Query 030572
Match_columns 175
No_of_seqs 101 out of 110
Neff 3.4
Searched_HMMs 29240
Date Tue Mar 26 01:47:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ldt_A Outer membrane protein, 82.3 0.49 1.7E-05 36.7 1.5 25 78-102 3-27 (169)
2 3ra3_A P1C; coiled coil domain 80.5 2.4 8.1E-05 25.2 3.7 24 127-150 4-27 (28)
3 2k1k_A Ephrin type-A receptor 77.1 2.6 8.8E-05 26.3 3.4 21 70-90 5-25 (38)
4 2lbg_A Major prion protein; co 67.1 4.4 0.00015 24.1 2.5 21 74-94 4-24 (27)
5 2l2t_A Receptor tyrosine-prote 65.8 3.8 0.00013 26.6 2.3 9 78-86 12-20 (44)
6 2j69_A Bacterial dynamin-like 60.3 9.3 0.00032 35.5 4.7 57 97-155 587-648 (695)
7 2ks1_B Epidermal growth factor 53.1 3.5 0.00012 26.7 0.4 7 79-85 14-20 (44)
8 2k1k_A Ephrin type-A receptor 48.3 15 0.0005 22.8 2.7 22 74-95 5-26 (38)
9 3viq_B Mating-type switching p 41.5 39 0.0013 24.5 4.5 30 127-156 5-34 (85)
10 1zme_C Proline utilization tra 40.8 29 0.00099 22.1 3.5 21 134-154 48-68 (70)
11 3eff_K Voltage-gated potassium 39.3 1.1E+02 0.0036 22.1 7.3 25 131-155 112-136 (139)
12 1q90_G Cytochrome B6F complex 37.1 24 0.00084 22.3 2.5 21 77-97 5-25 (37)
13 2k9j_B Integrin beta-3; transm 36.6 24 0.00082 22.3 2.4 11 81-91 11-21 (43)
14 3ldt_A Outer membrane protein, 36.3 5.2 0.00018 30.8 -0.9 21 77-97 6-26 (169)
15 1jb0_L Photosystem 1 reaction 36.0 22 0.00074 28.6 2.6 25 74-98 117-141 (154)
16 3pjs_K KCSA, voltage-gated pot 35.4 1E+02 0.0035 23.1 6.4 26 130-155 138-163 (166)
17 4egx_A Kinesin-like protein KI 33.6 50 0.0017 26.0 4.4 30 124-153 17-46 (184)
18 3gm3_A Protein tyrosine kinase 33.2 1E+02 0.0035 24.6 6.1 50 98-150 56-105 (153)
19 2yy0_A C-MYC-binding protein; 33.2 78 0.0027 20.7 4.6 30 127-156 23-52 (53)
20 2f95_B Sensory rhodopsin II tr 31.0 24 0.00082 24.7 1.9 26 81-106 65-90 (163)
21 2lw1_A ABC transporter ATP-bin 30.7 71 0.0024 22.2 4.4 36 117-156 13-48 (89)
22 2l34_A TYRO protein tyrosine k 30.0 50 0.0017 19.9 3.0 18 74-91 5-22 (33)
23 1bts_A BAND 3 anion transport 29.1 40 0.0014 19.5 2.3 18 81-98 6-23 (26)
24 1oeg_A Apolipoprotein E; siali 28.3 36 0.0012 19.9 2.0 20 127-146 2-21 (26)
25 2wsc_L Photosystem I reaction 28.2 14 0.00049 31.0 0.4 26 73-98 183-208 (216)
26 2ic9_A Nucleocapsid protein; h 24.9 86 0.0029 23.3 4.1 20 132-151 54-73 (96)
27 3efg_A Protein SLYX homolog; x 24.8 1.1E+02 0.0039 21.2 4.5 13 135-147 26-38 (78)
28 1vf5_G Protein PET G; photosyn 24.5 30 0.001 21.8 1.3 21 77-97 5-25 (37)
29 3eb7_A Insecticidal delta-endo 24.1 43 0.0015 30.5 2.8 23 131-153 67-89 (589)
30 2k48_A Nucleoprotein; viral pr 24.1 82 0.0028 23.9 3.9 23 129-151 81-103 (107)
31 2kxa_A Haemagglutinin HA2 chai 23.8 61 0.0021 19.6 2.5 17 77-93 5-21 (30)
32 1i5p_A Pesticidial crystal pro 23.5 29 0.00099 33.2 1.6 26 130-155 108-133 (633)
33 1t2k_D Cyclic-AMP-dependent tr 22.9 1.6E+02 0.0054 19.0 5.0 28 126-153 32-59 (61)
