Glyc 69.8 4.7 0.0001 26.5 2.4 22 80-101 2-23 (42)
23 PRK01844 hypothetical protein; 69.1 25 0.00054 26.0 6.3 57 80-146 9-67 (72)
24 PRK10983 putative inner membra 68.0 11 0.00024 34.0 5.1 34 74-107 308-341 (368)
25 PRK00523 hypothetical protein; 67.7 26 0.00057 25.9 6.2 56 81-146 11-68 (72)
26 PF13488 Gly-zipper_Omp: Glyci 67.7 3.9 8.6E-05 27.3 1.7 20 78-97 21-40 (46)
27 PF06103 DUF948: Bacterial pro 67.0 29 0.00063 24.8 6.3 29 128-156 42-70 (90)
28 PF07889 DUF1664: Protein of u 65.8 15 0.00033 29.3 5.0 22 127-148 58-79 (126)
29 PF07047 OPA3: Optic atrophy 3 65.6 26 0.00055 27.6 6.2 25 128-152 110-134 (134)
30 KOG4096 Uncharacterized conser 64.2 4.2 9E-05 30.3 1.4 20 77-96 11-30 (75)
31 PF12729 4HB_MCP_1: Four helix 63.9 40 0.00087 24.4 6.6 25 126-150 75-99 (181)
32 PF04286 DUF445: Protein of un 63.8 5.4 0.00012 33.8 2.2 17 78-94 347-363 (367)
33 COG3105 Uncharacterized protei 63.6 20 0.00043 29.5 5.3 17 81-97 11-27 (138)
34 PF06897 DUF1269: Protein of u 60.8 8.9 0.00019 29.2 2.8 35 79-119 20-54 (102)
35 PF15176 LRR19-TM: Leucine-ric 59.4 11 0.00024 29.5 3.1 27 70-96 12-38 (102)
36 PF13436 Gly-zipper_OmpA: Glyc 58.7 8.3 0.00018 29.8 2.3 23 75-97 50-72 (118)
37 PF03672 UPF0154: Uncharacteri 58.2 41 0.00089 24.3 5.6 56 81-146 3-60 (64)
38 TIGR03319 YmdA_YtgF conserved 58.2 30 0.00066 33.0 6.4 15 83-97 6-20 (514)
39 PF04286 DUF445: Protein of un 58.0 6.3 0.00014 33.4 1.6 14 82-95 347-360 (367)
40 PF12072 DUF3552: Domain of un 56.9 50 0.0011 27.3 6.8 23 77-99 6-28 (201)
41 PF12664 DUF3789: Protein of u 56.8 8.8 0.00019 24.7 1.8 26 76-103 4-29 (34)
42 PF01594 UPF0118: Domain of un 55.1 8.8 0.00019 32.3 2.1 27 75-101 291-317 (327)
43 PRK09966 putative inner membra 54.0 1E+02 0.0022 26.7 8.4 31 76-106 161-191 (407)
44 PRK13454 F0F1 ATP synthase sub 52.5 1.1E+02 0.0024 24.9 8.0 29 77-105 30-62 (181)
45 PRK10935 nitrate/nitrite senso 52.0 94 0.002 27.8 8.1 78 77-154 154-241 (565)
46 PRK09174 F0F1 ATP synthase sub 51.6 85 0.0018 26.4 7.4 20 86-105 65-84 (204)
47 PRK07352 F0F1 ATP synthase sub 50.9 1.1E+02 0.0025 24.3 7.8 29 75-103 20-48 (174)
48 PF05659 RPW8: Arabidopsis bro 50.5 63 0.0014 26.0 6.2 20 76-95 4-23 (147)
49 PF11240 DUF3042: Protein of u 50.4 14 0.00031 25.9 2.1 22 73-96 4-25 (54)
50 PRK12482 flagellar motor prote 50.1 32 0.0007 30.7 4.9 22 86-107 37-58 (287)
51 PF06160 EzrA: Septation ring 48.8 73 0.0016 30.4 7.3 62 77-139 1-73 (560)
52 PF04799 Fzo_mitofusin: fzo-li 48.5 14 0.00031 31.1 2.3 22 127-148 117-138 (171)
53 COG1850 RbcL Ribulose 1,5-bisp 48.2 15 0.00033 35.0 2.6 66 90-155 157-222 (429)
54 PRK11280 hypothetical protein; 47.7 18 0.00038 30.5 2.7 17 80-96 67-83 (170)
55 smart00502 BBC B-Box C-termina 47.7 70 0.0015 22.7 5.6 33 124-156 73-105 (127)
56 PF11368 DUF3169: Protein of u 47.5 16 0.00034 30.9 2.4 21 75-95 13-33 (248)
57 PF12805 FUSC-like: FUSC-like 47.0 74 0.0016 27.2 6.4 30 127-156 130-159 (284)
58 PF13436 Gly-zipper_OmpA: Glyc 47.0 21 0.00044 27.7 2.8 22 76-97 76-97 (118)
59 PF10247 Romo1: Reactive mitoc 46.9 15 0.00032 26.7 1.8 26 76-101 10-35 (67)
60 PF00430 ATP-synt_B: ATP synth 46.8 1.1E+02 0.0023 22.5 6.6 21 85-105 10-30 (132)
61 PRK12704 phosphodiesterase; Pr 46.3 73 0.0016 30.5 6.9 14 83-96 12-25 (520)
62 PRK09430 djlA Dna-J like membr 45.4 12 0.00027 32.4 1.5 24 73-96 10-33 (267)
63 PF04568 IATP: Mitochondrial A 44.6 63 0.0014 24.9 5.1 28 126-153 72-99 (100)
64 PF02466 Tim17: Tim17/Tim22/Ti 44.2 19 0.00041 26.8 2.2 19 67-85 82-100 (128)
65 PF06667 PspB: Phage shock pro 43.9 96 0.0021 22.8 5.8 20 127-147 47-66 (75)
66 PRK05759 F0F1 ATP synthase sub 43.8 1.5E+02 0.0032 22.8 7.4 31 75-105 5-35 (156)
67 PF11368 DUF3169: Protein of u 43.5 21 0.00045 30.2 2.5 24 75-98 9-32 (248)
68 PF04930 FUN14: FUN14 family; 43.4 11 0.00024 27.9 0.8 14 71-84 85-98 (100)
69 COG4575 ElaB Uncharacterized c 43.4 21 0.00045 28.1 2.3 21 78-98 84-104 (104)
70 PF06897 DUF1269: Protein of u 42.9 32 0.00069 26.2 3.3 23 75-97 7-34 (102)
71 COG5002 VicK Signal transducti 42.8 1.2E+02 0.0026 29.2 7.5 31 75-105 30-60 (459)
72 KOG4096 Uncharacterized conser 42.1 14 0.00029 27.7 1.1 27 75-101 13-39 (75)
73 PRK06569 F0F1 ATP synthase sub 41.9 1.4E+02 0.003 24.6 7.0 33 73-105 9-41 (155)
74 TIGR00980 3a0801so1tim17 mitoc 41.9 84 0.0018 26.3 5.8 35 72-107 16-50 (170)
75 PF05957 DUF883: Bacterial pro 41.7 72 0.0016 23.1 4.9 24 125-148 26-49 (94)
76 PF11981 DUF3482: Domain of un 40.8 20 0.00043 32.0 2.1 22 133-154 245-266 (292)
77 COG4395 Uncharacterized protei 40.7 20 0.00043 32.4 2.1 13 72-84 31-43 (281)
78 PRK10132 hypothetical protein; 40.6 27 0.00058 27.1 2.6 21 78-98 87-107 (108)
79 PRK10540 lipoprotein; Provisio 40.2 16 0.00034 26.6 1.2 13 84-96 55-67 (72)
80 PRK09109 motC flagellar motor 39.9 75 0.0016 27.4 5.4 22 86-107 39-60 (246)
81 TIGR02872 spore_ytvI sporulati 39.9 22 0.00047 30.0 2.1 27 75-101 304-330 (341)
82 PF11382 DUF3186: Protein of u 39.9 1.1E+02 0.0025 27.1 6.7 66 77-153 10-76 (308)
83 PRK13731 conjugal transfer sur 39.7 25 0.00054 31.2 2.5 16 126-141 222-237 (243)
84 PF03302 VSP: Giardia variant- 39.7 12 0.00025 34.4 0.5 26 70-95 361-388 (397)
85 PF01034 Syndecan: Syndecan do 39.5 9.8 0.00021 27.6 0.0 18 77-94 10-27 (64)
86 PRK10404 hypothetical protein; 39.3 30 0.00064 26.4 2.6 20 79-98 82-101 (101)
87 PRK10381 LPS O-antigen length 39.1 20 0.00044 32.7 1.9 20 75-96 338-357 (377)
88 PF03945 Endotoxin_N: delta en 39.1 97 0.0021 25.0 5.7 31 125-155 56-86 (226)
89 PTZ00382 Variant-specific surf 38.8 8.5 0.00018 29.0 -0.4 27 71-97 61-89 (96)
90 PRK10697 DNA-binding transcrip 38.6 45 0.00098 26.4 3.6 19 77-95 40-58 (118)
91 PRK14472 F0F1 ATP synthase sub 38.4 1.9E+02 0.0042 23.1 7.3 21 85-105 29-49 (175)
92 PF08183 SpoV: Stage V sporula 38.4 27 0.00058 21.4 1.8 13 82-94 11-23 (26)
93 PF03035 RNA_capsid: Calicivir 38.1 91 0.002 27.6 5.7 23 75-98 3-25 (226)
94 COG5336 Uncharacterized protei 37.7 23 0.00051 28.3 1.8 18 74-91 49-66 (116)
95 COG2747 FlgM Negative regulato 37.0 25 0.00053 26.9 1.8 15 134-148 58-72 (93)
96 PF06072 Herpes_US9: Alphaherp 37.0 38 0.00082 24.4 2.6 27 72-98 33-59 (60)
97 PF12841 YvrJ: YvrJ protein fa 36.6 48 0.001 21.6 2.9 18 134-151 19-36 (38)
98 TIGR03785 marine_sort_HK prote 36.1 2.5E+02 0.0054 27.4 8.8 29 78-106 409-437 (703)
99 PRK08456 flagellar motor prote 35.9 96 0.0021 26.8 5.5 20 86-105 39-58 (257)
100 PRK11638 lipopolysaccharide bi 35.9 22 0.00048 32.2 1.6 20 75-96 316-335 (342)
101 CHL00008 petG cytochrome b6/f 35.7 35 0.00075 22.5 2.1 21 77-97 5-25 (37)
102 COG3133 SlyB Outer membrane li 35.6 7.9 0.00017 32.2 -1.1 40 56-97 49-88 (154)
103 PF06682 DUF1183: Protein of u 35.0 29 0.00063 31.6 2.3 26 71-100 248-273 (318)
104 KOG3335 Predicted coiled-coil 35.0 19 0.00042 30.7 1.1 18 74-91 69-86 (181)
105 COG3134 Predicted outer membra 34.7 19 0.00042 30.4 1.0 29 77-105 70-98 (179)
106 COG3763 Uncharacterized protei 34.7 1.3E+02 0.0029 22.2 5.3 60 78-147 7-68 (71)
107 PF14362 DUF4407: Domain of un 34.6 2.2E+02 0.0049 24.4 7.5 29 126-154 138-166 (301)
108 PF10337 DUF2422: Protein of u 34.4 2.4E+02 0.0052 25.9 8.1 31 72-102 189-219 (459)
109 PRK13453 F0F1 ATP synthase sub 34.1 1.9E+02 0.0042 23.2 6.7 29 77-105 21-49 (173)
110 PRK13461 F0F1 ATP synthase sub 33.8 2.3E+02 0.005 22.1 7.4 31 75-105 6-36 (159)
111 PRK00888 ftsB cell division pr 33.5 2.1E+02 0.0046 21.7 6.8 31 126-156 44-78 (105)
112 PF04391 DUF533: Protein of un 33.3 19 0.00042 30.3 0.8 22 78-99 3-24 (188)
113 PRK14011 prefoldin subunit alp 33.2 76 0.0016 25.7 4.2 27 127-153 99-125 (144)
114 PRK10478 putative PTS system f 33.2 29 0.00064 32.0 2.0 28 65-92 78-113 (359)
115 CHL00114 psbX photosystem II p 32.8 21 0.00046 23.7 0.8 27 75-101 6-35 (39)
116 PF04399 Glutaredoxin2_C: Glut 32.4 64 0.0014 25.7 3.6 78 87-171 10-90 (132)
117 PRK00665 petG cytochrome b6-f 32.2 43 0.00094 22.0 2.1 21 77-97 5-25 (37)
118 PRK04325 hypothetical protein; 32.1 1.1E+02 0.0023 22.0 4.4 21 128-148 14-34 (74)
119 PF05128 DUF697: Domain of unk 31.9 79 0.0017 25.0 4.0 32 76-107 104-135 (162)
120 PF05818 TraT: Enterobacterial 31.8 16 0.00035 31.7 0.1 13 128-140 196-208 (215)
121 PRK13452 atpC F0F1 ATP synthas 31.8 95 0.0021 24.8 4.5 43 125-169 96-144 (145)
122 PF08566 Pam17: Mitochondrial 31.7 62 0.0014 27.4 3.6 25 83-107 82-106 (173)
123 PF12597 DUF3767: Protein of u 31.5 2.5E+02 0.0055 21.9 6.7 31 72-103 39-69 (118)
124 PF12999 PRKCSH-like: Glucosid 31.0 1E+02 0.0022 26.0 4.7 25 128-152 151-175 (176)
125 PF05440 MtrB: Tetrahydrometha 30.6 44 0.00096 25.9 2.3 23 72-94 74-96 (97)
126 COG4395 Uncharacterized protei 30.4 41 0.00088 30.4 2.4 11 71-81 26-36 (281)
127 PF12273 RCR: Chitin synthesis 30.1 38 0.00083 26.0 1.9 28 75-102 2-29 (130)
128 PF04375 HemX: HemX; InterPro 30.0 1.9E+02 0.004 26.3 6.5 27 130-156 93-119 (372)
129 PRK00295 hypothetical protein; 30.0 1.3E+02 0.0027 21.3 4.4 8 149-156 45-52 (68)
130 PRK12509 putative monovalent c 29.9 44 0.00094 26.8 2.3 17 71-87 30-46 (137)
131 PF03229 Alpha_GJ: Alphavirus 29.9 23 0.00051 28.7 0.7 21 74-94 81-101 (126)
132 TIGR03818 MotA1 flagellar moto 29.8 1.5E+02 0.0034 26.2 5.9 22 86-107 37-58 (282)
133 PRK08387 putative monovalent c 29.6 44 0.00095 26.6 2.2 17 71-87 29-45 (131)
134 PRK10337 sensor protein QseC; 29.6 2.9E+02 0.0062 23.9 7.4 30 76-105 162-191 (449)
135 PRK13460 F0F1 ATP synthase sub 29.4 2.9E+02 0.0064 22.0 7.3 31 75-105 17-47 (173)
136 cd00890 Prefoldin Prefoldin is 29.0 1.2E+02 0.0026 22.2 4.4 27 128-154 99-125 (129)
137 KOG3300 NADH:ubiquinone oxidor 29.0 2E+02 0.0043 23.9 5.9 66 70-138 30-97 (146)
138 PF04971 Lysis_S: Lysis protei 28.9 44 0.00095 24.5 1.9 15 82-96 38-52 (68)
139 PF09813 Coiled-coil_56: Coile 28.5 47 0.001 26.0 2.1 20 77-96 52-71 (100)
140 PF04102 SlyX: SlyX; InterPro 28.2 1.5E+02 0.0032 20.8 4.5 22 135-156 30-51 (69)
141 PRK02119 hypothetical protein; 28.2 1.2E+02 0.0026 21.8 4.1 12 135-146 21-32 (73)
142 PRK15361 pathogenicity island 28.1 92 0.002 27.0 4.0 22 74-95 94-117 (195)
143 PRK04778 septation ring format 28.1 2.7E+02 0.0059 26.6 7.6 61 76-137 4-75 (569)
144 PF02529 PetG: Cytochrome B6-F 28.0 67 0.0015 21.1 2.5 21 77-97 5-25 (37)
145 PRK12508 putative monovalent c 27.9 49 0.0011 26.5 2.2 17 71-87 31-47 (139)
146 PRK12574 putative monovalent c 27.8 48 0.001 26.6 2.2 17 71-87 32-48 (141)
147 PF02212 GED: Dynamin GTPase e 27.8 1.1E+02 0.0024 22.1 3.9 27 123-149 63-89 (92)
148 PRK12573 putative monovalent c 27.7 50 0.0011 26.5 2.3 17 71-87 32-48 (140)
149 PRK11107 hybrid sensory histid 27.6 3E+02 0.0065 26.4 7.7 28 79-106 182-209 (919)
150 PRK02793 phi X174 lysis protei 27.6 1.2E+02 0.0027 21.6 4.1 8 149-156 48-55 (72)
151 COG3765 WzzB Chain length dete 27.6 41 0.00088 31.3 1.9 16 81-96 320-335 (347)
152 COG3879 Uncharacterized protei 27.3 1.8E+02 0.0038 26.0 5.8 27 124-150 58-84 (247)
153 TIGR00943 2a6301s02 monovalent 27.1 53 0.0011 25.3 2.2 17 71-87 7-23 (107)
154 PRK04406 hypothetical protein; 27.1 1.3E+02 0.0027 21.9 4.1 13 135-147 23-35 (75)
155 COG0628 yhhT Predicted permeas 26.9 47 0.001 29.0 2.2 30 76-105 306-335 (355)
156 PF12297 EVC2_like: Ellis van 26.9 65 0.0014 30.8 3.2 64 36-100 26-92 (429)
157 PRK12704 phosphodiesterase; Pr 26.5 2.4E+02 0.0052 27.1 6.9 17 79-95 12-28 (520)
158 PF06698 DUF1192: Protein of u 26.3 97 0.0021 21.9 3.3 19 135-153 26-44 (59)
159 PRK12505 putative monovalent c 26.2 54 0.0012 27.1 2.2 17 71-87 43-59 (159)
160 KOG4608 Uncharacterized conser 26.1 49 0.0011 29.8 2.1 27 76-103 187-213 (270)
161 PRK14471 F0F1 ATP synthase sub 26.1 3.2E+02 0.007 21.4 8.0 31 75-105 9-39 (164)
162 KOG1519 Predicted mitochondria 26.0 50 0.0011 29.5 2.1 22 76-97 210-231 (297)
163 PRK06743 flagellar motor prote 25.9 2.2E+02 0.0048 25.0 6.1 22 86-107 36-57 (254)
164 PRK08386 putative monovalent c 25.9 55 0.0012 26.5 2.2 17 71-87 31-47 (151)
165 PRK09609 hypothetical protein; 25.6 47 0.001 30.4 1.9 23 72-94 41-65 (312)
166 CHL00019 atpF ATP synthase CF0 25.6 3.5E+02 0.0077 21.8 6.9 29 75-103 25-53 (184)
167 COG0711 AtpF F0F1-type ATP syn 25.6 3.5E+02 0.0076 21.6 7.7 24 82-105 14-37 (161)
168 PRK09467 envZ osmolarity senso 25.6 4.3E+02 0.0094 22.7 8.3 26 81-106 159-184 (435)
169 PF15179 Myc_target_1: Myc tar 25.5 60 0.0013 28.1 2.5 20 76-95 28-47 (197)
170 TIGR02338 gimC_beta prefoldin, 25.4 2.9E+02 0.0063 20.6 6.2 29 127-155 78-106 (110)
171 PRK00965 tetrahydromethanopter 25.2 85 0.0018 24.3 3.0 24 73-96 72-95 (96)
172 PF13441 Gly-zipper_YMGG: YMGG 25.1 72 0.0016 21.5 2.3 17 80-96 6-22 (45)
173 PRK09174 F0F1 ATP synthase sub 25.1 3.9E+02 0.0085 22.4 7.3 36 76-111 50-86 (204)
174 PF02605 PsaL: Photosystem I r 24.9 22 0.00047 29.7 -0.3 23 74-96 124-146 (153)
175 PRK13729 conjugal transfer pil 24.9 81 0.0018 30.5 3.4 27 128-154 95-121 (475)
176 PF08802 CytB6-F_Fe-S: Cytochr 24.8 71 0.0015 21.0 2.2 20 78-97 11-30 (39)
177 TIGR02978 phageshock_pspC phag 24.7 1.1E+02 0.0024 24.1 3.6 72 76-151 34-105 (121)
178 PRK03947 prefoldin subunit alp 24.6 1.5E+02 0.0033 22.7 4.4 27 128-154 106-132 (140)
179 COG3105 Uncharacterized protei 24.5 4.1E+02 0.0088 22.0 7.8 24 78-101 12-35 (138)
180 PF05440 MtrB: Tetrahydrometha 24.4 83 0.0018 24.4 2.8 27 70-96 68-94 (97)
181 PF04632 FUSC: Fusaric acid re 24.2 2.8E+02 0.006 25.9 6.7 27 79-105 133-160 (650)
182 PRK00736 hypothetical protein; 24.1 1.9E+02 0.004 20.5 4.4 8 149-156 45-52 (68)
183 PRK15396 murein lipoprotein; P 24.1 3E+02 0.0066 20.3 6.6 17 135-151 37-53 (78)
184 PRK08124 flagellar motor prote 23.8 2.2E+02 0.0048 24.7 5.7 22 86-107 39-60 (263)
185 TIGR01427 PTS_IIC_fructo PTS s 23.4 76 0.0016 28.8 2.8 40 64-103 83-130 (346)
186 PF03232 COQ7: Ubiquinone bios 23.3 2.3E+02 0.005 23.5 5.4 26 123-148 118-143 (172)
187 PF13807 GNVR: G-rich domain o 23.2 84 0.0018 22.1 2.5 15 76-90 60-74 (82)
188 TIGR01219 Pmev_kin_ERG8 phosph 23.2 1.2E+02 0.0026 28.8 4.2 32 138-171 353-384 (454)
189 PF06961 DUF1294: Protein of u 23.2 88 0.0019 21.6 2.5 19 76-94 26-44 (55)
190 TIGR01010 BexC_CtrB_KpsE polys 23.1 68 0.0015 28.2 2.4 20 77-96 336-355 (362)
191 PF02996 Prefoldin: Prefoldin 23.0 2E+02 0.0044 21.0 4.6 26 128-153 89-114 (120)
192 TIGR03319 YmdA_YtgF conserved 22.9 3E+02 0.0065 26.4 6.8 20 77-96 4-23 (514)
193 PF09849 DUF2076: Uncharacteri 22.9 2.8E+02 0.006 24.5 6.1 38 111-148 33-73 (247)
194 KOG1655 Protein involved in va 22.7 1.9E+02 0.0041 25.5 5.0 38 119-156 15-52 (218)
195 COG4062 MtrB Tetrahydromethano 22.7 62 0.0014 25.6 1.9 26 72-97 75-100 (108)
196 PRK10862 SoxR reducing system 22.6 65 0.0014 25.9 2.0 24 82-105 107-130 (154)
197 PF11833 DUF3353: Protein of u 22.5 56 0.0012 27.5 1.7 21 78-98 147-167 (194)
198 PRK11280 hypothetical protein; 22.5 72 0.0016 26.9 2.4 21 85-105 92-112 (170)
199 PRK10510 putative outer membra 22.5 59 0.0013 27.5 1.9 17 126-142 122-138 (219)
200 COG1730 GIM5 Predicted prefold 22.4 1.7E+02 0.0036 23.9 4.4 27 128-154 106-132 (145)
201 PF01102 Glycophorin_A: Glycop 22.4 91 0.002 24.8 2.8 17 72-88 60-76 (122)
202 PF15290 Syntaphilin: Golgi-lo 22.3 1.5E+02 0.0034 27.2 4.5 21 136-156 123-143 (305)
203 PTZ00236 mitochondrial import 22.3 2.4E+02 0.0052 23.5 5.4 34 73-107 19-52 (164)
204 PRK04758 hypothetical protein; 22.1 1.1E+02 0.0025 25.5 3.4 52 98-153 119-170 (181)
205 PF01864 DUF46: Putative integ 22.1 64 0.0014 27.0 1.9 21 75-95 51-71 (175)
206 PF04632 FUSC: Fusaric acid re 22.0 76 0.0017 29.5 2.6 30 72-101 387-416 (650)
207 COG3879 Uncharacterized protei 22.0 4.5E+02 0.0097 23.5 7.2 28 127-154 54-81 (247)
208 COG4399 Uncharacterized protei 21.9 66 0.0014 30.3 2.2 17 79-95 357-373 (376)
209 PF10883 DUF2681: Protein of u 21.8 3.6E+02 0.0078 20.4 6.4 13 83-95 10-22 (87)
210 PF11833 DUF3353: Protein of u 21.8 79 0.0017 26.6 2.5 23 75-97 148-170 (194)
211 PF11299 DUF3100: Protein of u 21.8 87 0.0019 27.9 2.8 42 56-97 124-168 (241)
212 PF14362 DUF4407: Domain of un 21.7 4.6E+02 0.0099 22.5 7.2 19 132-150 137-155 (301)
213 PF03623 Focal_AT: Focal adhes 21.7 2.8E+02 0.006 22.7 5.5 49 99-150 44-92 (139)
214 PF03035 RNA_capsid: Calicivir 21.6 64 0.0014 28.5 1.9 30 78-107 1-30 (226)
215 TIGR00983 3a0801s02tim23 mitoc 21.4 87 0.0019 25.4 2.6 25 74-98 39-63 (149)
216 TIGR00162 conserved hypothetic 21.4 1.7E+02 0.0038 24.1 4.4 49 92-148 122-170 (188)
217 PRK15086 ethanolamine utilizat 21.4 67 0.0014 30.2 2.1 46 57-102 309-358 (372)
218 PRK03947 prefoldin subunit alp 21.4 1.1E+02 0.0025 23.4 3.1 27 128-154 99-125 (140)
219 PRK10404 hypothetical protein; 21.4 2.6E+02 0.0056 21.3 5.0 25 124-148 32-56 (101)
220 TIGR00161 conserved hypothetic 21.3 1.4E+02 0.003 25.4 3.9 34 118-152 197-230 (238)
221 PF14241 DUF4341: Domain of un 21.2 64 0.0014 22.4 1.5 14 75-88 48-61 (62)
222 COG1655 Uncharacterized protei 21.1 1.9E+02 0.0041 26.2 4.7 70 72-143 181-266 (267)