34 1tpx_A Prion protein, major pr 22.7 9.5 0.00033 29.5 -1.5 20 80-99 5-24 (121)
35 4i0x_B ESAT-6-like protein MAB 22.5 1.4E+02 0.0047 20.5 4.7 34 123-156 53-86 (103)
36 1nh2_B Transcription initiatio 22.5 42 0.0014 22.1 1.8 22 124-145 30-51 (53)
37 1r8d_A Transcription activator 22.4 1.5E+02 0.005 20.6 4.8 31 126-156 78-108 (109)
38 2ic6_A Nucleocapsid protein; h 21.9 1E+02 0.0035 22.0 3.9 20 132-151 54-73 (78)
39 3rvy_A ION transport protein; 21.6 53 0.0018 26.2 2.6 23 133-155 259-281 (285)
40 3heq_A Major prion protein; ce 21.5 12 0.00042 29.6 -1.2 19 80-98 26-44 (142)
41 3ra3_B P2F; coiled coil domain 21.2 70 0.0024 18.8 2.3 18 133-150 3-20 (28)
42 1k04_A FADK 1, focal adhesion 20.9 2.3E+02 0.0077 22.7 6.1 49 99-150 67-115 (162)
43 1g6u_A Domain swapped dimer; d 20.9 1.5E+02 0.0052 19.2 4.2 30 119-148 16-45 (48)
44 3arc_X Photosystem II PSBX pro 20.9 77 0.0026 20.1 2.7 14 76-89 8-21 (39)
45 2qkg_A Insecticidal delta-endo 20.5 62 0.0021 30.1 3.1 17 132-148 68-84 (589)
46 3he5_B Synzip2; heterodimeric 20.4 1.7E+02 0.0057 19.3 4.4 24 126-149 20-43 (52)
47 1ji6_A Pesticidial crystal pro 20.4 60 0.002 30.0 3.0 23 131-153 63-85 (589)
No 1
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=82.27 E-value=0.49 Score=36.71 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=6.5
Q ss_pred hhHHHHHHHHHHHhHHhhcccchHH
Q 030572 78 VGGFVLGGIIVGTLGCVYAPQISKA 102 (175)
Q Consensus 78 l~G~llGGaVGGvlGlL~APR~~ke 102 (175)
|.|+++|++||+++|.++.-...+.
T Consensus 3 ~~ga~~ga~~g~~~g~~ig~~~d~q 27 (169)
T 3ldt_A 3 LSGTLIGAAAGGTVGLVASIYRDSK 27 (169)
T ss_dssp --------------CCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777766555444
No 2
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=80.47 E-value=2.4 Score=25.22 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=19.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 030572 127 ALEKTRKILTEKIAQLNSAIDDVS 150 (175)
Q Consensus 127 ~iE~arr~Le~kIaqLN~AIddvr 150 (175)
.+|-...-||+||+-|++.|+...
T Consensus 4 alefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHhc
Confidence 356667789999999999998754
No 3
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=77.08 E-value=2.6 Score=26.32 Aligned_cols=21 Identities=10% Similarity=0.108 Sum_probs=15.7
Q ss_pred CCCccchhhhHHHHHHHHHHH
Q 030572 70 RANSAGFFVGGFVLGGIIVGT 90 (175)
Q Consensus 70 ~~Gf~ggFl~G~llGGaVGGv 90 (175)
.+|.++|-++|.++|.++|-+
T Consensus 5 ~~~ls~GaIAGiVvG~v~gv~ 25 (38)
T 2k1k_A 5 SRGLTGGEIVAVIFGLLLGAA 25 (38)
T ss_dssp STTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCceeeeehHHHHHHH
Confidence 346678888888888887644
No 4
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=67.06 E-value=4.4 Score=24.15 Aligned_cols=21 Identities=38% Similarity=0.460 Sum_probs=14.5
Q ss_pred cchhhhHHHHHHHHHHHhHHh
Q 030572 74 AGFFVGGFVLGGIIVGTLGCV 94 (175)
Q Consensus 74 ~ggFl~G~llGGaVGGvlGlL 94 (175)
.|.|-+|+++||+=|-++|..
T Consensus 4 ~ga~AAGaVvGglGgy~lg~~ 24 (27)
T 2lbg_A 4 AGAAAAGAVVGGLGGYMLGSA 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhHHHHHHHH
Confidence 356777777777777777654
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=65.84 E-value=3.8 Score=26.57 Aligned_cols=9 Identities=33% Similarity=0.781 Sum_probs=3.9
Q ss_pred hhHHHHHHH
Q 030572 78 VGGFVLGGI 86 (175)
Q Consensus 78 l~G~llGGa 86 (175)
++|-++||+
T Consensus 12 IA~gVVgGv 20 (44)
T 2l2t_A 12 IAAGVIGGL 20 (44)
T ss_dssp HHHHHHHHH
T ss_pred EEEeehHHH
Confidence 444444443
No 6
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=60.32 E-value=9.3 Score=35.50 Aligned_cols=57 Identities=19% Similarity=0.331 Sum_probs=29.1
Q ss_pred ccchHHHHhhhhhhHHHHhhCCCcchhHH----HHHHHHHHhHH-HHHHHHHHHHHHHHHhhcc
Q 030572 97 PQISKALAGAAADRKDLMRKLPKFIYDEE----KALEKTRKILT-EKIAQLNSAIDDVSAQLRT 155 (175)
Q Consensus 97 PR~~kel~~~l~d~k~~~~~~p~~~~dee----~~iE~arr~Le-~kIaqLN~AIddvr~QL~~ 155 (175)
-+..+.... .-.+.+.+.+|...+|-- +.++..-...+ +-..+|++.|+.+++.|.+
T Consensus 587 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~ 648 (695)
T 2j69_A 587 DQARRELVK--TAKKELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSELDN 648 (695)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555444 223446666676665522 23333333344 3334667777777766654
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=53.14 E-value=3.5 Score=26.66 Aligned_cols=7 Identities=14% Similarity=0.226 Sum_probs=2.6
Q ss_pred hHHHHHH
Q 030572 79 GGFVLGG 85 (175)
Q Consensus 79 ~G~llGG 85 (175)
++-++||
T Consensus 14 A~gVVgG 20 (44)
T 2ks1_B 14 ATGMVGA 20 (44)
T ss_dssp THHHHHH
T ss_pred EeehhHH
Confidence 3333333
No 8
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=48.31 E-value=15 Score=22.83 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=14.8
Q ss_pred cchhhhHHHHHHHHHHHhHHhh
Q 030572 74 AGFFVGGFVLGGIIVGTLGCVY 95 (175)
Q Consensus 74 ~ggFl~G~llGGaVGGvlGlL~ 95 (175)
.++.=+|.+.|-+||.++|+++
T Consensus 5 ~~~ls~GaIAGiVvG~v~gv~l 26 (38)
T 2k1k_A 5 SRGLTGGEIVAVIFGLLLGAAL 26 (38)
T ss_dssp STTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCceeeeehHHHHHHHH
Confidence 4455677777777777777653
No 9
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=41.48 E-value=39 Score=24.54 Aligned_cols=30 Identities=30% Similarity=0.473 Sum_probs=25.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhccc
Q 030572 127 ALEKTRKILTEKIAQLNSAIDDVSAQLRTE 156 (175)
Q Consensus 127 ~iE~arr~Le~kIaqLN~AIddvr~QL~~~ 156 (175)
.++.--..|++++.+|...|..++.+|.+.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~ 34 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKLKNR 34 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 577777889999999999999999998766
No 10
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=40.80 E-value=29 Score=22.12 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhc
Q 030572 134 ILTEKIAQLNSAIDDVSAQLR 154 (175)
Q Consensus 134 ~Le~kIaqLN~AIddvr~QL~ 154 (175)
.|+++|++|.+.++.+++++.
T Consensus 48 ~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 48 QLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 466666666666666665554
No 11
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=39.29 E-value=1.1e+02 Score=22.15 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=16.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhcc
Q 030572 131 TRKILTEKIAQLNSAIDDVSAQLRT 155 (175)
Q Consensus 131 arr~Le~kIaqLN~AIddvr~QL~~ 155 (175)
..+.+++++.+|.+-+++..+++.+
T Consensus 112 ~~~~l~~~~~~l~~~l~~le~~~~~ 136 (139)
T 3eff_K 112 AEEAYTRTTRALHERFDRLERMLDD 136 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455777777777777776666544
No 12
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=37.13 E-value=24 Score=22.27 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHHhHHhhcc
Q 030572 77 FVGGFVLGGIIVGTLGCVYAP 97 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGlL~AP 97 (175)
++.|.++|-+--.++|+.++.