223 PRK12579 putative monovalent c 21.1 73 0.0016 28.2 2.2 17 71-87 136-152 (258)
224 PRK09835 sensor kinase CusS; P 21.1 4.5E+02 0.0097 22.8 7.0 30 77-106 187-216 (482)
225 PF09304 Cortex-I_coil: Cortex 21.0 2E+02 0.0043 22.8 4.4 29 126-154 47-75 (107)
226 PRK09173 F0F1 ATP synthase sub 21.0 4.1E+02 0.0089 20.7 7.5 18 86-103 13-31 (159)
227 PF07155 ECF-ribofla_trS: ECF- 20.9 67 0.0015 25.0 1.8 22 72-93 38-59 (169)
228 PHA03332 membrane glycoprotein 20.8 2.4E+02 0.0052 30.6 6.0 24 70-93 842-865 (1328)
229 PF04391 DUF533: Protein of un 20.8 54 0.0012 27.6 1.3 11 132-142 101-111 (188)
230 PF01788 PsbJ: PsbJ; InterPro 20.8 1.1E+02 0.0025 20.4 2.6 20 76-95 10-29 (40)
231 cd00584 Prefoldin_alpha Prefol 20.7 2.1E+02 0.0045 21.5 4.4 26 128-153 99-124 (129)
232 PF12848 ABC_tran_2: ABC trans 20.5 2.7E+02 0.0059 19.1 4.7 26 125-150 26-51 (85)
233 TIGR00293 prefoldin, archaeal 20.5 2E+02 0.0043 21.5 4.2 27 128-154 98-124 (126)
234 PF13600 DUF4140: N-terminal d 20.4 2.2E+02 0.0047 20.6 4.3 29 126-154 73-101 (104)
235 KOG2629 Peroxisomal membrane a 20.4 3.1E+02 0.0067 25.3 6.0 22 72-93 82-103 (300)
236 TIGR01666 YCCS hypothetical me 20.3 3.2E+02 0.007 27.4 6.6 74 78-151 503-584 (704)
237 PF04156 IncA: IncA protein; 20.3 4E+02 0.0086 21.1 6.1 18 135-152 128-145 (191)
238 TIGR03752 conj_TIGR03752 integ 20.0 2.5E+02 0.0054 27.3 5.6 28 128-155 114-141 (472)
No 1
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=99.14 E-value=1.5e-10 Score=90.58 Aligned_cols=73 Identities=21% Similarity=0.330 Sum_probs=58.1
Q ss_pred ccchhhhHHHHHHHHHHHhHHhhcccchHHHHhhhhhhHHHHhhCCCcchh--------HHHHHHHHHHhHHHHHHHHHH
Q 030572 73 SAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYD--------EEKALEKTRKILTEKIAQLNS 144 (175)
Q Consensus 73 f~ggFl~G~llGGaVGGvlGlL~APR~~kel~~~l~d~k~~~~~~p~~~~d--------ee~~iE~arr~Le~kIaqLN~ 144 (175)
.++.||.|+++||+||++.++||||++|+++|..+ ++..++++...++ .++.....-+.|.+.-.|+++
T Consensus 3 ~~~~~l~G~liGgiiGa~aaLL~AP~sGkelR~~~---K~~~~~~~~~ae~~~~~~~~~a~~~s~~~a~~~~~~~~~ik~ 79 (115)
T COG4980 3 KGKDFLFGILIGGIIGAAAALLFAPKSGKELRKKL---KKSGDALFELAEDKGTDILMIADKLSKESAETLKDQGGEIKE 79 (115)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHH
Confidence 46899999999999999999999999999999877 6667777766654 445566666677777777777
Q ss_pred HHHH
Q 030572 145 AIDD 148 (175)
Q Consensus 145 AIdd 148 (175)
+|.+
T Consensus 80 ~v~~ 83 (115)
T COG4980 80 SVKK 83 (115)
T ss_pred HHHH
Confidence 6665
No 2
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=99.10 E-value=3.5e-10 Score=79.93 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHHHhHHhhcccchHHHHhhhhhhHHHHhhCCCcchhHHHHHHHHHHhHHHHHHH
Q 030572 77 FVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQ 141 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGlL~APR~~kel~~~l~d~k~~~~~~p~~~~dee~~iE~arr~Le~kIaq 141 (175)
|+.||++|+++|+++|+|+||+.|+++|+-+ .+...++.+...+..+.+++++.+++.+
T Consensus 1 F~~g~l~Ga~~Ga~~glL~aP~sG~e~R~~l------~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 59 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLFAPKSGKETREKL------KDKAEDLKDKAKDLYEEAKEKVKEKAEE 59 (74)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999998854 2222333344444555555555555555
No 3
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=95.30 E-value=0.05 Score=38.36 Aligned_cols=35 Identities=14% Similarity=-0.012 Sum_probs=17.8
Q ss_pred ccchhhhHHHHHHHHHHHhHHhhcccchHHHHhhh
Q 030572 73 SAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAA 107 (175)
Q Consensus 73 f~ggFl~G~llGGaVGGvlGlL~APR~~kel~~~l 107 (175)
|-.||++|+++|.++|-++.===..+..+.+....
T Consensus 1 F~~g~l~Ga~~Ga~~glL~aP~sG~e~R~~l~~~~ 35 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLFAPKSGKETREKLKDKA 35 (74)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 33455566666655555554444444444444433
No 4
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=93.65 E-value=0.13 Score=44.45 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=18.5
Q ss_pred CccchhhhHHHHHHHHHHHhHHhhcccchHHH
Q 030572 72 NSAGFFVGGFVLGGIIVGTLGCVYAPQISKAL 103 (175)
Q Consensus 72 Gf~ggFl~G~llGGaVGGvlGlL~APR~~kel 103 (175)
|++.|.++|.++||.||+++|.++.-=++...
T Consensus 46 g~~~ga~~g~~~gg~~G~~~G~~~G~~~g~~~ 77 (239)
T TIGR03789 46 GLGSGALLGALVGGPVGAIIGGITGGLIGQAV 77 (239)
T ss_pred hHHHHHHHhhhhccHHHHHHHHHHHHHhhhhc
Confidence 55556666666666666666655555555443
No 5
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=92.68 E-value=0.65 Score=36.30 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHhHHhhcccch
Q 030572 78 VGGFVLGGIIVGTLGCVYAPQIS 100 (175)
Q Consensus 78 l~G~llGGaVGGvlGlL~APR~~ 100 (175)
++||++|.+||.+++-++.+...
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~~~~ 25 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSSNQQ 25 (128)
T ss_pred HHHHHHHHHHHHHHHHHhccchh
Confidence 67899999999999888887754
No 6
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=91.99 E-value=0.45 Score=37.63 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhHHhhcccchHHH
Q 030572 80 GFVLGGIIVGTLGCVYAPQISKAL 103 (175)
Q Consensus 80 G~llGGaVGGvlGlL~APR~~kel 103 (175)
.||+|.+|||++|.+.|=-.....
T Consensus 6 ~~l~G~liGgiiGa~aaLL~AP~s 29 (115)
T COG4980 6 DFLFGILIGGIIGAAAALLFAPKS 29 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCcc
Confidence 588888888888888765555443
No 7
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=90.22 E-value=0.21 Score=43.24 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=21.0
Q ss_pred hhhhHHHHHHHHHHHhHHhhcccchH
Q 030572 76 FFVGGFVLGGIIVGTLGCVYAPQISK 101 (175)
Q Consensus 76 gFl~G~llGGaVGGvlGlL~APR~~k 101 (175)
|++.||++||.+|+++|+++.--..+
T Consensus 9 g~~~G~~~~g~~Ga~~G~~~Gh~~d~ 34 (267)
T PRK09430 9 GFAFGFLFGGFFGALLGLLIGHMFDK 34 (267)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhHHhh
Confidence 67788888999999988888776655
No 8
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=89.89 E-value=0.68 Score=36.19 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhHHhhcccchHHHHh
Q 030572 81 FVLGGIIVGTLGCVYAPQISKALAG 105 (175)
Q Consensus 81 ~llGGaVGGvlGlL~APR~~kel~~ 105 (175)
+++|-+||.+||+++..-..+..+.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~~~~ 26 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSNQQK 26 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccchhh
Confidence 5789999999999987777766543
No 9
>PRK11677 hypothetical protein; Provisional
Probab=89.71 E-value=2.2 Score=34.35 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHhHHhhcccc
Q 030572 77 FVGGFVLGGIIVGTLGCVYAPQI 99 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGlL~APR~ 99 (175)
.++||++|.+||.+++-+..+..
T Consensus 6 a~i~livG~iiG~~~~R~~~~~~ 28 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFGNRKL 28 (134)
T ss_pred HHHHHHHHHHHHHHHHhhccchh
Confidence 46889999999999998888775
No 10
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=82.31 E-value=9.7 Score=27.28 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=12.7
Q ss_pred HHhhCCCcchhHHHHHHHHHHhHH
Q 030572 113 LMRKLPKFIYDEEKALEKTRKILT 136 (175)
Q Consensus 113 ~~~~~p~~~~dee~~iE~arr~Le 136 (175)
..+...+...+.++.++.+++-++
T Consensus 38 l~~~~~~i~~e~~~ll~~~n~l~~ 61 (90)
T PF06103_consen 38 LQEQVDPITKEINDLLHNTNELLE 61 (90)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555556666665544
No 11
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=80.45 E-value=4.3 Score=27.37 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=14.6
Q ss_pred hhhhHHHHHHHHHHHhHHhhcccchHHH
Q 030572 76 FFVGGFVLGGIIVGTLGCVYAPQISKAL 103 (175)
Q Consensus 76 gFl~G~llGGaVGGvlGlL~APR~~kel 103 (175)
-+++-|++|.++|.++++.-.=|..++.
T Consensus 23 ~il~~f~~G~llg~l~~~~~~~~~r~~~ 50 (68)
T PF06305_consen 23 LILIAFLLGALLGWLLSLPSRLRLRRRI 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666655555444444444
No 12
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=80.29 E-value=3.4 Score=35.90 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 030572 135 LTEKIAQLNSAIDDVSAQLRTE 156 (175)
Q Consensus 135 Le~kIaqLN~AIddvr~QL~~~ 156 (175)
++....+....++++.++..+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~ 127 (239)
T TIGR03789 106 LEAEYQQAQVHLETLQQDQQQL 127 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566655444443
No 13
>PRK11677 hypothetical protein; Provisional
Probab=79.95 E-value=7.8 Score=31.19 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHhHHhhcccchHHHHh
Q 030572 79 GGFVLGGIIVGTLGCVYAPQISKALAG 105 (175)
Q Consensus 79 ~G~llGGaVGGvlGlL~APR~~kel~~ 105 (175)
.=+++|-+||.++|++++--..+...+
T Consensus 4 ~~a~i~livG~iiG~~~~R~~~~~~~~ 30 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRFGNRKLRQ 30 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhhH
Confidence 346789999999999998877777543
No 14
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=79.58 E-value=4.1 Score=36.72 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 030572 136 TEKIAQLNSAIDD 148 (175)
Q Consensus 136 e~kIaqLN~AIdd 148 (175)
+++|..|+.+|+.
T Consensus 94 ~~~i~~l~~~i~~ 106 (301)
T PF06120_consen 94 QKKIDSLKDQIKN 106 (301)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 15
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=78.80 E-value=7.7 Score=32.09 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHhHHhhcccchHHH
Q 030572 78 VGGFVLGGIIVGTLGCVYAPQISKAL 103 (175)
Q Consensus 78 l~G~llGGaVGGvlGlL~APR~~kel 103 (175)
|.-.++|.+||.++||++.-...+..
T Consensus 3 ii~~i~~~~vG~~~G~~~~~~~~~~~ 28 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVRKKINRKK 28 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777788888766555443
No 16
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=76.09 E-value=2.6 Score=29.70 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHhHHhh
Q 030572 77 FVGGFVLGGIIVGTLGCVY 95 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGlL~ 95 (175)
-+.|+++|++|++++++++
T Consensus 52 W~~r~iiGaiI~~i~~~i~ 70 (71)
T PF10779_consen 52 WIWRTIIGAIITAIIYLII 70 (71)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3567888888888888875
No 17
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=72.34 E-value=2.6 Score=30.59 Aligned_cols=17 Identities=35% Similarity=0.978 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHhHHhh
Q 030572 79 GGFVLGGIIVGTLGCVY 95 (175)
Q Consensus 79 ~G~llGGaVGGvlGlL~ 95 (175)
-|++.|++||+++|+|+
T Consensus 9 mG~~MG~~VG~~~G~l~ 25 (67)
T PF10247_consen 9 MGFMMGGAVGGAFGALF 25 (67)
T ss_pred HHHHHhhHHHhhhhhhh
Confidence 35555555555555554
No 18
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=72.33 E-value=7.7 Score=32.78 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=13.6
Q ss_pred chhhhHHHHHHHHHHHhHHhh
Q 030572 75 GFFVGGFVLGGIIVGTLGCVY 95 (175)
Q Consensus 75 ggFl~G~llGGaVGGvlGlL~ 95 (175)
.+-+.|+.+|+++|+.+|+.+
T Consensus 61 ~~a~~ga~~G~~~G~~~g~~~ 81 (219)
T PRK10510 61 KGALIGAAAGAALGGGVGYYM 81 (219)
T ss_pred chhhhHhHHHhhhhhhhhhhh
Confidence 345556666777777777665
No 19
>COG1647 Esterase/lipase [General function prediction only]
Probab=71.40 E-value=7.7 Score=34.42 Aligned_cols=85 Identities=20% Similarity=0.213 Sum_probs=56.4
Q ss_pred CccchhhhHHHHHHHHHHHhHHhhccc---------chHHHHhhhhhhHHHHhhCC----CcchhHHHHHHHHHHhHHHH
Q 030572 72 NSAGFFVGGFVLGGIIVGTLGCVYAPQ---------ISKALAGAAADRKDLMRKLP----KFIYDEEKALEKTRKILTEK 138 (175)
Q Consensus 72 Gf~ggFl~G~llGGaVGGvlGlL~APR---------~~kel~~~l~d~k~~~~~~p----~~~~dee~~iE~arr~Le~k 138 (175)
|--..-++|+-+||++-..||+=+-|+ -.++-+.+++.-....+..+ +-.++.++.+......+..+
T Consensus 83 gy~eI~v~GlSmGGv~alkla~~~p~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~~~~~~~~~~~ 162 (243)
T COG1647 83 GYDEIAVVGLSMGGVFALKLAYHYPPKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEMKSYKDTPMTT 162 (243)
T ss_pred CCCeEEEEeecchhHHHHHHHhhCCccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHHHHhhcchHHH
Confidence 445566789999999888888755442 33443343321111112222 22344567788888889999
Q ss_pred HHHHHHHHHHHHHhhccc
Q 030572 139 IAQLNSAIDDVSAQLRTE 156 (175)
Q Consensus 139 IaqLN~AIddvr~QL~~~ 156 (175)
++||+..|++|+.++.-.
T Consensus 163 ~~~~~~~i~~~~~~~~~I 180 (243)
T COG1647 163 TAQLKKLIKDARRSLDKI 180 (243)
T ss_pred HHHHHHHHHHHHhhhhhc
Confidence 999999999999999877
No 20
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=71.40 E-value=34 Score=29.18 Aligned_cols=78 Identities=18% Similarity=0.114 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHHHhHHhhcccchHHHHhhhhhhHH-----HHhhCCCcc-hhH----HHHHHHHHHhHHHHHHHHHHHH
Q 030572 77 FVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKD-----LMRKLPKFI-YDE----EKALEKTRKILTEKIAQLNSAI 146 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGlL~APR~~kel~~~l~d~k~-----~~~~~p~~~-~de----e~~iE~arr~Le~kIaqLN~AI 146 (175)
+++.+++..+++.+++++++-++.+-+..+.+--++ +....+... .|| -..++...++|.+.+.++++.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~r~i~~pl~~l~~~~~~ia~gdl~~~~~~~~~~dEi~~l~~~~n~m~~~l~~~~~~~~~~~ 245 (457)
T TIGR01386 166 LILIAVLLVLLTALLGWWITRLGLEPLRRLSAVAARISPESLDQRLDPSRAPAELRELAQSFNAMLGRLEDAFQRLSQFS 245 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccCccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666677778888887777766553310011 111122111 121 1345555666777777777777
Q ss_pred HHHHHhhc
Q 030572 147 DDVSAQLR 154 (175)
Q Consensus 147 ddvr~QL~ 154 (175)
++++.+++
T Consensus 246 ~~~~h~l~ 253 (457)
T TIGR01386 246 ADLAHELR 253 (457)
T ss_pred Hhhhhhhc
Confidence 77766665
No 21
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=70.28 E-value=16 Score=29.67 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 030572 136 TEKIAQLNSAIDD 148 (175)
Q Consensus 136 e~kIaqLN~AIdd 148 (175)
.++|.++++++..
T Consensus 81 ~~~i~~i~~~~~~ 93 (199)
T PF10112_consen 81 KEKIRRIEKAIKR 93 (199)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555544
No 22
>PF05433 Rick_17kDa_Anti: Glycine zipper 2TM domain; InterPro: IPR008816 This domain includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs []. The domain is found in several Rickettsia genus specific 17 kDa surface antigen proteins [].; GO: 0019867 outer membrane
Probab=69.80 E-value=4.7 Score=26.51 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhHHhhcccchH
Q 030572 80 GFVLGGIIVGTLGCVYAPQISK 101 (175)
Q Consensus 80 G~llGGaVGGvlGlL~APR~~k 101 (175)
|.++|+++|+++|..+....++
T Consensus 2 G~~~Ga~~Ga~~G~~ig~~~g~ 23 (42)
T PF05433_consen 2 GALIGAAVGAVAGSQIGGGNGR 23 (42)
T ss_pred chHHHHHHHHHHHHHhcCCCCc
Confidence 5677777777777777443333
No 23
>PRK01844 hypothetical protein; Provisional
Probab=69.14 E-value=25 Score=26.02 Aligned_cols=57 Identities=21% Similarity=0.132 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhHHhhcccchHHHHhhhhhhHHHHhhCCCcchhH--HHHHHHHHHhHHHHHHHHHHHH
Q 030572 80 GFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDE--EKALEKTRKILTEKIAQLNSAI 146 (175)
Q Consensus 80 G~llGGaVGGvlGlL~APR~~kel~~~l~d~k~~~~~~p~~~~de--e~~iE~arr~Le~kIaqLN~AI 146 (175)
=.+++-++|.++|+.+|-+.= ++-.++-|+..|+. .-.+...|+=.|.+|.|.=.++
T Consensus 9 l~I~~li~G~~~Gff~ark~~----------~k~lk~NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 9 VGVVALVAGVALGFFIARKYM----------MNYLQKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345677777788888875432 22234467877763 2345667777888888876666
No 24
>PRK10983 putative inner membrane protein; Provisional
Probab=68.03 E-value=11 Score=34.00 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=25.7
Q ss_pred cchhhhHHHHHHHHHHHhHHhhcccchHHHHhhh
Q 030572 74 AGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAA 107 (175)
Q Consensus 74 ~ggFl~G~llGGaVGGvlGlL~APR~~kel~~~l 107 (175)
.-..+.|++.|+.++|++|.+++|=+---...+.
T Consensus 308 ~~~il~~~~~G~~~fG~~G~~lgp~i~a~~~~l~ 341 (368)
T PRK10983 308 MILILSGVIGGLIAFGMIGLFIGPVVLAVSYRLF 341 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888899999999997664444443
No 25
>PRK00523 hypothetical protein; Provisional
Probab=67.70 E-value=26 Score=25.88 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhHHhhcccchHHHHhhhhhhHHHHhhCCCcchhH--HHHHHHHHHhHHHHHHHHHHHH
Q 030572 81 FVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDE--EKALEKTRKILTEKIAQLNSAI 146 (175)
Q Consensus 81 ~llGGaVGGvlGlL~APR~~kel~~~l~d~k~~~~~~p~~~~de--e~~iE~arr~Le~kIaqLN~AI 146 (175)
.+++-++|.++|+.+|-+.= ++-.++-|+..|+. ...+.+.|+=.|.+|.|.-..+
T Consensus 11 ~i~~li~G~~~Gffiark~~----------~k~l~~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 11 GIPLLIVGGIIGYFVSKKMF----------KKQIRENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34456667777777764322 22234457777763 2345667777888888776655
No 26
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=67.67 E-value=3.9 Score=27.27 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHhHHhhcc
Q 030572 78 VGGFVLGGIIVGTLGCVYAP 97 (175)
Q Consensus 78 l~G~llGGaVGGvlGlL~AP 97 (175)
..|+++|.+||+++|.++..