T Consensus 5 lL~GIVlGlipvtlaGLfv~A 25 (37)
T 1q90_G 5 LLCGIVLGLVPVTIAGLFVTA 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHHHHHHHHHHHH
Confidence 688999999999999998875
No 13
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=36.60 E-value=24 Score=22.30 Aligned_cols=11 Identities=27% Similarity=0.295 Sum_probs=5.4
Q ss_pred HHHHHHHHHHh
Q 030572 81 FVLGGIIVGTL 91 (175)
Q Consensus 81 ~llGGaVGGvl 91 (175)
+++||++||++
T Consensus 11 ~Iv~gvi~~iv 21 (43)
T 2k9j_B 11 VVLLSVMGAIL 21 (43)
T ss_dssp HHHHHHHHHHH
T ss_pred ehHHHHHHHHH
Confidence 44455555543
No 14
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=36.29 E-value=5.2 Score=30.82 Aligned_cols=21 Identities=14% Similarity=0.028 Sum_probs=6.6
Q ss_pred hhhHHHHHHHHHHHhHHhhcc
Q 030572 77 FVGGFVLGGIIVGTLGCVYAP 97 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGlL~AP 97 (175)
-+.|+.+|+++|+++|.-+--
T Consensus 6 a~~ga~~g~~~g~~ig~~~d~ 26 (169)
T 3ldt_A 6 TLIGAAAGGTVGLVASIYRDS 26 (169)
T ss_dssp -----------CCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888865543
No 15
>1jb0_L Photosystem 1 reaction centre subunit XI; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.31.1.1 PDB: 3pcq_L*
Probab=36.01 E-value=22 Score=28.58 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=20.9
Q ss_pred cchhhhHHHHHHHHHHHhHHhhccc
Q 030572 74 AGFFVGGFVLGGIIVGTLGCVYAPQ 98 (175)
Q Consensus 74 ~ggFl~G~llGGaVGGvlGlL~APR 98 (175)
.+-|=+||++||.=|.+.+|++-..
T Consensus 117 Ws~Ft~GF~iGg~GGa~~Ay~Ll~~ 141 (154)
T 1jb0_L 117 WSQFTAGFFVGAMGSAFVAFFLLEN 141 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhHcccceeeecccHHHHHHHHHhc
Confidence 5579999999999999999987644
No 16
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=35.43 E-value=1e+02 Score=23.15 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=15.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhcc
Q 030572 130 KTRKILTEKIAQLNSAIDDVSAQLRT 155 (175)
Q Consensus 130 ~arr~Le~kIaqLN~AIddvr~QL~~ 155 (175)
...+.+++++.+|++-+++..+++.+
T Consensus 138 ~~~~~l~~~i~~L~~~l~~le~~~~~ 163 (166)
T 3pjs_K 138 AAEEAYTRTTRALHERFDRLERMLDD 163 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445666777777777776655543
No 17
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=33.59 E-value=50 Score=26.02 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 030572 124 EEKALEKTRKILTEKIAQLNSAIDDVSAQL 153 (175)
Q Consensus 124 ee~~iE~arr~Le~kIaqLN~AIddvr~QL 153 (175)
.|++|+...+.||+|+.+..+.-.+-.+.|
T Consensus 17 ~e~l~~el~~tWeeKl~~te~~~~e~~~~l 46 (184)
T 4egx_A 17 TEKIIAELNETWEEKLRRTEAIRMEREALL 46 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999988654444433333
No 18
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A
Probab=33.20 E-value=1e+02 Score=24.61 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=36.4
Q ss_pred cchHHHHhhhhhhHHHHhhCCCcchhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 030572 98 QISKALAGAAADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVS 150 (175)
Q Consensus 98 R~~kel~~~l~d~k~~~~~~p~~~~dee~~iE~arr~Le~kIaqLN~AIddvr 150 (175)
.+|-+++.++ ...-+-.|.+...+-+.+|.+.+.|+.-.++|=+++.-+.