T Consensus 21 ~~ga~iGa~vGa~~G~~ig~ 40 (46)
T PF13488_consen 21 GKGAAIGAAVGAAVGAAIGN 40 (46)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 34555555666666655443
No 27
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=67.01 E-value=29 Score=24.81 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=16.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhccc
Q 030572 128 LEKTRKILTEKIAQLNSAIDDVSAQLRTE 156 (175)
Q Consensus 128 iE~arr~Le~kIaqLN~AIddvr~QL~~~ 156 (175)
++...+..++.+.+.|+-.+||..+++.+
T Consensus 42 ~~~i~~e~~~ll~~~n~l~~dv~~k~~~v 70 (90)
T PF06103_consen 42 VDPITKEINDLLHNTNELLEDVNEKLEKV 70 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44444555566666666666666665554
No 28
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=65.80 E-value=15 Score=29.29 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=17.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 030572 127 ALEKTRKILTEKIAQLNSAIDD 148 (175)
Q Consensus 127 ~iE~arr~Le~kIaqLN~AIdd 148 (175)
.+..+|+.|..+|+.|-..+|+
T Consensus 58 ~l~~tKkhLsqRId~vd~klDe 79 (126)
T PF07889_consen 58 SLSSTKKHLSQRIDRVDDKLDE 79 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH
Confidence 5778888888888887777776
No 29
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=65.61 E-value=26 Score=27.58 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=18.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHh
Q 030572 128 LEKTRKILTEKIAQLNSAIDDVSAQ 152 (175)
Q Consensus 128 iE~arr~Le~kIaqLN~AIddvr~Q 152 (175)
.+...+.|+++|.+|++.+++..+|
T Consensus 110 ~~~~l~~L~~~i~~L~~~~~~~~~~ 134 (134)
T PF07047_consen 110 LQERLEELEERIEELEEQVEKQQER 134 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556677888888888888775543
No 30
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.16 E-value=4.2 Score=30.34 Aligned_cols=20 Identities=25% Similarity=0.690 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHhHHhhc
Q 030572 77 FVGGFVLGGIIVGTLGCVYA 96 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGlL~A 96 (175)
+=.|++.|++||+..|+||.
T Consensus 11 ikmG~~mG~avG~a~G~lfG 30 (75)
T KOG4096|consen 11 IKMGLMMGGAVGGATGALFG 30 (75)
T ss_pred HHHHHHHHhhhhhhhhhhcc
Confidence 44566666666666666654
No 31
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=63.92 E-value=40 Score=24.45 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=13.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q 030572 126 KALEKTRKILTEKIAQLNSAIDDVS 150 (175)
Q Consensus 126 ~~iE~arr~Le~kIaqLN~AIddvr 150 (175)
...+...+.+++...++++++++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (181)
T PF12729_consen 75 EERQEIEKEIDEARAEIDEALEEYE 99 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555543
No 32
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=63.81 E-value=5.4 Score=33.80 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHhHHh
Q 030572 78 VGGFVLGGIIVGTLGCV 94 (175)
Q Consensus 78 l~G~llGGaVGGvlGlL 94 (175)
+-|++|||+||.++.++
T Consensus 347 inGallG~liG~~~~~i 363 (367)
T PF04286_consen 347 INGALLGGLIGLLQYLI 363 (367)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 44666777766666655
No 33
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.59 E-value=20 Score=29.51 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhHHhhcc
Q 030572 81 FVLGGIIVGTLGCVYAP 97 (175)
Q Consensus 81 ~llGGaVGGvlGlL~AP 97 (175)
+++|=+||-+||+|+|-
T Consensus 11 a~igLvvGi~IG~li~R 27 (138)
T COG3105 11 ALIGLVVGIIIGALIAR 27 (138)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555566666666654
No 34
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=60.78 E-value=8.9 Score=29.21 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHhHHhhcccchHHHHhhhhhhHHHHhhCCC
Q 030572 79 GGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPK 119 (175)
Q Consensus 79 ~G~llGGaVGGvlGlL~APR~~kel~~~l~d~k~~~~~~p~ 119 (175)
.|+++|..+|++.|.+.---+..+.. +...+++++
T Consensus 20 ~G~~~GA~~Gal~G~l~d~gI~d~~~------~ev~~~L~~ 54 (102)
T PF06897_consen 20 LGAAVGAAAGALAGALSDYGIDDEFI------KEVGEALKP 54 (102)
T ss_pred HHHHHHHHHHHHHhHHhhCCCCHHHH------HHHHhhcCC
Confidence 44555555555555555444444432 335566653
No 35
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=59.39 E-value=11 Score=29.53 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=22.3
Q ss_pred CCCccchhhhHHHHHHHHHHHhHHhhc
Q 030572 70 RANSAGFFVGGFVLGGIIVGTLGCVYA 96 (175)
Q Consensus 70 ~~Gf~ggFl~G~llGGaVGGvlGlL~A 96 (175)
..|.++-||.|++++.++-.+|=++.|
T Consensus 12 ~~g~sW~~LVGVv~~al~~SlLIalaa 38 (102)
T PF15176_consen 12 EGGRSWPFLVGVVVTALVTSLLIALAA 38 (102)
T ss_pred CCCcccHhHHHHHHHHHHHHHHHHHHH
Confidence 447789999999999999888766654
No 36
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=58.66 E-value=8.3 Score=29.82 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=15.6
Q ss_pred chhhhHHHHHHHHHHHhHHhhcc
Q 030572 75 GFFVGGFVLGGIIVGTLGCVYAP 97 (175)
Q Consensus 75 ggFl~G~llGGaVGGvlGlL~AP 97 (175)
.....|.++|+++|+++|.++-.
T Consensus 50 ~~~~~ga~~GA~~GA~~Ga~~G~ 72 (118)
T PF13436_consen 50 ENTAGGAAIGAAAGAAIGAIIGG 72 (118)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCC
Confidence 55566777777777777776665
No 37
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=58.20 E-value=41 Score=24.28 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhHHhhcccchHHHHhhhhhhHHHHhhCCCcchhH--HHHHHHHHHhHHHHHHHHHHHH
Q 030572 81 FVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDE--EKALEKTRKILTEKIAQLNSAI 146 (175)
Q Consensus 81 ~llGGaVGGvlGlL~APR~~kel~~~l~d~k~~~~~~p~~~~de--e~~iE~arr~Le~kIaqLN~AI 146 (175)
.+++-++|.++|+.+|-+.=+ . -.++-|+..++. .-...+.|+=.|.+|.|.-.++
T Consensus 3 iilali~G~~~Gff~ar~~~~---k-------~l~~NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARKYME---K-------QLKENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---H-------HHHHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 455666677777777643221 1 123457776663 2334556666777777765544
No 38
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=58.20 E-value=30 Score=32.96 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=7.1
Q ss_pred HHHHHHHHhHHhhcc
Q 030572 83 LGGIIVGTLGCVYAP 97 (175)
Q Consensus 83 lGGaVGGvlGlL~AP 97 (175)
+|.++|.++|+.++-
T Consensus 6 vG~iiG~~ig~~~ak 20 (514)
T TIGR03319 6 VALIVGLIIGYLLRK 20 (514)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444455565543
No 39
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=57.99 E-value=6.3 Score=33.40 Aligned_cols=14 Identities=21% Similarity=0.543 Sum_probs=10.8
Q ss_pred HHHHHHHHHhHHhh
Q 030572 82 VLGGIIVGTLGCVY 95 (175)
Q Consensus 82 llGGaVGGvlGlL~ 95 (175)
++|++|||++|+++
T Consensus 347 inGallG~liG~~~ 360 (367)
T PF04286_consen 347 INGALLGGLIGLLQ 360 (367)
T ss_pred hhhHHHHHHHHHHH
Confidence 57888888888775
No 40
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=56.86 E-value=50 Score=27.30 Aligned_cols=23 Identities=9% Similarity=-0.117 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHhHHhhcccc
Q 030572 77 FVGGFVLGGIIVGTLGCVYAPQI 99 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGlL~APR~ 99 (175)
.|.|+++|.++|.++...+.-+.
T Consensus 6 ~i~~~~vG~~~G~~~~~~~~~~~ 28 (201)
T PF12072_consen 6 AIVALIVGIGIGYLVRKKINRKK 28 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777776666655533
No 41
>PF12664 DUF3789: Protein of unknown function (DUF3789); InterPro: IPR024522 This family of functionally uncharacterised bacterial proteins are approximately 40 amino acids in length. They contain two completely conserved residues (V and C) that may be functionally important.
Probab=56.79 E-value=8.8 Score=24.65 Aligned_cols=26 Identities=42% Similarity=0.556 Sum_probs=20.9
Q ss_pred hhhhHHHHHHHHHHHhHHhhcccchHHH
Q 030572 76 FFVGGFVLGGIIVGTLGCVYAPQISKAL 103 (175)
Q Consensus 76 gFl~G~llGGaVGGvlGlL~APR~~kel 103 (175)
.|+.||.+|+.+|-++=|++ |++|+.
T Consensus 4 ~~~l~~~~G~~~GVvlMCll--q~gk~a 29 (34)
T PF12664_consen 4 KDILGFSLGGMIGVVLMCLL--QIGKQA 29 (34)
T ss_pred HHHHHHHccchHhHHHHHHH--HhhHHh
Confidence 58899999999999988886 556553
No 42
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=55.11 E-value=8.8 Score=32.32 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=22.9
Q ss_pred chhhhHHHHHHHHHHHhHHhhcccchH
Q 030572 75 GFFVGGFVLGGIIVGTLGCVYAPQISK 101 (175)
Q Consensus 75 ggFl~G~llGGaVGGvlGlL~APR~~k 101 (175)
=--+.+.++|+.++|++|+++||=+--
T Consensus 291 ~~~l~~~~~g~~~fG~~G~il~~pi~~ 317 (327)
T PF01594_consen 291 LLILLAVIIGGYLFGFIGLILAPPILA 317 (327)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 356789999999999999999996543
No 43
>PRK09966 putative inner membrane diguanylate cyclase; Provisional
Probab=54.02 E-value=1e+02 Score=26.67 Aligned_cols=31 Identities=23% Similarity=0.180 Sum_probs=17.4
Q ss_pred hhhhHHHHHHHHHHHhHHhhcccchHHHHhh
Q 030572 76 FFVGGFVLGGIIVGTLGCVYAPQISKALAGA 106 (175)
Q Consensus 76 gFl~G~llGGaVGGvlGlL~APR~~kel~~~ 106 (175)
.++.+++++.++..++++.++-++-+-+..+
T Consensus 161 ~~~~~~ll~~~i~~~l~~~l~~~i~~Pl~~l 191 (407)
T PRK09966 161 VLTGCILLASGIAITLTRHLHNGLVEALKNI 191 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555566666666665555555553
No 44
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=52.54 E-value=1.1e+02 Score=24.90 Aligned_cols=29 Identities=24% Similarity=0.201 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHH----hHHhhcccchHHHHh
Q 030572 77 FVGGFVLGGIIVGT----LGCVYAPQISKALAG 105 (175)
Q Consensus 77 Fl~G~llGGaVGGv----lGlL~APR~~kel~~ 105 (175)
|..-++.--+.+.+ |..++-|.+.+-+.+
T Consensus 30 ~~~q~~~~lI~F~iL~~ll~k~l~~PI~~~l~~ 62 (181)
T PRK13454 30 FPNQIFWLLVTLVAIYFVLTRVALPRIGAVLAE 62 (181)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443444444 455557777776644
No 45
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=51.98 E-value=94 Score=27.81 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHHHhHHhhcccchHHHHhhhhhhHHHHh------hCCCcchhH----HHHHHHHHHhHHHHHHHHHHHH
Q 030572 77 FVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMR------KLPKFIYDE----EKALEKTRKILTEKIAQLNSAI 146 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGlL~APR~~kel~~~l~d~k~~~~------~~p~~~~de----e~~iE~arr~Le~kIaqLN~AI 146 (175)
+++++++.-+++.+++++++-++.+.+..+...-+.+.+ ..+....|| -..++..+.+|.+.+.++.+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~r~i~~pl~~l~~~~~~ia~gdl~~~~~~~~~~dE~g~l~~~~~~m~~~l~~~~~~~~~~~ 233 (565)
T PRK10935 154 SLLGLILILTLVFFTVRFTRRQVVAPLNQLVTASQQIEKGQFDHIPLDTTLPNELGLLAKAFNQMSSELHKLYRSLEASV 233 (565)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555566677777777776553311122211 111111121 1346666677777777777666
Q ss_pred HHHHHhhc
Q 030572 147 DDVSAQLR 154 (175)
Q Consensus 147 ddvr~QL~ 154 (175)
++...++.
T Consensus 234 ~~~~~~~~ 241 (565)
T PRK10935 234 EEKTRKLT 241 (565)
T ss_pred HHHHHHHH
Confidence 66544443
No 46
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=51.61 E-value=85 Score=26.39 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=11.6
Q ss_pred HHHHHhHHhhcccchHHHHh
Q 030572 86 IIVGTLGCVYAPQISKALAG 105 (175)
Q Consensus 86 aVGGvlGlL~APR~~kel~~ 105 (175)
++..+|..++-|++.+-+.+
T Consensus 65 iL~~lL~k~~~~pI~~vLe~ 84 (204)
T PRK09174 65 LFYLFMSRVILPRIGGIIET 84 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33345555566777776644
No 47
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=50.87 E-value=1.1e+02 Score=24.34 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=18.2
Q ss_pred chhhhHHHHHHHHHHHhHHhhcccchHHH
Q 030572 75 GFFVGGFVLGGIIVGTLGCVYAPQISKAL 103 (175)
Q Consensus 75 ggFl~G~llGGaVGGvlGlL~APR~~kel 103 (175)
+.|+.-++--.++.++|.+++-+-+.+-+
T Consensus 20 ~~~~~~iinflIl~~lL~~fl~kpI~~~l 48 (174)
T PRK07352 20 NLLETNLINLAIVIGLLYYFGRGFLGKIL 48 (174)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34555555566677777777766565555
No 48
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=50.48 E-value=63 Score=25.97 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=12.0
Q ss_pred hhhhHHHHHHHHHHHhHHhh
Q 030572 76 FFVGGFVLGGIIVGTLGCVY 95 (175)
Q Consensus 76 gFl~G~llGGaVGGvlGlL~ 95 (175)
-.++|+++|.++|-++-.++
T Consensus 4 eL~~gaalG~~~~eLlk~v~ 23 (147)
T PF05659_consen 4 ELVGGAALGAVFGELLKAVI 23 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666665554
No 49
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=50.45 E-value=14 Score=25.90 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=12.1
Q ss_pred ccchhhhHHHHHHHHHHHhHHhhc
Q 030572 73 SAGFFVGGFVLGGIIVGTLGCVYA 96 (175)
Q Consensus 73 f~ggFl~G~llGGaVGGvlGlL~A 96 (175)
|..|||.|.+ +.++++.|.+++
T Consensus 4 F~~G~l~G~~--~t~aa~a~av~~ 25 (54)
T PF11240_consen 4 FGKGFLTGVA--ATLAAIAGAVFT 25 (54)
T ss_pred hhhhHHHhHH--HHHHHHHHHHHH
Confidence 4555555544 345666666654
No 50
>PRK12482 flagellar motor protein MotA; Provisional
Probab=50.06 E-value=32 Score=30.72 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=16.8
Q ss_pred HHHHHhHHhhcccchHHHHhhh
Q 030572 86 IIVGTLGCVYAPQISKALAGAA 107 (175)
Q Consensus 86 aVGGvlGlL~APR~~kel~~~l 107 (175)
++||.+|.++..-.-+++....
T Consensus 37 V~GGt~ga~lis~p~~~~~~~~ 58 (287)
T PRK12482 37 ILGAGIGAMILGNPKSVLKEMW 58 (287)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 6788888888887777776655
No 51
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=48.75 E-value=73 Score=30.44 Aligned_cols=62 Identities=21% Similarity=0.372 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHHHhHHhhcccchHHHHhhhhhhHHHHhhCC-----------CcchhHHHHHHHHHHhHHHHH
Q 030572 77 FVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLP-----------KFIYDEEKALEKTRKILTEKI 139 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGlL~APR~~kel~~~l~d~k~~~~~~p-----------~~~~dee~~iE~arr~Le~kI 139 (175)
||.|+++--+|+-++|+++--|.-+....+ +++|.....+| .+..+..+..|.-+..|++.+
T Consensus 1 iiI~iivi~l~~~~~~~~~rk~~~k~i~~L-e~~k~~l~~~pv~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~ 73 (560)
T PF06160_consen 1 IIIGIIVIVLIIYIIGYIYRKRYYKEIDEL-EERKNELMNLPVADELSKVKKLNLTGQTEEKFEEWRQKWDEIV 73 (560)
T ss_pred CeehHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888877777776654 44444333333 445556777888888887666
No 52
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=48.48 E-value=14 Score=31.06 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=13.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 030572 127 ALEKTRKILTEKIAQLNSAIDD 148 (175)
Q Consensus 127 ~iE~arr~Le~kIaqLN~AIdd 148 (175)
..+.+.+.|++.|++|+..|+.
T Consensus 117 ~Vd~~~~eL~~eI~~L~~~i~~ 138 (171)
T PF04799_consen 117 QVDQTKNELEDEIKQLEKEIQR 138 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666654
No 53
>COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]
Probab=48.19 E-value=15 Score=34.95 Aligned_cols=66 Identities=23% Similarity=0.291 Sum_probs=45.9
Q ss_pred HhHHhhcccchHHHHhhhhhhHHHHhhCCCcchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Q 030572 90 TLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLRT 155 (175)
Q Consensus 90 vlGlL~APR~~kel~~~l~d~k~~~~~~p~~~~dee~~iE~arr~Le~kIaqLN~AIddvr~QL~~ 155 (175)
+||.++-|.++-...+..+--+....---.+.-|+|.+++..=..||+++....++|+++.++=..
T Consensus 157 LlgtivKPklGl~~e~~a~~~yE~~~GGvD~iKDDEnl~s~~f~~~e~R~~~~m~~i~~aeaeTGe 222 (429)
T COG1850 157 LLGTIVKPKLGLSPEEYAELAYELLSGGVDFIKDDENLTSPPFNRFEERVAKIMEAIDKAEAETGE 222 (429)
T ss_pred ccccccCcccCCCHHHHHHHHHHHHhcCcceecchhhccCcccccHHHHHHHHHHHHHHHHHhhCc
Confidence 577778887765543311000333344446666788889999999999999999999999877543
No 54
>PRK11280 hypothetical protein; Provisional
Probab=47.73 E-value=18 Score=30.48 Aligned_cols=17 Identities=41% Similarity=0.731 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhHHhhc
Q 030572 80 GFVLGGIIVGTLGCVYA 96 (175)
Q Consensus 80 G~llGGaVGGvlGlL~A 96 (175)
|.++|+++||++|..|.
T Consensus 67 Gtv~Gav~Gg~~G~~iG 83 (170)
T PRK11280 67 GSVLGAVAGGVLGHQFG 83 (170)
T ss_pred hHHHHHHHHHHhhhhcc
Confidence 34444444444444333
No 55
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=47.72 E-value=70 Score=22.67 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccc
Q 030572 124 EEKALEKTRKILTEKIAQLNSAIDDVSAQLRTE 156 (175)
Q Consensus 124 ee~~iE~arr~Le~kIaqLN~AIddvr~QL~~~ 156 (175)
-...++.-...++..+.+|..+|+.+...|...
T Consensus 73 ~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~ 105 (127)
T smart00502 73 KLKVLEQQLESLTQKQEKLSHAINFTEEALNSG 105 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345677778888899999999999888888765
No 56
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=47.53 E-value=16 Score=30.92 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=10.5
Q ss_pred chhhhHHHHHHHHHHHhHHhh
Q 030572 75 GFFVGGFVLGGIIVGTLGCVY 95 (175)
Q Consensus 75 ggFl~G~llGGaVGGvlGlL~ 95 (175)
.-++.|.++||++|...|...
T Consensus 13 ~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 13 LLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444443
No 57
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=47.03 E-value=74 Score=27.18 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=22.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhccc
Q 030572 127 ALEKTRKILTEKIAQLNSAIDDVSAQLRTE 156 (175)
Q Consensus 127 ~iE~arr~Le~kIaqLN~AIddvr~QL~~~ 156 (175)
..|..+..+-..-.+++++++.+|+.+-..
T Consensus 130 ~~~~~~~~l~~~q~~v~~~~~~~R~~l~~~ 159 (284)
T PF12805_consen 130 DDEQLRIELAQQQIKVNEALEQARELLLRR 159 (284)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466667777778888888888888877554
No 58
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=46.99 E-value=21 Score=27.65 Aligned_cols=22 Identities=14% Similarity=0.037 Sum_probs=10.2
Q ss_pred hhhhHHHHHHHHHHHhHHhhcc
Q 030572 76 FFVGGFVLGGIIVGTLGCVYAP 97 (175)
Q Consensus 76 gFl~G~llGGaVGGvlGlL~AP 97 (175)
+-+.|..+|++||++.|.....
T Consensus 76 ga~~GAa~Ga~~G~~~g~~~~~ 97 (118)
T PF13436_consen 76 GAAIGAAAGAAVGAAAGAARGR 97 (118)
T ss_pred chHHHHHHHHHHHHHhhhhhhh
Confidence 3444444444444444444433
No 59
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=46.91 E-value=15 Score=26.70 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.3
Q ss_pred hhhhHHHHHHHHHHHhHHhhcccchH
Q 030572 76 FFVGGFVLGGIIVGTLGCVYAPQISK 101 (175)
Q Consensus 76 gFl~G~llGGaVGGvlGlL~APR~~k 101 (175)
||+-|..||+++|.+.|.+-+=|.+-
T Consensus 10 G~~MG~~VG~~~G~l~G~~~~~r~g~ 35 (67)
T PF10247_consen 10 GFMMGGAVGGAFGALFGTFSAFRYGA 35 (67)
T ss_pred HHHHhhHHHhhhhhhhhhHHHhccCC
Confidence 78999999999999999988776653
No 60
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=46.82 E-value=1.1e+02 Score=22.52 Aligned_cols=21 Identities=24% Similarity=0.044 Sum_probs=12.9
Q ss_pred HHHHHHhHHhhcccchHHHHh
Q 030572 85 GIIVGTLGCVYAPQISKALAG 105 (175)
Q Consensus 85 GaVGGvlGlL~APR~~kel~~ 105 (175)
.++.+++.+++.|.+.+-+.+
T Consensus 10 lil~~~l~~~~~~pi~~~l~~ 30 (132)
T PF00430_consen 10 LILFFLLNKFLYKPIKKFLDE 30 (132)
T ss_dssp HHHHHHHHHHTHHHHHHHCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777766665533
No 61
>PRK12704 phosphodiesterase; Provisional
Probab=46.25 E-value=73 Score=30.48 Aligned_cols=14 Identities=7% Similarity=0.207 Sum_probs=8.7
Q ss_pred HHHHHHHHhHHhhc
Q 030572 83 LGGIIVGTLGCVYA 96 (175)
Q Consensus 83 lGGaVGGvlGlL~A 96 (175)
+|+++|.++|+.+.
T Consensus 12 vg~~iG~~ig~~i~ 25 (520)
T PRK12704 12 VALVVGAVIGYFVR 25 (520)
T ss_pred HHHHHHHHHHHHHH
Confidence 55566666776663
No 62
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=45.40 E-value=12 Score=32.45 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=17.7
Q ss_pred ccchhhhHHHHHHHHHHHhHHhhc
Q 030572 73 SAGFFVGGFVLGGIIVGTLGCVYA 96 (175)
Q Consensus 73 f~ggFl~G~llGGaVGGvlGlL~A 96 (175)
+.-||+.|=.+|.++|.+||-+|=
T Consensus 10 ~~~G~~~~g~~Ga~~G~~~Gh~~d 33 (267)
T PRK09430 10 FAFGFLFGGFFGALLGLLIGHMFD 33 (267)
T ss_pred HHHHHHHhhHHHHHHHHHHHhHHh
Confidence 344666666888888888888774
No 63
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=44.59 E-value=63 Score=24.94 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=19.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 030572 126 KALEKTRKILTEKIAQLNSAIDDVSAQL 153 (175)
Q Consensus 126 ~~iE~arr~Le~kIaqLN~AIddvr~QL 153 (175)
+-++.-|+.|++.|..-++.|++...++
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777777777777777777765544
No 64
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=44.21 E-value=19 Score=26.83 Aligned_cols=19 Identities=21% Similarity=0.143 Sum_probs=15.1
Q ss_pred CCCCCCccchhhhHHHHHH
Q 030572 67 EGGRANSAGFFVGGFVLGG 85 (175)
Q Consensus 67 ~~~~~Gf~ggFl~G~llGG 85 (175)
||.-|.+.+||++|+++|.
T Consensus 82 ~D~~N~~~aG~~aGa~~~~ 100 (128)
T PF02466_consen 82 DDPWNSAIAGAAAGAVLGL 100 (128)
T ss_pred cccchhHHHHHHHHHHHHh
Confidence 4667888899999988765
No 65
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=43.91 E-value=96 Score=22.82 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=11.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q 030572 127 ALEKTRKILTEKIAQLNSAID 147 (175)
Q Consensus 127 ~iE~arr~Le~kIaqLN~AId 147 (175)
+.+.|++ ++++|.-|..=+|
T Consensus 47 L~~~a~r-m~eRI~tLE~ILd 66 (75)
T PF06667_consen 47 LYEQAER-MEERIETLERILD 66 (75)
T ss_pred HHHHHHH-HHHHHHHHHHHHc
Confidence 4445544 7777777765544
No 66
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=43.76 E-value=1.5e+02 Score=22.83 Aligned_cols=31 Identities=29% Similarity=0.261 Sum_probs=19.5
Q ss_pred chhhhHHHHHHHHHHHhHHhhcccchHHHHh
Q 030572 75 GFFVGGFVLGGIIVGTLGCVYAPQISKALAG 105 (175)
Q Consensus 75 ggFl~G~llGGaVGGvlGlL~APR~~kel~~ 105 (175)
+-|+.-++.=.++..+|..++-|.+.+-+.+
T Consensus 5 ~~~~~~~i~Flil~~il~~~~~~pi~~~l~~ 35 (156)
T PRK05759 5 GTLIGQLIAFLILVWFIMKFVWPPIMKALEE 35 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4455555555566667777777777776643
No 67
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=43.45 E-value=21 Score=30.20 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=19.5
Q ss_pred chhhhHHHHHHHHHHHhHHhhccc
Q 030572 75 GFFVGGFVLGGIIVGTLGCVYAPQ 98 (175)
Q Consensus 75 ggFl~G~llGGaVGGvlGlL~APR 98 (175)
..|+.=+++||++||++|++.+--
T Consensus 9 ~~~~~~illg~~iGg~~G~~~~~~ 32 (248)
T PF11368_consen 9 LRFLLLILLGGLIGGFIGFFIGRI 32 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999976643
No 68
>PF04930 FUN14: FUN14 family; InterPro: IPR007014 This is a family of short proteins found in eukaryotes and some archaea. Although the function of these proteins is not known they may contain transmembrane helices.
Probab=43.44 E-value=11 Score=27.94 Aligned_cols=14 Identities=36% Similarity=0.638 Sum_probs=11.5
Q ss_pred CCccchhhhHHHHH
Q 030572 71 ANSAGFFVGGFVLG 84 (175)
Q Consensus 71 ~Gf~ggFl~G~llG 84 (175)
..+.++|++||++|
T Consensus 85 ~~~~~gF~~Gf~lG 98 (100)
T PF04930_consen 85 LPFSAGFLAGFLLG 98 (100)
T ss_pred ccHhHHHHHHHHHH
Confidence 36778999999987
No 69
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=43.44 E-value=21 Score=28.07 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHhHHhhccc
Q 030572 78 VGGFVLGGIIVGTLGCVYAPQ 98 (175)
Q Consensus 78 l~G~llGGaVGGvlGlL~APR 98 (175)
|-|+-+|++||-+||+|++-|
T Consensus 84 Wq~VGvaAaVGlllGlLlsRR 104 (104)
T COG4575 84 WQGVGVAAAVGLLLGLLLSRR 104 (104)
T ss_pred chHHHHHHHHHHHHHHHHhcC
Confidence 557778999999999998754
No 70
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=42.93 E-value=32 Score=26.20 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=11.9
Q ss_pred chhhhHHH-----HHHHHHHHhHHhhcc
Q 030572 75 GFFVGGFV-----LGGIIVGTLGCVYAP 97 (175)
Q Consensus 75 ggFl~G~l-----lGGaVGGvlGlL~AP 97 (175)
.|+|.|++ +|.++|+.+|.|...
T Consensus 7 ~G~LiGll~~~pl~G~~~GA~~Gal~G~ 34 (102)
T PF06897_consen 7 WGLLIGLLFGPPLLGAAVGAAAGALAGA 34 (102)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhH
Confidence 44555555 444555555555443
No 71
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=42.78 E-value=1.2e+02 Score=29.21 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=27.7
Q ss_pred chhhhHHHHHHHHHHHhHHhhcccchHHHHh
Q 030572 75 GFFVGGFVLGGIIVGTLGCVYAPQISKALAG 105 (175)
Q Consensus 75 ggFl~G~llGGaVGGvlGlL~APR~~kel~~ 105 (175)
..|+.|.++|-.+..+||++++-++.+-+..
T Consensus 30 ~i~~~gt~ia~~it~ll~~~~~rtit~pi~~ 60 (459)
T COG5002 30 NILISGTLIALIITALLGILLARTITKPITD 60 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 4688999999999999999999999887755
No 72
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.05 E-value=14 Score=27.67 Aligned_cols=27 Identities=19% Similarity=0.096 Sum_probs=22.7
Q ss_pred chhhhHHHHHHHHHHHhHHhhcccchH
Q 030572 75 GFFVGGFVLGGIIVGTLGCVYAPQISK 101 (175)
Q Consensus 75 ggFl~G~llGGaVGGvlGlL~APR~~k 101 (175)
=||+-|+.+|+++|.+.|-.-+-|.+-
T Consensus 13 mG~~mG~avG~a~G~lfGgf~~lR~g~ 39 (75)
T KOG4096|consen 13 MGLMMGGAVGGATGALFGGFAALRYGP 39 (75)
T ss_pred HHHHHHhhhhhhhhhhccchhheeecC
Confidence 478999999999999999888777653
No 73
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=41.92 E-value=1.4e+02 Score=24.62 Aligned_cols=33 Identities=9% Similarity=-0.051 Sum_probs=23.7
Q ss_pred ccchhhhHHHHHHHHHHHhHHhhcccchHHHHh
Q 030572 73 SAGFFVGGFVLGGIIVGTLGCVYAPQISKALAG 105 (175)
Q Consensus 73 f~ggFl~G~llGGaVGGvlGlL~APR~~kel~~ 105 (175)
|.|-|+--++.=+++.-++..++-|++.+-+..
T Consensus 9 ~~sqifw~iI~FlILy~ll~kf~~ppI~~iLe~ 41 (155)
T PRK06569 9 YYSQIFWLIVTFGLLYIFVYKFITPKAEEIFNN 41 (155)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 455666666666677778888889999887744
No 74
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=41.91 E-value=84 Score=26.26 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=25.6
Q ss_pred CccchhhhHHHHHHHHHHHhHHhhcccchHHHHhhh
Q 030572 72 NSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAA 107 (175)
Q Consensus 72 Gf~ggFl~G~llGGaVGGvlGlL~APR~~kel~~~l 107 (175)
.++++|..|.+.|++.+.+-|+-=+|.- +.++..+
T Consensus 16 ~~G~af~~G~~~G~~~g~~~G~rnsp~g-~rl~g~l 50 (170)
T TIGR00980 16 DFGGAFAMGTIGGSIFQAFKGFRNSPKG-EKLVGAM 50 (170)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCCcc-chhhHHH
Confidence 4568899999998888888888777643 3455544
No 75
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=41.71 E-value=72 Score=23.06 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=14.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 030572 125 EKALEKTRKILTEKIAQLNSAIDD 148 (175)
Q Consensus 125 e~~iE~arr~Le~kIaqLN~AIdd 148 (175)
.+.++.+|.++++.+.++++.+.+
T Consensus 26 ~~~~~~~r~~~~~~~~~a~~~~~~ 49 (94)
T PF05957_consen 26 GEKADEARDRAEEALDDARDRAED 49 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666655
No 76
>PF11981 DUF3482: Domain of unknown function (DUF3482); InterPro: IPR021871 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 289 to 301 amino acids in length. This domain is found associated with PF01926 from PFAM.
Probab=40.77 E-value=20 Score=31.96 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=15.8
Q ss_pred HhHHHHHHHHHHHHHHHHHhhc
Q 030572 133 KILTEKIAQLNSAIDDVSAQLR 154 (175)
Q Consensus 133 r~Le~kIaqLN~AIddvr~QL~ 154 (175)
..|.+.-.+|-..+..+|++=.
T Consensus 245 ~~w~~~~~~l~~~~~~aR~~p~ 266 (292)
T PF11981_consen 245 AAWREQRDKLPRFLKKARKHPE 266 (292)
T ss_pred hhhHHHHHHHHHHHHHHHcCCC
Confidence 4576767788888888877653
No 77
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.75 E-value=20 Score=32.37 Aligned_cols=13 Identities=31% Similarity=0.710 Sum_probs=6.5
Q ss_pred CccchhhhHHHHH
Q 030572 72 NSAGFFVGGFVLG 84 (175)
Q Consensus 72 Gf~ggFl~G~llG 84 (175)
|+.|+.++|+++|
T Consensus 31 ~~~g~l~ggl~~g 43 (281)
T COG4395 31 GMLGGLAGGLLMG 43 (281)
T ss_pred hhhhHHHHHHHHh
Confidence 4455555555444
No 78
>PRK10132 hypothetical protein; Provisional
Probab=40.64 E-value=27 Score=27.05 Aligned_cols=21 Identities=5% Similarity=-0.051 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHhHHhhccc
Q 030572 78 VGGFVLGGIIVGTLGCVYAPQ 98 (175)
Q Consensus 78 l~G~llGGaVGGvlGlL~APR 98 (175)
|..+-++..||-++|+|++.|
T Consensus 87 w~svgiaagvG~llG~Ll~RR 107 (108)
T PRK10132 87 WCSVGTAAAVGIFIGALLSLR 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 445556777888999988765
No 79
>PRK10540 lipoprotein; Provisional
Probab=40.16 E-value=16 Score=26.64 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=5.5
Q ss_pred HHHHHHHhHHhhc
Q 030572 84 GGIIVGTLGCVYA 96 (175)
Q Consensus 84 GGaVGGvlGlL~A 96 (175)
|.++|+++|.++.
T Consensus 55 g~~~Ga~~G~~~G 67 (72)
T PRK10540 55 GTLGGAAVGGVIG 67 (72)
T ss_pred HHHHHHHHHHHHh
Confidence 3344444444443
No 80
>PRK09109 motC flagellar motor protein; Reviewed
Probab=39.91 E-value=75 Score=27.38 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=15.8
Q ss_pred HHHHHhHHhhcccchHHHHhhh
Q 030572 86 IIVGTLGCVYAPQISKALAGAA 107 (175)
Q Consensus 86 aVGGvlGlL~APR~~kel~~~l 107 (175)
++||.+|.++..-.-++.....
T Consensus 39 V~Ggt~~a~~i~~~~~~~~~~~ 60 (246)
T PRK09109 39 VIGGTLGAVLLQTPLAVFKRAF 60 (246)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 6788888888776666665544
No 81
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=39.90 E-value=22 Score=30.00 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=22.4
Q ss_pred chhhhHHHHHHHHHHHhHHhhcccchH
Q 030572 75 GFFVGGFVLGGIIVGTLGCVYAPQISK 101 (175)
Q Consensus 75 ggFl~G~llGGaVGGvlGlL~APR~~k 101 (175)
---+.+.++|+.++|++|.++||=+--
T Consensus 304 ~~vl~~~l~g~~~~G~~G~~l~~~~~~ 330 (341)
T TIGR02872 304 LATLISMYIGLKLFGFLGLIFGPVIVV 330 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999986543
No 82
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=39.87 E-value=1.1e+02 Score=27.05 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=38.3
Q ss_pred hhhHHHHHHHHHHHhHHhh-cccchHHHHhhhhhhHHHHhhCCCcchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 030572 77 FVGGFVLGGIIVGTLGCVY-APQISKALAGAAADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQL 153 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGlL~-APR~~kel~~~l~d~k~~~~~~p~~~~dee~~iE~arr~Le~kIaqLN~AIddvr~QL 153 (175)
.|++.+|+=+||-+||.-+ .+.+...+.+ + ...+. ++.+.++..++.++.+++..++-|+++..++
T Consensus 10 Sl~aVFlALavGI~lG~~~l~~~l~~~l~~----~------~~~lr-~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~l 76 (308)
T PF11382_consen 10 SLAAVFLALAVGIVLGSGPLQPNLIDSLED----Q------FDSLR-EENDELRAELDALQAQLNAADQFIAAVAPRL 76 (308)
T ss_pred HHHHHHHHHHHHHHhcchhhchhhhhhhhh----h------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888654 4444444322 0 11111 1233456666667777777777777755544
No 83
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=39.71 E-value=25 Score=31.20 Aligned_cols=16 Identities=19% Similarity=0.519 Sum_probs=11.7
Q ss_pred HHHHHHHHhHHHHHHH
Q 030572 126 KALEKTRKILTEKIAQ 141 (175)
Q Consensus 126 ~~iE~arr~Le~kIaq 141 (175)
-.+|+|+--||++++.
T Consensus 222 L~feeA~P~Le~~la~ 237 (243)
T PRK13731 222 LKFEEAKPVLEDQLAK 237 (243)
T ss_pred ccHHHhhHHHHHHHHH
Confidence 3477888888887764
No 84
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=39.70 E-value=12 Score=34.36 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=18.3
Q ss_pred CCCccchhhhHHHHHH--HHHHHhHHhh
Q 030572 70 RANSAGFFVGGFVLGG--IIVGTLGCVY 95 (175)
Q Consensus 70 ~~Gf~ggFl~G~llGG--aVGGvlGlL~ 95 (175)
++|.+.|-|+|.-|.. +|||++|+|.
T Consensus 361 ~s~LstgaIaGIsvavvvvVgglvGfLc 388 (397)
T PF03302_consen 361 KSGLSTGAIAGISVAVVVVVGGLVGFLC 388 (397)
T ss_pred cccccccceeeeeehhHHHHHHHHHHHh
Confidence 4577778888876664 4677788774
No 85
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=39.47 E-value=9.8 Score=27.55 Aligned_cols=18 Identities=11% Similarity=0.344 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHhHHh
Q 030572 77 FVGGFVLGGIIVGTLGCV 94 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGlL 94 (175)
.++|++.|++||.++.++
T Consensus 10 vlaavIaG~Vvgll~ail 27 (64)
T PF01034_consen 10 VLAAVIAGGVVGLLFAIL 27 (64)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666555443
No 86
>PRK10404 hypothetical protein; Provisional
Probab=39.34 E-value=30 Score=26.42 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHhHHhhccc
Q 030572 79 GGFVLGGIIVGTLGCVYAPQ 98 (175)
Q Consensus 79 ~G~llGGaVGGvlGlL~APR 98 (175)
.++-++..||-+||+|+..|
T Consensus 82 ~avGiaagvGlllG~Ll~RR 101 (101)
T PRK10404 82 QGIGVGAAVGLVLGLLLARR 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 34456777888888887654
No 87
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=39.11 E-value=20 Score=32.70 Aligned_cols=20 Identities=25% Similarity=0.622 Sum_probs=11.8
Q ss_pred chhhhHHHHHHHHHHHhHHhhc
Q 030572 75 GFFVGGFVLGGIIVGTLGCVYA 96 (175)
Q Consensus 75 ggFl~G~llGGaVGGvlGlL~A 96 (175)
..|| +++|+++|+++|+.++
T Consensus 338 r~lI--lvl~~llG~~lg~~~v 357 (377)
T PRK10381 338 KALI--VILAALIGGMLACGFV 357 (377)
T ss_pred hhHH--HHHHHHHHHHHHHHHH
Confidence 4454 4566666666666443
No 88
>PF03945 Endotoxin_N: delta endotoxin, N-terminal domain; InterPro: IPR005639 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain (IPR005638 from INTERPRO) that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved N-terminal domain.; GO: 0009405 pathogenesis; PDB: 3EB7_A 1I5P_A 2C9K_A 1CIY_A 1JI6_A 1DLC_A 1W99_A.
Probab=39.08 E-value=97 Score=25.02 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=21.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Q 030572 125 EKALEKTRKILTEKIAQLNSAIDDVSAQLRT 155 (175)
Q Consensus 125 e~~iE~arr~Le~kIaqLN~AIddvr~QL~~ 155 (175)
++..+..+..+...+.-|+..+++-...+..
T Consensus 56 ~~I~~~~~~~~~~~l~gl~~~~~~y~~~~~~ 86 (226)
T PF03945_consen 56 QKITEYDINILNAELNGLQNLLQDYNDALEN 86 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777888888888888876665554
No 89
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=38.80 E-value=8.5 Score=28.99 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=16.7
Q ss_pred CCccchhhhHHHHHHH--HHHHhHHhhcc
Q 030572 71 ANSAGFFVGGFVLGGI--IVGTLGCVYAP 97 (175)
Q Consensus 71 ~Gf~ggFl~G~llGGa--VGGvlGlL~AP 97 (175)
+|...|-++|..+|.+ |++++|+|+-.
T Consensus 61 ~~ls~gaiagi~vg~~~~v~~lv~~l~w~ 89 (96)
T PTZ00382 61 SGLSTGAIAGISVAVVAVVGGLVGFLCWW 89 (96)
T ss_pred CCcccccEEEEEeehhhHHHHHHHHHhhe
Confidence 3555666777666655 55666776544
No 90
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=38.65 E-value=45 Score=26.39 Aligned_cols=19 Identities=11% Similarity=0.191 Sum_probs=9.4
Q ss_pred hhhHHHHHHHHHHHhHHhh
Q 030572 77 FVGGFVLGGIIVGTLGCVY 95 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGlL~ 95 (175)
|+..+++|+...+++.|++
T Consensus 40 ~vl~~~~~~~~~~~~~Yi~ 58 (118)
T PRK10697 40 VVLSIFFGLFVFTLVAYII 58 (118)
T ss_pred HHHHHHHhhchHHHHHHHH
Confidence 4555666543334444443
No 91
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=38.43 E-value=1.9e+02 Score=23.05 Aligned_cols=21 Identities=24% Similarity=0.063 Sum_probs=12.4
Q ss_pred HHHHHHhHHhhcccchHHHHh
Q 030572 85 GIIVGTLGCVYAPQISKALAG 105 (175)
Q Consensus 85 GaVGGvlGlL~APR~~kel~~ 105 (175)
.++.++|.+++-|.+.+-+.+
T Consensus 29 lil~~lL~~~l~kpi~~~l~~ 49 (175)
T PRK14472 29 VIVLLILKKIAWGPILSALEE 49 (175)
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 345555666666666666533
No 92
>PF08183 SpoV: Stage V sporulation protein family; InterPro: IPR012609 This family consists of the stage V sporulation (SpoV) proteins of Bacillus subtilis which includes SpoVM. SpoVM is an small, 26 residue-long protein that is produced in the mother cell chamber of the sporangium during the process of sporulation in B. subtilis. SpoVM forms an amphipathic alpha-helix and is recruited to the polar septum shortly after the sporangium undergoes asymmetric division. The function of SpoVM depends on proper subcellular localisation [].
Probab=38.42 E-value=27 Score=21.43 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=8.1
Q ss_pred HHHHHHHHHhHHh
Q 030572 82 VLGGIIVGTLGCV 94 (175)
Q Consensus 82 llGGaVGGvlGlL 94 (175)
++||+|+.+|+.+
T Consensus 11 f~Gg~v~~~L~sf 23 (26)
T PF08183_consen 11 FLGGVVRALLFSF 23 (26)
T ss_pred HHhHHHHHHHHHH
Confidence 3566777776643
No 93
>PF03035 RNA_capsid: Calicivirus putative RNA polymerase/capsid protein; InterPro: IPR004278 Caliciviruses are a small round-structured virus group defined by RNA-dependent RNA polymerase and capsid diversity.
Probab=38.12 E-value=91 Score=27.56 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=11.0
Q ss_pred chhhhHHHHHHHHHHHhHHhhccc
Q 030572 75 GFFVGGFVLGGIIVGTLGCVYAPQ 98 (175)
Q Consensus 75 ggFl~G~llGGaVGGvlGlL~APR 98 (175)
|.||+| |.|.++|+.+|.|+---
T Consensus 3 gAf~a~-lAgd~~g~~vgslI~AG 25 (226)
T PF03035_consen 3 GAFIAG-LAGDALGSGVGSLINAG 25 (226)
T ss_pred HHHHHH-HHHHHhhhhHHHHHHHH
Confidence 344433 33444555555555433
No 94
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.66 E-value=23 Score=28.34 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=13.9
Q ss_pred cchhhhHHHHHHHHHHHh
Q 030572 74 AGFFVGGFVLGGIIVGTL 91 (175)
Q Consensus 74 ~ggFl~G~llGGaVGGvl 91 (175)
+..||+|.+||..+|-++
T Consensus 49 ssefIsGilVGa~iG~ll 66 (116)
T COG5336 49 SSEFISGILVGAGIGWLL 66 (116)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578899999888777554
No 95
>COG2747 FlgM Negative regulator of flagellin synthesis (anti-sigma28 factor) [Transcription / Cell motility and secretion / Intracellular trafficking and secretion]
Probab=37.00 E-value=25 Score=26.92 Aligned_cols=15 Identities=40% Similarity=0.658 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHH
Q 030572 134 ILTEKIAQLNSAIDD 148 (175)
Q Consensus 134 ~Le~kIaqLN~AIdd 148 (175)
-.++||++|++||++
T Consensus 58 ~~~~kVeeiK~aI~~ 72 (93)
T COG2747 58 IREEKVEELKQAIEN 72 (93)
T ss_pred hhHHHHHHHHHHHHc
Confidence 478999999999986
No 96
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=36.96 E-value=38 Score=24.37 Aligned_cols=27 Identities=26% Similarity=0.143 Sum_probs=20.4
Q ss_pred CccchhhhHHHHHHHHHHHhHHhhccc
Q 030572 72 NSAGFFVGGFVLGGIIVGTLGCVYAPQ 98 (175)
Q Consensus 72 Gf~ggFl~G~llGGaVGGvlGlL~APR 98 (175)
+..=+++.++++.-++-++||+++++.
T Consensus 33 ~~~v~~v~~~~~~c~~S~~lG~~~~~~ 59 (60)
T PF06072_consen 33 RLAVAIVFAVVALCVLSGGLGALVAWH 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334466777888888888999998874
No 97
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=36.61 E-value=48 Score=21.55 Aligned_cols=18 Identities=22% Similarity=0.512 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 030572 134 ILTEKIAQLNSAIDDVSA 151 (175)
Q Consensus 134 ~Le~kIaqLN~AIddvr~ 151 (175)
+.|.|+++|.++|.+.++
T Consensus 19 R~E~kld~L~~~i~~L~~ 36 (38)
T PF12841_consen 19 RIEKKLDELTESINELSE 36 (38)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 467777888887777544
No 98
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=36.10 E-value=2.5e+02 Score=27.38 Aligned_cols=29 Identities=14% Similarity=-0.170 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHhHHhhcccchHHHHhh
Q 030572 78 VGGFVLGGIIVGTLGCVYAPQISKALAGA 106 (175)
Q Consensus 78 l~G~llGGaVGGvlGlL~APR~~kel~~~ 106 (175)
+...++..+++.++.++++-++.+-++.+
T Consensus 409 ~~~~l~illi~~li~~~~a~~i~~pI~~L 437 (703)
T TIGR03785 409 FNVILAIMSIGTLALFGFASWISWRIRRL 437 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555566666777676666553
No 99
>PRK08456 flagellar motor protein MotA; Validated
Probab=35.94 E-value=96 Score=26.83 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=11.3
Q ss_pred HHHHHhHHhhcccchHHHHh
Q 030572 86 IIVGTLGCVYAPQISKALAG 105 (175)
Q Consensus 86 aVGGvlGlL~APR~~kel~~ 105 (175)
++||.+|.++..-.-+.+..