T Consensus 56 ~VGl~LR~Ll---~sVd~~~~~lp~s~~~EIema~k~L~kDM~eLIs~MkLAq 105 (153)
T 3gm3_A 56 NVGLTLRKLI---GSVDDLLPSLPSSSRTEIEGTQKLLNKDLAELINKMRLAQ 105 (153)
T ss_dssp HHHHHHHHHH---HHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777766 2222334555556667899999999999999999988776
No 19
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=33.15 E-value=78 Score=20.67 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=25.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhccc
Q 030572 127 ALEKTRKILTEKIAQLNSAIDDVSAQLRTE 156 (175)
Q Consensus 127 ~iE~arr~Le~kIaqLN~AIddvr~QL~~~ 156 (175)
.+-.-...|..+++.|++.+++.+++|.+.
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 466666778999999999999999998764
No 20
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=30.99 E-value=24 Score=24.68 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhHHhhcccchHHHHhh
Q 030572 81 FVLGGIIVGTLGCVYAPQISKALAGA 106 (175)
Q Consensus 81 ~llGGaVGGvlGlL~APR~~kel~~~ 106 (175)
+++..+++.+++++++-++.+-+..+
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~~pl~~l 90 (163)
T 2f95_B 65 IILLGINLGLVAATLGGDTAASLSTL 90 (163)
T ss_dssp HHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666665443
No 21
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=30.71 E-value=71 Score=22.17 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=26.8
Q ss_pred CCCcchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccc
Q 030572 117 LPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLRTE 156 (175)
Q Consensus 117 ~p~~~~dee~~iE~arr~Le~kIaqLN~AIddvr~QL~~~ 156 (175)
..++.|.+.+.++ .|+.+|++|.+.|+....++...
T Consensus 13 ~~KLSykeqrEle----~le~~Ie~LE~~i~~le~~ladp 48 (89)
T 2lw1_A 13 SSKLSYKLQRELE----QLPQLLEDLEAKLEALQTQVADA 48 (89)
T ss_dssp SCSCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHST
T ss_pred cccCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCc
Confidence 3467776655443 58888888888888888888765
No 22
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=30.01 E-value=50 Score=19.89 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=13.8
Q ss_pred cchhhhHHHHHHHHHHHh
Q 030572 74 AGFFVGGFVLGGIIVGTL 91 (175)
Q Consensus 74 ~ggFl~G~llGGaVGGvl 91 (175)
.+|=++|+++|-+++.++
T Consensus 5 ~~gaIaGIVvgdi~~t~~ 22 (33)
T 2l34_A 5 SPGVLAGIVVGDLVLTVL 22 (33)
T ss_dssp CTHHHHHHHHHHHHHHHH
T ss_pred CcceEEeEeHHHHHHHHH
Confidence 467788888888877664
No 23
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=29.06 E-value=40 Score=19.46 Aligned_cols=18 Identities=11% Similarity=0.272 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhHHhhccc
Q 030572 81 FVLGGIIVGTLGCVYAPQ 98 (175)
Q Consensus 81 ~llGGaVGGvlGlL~APR 98 (175)
.+++.+++|++-.||+-|
T Consensus 6 ~i~s~ai~Gi~f~lf~gQ 23 (26)
T 1bts_A 6 LLISTAVQGILFALLGAX 23 (26)
T ss_dssp HHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 467777777777777654
No 24
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=28.33 E-value=36 Score=19.90 Aligned_cols=20 Identities=10% Similarity=0.287 Sum_probs=16.6
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 030572 127 ALEKTRKILTEKIAQLNSAI 146 (175)
Q Consensus 127 ~iE~arr~Le~kIaqLN~AI 146 (175)
..|..|++|+.-++.+++|.
T Consensus 2 ~~e~mr~Q~~~lveKvq~a~ 21 (26)
T 1oeg_A 2 LVEDMQRQWAGLVEKVQAAV 21 (26)
T ss_dssp HHHHTTTHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 36778999999999998874
No 25
>2wsc_L Photosystem I reaction center subunit XI, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_L* 2wsf_L* 2o01_L* 3lw5_L*
Probab=28.19 E-value=14 Score=31.04 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=21.5
Q ss_pred ccchhhhHHHHHHHHHHHhHHhhccc
Q 030572 73 SAGFFVGGFVLGGIIVGTLGCVYAPQ 98 (175)
Q Consensus 73 f~ggFl~G~llGGaVGGvlGlL~APR 98 (175)
+.+-|-+||++||.=|.+.+|++-..
T Consensus 183 GWs~Ft~GF~iGG~GGA~fAy~Ll~n 208 (216)
T 2wsc_L 183 GWAKFTGGFFFGGVSGVTWACFLMYV 208 (216)
T ss_dssp HHHHHHHHHHHHHBTTTHHHHHSCCC
T ss_pred cHHHhccceeeccccHHHHHHHHHhc
Confidence 35689999999999999999987643
No 26
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=24.93 E-value=86 Score=23.32 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=16.2
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q 030572 132 RKILTEKIAQLNSAIDDVSA 151 (175)
Q Consensus 132 rr~Le~kIaqLN~AIddvr~ 151 (175)
-..|++||++|+..+++..+
T Consensus 54 V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 54 VSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34689999999999999443
No 27
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=24.77 E-value=1.1e+02 Score=21.22 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 030572 135 LTEKIAQLNSAID 147 (175)
Q Consensus 135 Le~kIaqLN~AId 147 (175)
.|++|++||++|.
T Consensus 26 qE~tIeeLn~~v~ 38 (78)
T 3efg_A 26 QEQALTELSEALA 38 (78)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 28
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=24.51 E-value=30 Score=21.85 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHhHHhhcc
Q 030572 77 FVGGFVLGGIIVGTLGCVYAP 97 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGlL~AP 97 (175)
++.|.++|-+--.++|+.+|.
T Consensus 5 lL~GIVlGlipvtl~GLfv~A 25 (37)
T 1vf5_G 5 LLDGLVLGLVFATLGGLFYAA 25 (37)
T ss_dssp ----CHHHHHHHHHHHHTHHH
T ss_pred hhhhHHHhhHHHHHHHHHHHH
Confidence 578899999999999988875
No 29
>3eb7_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis}
Probab=24.14 E-value=43 Score=30.46 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=11.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhh
Q 030572 131 TRKILTEKIAQLNSAIDDVSAQL 153 (175)
Q Consensus 131 arr~Le~kIaqLN~AIddvr~QL 153 (175)
++..+..+++-|+.++++-...+
T Consensus 67 ~~~~a~~~l~gl~~~~~~y~~~~ 89 (589)
T 3eb7_A 67 ARAKALAELEGLGNNYQLYLTAL 89 (589)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555544433
No 30
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=24.06 E-value=82 Score=23.89 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 030572 129 EKTRKILTEKIAQLNSAIDDVSA 151 (175)
Q Consensus 129 E~arr~Le~kIaqLN~AIddvr~ 151 (175)
..+-..+++||++|+..++|..+
T Consensus 81 ~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 81 RAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 31
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=23.83 E-value=61 Score=19.55 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=12.5
Q ss_pred hhhHHHHHHHHHHHhHH
Q 030572 77 FVGGFVLGGIIVGTLGC 93 (175)
Q Consensus 77 Fl~G~llGGaVGGvlGl 93 (175)
-|+||+-||--|.+-|.
T Consensus 5 AIAGfieggW~gmi~gw 21 (30)
T 2kxa_A 5 AIAGFIEGGWTGMIDGW 21 (30)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcCcccccccc
Confidence 46888888887777664
No 32
>1i5p_A Pesticidial crystal protein CRY2AA; helical bundle, beta prism, lectin-like beta sandwich, jelly roll, toxin; 2.20A {Bacillus thuringiensis serovarkurstaki} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Probab=23.50 E-value=29 Score=33.24 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=16.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhcc
Q 030572 130 KTRKILTEKIAQLNSAIDDVSAQLRT 155 (175)
Q Consensus 130 ~arr~Le~kIaqLN~AIddvr~QL~~ 155 (175)
.++..+..++.-|+..+++....+..
T Consensus 108 ~vrN~AiAeLqGLqn~lk~Yq~ALe~ 133 (633)
T 1i5p_A 108 DTLARVNAELIGLQANIREFNQQVDN 133 (633)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667777777775555544
No 33
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.92 E-value=1.6e+02 Score=19.00 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=20.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 030572 126 KALEKTRKILTEKIAQLNSAIDDVSAQL 153 (175)
Q Consensus 126 ~~iE~arr~Le~kIaqLN~AIddvr~QL 153 (175)
+.++.....|..+|.+|..-++..+++|
T Consensus 32 ~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 32 EDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577777778888888888877776665
No 34
>1tpx_A Prion protein, major prion protein; antibody, unknown function; 2.56A {Ovis aries} SCOP: d.6.1.1
Probab=22.73 E-value=9.5 Score=29.53 Aligned_cols=20 Identities=15% Similarity=0.316 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhHHhhcccc
Q 030572 80 GFVLGGIIVGTLGCVYAPQI 99 (175)
Q Consensus 80 G~llGGaVGGvlGlL~APR~ 99 (175)
++.+|.+|||+.|+.++.-.