T Consensus 39 V~Ggt~~a~~i~~~~~~~~~ 58 (257)
T PRK08456 39 VVPTALFAAMTATHKKYVKA 58 (257)
T ss_pred HHHHHHHHHHHhCCHHHHHH
Confidence 56666666666544444443
No 100
>PRK11638 lipopolysaccharide biosynthesis protein WzzE; Provisional
Probab=35.93 E-value=22 Score=32.21 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=12.4
Q ss_pred chhhhHHHHHHHHHHHhHHhhc
Q 030572 75 GFFVGGFVLGGIIVGTLGCVYA 96 (175)
Q Consensus 75 ggFl~G~llGGaVGGvlGlL~A 96 (175)
..|| +++|+++|+++||.++
T Consensus 316 r~lI--lil~~llG~~lg~~~v 335 (342)
T PRK11638 316 RAFL--MIMWGAVGALVGAGVA 335 (342)
T ss_pred hhHH--HHHHHHHHHHHHheee
Confidence 3444 5677777777777443
No 101
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=35.70 E-value=35 Score=22.49 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHhHHhhcc
Q 030572 77 FVGGFVLGGIIVGTLGCVYAP 97 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGlL~AP 97 (175)
++.|.++|-+--+++|+.+|-
T Consensus 5 lL~GiVLGlipvTl~GlfvaA 25 (37)
T CHL00008 5 LLFGIVLGLIPITLAGLFVTA 25 (37)
T ss_pred hhhhHHHHhHHHHHHHHHHHH
Confidence 678999999999999998874
No 102
>COG3133 SlyB Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=35.64 E-value=7.9 Score=32.22 Aligned_cols=40 Identities=33% Similarity=0.520 Sum_probs=21.8
Q ss_pred CCcceEEeecCCCCCCCccchhhhHHHHHHHHHHHhHHhhcc
Q 030572 56 RRPFKVHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAP 97 (175)
Q Consensus 56 ~~~~~v~a~~~~~~~~Gf~ggFl~G~llGGaVGGvlGlL~AP 97 (175)
-|++.|++. +...=+.++|+-|+|| +|.+|||=-|-.+|.
T Consensus 49 vRpV~Iq~d-~q~vvG~igG~~lGG~-~g~~iGgG~G~~~At 88 (154)
T COG3133 49 VRPVKIQGD-DQNVIGAIGGAVLGGF-LGNTIGGGTGRSLAT 88 (154)
T ss_pred eeeeEEecC-CCccceeeccccccce-eeccccCCcchHHHH
Confidence 578888743 2122335666667666 565555544444433
No 103
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=35.02 E-value=29 Score=31.62 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=20.0
Q ss_pred CCccchhhhHHHHHHHHHHHhHHhhcccch
Q 030572 71 ANSAGFFVGGFVLGGIIVGTLGCVYAPQIS 100 (175)
Q Consensus 71 ~Gf~ggFl~G~llGGaVGGvlGlL~APR~~ 100 (175)
.+...||+.|+..|+ ++||++..|..
T Consensus 248 ~~wgPGFWTGla~Gg----~aGYl~G~r~~ 273 (318)
T PF06682_consen 248 QNWGPGFWTGLAAGG----AAGYLFGRRRN 273 (318)
T ss_pred CCCCCCchHHHHHHH----HHHhhhccCCc
Confidence 455679999887766 78888888776
No 104
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=34.99 E-value=19 Score=30.71 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=9.7
Q ss_pred cchhhhHHHHHHHHHHHh
Q 030572 74 AGFFVGGFVLGGIIVGTL 91 (175)
Q Consensus 74 ~ggFl~G~llGGaVGGvl 91 (175)
++.||+=+++=++-||++
T Consensus 69 gadlLgE~~iF~vggg~l 86 (181)
T KOG3335|consen 69 GADLLGELFIFSVGGGVL 86 (181)
T ss_pred HHHHHhhHHheeecceee
Confidence 456777666544444443
No 105
>COG3134 Predicted outer membrane lipoprotein [Function unknown]
Probab=34.71 E-value=19 Score=30.45 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHHhHHhhcccchHHHHh
Q 030572 77 FVGGFVLGGIIVGTLGCVYAPQISKALAG 105 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGlL~APR~~kel~~ 105 (175)
=|+|.++|.++||++|--|.--.+|....
T Consensus 70 ~iaGt~iGAv~GGl~G~Q~GgG~Gk~~aT 98 (179)
T COG3134 70 RIAGSVLGAVAGGVIGHQFGGGRGKDVAT 98 (179)
T ss_pred cchhhhhHHHhhhhccccccCCCcchhhh
Confidence 37888899999999988888777777654
No 106
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.68 E-value=1.3e+02 Score=22.24 Aligned_cols=60 Identities=18% Similarity=0.030 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHhHHhhcccchHHHHhhhhhhHHHHhhCCCcchhHH--HHHHHHHHhHHHHHHHHHHHHH
Q 030572 78 VGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDEE--KALEKTRKILTEKIAQLNSAID 147 (175)
Q Consensus 78 l~G~llGGaVGGvlGlL~APR~~kel~~~l~d~k~~~~~~p~~~~dee--~~iE~arr~Le~kIaqLN~AId 147 (175)
|.+.++.=++|-++|+.+|-|.=+. -.++-|+..++.= -.+...++=.|.||.|.=.+|.
T Consensus 7 il~ivl~ll~G~~~G~fiark~~~k----------~lk~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 7 ILLIVLALLAGLIGGFFIARKQMKK----------QLKDNPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 3455555566666778877554332 2334578877753 3456677778888888765553
No 107
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=34.55 E-value=2.2e+02 Score=24.40 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=19.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Q 030572 126 KALEKTRKILTEKIAQLNSAIDDVSAQLR 154 (175)
Q Consensus 126 ~~iE~arr~Le~kIaqLN~AIddvr~QL~ 154 (175)
...+..+..|+..+.+++..+++..+.+.
T Consensus 138 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 166 (301)
T PF14362_consen 138 ARLDAEIAALQAEIDQLEKEIDRAQQEAQ 166 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777777777777555444
No 108
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=34.38 E-value=2.4e+02 Score=25.89 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=26.0
Q ss_pred CccchhhhHHHHHHHHHHHhHHhhcccchHH
Q 030572 72 NSAGFFVGGFVLGGIIVGTLGCVYAPQISKA 102 (175)
Q Consensus 72 Gf~ggFl~G~llGGaVGGvlGlL~APR~~ke 102 (175)
.++-.|+--+++|.+|+.+..+++=|+.++.
T Consensus 189 ~l~~~ll~P~~ig~ai~~~vslliFP~sss~ 219 (459)
T PF10337_consen 189 TLGKTLLKPFLIGIAIALVVSLLIFPESSSH 219 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeecCCCchH
Confidence 3455778889999999999999999998863
No 109
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=34.07 E-value=1.9e+02 Score=23.17 Aligned_cols=29 Identities=3% Similarity=-0.065 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHHhHHhhcccchHHHHh
Q 030572 77 FVGGFVLGGIIVGTLGCVYAPQISKALAG 105 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGlL~APR~~kel~~ 105 (175)
|+.=++.=.++..+|..++-|.+.+-+.+
T Consensus 21 ~~~~iInFliL~~lL~~~l~~pi~~~l~~ 49 (173)
T PRK13453 21 VIVTVLTFIVLLALLKKFAWGPLKDVMDK 49 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333455666767766777666533
No 110
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=33.79 E-value=2.3e+02 Score=22.13 Aligned_cols=31 Identities=10% Similarity=0.074 Sum_probs=19.9
Q ss_pred chhhhHHHHHHHHHHHhHHhhcccchHHHHh
Q 030572 75 GFFVGGFVLGGIIVGTLGCVYAPQISKALAG 105 (175)
Q Consensus 75 ggFl~G~llGGaVGGvlGlL~APR~~kel~~ 105 (175)
+-|+.-++-=.++..+|.+++-|.+.+-+.+
T Consensus 6 ~~~~~~~inF~il~~iL~~f~~kpi~~~l~~ 36 (159)
T PRK13461 6 PTIIATIINFIILLLILKHFFFDKIKAVIDS 36 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455555555666777777777777766633
No 111
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=33.46 E-value=2.1e+02 Score=21.66 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=24.3
Q ss_pred HHHHHHHHhHHHHHHHHHH---HHHH-HHHhhccc
Q 030572 126 KALEKTRKILTEKIAQLNS---AIDD-VSAQLRTE 156 (175)
Q Consensus 126 ~~iE~arr~Le~kIaqLN~---AIdd-vr~QL~~~ 156 (175)
..++..++.|.+.|.+|+. +|++ +|.+|.=+
T Consensus 44 ~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~v 78 (105)
T PRK00888 44 AKLKARNDQLFAEIDDLKGGQEAIEERARNELGMV 78 (105)
T ss_pred HHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCC
Confidence 3567788889999999976 6666 88888766
No 112
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=33.29 E-value=19 Score=30.25 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHhHHhhcccc
Q 030572 78 VGGFVLGGIIVGTLGCVYAPQI 99 (175)
Q Consensus 78 l~G~llGGaVGGvlGlL~APR~ 99 (175)
+.|+.-|++.||++|.|+..+.
T Consensus 3 l~~~~~G~l~ggl~g~LlG~k~ 24 (188)
T PF04391_consen 3 LGGLGGGALAGGLLGMLLGGKK 24 (188)
T ss_pred ccccccchHHHHHHHHHhCCCC
Confidence 4444445555666777776654
No 113
>PRK14011 prefoldin subunit alpha; Provisional
Probab=33.22 E-value=76 Score=25.67 Aligned_cols=27 Identities=37% Similarity=0.508 Sum_probs=20.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 030572 127 ALEKTRKILTEKIAQLNSAIDDVSAQL 153 (175)
Q Consensus 127 ~iE~arr~Le~kIaqLN~AIddvr~QL 153 (175)
.+++..+.+.+.|++++..+++++..|
T Consensus 99 ~l~~~~~~l~~~i~~~~~~~~~l~~~L 125 (144)
T PRK14011 99 ELDKTKKEGNKKIEELNKEITKLRKEL 125 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777778888888888888776444
No 114
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=33.16 E-value=29 Score=32.00 Aligned_cols=28 Identities=32% Similarity=0.577 Sum_probs=21.2
Q ss_pred cCCCCCCCccchhhhHHH--------HHHHHHHHhH
Q 030572 65 NSEGGRANSAGFFVGGFV--------LGGIIVGTLG 92 (175)
Q Consensus 65 ~~~~~~~Gf~ggFl~G~l--------lGGaVGGvlG 92 (175)
|+=.+|.|.+-||++|++ +|++|+|.+.
T Consensus 78 ~SIa~kpglapg~i~G~~a~~~~~GFlGaii~G~la 113 (359)
T PRK10478 78 YSIADRSALAPCAIGAWVGNSFGAGFFGALIAGIIG 113 (359)
T ss_pred HHHcCCccccHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 565668899889998887 7777777653
No 115
>CHL00114 psbX photosystem II protein X; Reviewed
Probab=32.79 E-value=21 Score=23.68 Aligned_cols=27 Identities=33% Similarity=0.602 Sum_probs=19.1
Q ss_pred chhhhHHHHHHHHHH---HhHHhhcccchH
Q 030572 75 GFFVGGFVLGGIIVG---TLGCVYAPQISK 101 (175)
Q Consensus 75 ggFl~G~llGGaVGG---vlGlL~APR~~k 101 (175)
..|+..++.|++|-. .++++|-+|..+
T Consensus 6 snF~~SL~~Ga~ivvipi~~aLifvSq~D~ 35 (39)
T CHL00114 6 SAFINSLLLGAIIVVIPITLALLFVSQKDR 35 (39)
T ss_pred HHHHHHHHHHHHHhHHHhhhheEEEeccce
Confidence 468888888887755 446777776654
No 116
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=32.43 E-value=64 Score=25.71 Aligned_cols=78 Identities=23% Similarity=0.272 Sum_probs=47.0
Q ss_pred HHHHhHHhhcccchHHHHh-hh--hhhHHHHhhCCCcchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 030572 87 IVGTLGCVYAPQISKALAG-AA--ADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLRTEDDDAPNG 163 (175)
Q Consensus 87 VGGvlGlL~APR~~kel~~-~l--~d~k~~~~~~p~~~~dee~~iE~arr~Le~kIaqLN~AIddvr~QL~~~~~~~~n~ 163 (175)
|+..+.-|+-||.-+.-.. .. +.+.-+.+++.+... ..|....+-.+-|+++|+.++++..-+... +.-||
T Consensus 10 v~~~~~~L~~PR~~~~~lpEFat~~Ar~yf~~kKe~~~g----~F~~~l~~t~~~i~~l~~~L~~Le~ll~~~--~~~n~ 83 (132)
T PF04399_consen 10 VSPYLNKLLYPRWAQAPLPEFATPSARAYFREKKEKSIG----SFEELLAKTPELIAELNADLEELEPLLASP--NAVNG 83 (132)
T ss_dssp HHCCCHHHHHHHHCCTT-GGG-SHHHHHHHHCCCCCCHT----HHHHHHHCHHHHHHHHHHHHHHHHHH-SCT--TBTTS
T ss_pred HHHHHhhhhhccccCCCCcccCCHHHHHHHHHhhccccC----CHHHHHHcCHHHHHHHHHHHHHHHHHhccc--cccCC
Confidence 5666777888887654322 00 111225555555444 366677777889999999999999888866 45555
Q ss_pred cccCCccc
Q 030572 164 VAVNSGEV 171 (175)
Q Consensus 164 ~~~~~~e~ 171 (175)
.++-|+|
T Consensus 84 -~LS~dDi 90 (132)
T PF04399_consen 84 -ELSIDDI 90 (132)
T ss_dssp -S--HHHH
T ss_pred -CCCHHHH
Confidence 6665544
No 117
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=32.23 E-value=43 Score=22.04 Aligned_cols=21 Identities=38% Similarity=0.430 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHHHhHHhhcc
Q 030572 77 FVGGFVLGGIIVGTLGCVYAP 97 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGlL~AP 97 (175)
++.|.++|-+--+++|+.+|-
T Consensus 5 lL~GiVLGlipiTl~GlfvaA 25 (37)
T PRK00665 5 LLCGIVLGLIPVTLAGLFVAA 25 (37)
T ss_pred hhhhHHHHhHHHHHHHHHHHH
Confidence 678999999999999998874
No 118
>PRK04325 hypothetical protein; Provisional
Probab=32.07 E-value=1.1e+02 Score=22.03 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=9.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 030572 128 LEKTRKILTEKIAQLNSAIDD 148 (175)
Q Consensus 128 iE~arr~Le~kIaqLN~AIdd 148 (175)
+|.----.|++|++||.+|.+
T Consensus 14 LE~klAfQE~tIe~LN~vv~~ 34 (74)
T PRK04325 14 LEIQLAFQEDLIDGLNATVAR 34 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333445555555555543
No 119
>PF05128 DUF697: Domain of unknown function (DUF697) ; InterPro: IPR021147 Proteins in this entry have no known function.
Probab=31.88 E-value=79 Score=24.96 Aligned_cols=32 Identities=22% Similarity=0.094 Sum_probs=25.4
Q ss_pred hhhhHHHHHHHHHHHhHHhhcccchHHHHhhh
Q 030572 76 FFVGGFVLGGIIVGTLGCVYAPQISKALAGAA 107 (175)
Q Consensus 76 gFl~G~llGGaVGGvlGlL~APR~~kel~~~l 107 (175)
..+.|.++|+++-|++...+.-++|+.+.+.+
T Consensus 104 ~~~~~~~~g~~~qa~~a~~~T~~iG~~~~~~~ 135 (162)
T PF05128_consen 104 SSLAGTVSGAAIQAASAGALTYAIGKAAIEYF 135 (162)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888889998886654
No 120
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=31.81 E-value=16 Score=31.66 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=6.0
Q ss_pred HHHHHHhHHHHHH
Q 030572 128 LEKTRKILTEKIA 140 (175)
Q Consensus 128 iE~arr~Le~kIa 140 (175)
+|+|+-.||++|+
T Consensus 196 ~eeA~P~Le~~la 208 (215)
T PF05818_consen 196 FEEAQPVLEDQLA 208 (215)
T ss_pred hhhccHHHHHHHH
Confidence 4444444444443
No 121
>PRK13452 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=31.78 E-value=95 Score=24.84 Aligned_cols=43 Identities=23% Similarity=0.446 Sum_probs=25.9
Q ss_pred HHHHHHHHHhHHH------HHHHHHHHHHHHHHhhcccCCCCCCCcccCCc
Q 030572 125 EKALEKTRKILTE------KIAQLNSAIDDVSAQLRTEDDDAPNGVAVNSG 169 (175)
Q Consensus 125 e~~iE~arr~Le~------kIaqLN~AIddvr~QL~~~~~~~~n~~~~~~~ 169 (175)
++.++.|++.|++ .+.+.+.++..+..||.-. ...||--++.|
T Consensus 96 e~a~~~Ae~~L~~~~~~~~~~~~a~~~L~rA~~Rl~~~--~~~~~~~~~~~ 144 (145)
T PRK13452 96 EKARARAKEVLKNPDASKLDIEAANKRLKEADARLKAL--NSSNGLYYSKD 144 (145)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH--hhcCCceecCC
Confidence 3445555555543 3556677777777777766 56677666544
No 122
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=31.74 E-value=62 Score=27.38 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=20.5
Q ss_pred HHHHHHHHhHHhhcccchHHHHhhh
Q 030572 83 LGGIIVGTLGCVYAPQISKALAGAA 107 (175)
Q Consensus 83 lGGaVGGvlGlL~APR~~kel~~~l 107 (175)
++.+.+|.+|+|+.|-++..+..+.
T Consensus 82 ~~t~a~g~lG~L~GP~~G~~vf~l~ 106 (173)
T PF08566_consen 82 LATLACGALGWLVGPSLGNQVFRLL 106 (173)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHH
Confidence 4567788999999999998887765
No 123
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=31.53 E-value=2.5e+02 Score=21.93 Aligned_cols=31 Identities=16% Similarity=-0.033 Sum_probs=18.0
Q ss_pred CccchhhhHHHHHHHHHHHhHHhhcccchHHH
Q 030572 72 NSAGFFVGGFVLGGIIVGTLGCVYAPQISKAL 103 (175)
Q Consensus 72 Gf~ggFl~G~llGGaVGGvlGlL~APR~~kel 103 (175)
=|--+||.|+.-|.+||++-.+ +..++.++.
T Consensus 39 CfR~slL~Gi~~G~~vG~~~fl-~~~~~~~A~ 69 (118)
T PF12597_consen 39 CFRDSLLYGIAGGFGVGGLRFL-FTSNPRKAA 69 (118)
T ss_pred cHHHHHHHHHHHHHHHHhhhhc-ccCCCccch
Confidence 3445678887777666665544 443444443
No 124
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=31.02 E-value=1e+02 Score=26.04 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=19.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHh
Q 030572 128 LEKTRKILTEKIAQLNSAIDDVSAQ 152 (175)
Q Consensus 128 iE~arr~Le~kIaqLN~AIddvr~Q 152 (175)
.+..++.|+.++.+|++.|.++.++
T Consensus 151 a~~~~~e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 151 AKKKREELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456778899999999999887654
No 125
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=30.58 E-value=44 Score=25.90 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=12.3
Q ss_pred CccchhhhHHHHHHHHHHHhHHh
Q 030572 72 NSAGFFVGGFVLGGIIVGTLGCV 94 (175)
Q Consensus 72 Gf~ggFl~G~llGGaVGGvlGlL 94 (175)
|+-..++-||++|-++.+++.++
T Consensus 74 G~~tn~fyGf~igL~i~~lva~~ 96 (97)
T PF05440_consen 74 GIFTNMFYGFIIGLVIAGLVALI 96 (97)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHh
Confidence 33344555666666665555543
No 126
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.35 E-value=41 Score=30.44 Aligned_cols=11 Identities=18% Similarity=0.301 Sum_probs=4.9
Q ss_pred CCccchhhhHH
Q 030572 71 ANSAGFFVGGF 81 (175)
Q Consensus 71 ~Gf~ggFl~G~ 81 (175)
+||-|||++|+
T Consensus 26 p~~~~~~~g~l 36 (281)
T COG4395 26 PSFFSGMLGGL 36 (281)
T ss_pred cchhhhhhhHH
Confidence 34444444443
No 127
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=30.14 E-value=38 Score=25.99 Aligned_cols=28 Identities=4% Similarity=-0.103 Sum_probs=21.1
Q ss_pred chhhhHHHHHHHHHHHhHHhhcccchHH
Q 030572 75 GFFVGGFVLGGIIVGTLGCVYAPQISKA 102 (175)
Q Consensus 75 ggFl~G~llGGaVGGvlGlL~APR~~ke 102 (175)
+.|++.+|+.-+|.-+++++++-|+.|.
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4678888888888888888877766654
No 128
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=30.04 E-value=1.9e+02 Score=26.26 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=17.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhccc
Q 030572 130 KTRKILTEKIAQLNSAIDDVSAQLRTE 156 (175)
Q Consensus 130 ~arr~Le~kIaqLN~AIddvr~QL~~~ 156 (175)
..-++++.+++++.+.+++.++|+...
T Consensus 93 ~~~~~l~~~l~~~~~~l~~l~~~~~~l 119 (372)
T PF04375_consen 93 EQLQQLQQELAQLQQQLAELQQQLAAL 119 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556667777777777777777665
No 129
>PRK00295 hypothetical protein; Provisional
Probab=29.95 E-value=1.3e+02 Score=21.34 Aligned_cols=8 Identities=0% Similarity=-0.089 Sum_probs=3.5
Q ss_pred HHHhhccc
Q 030572 149 VSAQLRTE 156 (175)
Q Consensus 149 vr~QL~~~ 156 (175)
...|++..
T Consensus 45 L~~rl~~~ 52 (68)
T PRK00295 45 LIKRQEEM 52 (68)
T ss_pred HHHHHHHh
Confidence 34444444
No 130
>PRK12509 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=29.92 E-value=44 Score=26.83 Aligned_cols=17 Identities=29% Similarity=0.620 Sum_probs=13.2
Q ss_pred CCccchhhhHHHHHHHH
Q 030572 71 ANSAGFFVGGFVLGGII 87 (175)
Q Consensus 71 ~Gf~ggFl~G~llGGaV 87 (175)
+.-+|||.+|.+++.++
T Consensus 30 ~~PGGGF~gGli~a~a~ 46 (137)
T PRK12509 30 NEPGGGFIGGLVAAAAF 46 (137)
T ss_pred CCCCccHHHHHHHHHHH
Confidence 44469999999988765
No 131
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=29.85 E-value=23 Score=28.66 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=11.7
Q ss_pred cchhhhHHHHHHHHHHHhHHh
Q 030572 74 AGFFVGGFVLGGIIVGTLGCV 94 (175)
Q Consensus 74 ~ggFl~G~llGGaVGGvlGlL 94 (175)
.++|+.+.+|||+..-+|+.+
T Consensus 81 p~d~aLp~VIGGLcaL~Laam 101 (126)
T PF03229_consen 81 PVDFALPLVIGGLCALTLAAM 101 (126)
T ss_pred CcccchhhhhhHHHHHHHHHH
Confidence 455666666666555444443
No 132
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=29.76 E-value=1.5e+02 Score=26.21 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=17.3
Q ss_pred HHHHHhHHhhcccchHHHHhhh
Q 030572 86 IIVGTLGCVYAPQISKALAGAA 107 (175)
Q Consensus 86 aVGGvlGlL~APR~~kel~~~l 107 (175)
++||.+|.++..-.-+.+....