T Consensus 5 aaaaGAvvGgl~Gy~lg~a~ 24 (121)
T 1tpx_A 5 AAAAGAVVGGLGGYMLGSAM 24 (121)
T ss_dssp ---------CCTTCEECCCC
T ss_pred hHHHhHHhhcchhHHHHhcc
Confidence 45567777777777776654
No 35
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=22.55 E-value=1.4e+02 Score=20.51 Aligned_cols=34 Identities=15% Similarity=0.205 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccc
Q 030572 123 DEEKALEKTRKILTEKIAQLNSAIDDVSAQLRTE 156 (175)
Q Consensus 123 dee~~iE~arr~Le~kIaqLN~AIddvr~QL~~~ 156 (175)
++-.......+.|.....+|++++++.++.|..-
T Consensus 53 ~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l~~a 86 (103)
T 4i0x_B 53 AAAAAYSQAHKEWMDAARELVEGLSQMEEAARTA 86 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888899999999999999988888765
No 36
>1nh2_B Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 PDB: 1ytf_B*
Probab=22.46 E-value=42 Score=22.09 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 030572 124 EEKALEKTRKILTEKIAQLNSA 145 (175)
Q Consensus 124 ee~~iE~arr~Le~kIaqLN~A 145 (175)
++..++.-++-|+.|+.|.+.|
T Consensus 30 de~vL~eLk~~We~KL~~s~va 51 (53)
T 1nh2_B 30 DEQTLQDLKNIWQKKLTETKVT 51 (53)
T ss_dssp CHHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHHHHHHcCCC
Confidence 4557888899999999998865
No 37
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=22.39 E-value=1.5e+02 Score=20.63 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=23.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhccc
Q 030572 126 KALEKTRKILTEKIAQLNSAIDDVSAQLRTE 156 (175)
Q Consensus 126 ~~iE~arr~Le~kIaqLN~AIddvr~QL~~~ 156 (175)
..++.-++.++++|++|+..++.....+...
T Consensus 78 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 108 (109)
T 1r8d_A 78 AALQSQKEILMKKKQRMDEMIQTIDRTLLSV 108 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677777788888888888888776665543
No 38
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=21.88 E-value=1e+02 Score=22.05 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=16.0
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q 030572 132 RKILTEKIAQLNSAIDDVSA 151 (175)
Q Consensus 132 rr~Le~kIaqLN~AIddvr~ 151 (175)
-..|++||++|+..+++..+
T Consensus 54 V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 54 VSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34588999999999998544
No 39
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=21.58 E-value=53 Score=26.20 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHhhcc
Q 030572 133 KILTEKIAQLNSAIDDVSAQLRT 155 (175)
Q Consensus 133 r~Le~kIaqLN~AIddvr~QL~~ 155 (175)
+.+.+++.+|++.+++.++++..
T Consensus 259 ~~~~~~~~~l~~~~~~l~~~l~~ 281 (285)
T 3rvy_A 259 DNINNEIIKLREEIVELKELIKT 281 (285)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 33555666666666666655543
No 40
>3heq_A Major prion protein; cell membrane, disease mutation, disulfide bond, glycoprotein, golgi apparatus, GPI-anchor, lipoprotein, membrane, polymorphism; 1.80A {Homo sapiens} PDB: 2lsb_A 2k1d_A 2lej_A 2lv1_A 2lft_A 1fkc_A 1fo7_A 3haf_A 3hj5_A 1qm0_A 1qm1_A 2kun_A 3hes_A 3her_A 1b10_A 2joh_A 2fj3_A 2jom_A 2l1h_A 2l39_A ...
Probab=21.54 E-value=12 Score=29.62 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHhHHhhccc
Q 030572 80 GFVLGGIIVGTLGCVYAPQ 98 (175)
Q Consensus 80 G~llGGaVGGvlGlL~APR 98 (175)
++..|.+|||+.|+.++.-
T Consensus 26 aAaAGAVvGGlgGy~lG~a 44 (142)
T 3heq_A 26 AAAAGAVVGGLGGYMLGSA 44 (142)
T ss_dssp -----------CCCEECCC
T ss_pred HHHhhhhhhccchHHHHhh
Confidence 4445555666666655543
No 41
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=21.15 E-value=70 Score=18.82 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=13.4
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 030572 133 KILTEKIAQLNSAIDDVS 150 (175)
Q Consensus 133 r~Le~kIaqLN~AIddvr 150 (175)
++|.+|-++|++.|++..