T Consensus 37 V~Ggtlga~lis~p~~~~~~~~ 58 (282)
T TIGR03818 37 IGGAAIGAFIIANPPKVLKETL 58 (282)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 6788999988887777776654
No 133
>PRK08387 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=29.65 E-value=44 Score=26.58 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=12.5
Q ss_pred CCccchhhhHHHHHHHH
Q 030572 71 ANSAGFFVGGFVLGGII 87 (175)
Q Consensus 71 ~Gf~ggFl~G~llGGaV 87 (175)
+.-+|||.+|.+++.++
T Consensus 29 ~~PGGGF~gGli~a~a~ 45 (131)
T PRK08387 29 LSPGGGFQAGVILAVAV 45 (131)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 34469999998877654
No 134
>PRK10337 sensor protein QseC; Provisional
Probab=29.60 E-value=2.9e+02 Score=23.92 Aligned_cols=30 Identities=10% Similarity=-0.148 Sum_probs=18.1
Q ss_pred hhhhHHHHHHHHHHHhHHhhcccchHHHHh
Q 030572 76 FFVGGFVLGGIIVGTLGCVYAPQISKALAG 105 (175)
Q Consensus 76 gFl~G~llGGaVGGvlGlL~APR~~kel~~ 105 (175)
..+.+++++.++..++++++.-++-+-+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 191 (449)
T PRK10337 162 GQLIPWLVALPIMLIILMVLLGRELAPLKK 191 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 344555666666666677766665555544
No 135
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=29.45 E-value=2.9e+02 Score=22.01 Aligned_cols=31 Identities=29% Similarity=0.102 Sum_probs=18.8
Q ss_pred chhhhHHHHHHHHHHHhHHhhcccchHHHHh
Q 030572 75 GFFVGGFVLGGIIVGTLGCVYAPQISKALAG 105 (175)
Q Consensus 75 ggFl~G~llGGaVGGvlGlL~APR~~kel~~ 105 (175)
|-|+.-++.=.++.++|.+++-|.+.+-+.+
T Consensus 17 ~~~~~~~i~Flil~~iL~~~~~kpi~~~l~~ 47 (173)
T PRK13460 17 GLVVWTLVTFLVVVLVLKKFAWDVILKALDE 47 (173)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3454444444556667777777777766643
No 136
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=29.03 E-value=1.2e+02 Score=22.25 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=12.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhc
Q 030572 128 LEKTRKILTEKIAQLNSAIDDVSAQLR 154 (175)
Q Consensus 128 iE~arr~Le~kIaqLN~AIddvr~QL~ 154 (175)
++.....|++.+..++..++.+..++.
T Consensus 99 l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 99 LEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 137
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=29.00 E-value=2e+02 Score=23.91 Aligned_cols=66 Identities=18% Similarity=0.195 Sum_probs=39.9
Q ss_pred CCCccchhhhHHHHHHHHHHHhHHhhcccchHHHHhhhhhhHHHHhhC-CCcch-hHHHHHHHHHHhHHHH
Q 030572 70 RANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKL-PKFIY-DEEKALEKTRKILTEK 138 (175)
Q Consensus 70 ~~Gf~ggFl~G~llGGaVGGvlGlL~APR~~kel~~~l~d~k~~~~~~-p~~~~-dee~~iE~arr~Le~k 138 (175)
+.|++|.-+.++++|..+-|+--+....+..+.+.. || ...+..+ |-+.. .+.+-+..-|+|+|+.
T Consensus 30 k~~~Sg~t~~aa~~gatayG~~~~~~~~kk~rr~ki--Ed-~~a~nai~PiL~AErDr~~l~~lrkn~eeE 97 (146)
T KOG3300|consen 30 KTGPSGMTMFAAVSGATAYGMYQVGQGNKKRRRLKI--ED-YAARNAILPILQAERDRRFLSELRKNLEEE 97 (146)
T ss_pred ccCCCcchhhhHHHHHHHHHHHHHHhchhHHHHHHH--HH-HHHHHHHhhHHHHHHHHHHHHHHHHhHHHH
Confidence 457778778888888887777777766666655533 32 2233343 43333 3445666667776654
No 138
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=28.89 E-value=44 Score=24.52 Aligned_cols=15 Identities=40% Similarity=0.707 Sum_probs=12.4
Q ss_pred HHHHHHHHHhHHhhc
Q 030572 82 VLGGIIVGTLGCVYA 96 (175)
Q Consensus 82 llGGaVGGvlGlL~A 96 (175)
++||++++++++|.-
T Consensus 38 vi~gi~~~~lt~ltN 52 (68)
T PF04971_consen 38 VIGGIFFGLLTYLTN 52 (68)
T ss_pred HHHHHHHHHHHHHhH
Confidence 788899999998863
No 139
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=28.49 E-value=47 Score=26.01 Aligned_cols=20 Identities=25% Similarity=0.552 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHhHHhhc
Q 030572 77 FVGGFVLGGIIVGTLGCVYA 96 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGlL~A 96 (175)
.+.|+.||++|.|+-+|-|-
T Consensus 52 ~~Tgl~L~~~v~gIY~YTi~ 71 (100)
T PF09813_consen 52 LLTGLALGAFVVGIYAYTIY 71 (100)
T ss_pred HHHHHHHHHHHHHHHhheee
Confidence 68899999999999888654
No 140
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=28.25 E-value=1.5e+02 Score=20.76 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 030572 135 LTEKIAQLNSAIDDVSAQLRTE 156 (175)
Q Consensus 135 Le~kIaqLN~AIddvr~QL~~~ 156 (175)
-...|.+|...+..++.+++..
T Consensus 30 Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 30 QQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555667777766
No 141
>PRK02119 hypothetical protein; Provisional
Probab=28.19 E-value=1.2e+02 Score=21.81 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 030572 135 LTEKIAQLNSAI 146 (175)
Q Consensus 135 Le~kIaqLN~AI 146 (175)
.|++|++||.+|
T Consensus 21 QE~tie~LN~~v 32 (73)
T PRK02119 21 QENLLEELNQAL 32 (73)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 142
>PRK15361 pathogenicity island 2 effector protein SseD; Provisional
Probab=28.09 E-value=92 Score=27.00 Aligned_cols=22 Identities=27% Similarity=0.656 Sum_probs=12.2
Q ss_pred cchhhhHHH-HH-HHHHHHhHHhh
Q 030572 74 AGFFVGGFV-LG-GIIVGTLGCVY 95 (175)
Q Consensus 74 ~ggFl~G~l-lG-GaVGGvlGlL~ 95 (175)
.+..++|++ +| |+|||..|.-|
T Consensus 94 v~~IlsGV~t~g~G~vGg~ag~~~ 117 (195)
T PRK15361 94 GGAMLSGVLTIGLGAVGGETGLIA 117 (195)
T ss_pred HHHHHHhHHHhcccccchHHHHHh
Confidence 456666665 32 55566555544
No 143
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=28.08 E-value=2.7e+02 Score=26.55 Aligned_cols=61 Identities=21% Similarity=0.276 Sum_probs=37.5
Q ss_pred hhhhHHHHHHHHHHHhHHhhcccchHHHHhhhhhhHHHHhhCC-----------CcchhHHHHHHHHHHhHHH
Q 030572 76 FFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLP-----------KFIYDEEKALEKTRKILTE 137 (175)
Q Consensus 76 gFl~G~llGGaVGGvlGlL~APR~~kel~~~l~d~k~~~~~~p-----------~~~~dee~~iE~arr~Le~ 137 (175)
.|+.|+++=.+|+-++|+++=-|..+....+ +++|.-...+| .+..+.....+.-++.|++
T Consensus 4 ~~ii~i~ii~i~~~~~~~~~rr~~~~~i~~L-e~~k~~l~~~pv~~el~kvk~l~l~Ges~~~f~~w~~~~~~ 75 (569)
T PRK04778 4 YLIIAIVVIIIIAYLAGLILRKRNYKRIDEL-EERKQELENLPVNDELEKVKKLNLTGQSEEKFEEWRQKWDE 75 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCHHHHHHHHhcCCCCcccHHHHHHHHHHHHH
Confidence 3566666666666667777777777776554 44443333333 4445566677777777776
No 144
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=28.02 E-value=67 Score=21.15 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHhHHhhcc
Q 030572 77 FVGGFVLGGIIVGTLGCVYAP 97 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGlL~AP 97 (175)
++.|.++|-+--.++|+.++.
T Consensus 5 lL~GiVlGli~vtl~Glfv~A 25 (37)
T PF02529_consen 5 LLSGIVLGLIPVTLAGLFVAA 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHhHHHHHHHHHHHH
Confidence 578999999999999988874
No 145
>PRK12508 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=27.90 E-value=49 Score=26.53 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=12.8
Q ss_pred CCccchhhhHHHHHHHH
Q 030572 71 ANSAGFFVGGFVLGGII 87 (175)
Q Consensus 71 ~Gf~ggFl~G~llGGaV 87 (175)
+.=+|||.+|+++++++
T Consensus 31 ~~PGGGFqgG~i~a~a~ 47 (139)
T PRK12508 31 YGPGGGFQAGVIVASAI 47 (139)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 34469999999987653
No 146
>PRK12574 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=27.82 E-value=48 Score=26.64 Aligned_cols=17 Identities=29% Similarity=0.729 Sum_probs=13.0
Q ss_pred CCccchhhhHHHHHHHH
Q 030572 71 ANSAGFFVGGFVLGGII 87 (175)
Q Consensus 71 ~Gf~ggFl~G~llGGaV 87 (175)
+.-+|||.+|.+++.++
T Consensus 32 ~~PGGGF~gGli~a~a~ 48 (141)
T PRK12574 32 NNPGGGFIGGLIFSSAF 48 (141)
T ss_pred CCCCccHHHHHHHHHHH
Confidence 44469999999987764
No 147
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=27.78 E-value=1.1e+02 Score=22.09 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 030572 123 DEEKALEKTRKILTEKIAQLNSAIDDV 149 (175)
Q Consensus 123 dee~~iE~arr~Le~kIaqLN~AIddv 149 (175)
.||..+..-|+.+.++++.|++|.+..
T Consensus 63 ~Ed~~i~~kR~~l~~~~~~L~~A~~~L 89 (92)
T PF02212_consen 63 QEDPEIAEKREELKKKLERLKKAQQIL 89 (92)
T ss_dssp --GHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678899999999999999998754
No 148
>PRK12573 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=27.66 E-value=50 Score=26.53 Aligned_cols=17 Identities=24% Similarity=0.645 Sum_probs=13.0
Q ss_pred CCccchhhhHHHHHHHH
Q 030572 71 ANSAGFFVGGFVLGGII 87 (175)
Q Consensus 71 ~Gf~ggFl~G~llGGaV 87 (175)
+.-+|||.+|.+++.++
T Consensus 32 ~~PGGGF~gGli~a~a~ 48 (140)
T PRK12573 32 NEPGGGFIGGLITASAL 48 (140)
T ss_pred CCCCccHHHHHHHHHHH
Confidence 44469999999888765
No 149
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=27.59 E-value=3e+02 Score=26.35 Aligned_cols=28 Identities=7% Similarity=-0.005 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHhHHhhcccchHHHHhh
Q 030572 79 GGFVLGGIIVGTLGCVYAPQISKALAGA 106 (175)
Q Consensus 79 ~G~llGGaVGGvlGlL~APR~~kel~~~ 106 (175)
.-++++.+++.+++++++-++.+-+..+
T Consensus 182 ~~~~~~l~~~~~~~~~~~r~i~~pl~~l 209 (919)
T PRK11107 182 LMLLLGIGLALLFAFRLMRDVTGPIRNM 209 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566677777777776666553
No 150
>PRK02793 phi X174 lysis protein; Provisional
Probab=27.58 E-value=1.2e+02 Score=21.60 Aligned_cols=8 Identities=13% Similarity=0.513 Sum_probs=4.0
Q ss_pred HHHhhccc
Q 030572 149 VSAQLRTE 156 (175)
Q Consensus 149 vr~QL~~~ 156 (175)
+..||+..
T Consensus 48 L~~rl~~~ 55 (72)
T PRK02793 48 LTEKLKAS 55 (72)
T ss_pred HHHHHHhh
Confidence 44455554
No 151
>COG3765 WzzB Chain length determinant protein [Cell envelope biogenesis, outer membrane]
Probab=27.55 E-value=41 Score=31.30 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHhhc
Q 030572 81 FVLGGIIVGTLGCVYA 96 (175)
Q Consensus 81 ~llGGaVGGvlGlL~A 96 (175)
+++|++|||++|+.++
T Consensus 320 lil~~LiGgm~g~g~v 335 (347)
T COG3765 320 LILGALIGGMLGAGVV 335 (347)
T ss_pred HHHHHHHHHHHHHHHH
No 152
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.28 E-value=1.8e+02 Score=25.97 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 030572 124 EEKALEKTRKILTEKIAQLNSAIDDVS 150 (175)
Q Consensus 124 ee~~iE~arr~Le~kIaqLN~AIddvr 150 (175)
+-+..++...+|..+|.+|+..+++++
T Consensus 58 e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 58 ELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666667777777777777766
No 153
>TIGR00943 2a6301s02 monovalent cation:proton antiporter. This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter.This family is specific for the phaB and mnhB proteins.
Probab=27.12 E-value=53 Score=25.26 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=12.9
Q ss_pred CCccchhhhHHHHHHHH
Q 030572 71 ANSAGFFVGGFVLGGII 87 (175)
Q Consensus 71 ~Gf~ggFl~G~llGGaV 87 (175)
+.-+|||.+|.+++.++
T Consensus 7 ~~PGGGF~gGli~a~a~ 23 (107)
T TIGR00943 7 NAPGGGFVAGLLTASSL 23 (107)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 34469999999988764
No 154
>PRK04406 hypothetical protein; Provisional
Probab=27.07 E-value=1.3e+02 Score=21.86 Aligned_cols=13 Identities=31% Similarity=0.509 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 030572 135 LTEKIAQLNSAID 147 (175)
Q Consensus 135 Le~kIaqLN~AId 147 (175)
.|++|++||.+|.
T Consensus 23 QE~tIe~LN~~v~ 35 (75)
T PRK04406 23 QEQTIEELNDALS 35 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 155
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=26.94 E-value=47 Score=29.02 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHHHhHHhhcccchHHHHh
Q 030572 76 FFVGGFVLGGIIVGTLGCVYAPQISKALAG 105 (175)
Q Consensus 76 gFl~G~llGGaVGGvlGlL~APR~~kel~~ 105 (175)
-.+.++++|+-++|++|.++||=+---+..
T Consensus 306 ~ilisll~g~~l~G~~G~ila~pl~~~~k~ 335 (355)
T COG0628 306 VILLSLLGGGSLFGFVGLILAPPLAAVLKV 335 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999976644433
No 156
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=26.90 E-value=65 Score=30.84 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=30.3
Q ss_pred CCccccCCCccceeeeeccCCCcceEEeecCCCC-CC-Cc-cchhhhHHHHHHHHHHHhHHhhcccch
Q 030572 36 PANLSFSPNHQWKVQLSSSRRRPFKVHASNSEGG-RA-NS-AGFFVGGFVLGGIIVGTLGCVYAPQIS 100 (175)
Q Consensus 36 ~~~l~~~~~~~~~~~~~~~~~~~~~v~a~~~~~~-~~-Gf-~ggFl~G~llGGaVGGvlGlL~APR~~ 100 (175)
|..|.|+..++..+.....-.-.+++++.+...= +| |- +-||++||+++- |-+.++|++.-|.+
T Consensus 26 PA~LTf~s~s~n~~~~~~~l~a~~t~~~~e~~~vlpNHGlhaagFfvaflvsl-VL~~l~~f~l~r~~ 92 (429)
T PF12297_consen 26 PAQLTFQSSSQNRTSNSTQLKALFTITVEEKISVLPNHGLHAAGFFVAFLVSL-VLTWLCFFLLARTR 92 (429)
T ss_pred cceeeeecchhhhhhcccchhhhheeeccccceeccCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHc
Confidence 4555555544433311111133566776655421 11 22 346777666654 44455566555443
No 157
>PRK12704 phosphodiesterase; Provisional
Probab=26.50 E-value=2.4e+02 Score=27.09 Aligned_cols=17 Identities=18% Similarity=0.094 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHhHHhh
Q 030572 79 GGFVLGGIIVGTLGCVY 95 (175)
Q Consensus 79 ~G~llGGaVGGvlGlL~ 95 (175)
.|+++|.++|-.+.--.
T Consensus 12 vg~~iG~~ig~~i~k~~ 28 (520)
T PRK12704 12 VALVVGAVIGYFVRKKI 28 (520)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555443333
No 158
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=26.31 E-value=97 Score=21.91 Aligned_cols=19 Identities=37% Similarity=0.552 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 030572 135 LTEKIAQLNSAIDDVSAQL 153 (175)
Q Consensus 135 Le~kIaqLN~AIddvr~QL 153 (175)
|+++|+.|.+-|+.+++.+
T Consensus 26 L~~RIa~L~aEI~R~~~~~ 44 (59)
T PF06698_consen 26 LEERIALLEAEIARLEAAI 44 (59)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444443
No 159
>PRK12505 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=26.17 E-value=54 Score=27.14 Aligned_cols=17 Identities=24% Similarity=0.661 Sum_probs=13.1
Q ss_pred CCccchhhhHHHHHHHH
Q 030572 71 ANSAGFFVGGFVLGGII 87 (175)
Q Consensus 71 ~Gf~ggFl~G~llGGaV 87 (175)
+.-+|||.+|++++.++
T Consensus 43 ~~PGGGFqgGlI~Aaa~ 59 (159)
T PRK12505 43 DSPGGGFQGGVIVASVV 59 (159)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 34469999999988764
No 160
>KOG4608 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.12 E-value=49 Score=29.81 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=14.5
Q ss_pred hhhhHHHHHHHHHHHhHHhhcccchHHH
Q 030572 76 FFVGGFVLGGIIVGTLGCVYAPQISKAL 103 (175)
Q Consensus 76 gFl~G~llGGaVGGvlGlL~APR~~kel 103 (175)
+-+.|.++|+.||++++++ +-.++|..
T Consensus 187 ~vilG~~lG~tv~~~l~l~-q~a~~k~v 213 (270)
T KOG4608|consen 187 GVILGALLGTTVGGLLMLF-QKASGKTV 213 (270)
T ss_pred cceeehhhcchHHHHHHHH-HHHhCCcH
Confidence 3445566666666666543 33445443
No 161
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=26.10 E-value=3.2e+02 Score=21.40 Aligned_cols=31 Identities=23% Similarity=0.087 Sum_probs=18.8
Q ss_pred chhhhHHHHHHHHHHHhHHhhcccchHHHHh
Q 030572 75 GFFVGGFVLGGIIVGTLGCVYAPQISKALAG 105 (175)
Q Consensus 75 ggFl~G~llGGaVGGvlGlL~APR~~kel~~ 105 (175)
|.|+.-++.=.++..+|..++-|.+.+-+.+
T Consensus 9 ~~~~~~~i~Flil~~ll~~~l~~pi~~~l~~ 39 (164)
T PRK14471 9 GLFFWQTILFLILLLLLAKFAWKPILGAVKE 39 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4454444444556666777777777776644
No 162
>KOG1519 consensus Predicted mitochondrial carrier protein [General function prediction only]
Probab=25.96 E-value=50 Score=29.51 Aligned_cols=22 Identities=32% Similarity=0.789 Sum_probs=17.2
Q ss_pred hhhhHHHHHHHHHHHhHHhhcc
Q 030572 76 FFVGGFVLGGIIVGTLGCVYAP 97 (175)
Q Consensus 76 gFl~G~llGGaVGGvlGlL~AP 97 (175)
-.+.-|+.||+.|+.+|++|-|
T Consensus 210 hLv~DFiAG~LLGA~l~~~FFP 231 (297)
T KOG1519|consen 210 HLVNDFIAGGLLGAMLGFLFFP 231 (297)
T ss_pred HHHHHHhhhhHHHHHHHHhhcc
Confidence 3556677788888889999988
No 163
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=25.95 E-value=2.2e+02 Score=25.00 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=15.4
Q ss_pred HHHHHhHHhhcccchHHHHhhh
Q 030572 86 IIVGTLGCVYAPQISKALAGAA 107 (175)
Q Consensus 86 aVGGvlGlL~APR~~kel~~~l 107 (175)
++||.+|.++..-..++.....
T Consensus 36 V~GGt~ga~li~~p~~~i~~~~ 57 (254)
T PRK06743 36 VIGGTTATIVVAYRFGEIKKYT 57 (254)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 4688888888777666665544
No 164
>PRK08386 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=25.89 E-value=55 Score=26.52 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=12.7
Q ss_pred CCccchhhhHHHHHHHH
Q 030572 71 ANSAGFFVGGFVLGGII 87 (175)
Q Consensus 71 ~Gf~ggFl~G~llGGaV 87 (175)
+.-+|||.+|+++++++
T Consensus 31 ~~PGGGF~gG~i~a~a~ 47 (151)
T PRK08386 31 LTPGGGFQGGATIAGGG 47 (151)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 34469999999887654
No 165
>PRK09609 hypothetical protein; Provisional
Probab=25.62 E-value=47 Score=30.45 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=0.0
Q ss_pred Cccc--hhhhHHHHHHHHHHHhHHh
Q 030572 72 NSAG--FFVGGFVLGGIIVGTLGCV 94 (175)
Q Consensus 72 Gf~g--gFl~G~llGGaVGGvlGlL 94 (175)
++++ -.++|+++|-++|+++|.+
T Consensus 41 sf~~IPviI~G~LFGPv~G~ivG~l 65 (312)
T PRK09609 41 SFIGLPIKITGFIFGPIVGFFTGLL 65 (312)
T ss_pred eHhhHHHHHHHHHhchHHHHHHHHH
No 166
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=25.61 E-value=3.5e+02 Score=21.77 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=16.8
Q ss_pred chhhhHHHHHHHHHHHhHHhhcccchHHH
Q 030572 75 GFFVGGFVLGGIIVGTLGCVYAPQISKAL 103 (175)
Q Consensus 75 ggFl~G~llGGaVGGvlGlL~APR~~kel 103 (175)
..|+.-++-=.++..+|.+++-.-+.+-+
T Consensus 25 ~~~~~~~Inflill~lL~~fl~kPI~~~l 53 (184)
T CHL00019 25 DILETNLINLSVVLGVLIYFGKGVLSDLL 53 (184)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 34444455555666777776666565555
No 167
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=25.61 E-value=3.5e+02 Score=21.63 Aligned_cols=24 Identities=25% Similarity=0.027 Sum_probs=16.5
Q ss_pred HHHHHHHHHhHHhhcccchHHHHh
Q 030572 82 VLGGIIVGTLGCVYAPQISKALAG 105 (175)
Q Consensus 82 llGGaVGGvlGlL~APR~~kel~~ 105 (175)
+.=.++-+++.+++.|.+.+.+.+
T Consensus 14 i~F~ill~ll~~~~~~pi~~~l~~ 37 (161)
T COG0711 14 IAFVILLWLLKKFVWKPILKALDE 37 (161)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333455567777888999888754
No 168
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=25.59 E-value=4.3e+02 Score=22.66 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhHHhhcccchHHHHhh
Q 030572 81 FVLGGIIVGTLGCVYAPQISKALAGA 106 (175)
Q Consensus 81 ~llGGaVGGvlGlL~APR~~kel~~~ 106 (175)
.++.+++..++++++.-++.+-+..+
T Consensus 159 ~~~~~l~~~~~~~~~~r~~~~pl~~l 184 (435)
T PRK09467 159 TLAIGLLSVAGGWLFIRIQNRPLVAL 184 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33444555566777777776666554
No 169
>PF15179 Myc_target_1: Myc target protein 1
Probab=25.49 E-value=60 Score=28.14 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=15.1
Q ss_pred hhhhHHHHHHHHHHHhHHhh
Q 030572 76 FFVGGFVLGGIIVGTLGCVY 95 (175)
Q Consensus 76 gFl~G~llGGaVGGvlGlL~ 95 (175)
..+.|+|+||+|..++-+|-
T Consensus 28 Sm~iGLviG~li~~LltwlS 47 (197)
T PF15179_consen 28 SMAIGLVIGALIWALLTWLS 47 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888887776
No 170
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=25.35 E-value=2.9e+02 Score=20.60 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=20.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Q 030572 127 ALEKTRKILTEKIAQLNSAIDDVSAQLRT 155 (175)
Q Consensus 127 ~iE~arr~Le~kIaqLN~AIddvr~QL~~ 155 (175)
.+|...+.+++++..|...+.+.+++++.
T Consensus 78 ~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 78 TLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777776654
No 171
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=25.21 E-value=85 Score=24.31 Aligned_cols=24 Identities=13% Similarity=-0.094 Sum_probs=16.3
Q ss_pred ccchhhhHHHHHHHHHHHhHHhhc
Q 030572 73 SAGFFVGGFVLGGIIVGTLGCVYA 96 (175)
Q Consensus 73 f~ggFl~G~llGGaVGGvlGlL~A 96 (175)
--+||+.++++|=+||-++-.++|
T Consensus 72 ~~AG~~tn~fyGf~igL~i~~l~~ 95 (96)
T PRK00965 72 YIAGIFTNMFYGFWIGLAILFLLA 95 (96)
T ss_pred eehhhhhHHHHHHHHHHHHHHHhh
Confidence 345677777777777777666665
No 172
>PF13441 Gly-zipper_YMGG: YMGG-like Gly-zipper
Probab=25.15 E-value=72 Score=21.54 Aligned_cols=17 Identities=18% Similarity=0.446 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhHHhhc
Q 030572 80 GFVLGGIIVGTLGCVYA 96 (175)
Q Consensus 80 G~llGGaVGGvlGlL~A 96 (175)
|+++|.+.|.++|.++-
T Consensus 6 GA~iGA~~GA~iG~~~g 22 (45)
T PF13441_consen 6 GAAIGAAAGAVIGAIIG 22 (45)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 44444444444444443
No 173
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=25.12 E-value=3.9e+02 Score=22.42 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=19.9
Q ss_pred hhhhHHHH-HHHHHHHhHHhhcccchHHHHhhhhhhH
Q 030572 76 FFVGGFVL-GGIIVGTLGCVYAPQISKALAGAAADRK 111 (175)
Q Consensus 76 gFl~G~ll-GGaVGGvlGlL~APR~~kel~~~l~d~k 111 (175)
.++.+-+| -.+.+++|-+|+.-=.=+-+.+++++|+
T Consensus 50 ~~~~~~l~w~~I~FliL~~lL~k~~~~pI~~vLe~R~ 86 (204)
T PRK09174 50 THYASQLLWLAITFGLFYLFMSRVILPRIGGIIETRR 86 (204)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 4455666666555545555677776553
No 174
>PF02605 PsaL: Photosystem I reaction centre subunit XI; InterPro: IPR003757 The trimeric photosystem I of the cyanobacterium Synechococcus elongatus recomprises 11 protein subunits. Subunit XI, PsaL, from plants and bacteria is one of the smaller subunits with only two transmembrane alpha helices. PsaL interacts closely with PsaI [].; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009538 photosystem I reaction center; PDB: 2WSC_L 2WSF_L 2WSE_L 2O01_L 1JB0_L 3PCQ_L.
Probab=24.95 E-value=22 Score=29.69 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=19.1
Q ss_pred cchhhhHHHHHHHHHHHhHHhhc
Q 030572 74 AGFFVGGFVLGGIIVGTLGCVYA 96 (175)
Q Consensus 74 ~ggFl~G~llGGaVGGvlGlL~A 96 (175)
.+-|-+||++||+=|.+.+|++-
T Consensus 124 Ws~F~~GF~iGg~GGa~fAy~Ll 146 (153)
T PF02605_consen 124 WSQFTSGFFIGGCGGAFFAYFLL 146 (153)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHCH
T ss_pred HHHhcccceeccccHHHHHHHHH
Confidence 56789999999998888888764
No 175
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=24.87 E-value=81 Score=30.50 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=21.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhc
Q 030572 128 LEKTRKILTEKIAQLNSAIDDVSAQLR 154 (175)
Q Consensus 128 iE~arr~Le~kIaqLN~AIddvr~QL~ 154 (175)
|...++.+++||+.|.+.|+..++|++
T Consensus 95 ~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 95 LNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 446677788888888888888888874
No 176
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=24.84 E-value=71 Score=21.04 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHhHHhhcc
Q 030572 78 VGGFVLGGIIVGTLGCVYAP 97 (175)
Q Consensus 78 l~G~llGGaVGGvlGlL~AP 97 (175)
+-.+++||+|+..++..+-|
T Consensus 11 lmN~ll~Gava~~a~~~lyP 30 (39)
T PF08802_consen 11 LMNLLLGGAVAVPAGGMLYP 30 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHhhh
Confidence 34566777776666655544
No 177
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=24.74 E-value=1.1e+02 Score=24.14 Aligned_cols=72 Identities=6% Similarity=0.053 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHhHHhhcccchHHHHhhhhhhHHHHhhCCCcchhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 030572 76 FFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSA 151 (175)
Q Consensus 76 gFl~G~llGGaVGGvlGlL~APR~~kel~~~l~d~k~~~~~~p~~~~dee~~iE~arr~Le~kIaqLN~AIddvr~ 151 (175)
.|+..+++|+..++++.|+++-=+=..-.. . .......++...+....-+.+-+++++++.++..-+.++..
T Consensus 34 ~~vl~~~~~~~~~~ll~Y~i~w~~lp~~p~--~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Rl~~mE~ 105 (121)
T TIGR02978 34 LVVSALLFGGGFFVLVAYIALWLLLDKKPI--N--LYEDDDVKSKPWQAGQSPRQALREVKREFRDLERRLRNMER 105 (121)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCcc--c--cccccccchhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
No 178
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.57 E-value=1.5e+02 Score=22.66 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=12.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhc
Q 030572 128 LEKTRKILTEKIAQLNSAIDDVSAQLR 154 (175)
Q Consensus 128 iE~arr~Le~kIaqLN~AIddvr~QL~ 154 (175)
++...+.|++.|+.++..++.+.+++.
T Consensus 106 l~~~~~~l~~~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 106 LEKALEKLEEALQKLASRIAQLAQELQ 132 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555544444443
No 179
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.46 E-value=4.1e+02 Score=21.98 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHhHHhhcccchH
Q 030572 78 VGGFVLGGIIVGTLGCVYAPQISK 101 (175)
Q Consensus 78 l~G~llGGaVGGvlGlL~APR~~k 101 (175)
+.|+|+|-+||.++.=|.-+....
T Consensus 12 ~igLvvGi~IG~li~Rlt~~~~k~ 35 (138)
T COG3105 12 LIGLVVGIIIGALIARLTNRKLKQ 35 (138)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhh
Confidence 578889888888888887776554
No 180
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=24.39 E-value=83 Score=24.41 Aligned_cols=27 Identities=15% Similarity=-0.010 Sum_probs=22.0
Q ss_pred CCCccchhhhHHHHHHHHHHHhHHhhc
Q 030572 70 RANSAGFFVGGFVLGGIIVGTLGCVYA 96 (175)
Q Consensus 70 ~~Gf~ggFl~G~llGGaVGGvlGlL~A 96 (175)
+.---.|++.+++.|=+||-++..|+|
T Consensus 68 g~~~~AG~~tn~fyGf~igL~i~~lva 94 (97)
T PF05440_consen 68 GTYYIAGIFTNMFYGFIIGLVIAGLVA 94 (97)
T ss_pred cceeehhhhhhHHHHHHHHHHHHHHHH
Confidence 345577999999999999998877775
No 181
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=24.16 E-value=2.8e+02 Score=25.90 Aligned_cols=27 Identities=15% Similarity=0.253 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHhHHhhcccc-hHHHHh
Q 030572 79 GGFVLGGIIVGTLGCVYAPQI-SKALAG 105 (175)
Q Consensus 79 ~G~llGGaVGGvlGlL~APR~-~kel~~ 105 (175)
.-.++|-+++.++..++.|+. .+.++.
T Consensus 133 ~ei~iGi~~a~~v~~l~~P~~~~~~l~~ 160 (650)
T PF04632_consen 133 LEILIGILCATLVSMLFFPQRARRQLRR 160 (650)
T ss_pred HHHHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 557899999999999999954 444433
No 182
>PRK00736 hypothetical protein; Provisional
Probab=24.13 E-value=1.9e+02 Score=20.48 Aligned_cols=8 Identities=0% Similarity=0.140 Sum_probs=3.3
Q ss_pred HHHhhccc
Q 030572 149 VSAQLRTE 156 (175)
Q Consensus 149 vr~QL~~~ 156 (175)
...|++..
T Consensus 45 L~~rl~~~ 52 (68)
T PRK00736 45 LTERFLSL 52 (68)
T ss_pred HHHHHHHh
Confidence 33344443
No 183
>PRK15396 murein lipoprotein; Provisional
Probab=24.06 E-value=3e+02 Score=20.34 Aligned_cols=17 Identities=24% Similarity=0.515 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030572 135 LTEKIAQLNSAIDDVSA 151 (175)
Q Consensus 135 Le~kIaqLN~AIddvr~ 151 (175)
|..+++||.+.+++++.
T Consensus 37 L~~kvdql~~dv~~~~~ 53 (78)
T PRK15396 37 LNAKVDQLSNDVNAMRS 53 (78)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555444
No 184
>PRK08124 flagellar motor protein MotA; Validated
Probab=23.77 E-value=2.2e+02 Score=24.75 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=15.3
Q ss_pred HHHHHhHHhhcccchHHHHhhh
Q 030572 86 IIVGTLGCVYAPQISKALAGAA 107 (175)
Q Consensus 86 aVGGvlGlL~APR~~kel~~~l 107 (175)
++||.+|.++..-.-+......
T Consensus 39 V~Ggt~~a~~i~~~~~~~~~~~ 60 (263)
T PRK08124 39 IIVGTIAAVMIAFPMSELKKVP 60 (263)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 6788888887776666665544
No 185
>TIGR01427 PTS_IIC_fructo PTS system, fructose subfamily, IIC component. This model represents the IIC component, or IIC region of a IIABC or IIBC polypeptide of a phosphotransferase system for carbohydrate transport. Members of this family belong to the fructose-specific subfamily of the broader family (pfam02378) of PTS IIC proteins. Members should be found as part of the same chain or in the same operon as fructose family IIA (TIGR00848) and IIB (TIGR00829) protein regions. A number of bacterial species have members in two different branches of this subfamily, suggesting some diversity in substrate specificity of its members.
Probab=23.40 E-value=76 Score=28.84 Aligned_cols=40 Identities=30% Similarity=0.425 Sum_probs=25.2
Q ss_pred ecCCCCCCCccchhhhHHH--------HHHHHHHHhHHhhcccchHHH
Q 030572 64 SNSEGGRANSAGFFVGGFV--------LGGIIVGTLGCVYAPQISKAL 103 (175)
Q Consensus 64 ~~~~~~~~Gf~ggFl~G~l--------lGGaVGGvlGlL~APR~~kel 103 (175)
.|+-.+|.|..-||++|++ +|+++.+++...+...+.|-.
T Consensus 83 a~Sia~k~g~~pG~i~G~~~~~~~~GflGgII~gilag~~~~~lek~i 130 (346)
T TIGR01427 83 AYSIADRPGLAPGMIAGLIANNFNSGFLGGIIAGFLAGYVVKGLQKYI 130 (346)
T ss_pred HHHHccCcCCcHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3565667787778888876 466666666555554444443
No 186
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=23.29 E-value=2.3e+02 Score=23.46 Aligned_cols=26 Identities=8% Similarity=0.244 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHH
Q 030572 123 DEEKALEKTRKILTEKIAQLNSAIDD 148 (175)
Q Consensus 123 dee~~iE~arr~Le~kIaqLN~AIdd 148 (175)
++.++.+.-++--+|.++-...|++.
T Consensus 118 ~d~~l~~~i~~~r~DE~~H~d~A~~~ 143 (172)
T PF03232_consen 118 EDPELRAIIEQFRDDELEHRDTAIEA 143 (172)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 34457777777777777777777764
No 187
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=23.25 E-value=84 Score=22.13 Aligned_cols=15 Identities=20% Similarity=0.363 Sum_probs=5.9
Q ss_pred hhhhHHHHHHHHHHH
Q 030572 76 FFVGGFVLGGIIVGT 90 (175)
Q Consensus 76 gFl~G~llGGaVGGv 90 (175)
-+++..++.|++.|+
T Consensus 60 lil~l~~~~Gl~lgi 74 (82)
T PF13807_consen 60 LILALGLFLGLILGI 74 (82)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334333333444443
No 188
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=23.17 E-value=1.2e+02 Score=28.78 Aligned_cols=32 Identities=9% Similarity=0.157 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCCcccCCccc
Q 030572 138 KIAQLNSAIDDVSAQLRTEDDDAPNGVAVNSGEV 171 (175)
Q Consensus 138 kIaqLN~AIddvr~QL~~~~~~~~n~~~~~~~e~ 171 (175)
.+.++.++|...|+-|+.. ....|++|++++.
T Consensus 353 ~~~~i~~~i~~~R~~Lr~~--~~~sgv~IEp~~~ 384 (454)
T TIGR01219 353 ELLEAREAMLRIRRLMRQI--TEEASVDIEPESQ 384 (454)
T ss_pred cHHHHHHHHHHHHHHHHHh--hHhcCCcccCHHH
Confidence 4777999999999999999 6778999998764
No 189
>PF06961 DUF1294: Protein of unknown function (DUF1294); InterPro: IPR010718 This family includes a number of hypothetical bacterial and archaeal proteins of unknown function.
Probab=23.15 E-value=88 Score=21.62 Aligned_cols=19 Identities=26% Similarity=0.170 Sum_probs=13.7
Q ss_pred hhhhHHHHHHHHHHHhHHh
Q 030572 76 FFVGGFVLGGIIVGTLGCV 94 (175)
Q Consensus 76 gFl~G~llGGaVGGvlGlL 94 (175)
-++.-.++||.+|+.+|-.
T Consensus 26 ~L~~la~~GG~~Ga~~~m~ 44 (55)
T PF06961_consen 26 TLLLLALLGGWPGALLGMY 44 (55)
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 4666677888888887754
No 190
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=23.13 E-value=68 Score=28.20 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHhHHhhc
Q 030572 77 FVGGFVLGGIIVGTLGCVYA 96 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGlL~A 96 (175)
.+.|+++|.+++|+++++++
T Consensus 336 l~~~~~~gl~l~~~~~l~~~ 355 (362)
T TIGR01010 336 ILATFVILLILYGVLSLLLA 355 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777665
No 191
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=22.99 E-value=2e+02 Score=20.96 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=11.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhh
Q 030572 128 LEKTRKILTEKIAQLNSAIDDVSAQL 153 (175)
Q Consensus 128 iE~arr~Le~kIaqLN~AIddvr~QL 153 (175)
++...+.|++.+.+++..|..+.+.+
T Consensus 89 l~~~~~~l~~~~~~~~~~~~~~~~~l 114 (120)
T PF02996_consen 89 LEEQLEKLEKELAELQAQIEQLEQTL 114 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 192
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=22.91 E-value=3e+02 Score=26.38 Aligned_cols=20 Identities=25% Similarity=0.087 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHHHhHHhhc
Q 030572 77 FVGGFVLGGIIVGTLGCVYA 96 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGlL~A 96 (175)
|+.|+++|.++|-.+.--.|
T Consensus 4 ~~vG~iiG~~ig~~~ak~~a 23 (514)
T TIGR03319 4 ALVALIVGLIIGYLLRKRIA 23 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555566555555433333
No 193
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=22.86 E-value=2.8e+02 Score=24.46 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=21.4
Q ss_pred HHHHhhCCCcchh---HHHHHHHHHHhHHHHHHHHHHHHHH
Q 030572 111 KDLMRKLPKFIYD---EEKALEKTRKILTEKIAQLNSAIDD 148 (175)
Q Consensus 111 k~~~~~~p~~~~d---ee~~iE~arr~Le~kIaqLN~AIdd 148 (175)
....++.|...|- .=-..|.|.+++.++|++|...|..
T Consensus 33 ~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 33 AQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667766652 2234456666666666666666544
No 194
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.67 E-value=1.9e+02 Score=25.46 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=32.9
Q ss_pred CcchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccc
Q 030572 119 KFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLRTE 156 (175)
Q Consensus 119 ~~~~dee~~iE~arr~Le~kIaqLN~AIddvr~QL~~~ 156 (175)
+..-|+-..+++.-.++|+||.+|-+-+...+.|+...
T Consensus 15 psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~ 52 (218)
T KOG1655|consen 15 PSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKT 52 (218)
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 44456667899999999999999999999999999887
No 195
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=22.66 E-value=62 Score=25.64 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=18.4
Q ss_pred CccchhhhHHHHHHHHHHHhHHhhcc
Q 030572 72 NSAGFFVGGFVLGGIIVGTLGCVYAP 97 (175)
Q Consensus 72 Gf~ggFl~G~llGGaVGGvlGlL~AP 97 (175)
|+-+-|+-||++|-.|-++++++++-
T Consensus 75 G~~tna~yGfviGl~i~aLlAlil~~ 100 (108)
T COG4062 75 GYLTNAFYGFVIGLGIMALLALILGV 100 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677788887777777777654
No 196
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=22.56 E-value=65 Score=25.93 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=16.5
Q ss_pred HHHHHHHHHhHHhhcccchHHHHh
Q 030572 82 VLGGIIVGTLGCVYAPQISKALAG 105 (175)
Q Consensus 82 llGGaVGGvlGlL~APR~~kel~~ 105 (175)
++++++|.++|+++.-+..+....
T Consensus 107 ~~~~~~g~~~g~~~~r~~~~~~~~ 130 (154)
T PRK10862 107 LCGALLGGVGGFLLARGLSRKLAA 130 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 556677778888887776665533
No 197
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=22.52 E-value=56 Score=27.53 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHhHHhhccc
Q 030572 78 VGGFVLGGIIVGTLGCVYAPQ 98 (175)
Q Consensus 78 l~G~llGGaVGGvlGlL~APR 98 (175)
++|+++|-++|+++...+.+.
T Consensus 147 ~~~L~~G~~lGs~l~~~l~~~ 167 (194)
T PF11833_consen 147 LGGLVVGLILGSLLASWLPVD 167 (194)
T ss_pred HHHHHHHHHHHHHHHhhcccc
Confidence 345566666666666666554
No 198
>PRK11280 hypothetical protein; Provisional
Probab=22.51 E-value=72 Score=26.86 Aligned_cols=21 Identities=14% Similarity=0.030 Sum_probs=14.0
Q ss_pred HHHHHHhHHhhcccchHHHHh
Q 030572 85 GIIVGTLGCVYAPQISKALAG 105 (175)
Q Consensus 85 GaVGGvlGlL~APR~~kel~~ 105 (175)
.++|+++|.++..++++.+.+
T Consensus 92 t~~Ga~~G~~~G~~i~~~~~~ 112 (170)
T PRK11280 92 TVAGALGGGYAGNQIQGGMQE 112 (170)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 456677777777777766543
No 199
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=22.50 E-value=59 Score=27.48 Aligned_cols=17 Identities=18% Similarity=-0.009 Sum_probs=8.1
Q ss_pred HHHHHHHHhHHHHHHHH
Q 030572 126 KALEKTRKILTEKIAQL 142 (175)
Q Consensus 126 ~~iE~arr~Le~kIaqL 142 (175)
++....+..|++....|
T Consensus 122 ~L~~~~~~~L~~ia~~L 138 (219)
T PRK10510 122 TLKPAGANTLTGVAMVL 138 (219)
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 34445555555544333
No 200
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=22.44 E-value=1.7e+02 Score=23.93 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=13.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhc
Q 030572 128 LEKTRKILTEKIAQLNSAIDDVSAQLR 154 (175)
Q Consensus 128 iE~arr~Le~kIaqLN~AIddvr~QL~ 154 (175)
++++++.+++.|++|-+.|..+.+++.
T Consensus 106 l~~~~~~l~~~l~~l~~~~~~l~~~~q 132 (145)
T COG1730 106 LEKAIEKLQQALAELAQRIEQLEQEAQ 132 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555544443
No 201
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.39 E-value=91 Score=24.78 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=10.7
Q ss_pred CccchhhhHHHHHHHHH
Q 030572 72 NSAGFFVGGFVLGGIIV 88 (175)
Q Consensus 72 Gf~ggFl~G~llGGaVG 88 (175)
+|.++-++|.+||-+.|
T Consensus 60 ~fs~~~i~~Ii~gv~aG 76 (122)
T PF01102_consen 60 RFSEPAIIGIIFGVMAG 76 (122)
T ss_dssp SSS-TCHHHHHHHHHHH
T ss_pred CccccceeehhHHHHHH
Confidence 78888787777664333
No 202
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=22.34 E-value=1.5e+02 Score=27.21 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 030572 136 TEKIAQLNSAIDDVSAQLRTE 156 (175)
Q Consensus 136 e~kIaqLN~AIddvr~QL~~~ 156 (175)
-..|.||++.|+-++..|..-
T Consensus 123 RkEIkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 123 RKEIKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HHHHHHHHHHHHHHHhhhchh
Confidence 357999999999999998766
No 203
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=22.32 E-value=2.4e+02 Score=23.53 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=26.1
Q ss_pred ccchhhhHHHHHHHHHHHhHHhhcccchHHHHhhh
Q 030572 73 SAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAA 107 (175)
Q Consensus 73 f~ggFl~G~llGGaVGGvlGlL~APR~~kel~~~l 107 (175)
.+++|..|.+.|++.+.+-|+--+|+- +.+...+
T Consensus 19 ~G~af~~G~vgG~~~~~~~G~rnsp~g-~rl~g~l 52 (164)
T PTZ00236 19 MGGAFSMGCIGGFIWHFLKGMRNSPKG-ERFSGGF 52 (164)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCc-chHHHHH
Confidence 468999999999999999999888853 3344444
No 204
>PRK04758 hypothetical protein; Validated
Probab=22.06 E-value=1.1e+02 Score=25.50 Aligned_cols=52 Identities=23% Similarity=0.168 Sum_probs=28.1
Q ss_pred cchHHHHhhhhhhHHHHhhCCCcchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 030572 98 QISKALAGAAADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQL 153 (175)
Q Consensus 98 R~~kel~~~l~d~k~~~~~~p~~~~dee~~iE~arr~Le~kIaqLN~AIddvr~QL 153 (175)
+.+.+.++++ +++.+ +-++.+|+++..|...+.+++.|+=++-+.=-+-..+
T Consensus 119 ~~s~e~~E~L---~Dl~~-Iaql~~d~~ed~ee~E~al~El~EyvRvaall~~~e~ 170 (181)
T PRK04758 119 ALSEEGEEAL---QDLAR-LAQASSDDFDAAEEDDTALAEIEEFVRVAVLLLHGDC 170 (181)
T ss_pred cCCHHHHHHH---HHHHH-HHccCCCcccCchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455666666 44332 2223333233355566678888887777655444443
No 205
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=22.05 E-value=64 Score=26.98 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=16.0
Q ss_pred chhhhHHHHHHHHHHHhHHhh
Q 030572 75 GFFVGGFVLGGIIVGTLGCVY 95 (175)
Q Consensus 75 ggFl~G~llGGaVGGvlGlL~ 95 (175)
.||++|.+.|.++|-+.|++.
T Consensus 51 rG~i~gvl~g~l~g~i~~~l~ 71 (175)
T PF01864_consen 51 RGFIGGVLAGTLVGIIQGLLL 71 (175)
T ss_pred EeeeHHHHHHHHHHHHHHHHh
Confidence 478888888888887777763
No 206
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=21.99 E-value=76 Score=29.54 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=26.0
Q ss_pred CccchhhhHHHHHHHHHHHhHHhhcccchH
Q 030572 72 NSAGFFVGGFVLGGIIVGTLGCVYAPQISK 101 (175)
Q Consensus 72 Gf~ggFl~G~llGGaVGGvlGlL~APR~~k 101 (175)
.....|+.|+++|.++|++..+++=|++..