T Consensus 3 rrlkqknarlkqeiaale 20 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALE 20 (28)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHH
Confidence 457788888888888743
No 42
>1k04_A FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN four helical bundle forming A helix-exchange transferase; 1.95A {Homo sapiens} SCOP: a.24.14.1 PDB: 1k05_A 3b71_A 1ow6_A 1ow7_A 1ow8_A 1ktm_A 1qvx_A 1pv3_A 2ra7_A* 1k40_A
Probab=20.94 E-value=2.3e+02 Score=22.73 Aligned_cols=49 Identities=14% Similarity=0.246 Sum_probs=32.3
Q ss_pred chHHHHhhhhhhHHHHhhCCCcchhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 030572 99 ISKALAGAAADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVS 150 (175)
Q Consensus 99 ~~kel~~~l~d~k~~~~~~p~~~~dee~~iE~arr~Le~kIaqLN~AIddvr 150 (175)
+|-++|.++ ...-+-.|.+...+-+.+|++.+.|+.-.++|=.++.-+.
T Consensus 67 VGl~LR~Ll---~sVd~~~~~lp~s~~rEVema~k~L~kDM~eLis~mklaq 115 (162)
T 1k04_A 67 VGLALRTLL---ATVDETIPLLPASTHREIEMAQKLLNSDLGELINKMKLAQ 115 (162)
T ss_dssp HHHHHHHHH---HHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HhHhhhhhccCHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555 2222234555556667899999999988888888777654
No 43
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.92 E-value=1.5e+02 Score=19.22 Aligned_cols=30 Identities=33% Similarity=0.400 Sum_probs=23.9
Q ss_pred CcchhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 030572 119 KFIYDEEKALEKTRKILTEKIAQLNSAIDD 148 (175)
Q Consensus 119 ~~~~dee~~iE~arr~Le~kIaqLN~AIdd 148 (175)
.+..++-..+|+.-+-||+|++-|++..++
T Consensus 16 gfspeelaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 16 GFSPEELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555567899999999999999988765
No 44
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=20.87 E-value=77 Score=20.08 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=8.1
Q ss_pred hhhhHHHHHHHHHH
Q 030572 76 FFVGGFVLGGIIVG 89 (175)
Q Consensus 76 gFl~G~llGGaVGG 89 (175)
.|+..++.|++|-+
T Consensus 8 nFl~Sl~aG~vvvv 21 (39)
T 3arc_X 8 GFFIGLLSGAVVLG 21 (39)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46666666665433
No 45
>2qkg_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis} PDB: 3eb7_A
Probab=20.46 E-value=62 Score=30.07 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=7.5
Q ss_pred HHhHHHHHHHHHHHHHH
Q 030572 132 RKILTEKIAQLNSAIDD 148 (175)
Q Consensus 132 rr~Le~kIaqLN~AIdd 148 (175)
+..+...++-|+.++++
T Consensus 68 ~n~a~a~L~GL~~~l~~ 84 (589)
T 2qkg_A 68 RAKALAELEGLGNNYQL 84 (589)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444444
No 46
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=20.41 E-value=1.7e+02 Score=19.27 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=16.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q 030572 126 KALEKTRKILTEKIAQLNSAIDDV 149 (175)
Q Consensus 126 ~~iE~arr~Le~kIaqLN~AIddv 149 (175)
--+|.-.++||+.|+.|...|+..
T Consensus 20 lqlerdeqnlekiianlrdeiarl 43 (52)
T 3he5_B 20 LQLERDEQNLEKIIANLRDEIARL 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHhhHHHHHHHHHHHHHHH
Confidence 346666677777777777777653
No 47
>1ji6_A Pesticidial crystal protein CRY3BB; toxin; 2.40A {Bacillus thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Probab=20.37 E-value=60 Score=29.99 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=12.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhh
Q 030572 131 TRKILTEKIAQLNSAIDDVSAQL 153 (175)
Q Consensus 131 arr~Le~kIaqLN~AIddvr~QL 153 (175)
++..+...++-|+..+++....+
T Consensus 63 ~~~~a~~~l~gL~~~~~~Y~~al 85 (589)
T 1ji6_A 63 AKSKALAELQGLQNNFEDYVNAL 85 (589)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666544444
Done!