T Consensus 387 ~~~~~~~~G~l~~~~~a~~~~~~vlP~~~~ 416 (650)
T PF04632_consen 387 PALRLFLIGALLGAVLAFLYLFFVLPHLDG 416 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence 446789999999999999999999998775
No 207
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.99 E-value=4.5e+02 Score=23.50 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=13.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhc
Q 030572 127 ALEKTRKILTEKIAQLNSAIDDVSAQLR 154 (175)
Q Consensus 127 ~iE~arr~Le~kIaqLN~AIddvr~QL~ 154 (175)
.+.+-.++++++..+|++.|.+....+.
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~ 81 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLD 81 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555554444433
No 208
>COG4399 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.87 E-value=66 Score=30.32 Aligned_cols=17 Identities=41% Similarity=0.362 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHhHHhh
Q 030572 79 GGFVLGGIIVGTLGCVY 95 (175)
Q Consensus 79 ~G~llGGaVGGvlGlL~ 95 (175)
.|+++||+||.+=|+++
T Consensus 357 LGgiLGgiIG~~Q~l~~ 373 (376)
T COG4399 357 LGGILGGIIGLIQGLFA 373 (376)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46677777777766553
No 209
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=21.83 E-value=3.6e+02 Score=20.40 Aligned_cols=13 Identities=15% Similarity=0.516 Sum_probs=7.5
Q ss_pred HHHHHHHHhHHhh
Q 030572 83 LGGIIVGTLGCVY 95 (175)
Q Consensus 83 lGGaVGGvlGlL~ 95 (175)
+|+++..++||++
T Consensus 10 ~~~v~~~i~~y~~ 22 (87)
T PF10883_consen 10 VGAVVALILAYLW 22 (87)
T ss_pred HHHHHHHHHHHHH
Confidence 4555566666654
No 210
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=21.83 E-value=79 Score=26.63 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=15.3
Q ss_pred chhhhHHHHHHHHHHHhHHhhcc
Q 030572 75 GFFVGGFVLGGIIVGTLGCVYAP 97 (175)
Q Consensus 75 ggFl~G~llGGaVGGvlGlL~AP 97 (175)
|+|+.|.++|+++...+-.-+-|
T Consensus 148 ~~L~~G~~lGs~l~~~l~~~~~p 170 (194)
T PF11833_consen 148 GGLVVGLILGSLLASWLPVDIVP 170 (194)
T ss_pred HHHHHHHHHHHHHHhhcccccCC
Confidence 57777777777777666554444
No 211
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=21.82 E-value=87 Score=27.89 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=31.7
Q ss_pred CCcceEEee-cCCCC--CCCccchhhhHHHHHHHHHHHhHHhhcc
Q 030572 56 RRPFKVHAS-NSEGG--RANSAGFFVGGFVLGGIIVGTLGCVYAP 97 (175)
Q Consensus 56 ~~~~~v~a~-~~~~~--~~Gf~ggFl~G~llGGaVGGvlGlL~AP 97 (175)
-..+.+-.+ |.-|. +.|.=+.++.|.++|.+.+++++-+++.
T Consensus 124 Ep~laiI~ekYGldSpEgrGVl~~Yi~GTvfGtiffsllas~~a~ 168 (241)
T PF11299_consen 124 EPNLAIISEKYGLDSPEGRGVLGVYIIGTVFGTIFFSLLASLLAS 168 (241)
T ss_pred CcceeeeehhcCCCCccccceEEEeeehhhHHHHHHHHHHHHHHh
Confidence 344555555 66544 3477789999999999999999998876
No 212
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=21.73 E-value=4.6e+02 Score=22.51 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=8.1
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q 030572 132 RKILTEKIAQLNSAIDDVS 150 (175)
Q Consensus 132 rr~Le~kIaqLN~AIddvr 150 (175)
...++..|+.|+..++...
T Consensus 137 ~~~~~~~i~~l~~~~~~~~ 155 (301)
T PF14362_consen 137 IARLDAEIAALQAEIDQLE 155 (301)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 213
>PF03623 Focal_AT: Focal adhesion targeting region; InterPro: IPR005189 Focal adhesion kinase (FAK) is a tyrosine kinase found in focal adhesions, intracellular signalling complexes that are formed following engagement of the extracellular matrix by integrins. The C-terminal "focal adhesion targeting" (FAT) region is necessary and sufficient for localizing FAK to focal adhesions. The crystal structure of FAT shows it forms a four-helix bundle that resembles those found in two other proteins involved in cell adhesion, alpha-catenin and vinculin []. The binding of FAT to the focal adhesion protein, paxillin, requires the integrity of the helical bundle, whereas binding to another focal adhesion protein, talin, does not.; GO: 0004713 protein tyrosine kinase activity, 0004871 signal transducer activity, 0006468 protein phosphorylation, 0007172 signal complex assembly, 0005925 focal adhesion; PDB: 1K05_C 1OW8_C 1OW7_C 3S9O_C 3B71_B 1K04_A 1OW6_C 3GM1_B 3GM3_A 3GM2_A ....
Probab=21.71 E-value=2.8e+02 Score=22.72 Aligned_cols=49 Identities=22% Similarity=0.353 Sum_probs=30.5
Q ss_pred chHHHHhhhhhhHHHHhhCCCcchhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 030572 99 ISKALAGAAADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVS 150 (175)
Q Consensus 99 ~~kel~~~l~d~k~~~~~~p~~~~dee~~iE~arr~Le~kIaqLN~AIddvr 150 (175)
+|-+++.++..-......+| ...-+.+|.|.+.|+.-+++|=+++..+.
T Consensus 44 VG~~Lr~Ll~sVd~~~~~l~---~s~~~EVema~klL~~DM~eLi~~mklaq 92 (139)
T PF03623_consen 44 VGLALRDLLTSVDQILPSLP---SSVRREVEMAHKLLSKDMAELISAMKLAQ 92 (139)
T ss_dssp HHHHHHHHHHHHHHHGGGSH---TTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555511111223333 33456799999999999999988886654
No 214
>PF03035 RNA_capsid: Calicivirus putative RNA polymerase/capsid protein; InterPro: IPR004278 Caliciviruses are a small round-structured virus group defined by RNA-dependent RNA polymerase and capsid diversity.
Probab=21.58 E-value=64 Score=28.50 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHhHHhhcccchHHHHhhh
Q 030572 78 VGGFVLGGIIVGTLGCVYAPQISKALAGAA 107 (175)
Q Consensus 78 l~G~llGGaVGGvlGlL~APR~~kel~~~l 107 (175)
++|++|||+.|.++|-.+..=|+--...++
T Consensus 1 MAgAf~a~lAgd~~g~~vgslI~AGAnAin 30 (226)
T PF03035_consen 1 MAGAFIAGLAGDALGSGVGSLINAGANAIN 30 (226)
T ss_pred CcHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 478999999999999998888887765543
No 215
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=21.45 E-value=87 Score=25.40 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=21.3
Q ss_pred cchhhhHHHHHHHHHHHhHHhhccc
Q 030572 74 AGFFVGGFVLGGIIVGTLGCVYAPQ 98 (175)
Q Consensus 74 ~ggFl~G~llGGaVGGvlGlL~APR 98 (175)
+..|+.|+++|++.|-.-|+-=+|.
T Consensus 39 G~ay~~G~~~Gg~~Gl~~G~~~~~~ 63 (149)
T TIGR00983 39 GTCYLTGLAIGALNGLRLGLKETQS 63 (149)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 4789999999999999999887664
No 216
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=21.43 E-value=1.7e+02 Score=24.12 Aligned_cols=49 Identities=18% Similarity=0.303 Sum_probs=30.3
Q ss_pred HHhhcccchHHHHhhhhhhHHHHhhCCCcchhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 030572 92 GCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDD 148 (175)
Q Consensus 92 GlL~APR~~kel~~~l~d~k~~~~~~p~~~~dee~~iE~arr~Le~kIaqLN~AIdd 148 (175)
+++.-|+...++.+.+ .++-.+.-|.+++.|.|++ |++.++++.+.-.+
T Consensus 122 ~y~pDP~AA~alL~~L-------~kllgl~vd~~~L~e~Ae~-ie~~~~~~~~~~~~ 170 (188)
T TIGR00162 122 GYMIDPKAAKAVLEVL-------CKMLSLEVSVEALEERAKE-MEKIIAKIKEMEEE 170 (188)
T ss_pred CCCCChHHHHHHHHHH-------HHHHCCCCCHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3444555555555433 2333455566666666665 89999988887766
No 217
>PRK15086 ethanolamine utilization protein EutH; Provisional
Probab=21.43 E-value=67 Score=30.22 Aligned_cols=46 Identities=20% Similarity=0.125 Sum_probs=27.4
Q ss_pred CcceEEeecCCCCCCCccchh----hhHHHHHHHHHHHhHHhhcccchHH
Q 030572 57 RPFKVHASNSEGGRANSAGFF----VGGFVLGGIIVGTLGCVYAPQISKA 102 (175)
Q Consensus 57 ~~~~v~a~~~~~~~~Gf~ggF----l~G~llGGaVGGvlGlL~APR~~ke 102 (175)
-.++|+|+|-=++.=||..+| +.=+++|=++||+++.++|-...+.
T Consensus 309 ~AFaVs~Afv~GdhLGFta~~~p~mI~p~iigKL~~Gi~Ai~~A~~~~~~ 358 (372)
T PRK15086 309 VAFAVSAAFVLGDHLGFTAGVQPTMIFPMIVGKLIGGITAIGVAILLSVK 358 (372)
T ss_pred ehhhhhHHHHhcccccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 457888887656555776654 4445666666666655555444433
No 218
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.39 E-value=1.1e+02 Score=23.37 Aligned_cols=27 Identities=19% Similarity=0.486 Sum_probs=11.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhc
Q 030572 128 LEKTRKILTEKIAQLNSAIDDVSAQLR 154 (175)
Q Consensus 128 iE~arr~Le~kIaqLN~AIddvr~QL~ 154 (175)
++.....+++.+..|+..|+..++++.
T Consensus 99 l~~~~~~l~~~~~~l~~~l~~~~~~~~ 125 (140)
T PRK03947 99 LDKRKEELEKALEKLEEALQKLASRIA 125 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 219
>PRK10404 hypothetical protein; Provisional
Probab=21.35 E-value=2.6e+02 Score=21.29 Aligned_cols=25 Identities=0% Similarity=0.151 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q 030572 124 EEKALEKTRKILTEKIAQLNSAIDD 148 (175)
Q Consensus 124 ee~~iE~arr~Le~kIaqLN~AIdd 148 (175)
..+.++..|.++++.+.++++.+.+
T Consensus 32 a~e~~~~lR~r~~~~L~~ar~~l~~ 56 (101)
T PRK10404 32 ADQKYVELKARAEKALDDVKKRVSQ 56 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666677666666666655544
No 220
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=21.30 E-value=1.4e+02 Score=25.38 Aligned_cols=34 Identities=12% Similarity=0.252 Sum_probs=23.4
Q ss_pred CCcchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 030572 118 PKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQ 152 (175)
Q Consensus 118 p~~~~dee~~iE~arr~Le~kIaqLN~AIddvr~Q 152 (175)
-.+.-|.+++.|.|++ ||+++.+|-+...++..+
T Consensus 197 ~~~~id~~~L~e~Ae~-ie~~~~el~e~~~~~~~~ 230 (238)
T TIGR00161 197 LNTNVDPEPLLKEAEA-IESRLKKLAEQVQGMMSK 230 (238)
T ss_pred hCCCcCHHHHHHHHHH-HHHHHHHHHHHHHHhccc
Confidence 3444566777777774 899998888877665433
No 221
>PF14241 DUF4341: Domain of unknown function (DUF4341)
Probab=21.17 E-value=64 Score=22.38 Aligned_cols=14 Identities=36% Similarity=0.842 Sum_probs=11.0
Q ss_pred chhhhHHHHHHHHH
Q 030572 75 GFFVGGFVLGGIIV 88 (175)
Q Consensus 75 ggFl~G~llGGaVG 88 (175)
=-|++|+++|+++.
T Consensus 48 ~~fl~Gl~~g~~l~ 61 (62)
T PF14241_consen 48 LAFLAGLILGGFLA 61 (62)
T ss_pred HHHHHHHHHHHHHh
Confidence 47889998888763
No 222
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.12 E-value=1.9e+02 Score=26.18 Aligned_cols=70 Identities=13% Similarity=0.096 Sum_probs=47.0
Q ss_pred CccchhhhHHHHHH---------HHHHHhHHhhcccchHHHHhhhhhh---H----HHHhhCCCcchhHHHHHHHHHHhH
Q 030572 72 NSAGFFVGGFVLGG---------IIVGTLGCVYAPQISKALAGAAADR---K----DLMRKLPKFIYDEEKALEKTRKIL 135 (175)
Q Consensus 72 Gf~ggFl~G~llGG---------aVGGvlGlL~APR~~kel~~~l~d~---k----~~~~~~p~~~~dee~~iE~arr~L 135 (175)
-|.=-.++|-++|- -.|++|-+.++||-.++.|. +.- + ++..-.....++.+.+++.+|+.|
T Consensus 181 ~~se~~~~~~~fgpdtDknd~llylg~vLey~lgnkk~ke~rr--eql~rik~glskiag~gk~skekp~~ll~~~re~y 258 (267)
T COG1655 181 KFSEMYLIGELFGPDTDKNDALLYLGNVLEYSLGNKKLKEMRR--EQLDRIKEGLSKIAGTGKNSKEKPDNLLATTREKY 258 (267)
T ss_pred ccchhhhhhhhcCCCCCccceeehhHHHHHHHhcchhHHHHHH--HHHHHHHhhHHHHhccCcccccCCchHHHHHHHHH
Confidence 34455666666665 46789999999999999866 321 1 122222233466778999999999
Q ss_pred HHHHHHHH
Q 030572 136 TEKIAQLN 143 (175)
Q Consensus 136 e~kIaqLN 143 (175)
+.-...+|
T Consensus 259 ~~lske~~ 266 (267)
T COG1655 259 GLLSKEFN 266 (267)
T ss_pred HHHHHHhc
Confidence 88776655
No 223
>PRK12579 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=21.11 E-value=73 Score=28.24 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=13.4
Q ss_pred CCccchhhhHHHHHHHH
Q 030572 71 ANSAGFFVGGFVLGGII 87 (175)
Q Consensus 71 ~Gf~ggFl~G~llGGaV 87 (175)
+.-+|||.+|.++|.++
T Consensus 136 ~~PGGGF~gGlI~a~A~ 152 (258)
T PRK12579 136 ITPGGGFQGGALIAAAY 152 (258)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 45569999999988765
No 224
>PRK09835 sensor kinase CusS; Provisional
Probab=21.09 E-value=4.5e+02 Score=22.80 Aligned_cols=30 Identities=0% Similarity=-0.063 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHHhHHhhcccchHHHHhh
Q 030572 77 FVGGFVLGGIIVGTLGCVYAPQISKALAGA 106 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGlL~APR~~kel~~~ 106 (175)
++.-+++..++..++++++.-++-+-+..+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l 216 (482)
T PRK09835 187 LIMTASVISLLIVFIVLLAVHKGHAPIRSV 216 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566667777766666666554
No 225
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=20.98 E-value=2e+02 Score=22.75 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=21.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Q 030572 126 KALEKTRKILTEKIAQLNSAIDDVSAQLR 154 (175)
Q Consensus 126 ~~iE~arr~Le~kIaqLN~AIddvr~QL~ 154 (175)
..+...+.+...+|..|+..|+++++++.
T Consensus 47 ~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 47 QSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677888888888888887765
No 226
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=20.98 E-value=4.1e+02 Score=20.72 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=9.1
Q ss_pred HHHHHhHHhhccc-chHHH
Q 030572 86 IIVGTLGCVYAPQ-ISKAL 103 (175)
Q Consensus 86 aVGGvlGlL~APR-~~kel 103 (175)
++.+++.++..|+ +.+-+
T Consensus 13 i~l~~l~~~~~~~pi~~~l 31 (159)
T PRK09173 13 LFLALVVYLKVPGMIARSL 31 (159)
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 3555566665554 44433
No 227
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=20.90 E-value=67 Score=24.95 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=15.2
Q ss_pred CccchhhhHHHHHHHHHHHhHH
Q 030572 72 NSAGFFVGGFVLGGIIVGTLGC 93 (175)
Q Consensus 72 Gf~ggFl~G~llGGaVGGvlGl 93 (175)
++.--+++|+++|...|+++|.
T Consensus 38 ~~~~i~l~~~l~Gp~~G~ivg~ 59 (169)
T PF07155_consen 38 GSIPIILAGLLFGPKYGAIVGA 59 (169)
T ss_pred hhHHHHHHHHHHChHHHHHHHH
Confidence 5566788888888666655553
No 228
>PHA03332 membrane glycoprotein; Provisional
Probab=20.83 E-value=2.4e+02 Score=30.57 Aligned_cols=24 Identities=13% Similarity=0.019 Sum_probs=16.5
Q ss_pred CCCccchhhhHHHHHHHHHHHhHH
Q 030572 70 RANSAGFFVGGFVLGGIIVGTLGC 93 (175)
Q Consensus 70 ~~Gf~ggFl~G~llGGaVGGvlGl 93 (175)
+..|.|..++|+.||=+.-+.+..
T Consensus 842 prRF~G~viag~AIGvATAAqiTA 865 (1328)
T PHA03332 842 PRRFGGSVMAGDAIGLSAAAFTMA 865 (1328)
T ss_pred cccchhhhhhhhHHHHHHHHHHHH
Confidence 447888888888887666555444
No 229
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=20.83 E-value=54 Score=27.60 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=6.6
Q ss_pred HHhHHHHHHHH
Q 030572 132 RKILTEKIAQL 142 (175)
Q Consensus 132 rr~Le~kIaqL 142 (175)
|+...++|.++
T Consensus 101 r~~I~~~l~~~ 111 (188)
T PF04391_consen 101 RQRIEGALQEL 111 (188)
T ss_pred HHHHHHHHHHh
Confidence 45566666664
No 230
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=20.82 E-value=1.1e+02 Score=20.39 Aligned_cols=20 Identities=25% Similarity=0.594 Sum_probs=17.1
Q ss_pred hhhhHHHHHHHHHHHhHHhh
Q 030572 76 FFVGGFVLGGIIVGTLGCVY 95 (175)
Q Consensus 76 gFl~G~llGGaVGGvlGlL~ 95 (175)
..+.|++.|-+|-+++|+.|
T Consensus 10 LWlVgtv~G~~vi~lvglFf 29 (40)
T PF01788_consen 10 LWLVGTVAGIAVIGLVGLFF 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhe
Confidence 46789999999999999876
No 231
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.69 E-value=2.1e+02 Score=21.47 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=11.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhh
Q 030572 128 LEKTRKILTEKIAQLNSAIDDVSAQL 153 (175)
Q Consensus 128 iE~arr~Le~kIaqLN~AIddvr~QL 153 (175)
++.....|++.|..+++.|+.+...+
T Consensus 99 l~~~~~~l~~~l~~l~~~~~~~~~~l 124 (129)
T cd00584 99 LTKQIEKLQKELAKLKDQINTLEAEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 232
>PF12848 ABC_tran_2: ABC transporter
Probab=20.48 E-value=2.7e+02 Score=19.08 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=18.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 030572 125 EKALEKTRKILTEKIAQLNSAIDDVS 150 (175)
Q Consensus 125 e~~iE~arr~Le~kIaqLN~AIddvr 150 (175)
....+.+..+++.+|.+|.+.|+..+
T Consensus 26 ~~~~~~~~~~~~k~~~~l~~~i~r~~ 51 (85)
T PF12848_consen 26 RERQERQYEKQQKEIKRLEEFIRRFR 51 (85)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34566667777788888888877643
No 233
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=20.47 E-value=2e+02 Score=21.48 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=14.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhc
Q 030572 128 LEKTRKILTEKIAQLNSAIDDVSAQLR 154 (175)
Q Consensus 128 iE~arr~Le~kIaqLN~AIddvr~QL~ 154 (175)
++...+.|++.++++++.+..+.+++.
T Consensus 98 l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 98 LEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555566655555555543
No 234
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=20.41 E-value=2.2e+02 Score=20.62 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=21.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Q 030572 126 KALEKTRKILTEKIAQLNSAIDDVSAQLR 154 (175)
Q Consensus 126 ~~iE~arr~Le~kIaqLN~AIddvr~QL~ 154 (175)
..++...+.++++++.++..++.+++|+.
T Consensus 73 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 73 KELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666667788888888888888777764
No 235
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.36 E-value=3.1e+02 Score=25.28 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=16.1
Q ss_pred CccchhhhHHHHHHHHHHHhHH
Q 030572 72 NSAGFFVGGFVLGGIIVGTLGC 93 (175)
Q Consensus 72 Gf~ggFl~G~llGGaVGGvlGl 93 (175)
.|-.-|+.+++++|++.++.=+
T Consensus 82 rwrdy~vmAvi~aGi~y~~y~~ 103 (300)
T KOG2629|consen 82 RWRDYFVMAVILAGIAYAAYRF 103 (300)
T ss_pred hHHHHHHHHHHHhhHHHHHHHH
Confidence 4455689999999988876543
No 236
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=20.30 E-value=3.2e+02 Score=27.35 Aligned_cols=74 Identities=9% Similarity=0.069 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHhHHhhcccchH-----HHHhhhhhhHHHHhh-CCCc--chhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 030572 78 VGGFVLGGIIVGTLGCVYAPQISK-----ALAGAAADRKDLMRK-LPKF--IYDEEKALEKTRKILTEKIAQLNSAIDDV 149 (175)
Q Consensus 78 l~G~llGGaVGGvlGlL~APR~~k-----el~~~l~d~k~~~~~-~p~~--~~dee~~iE~arr~Le~kIaqLN~AIddv 149 (175)
+..+++|++|+-+..+++-|.... ...+.++...+..+. +..+ ..+++...-.+||+.....+.|..+|+.+
T Consensus 503 l~dTlIG~~iAl~a~~li~P~w~~~~l~~~~~~al~a~~~Yl~~vl~~~~~g~~~~~~yr~aRR~a~~~~a~l~~~~~~m 582 (704)
T TIGR01666 503 LLDTLIGCAIAWAAVSYIWPDWQYLQLDKVSHQALRANAVYLLHIISQYQFGKSDDLKYRIARRNAHNYDAALSTTVSNM 582 (704)
T ss_pred HHHHHHHHHHHHHHHHHhCcchHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888886432 222222111111111 1111 11223344689999999999999998875
Q ss_pred HH
Q 030572 150 SA 151 (175)
Q Consensus 150 r~ 151 (175)
.+
T Consensus 583 ~~ 584 (704)
T TIGR01666 583 NN 584 (704)
T ss_pred Hh
Confidence 43
No 237
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.30 E-value=4e+02 Score=21.11 Aligned_cols=18 Identities=17% Similarity=0.532 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 030572 135 LTEKIAQLNSAIDDVSAQ 152 (175)
Q Consensus 135 Le~kIaqLN~AIddvr~Q 152 (175)
.++++..+++.+.+..+.
T Consensus 128 ~~~~l~~l~~~~~~~~~e 145 (191)
T PF04156_consen 128 VEERLDSLDESIKELEKE 145 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444433333
No 238
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.03 E-value=2.5e+02 Score=27.31 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=16.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhcc
Q 030572 128 LEKTRKILTEKIAQLNSAIDDVSAQLRT 155 (175)
Q Consensus 128 iE~arr~Le~kIaqLN~AIddvr~QL~~ 155 (175)
++..++.|.+.+.||...|++...||..
T Consensus 114 ~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 114 LTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444555566666666666677777743
Done!