Query 030573
Match_columns 175
No_of_seqs 173 out of 1462
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 15:46:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 100.0 2E-33 4.3E-38 208.0 14.0 114 49-168 92-205 (205)
2 KOG0544 FKBP-type peptidyl-pro 100.0 2.8E-30 6.1E-35 167.7 12.0 106 59-168 2-108 (108)
3 TIGR03516 ppisom_GldI peptidyl 100.0 1.2E-28 2.5E-33 182.9 17.2 114 51-169 62-177 (177)
4 PRK11570 peptidyl-prolyl cis-t 100.0 6.8E-29 1.5E-33 188.3 15.7 114 49-168 93-206 (206)
5 KOG0549 FKBP-type peptidyl-pro 100.0 3.6E-28 7.7E-33 176.6 13.9 113 55-171 65-179 (188)
6 KOG0552 FKBP-type peptidyl-pro 100.0 2E-27 4.3E-32 179.9 12.8 109 54-168 116-226 (226)
7 PRK10902 FKBP-type peptidyl-pr 99.9 1.1E-26 2.5E-31 182.2 16.4 116 50-172 138-253 (269)
8 PF00254 FKBP_C: FKBP-type pep 99.9 1.1E-22 2.3E-27 136.5 11.1 91 72-165 4-94 (94)
9 PRK15095 FKBP-type peptidyl-pr 99.8 5.6E-19 1.2E-23 128.8 9.5 70 72-141 4-73 (156)
10 KOG0543 FKBP-type peptidyl-pro 99.8 1.6E-17 3.5E-22 134.5 13.8 109 55-170 81-192 (397)
11 COG1047 SlpA FKBP-type peptidy 99.7 6E-17 1.3E-21 118.3 9.2 70 72-141 2-71 (174)
12 PRK10737 FKBP-type peptidyl-pr 99.7 1.2E-16 2.6E-21 119.9 8.9 69 72-141 2-70 (196)
13 KOG0543 FKBP-type peptidyl-pro 99.3 1.1E-11 2.3E-16 100.9 6.8 81 66-165 1-82 (397)
14 TIGR00115 tig trigger factor. 99.3 6.3E-11 1.4E-15 98.9 11.5 92 71-174 145-236 (408)
15 PRK01490 tig trigger factor; P 99.2 2.8E-10 6.1E-15 95.8 12.1 92 71-174 156-247 (435)
16 COG0544 Tig FKBP-type peptidyl 99.1 1.3E-09 2.7E-14 91.6 10.3 90 73-174 158-247 (441)
17 KOG0545 Aryl-hydrocarbon recep 98.3 2.1E-07 4.5E-12 72.0 1.7 81 56-136 8-92 (329)
18 KOG0549 FKBP-type peptidyl-pro 97.9 9.6E-06 2.1E-10 59.8 3.4 37 105-141 1-37 (188)
19 PF05984 Cytomega_UL20A: Cytom 77.0 3 6.5E-05 27.0 2.7 25 4-28 1-26 (100)
20 COG5510 Predicted small secret 74.6 3.4 7.5E-05 23.2 2.2 22 4-25 2-23 (44)
21 PRK10081 entericidin B membran 74.2 3.7 8E-05 23.7 2.3 23 4-26 2-24 (48)
22 PF01346 FKBP_N: Domain amino 72.3 4.6 0.0001 27.8 3.0 19 46-64 106-124 (124)
23 TIGR01480 copper_res_A copper- 72.2 12 0.00026 33.2 6.1 25 63-87 66-94 (587)
24 PRK15396 murein lipoprotein; P 70.5 4.5 9.8E-05 25.9 2.3 24 4-27 1-24 (78)
25 PRK00226 greA transcription el 70.2 5.9 0.00013 28.7 3.3 24 112-135 122-145 (157)
26 PF15240 Pro-rich: Proline-ric 68.6 4.3 9.3E-05 30.2 2.2 19 9-27 1-19 (179)
27 PRK10540 lipoprotein; Provisio 60.7 14 0.00031 23.2 3.2 25 1-25 1-25 (72)
28 PHA02122 hypothetical protein 60.6 17 0.00037 21.6 3.3 20 74-94 39-58 (65)
29 TIGR01461 greB transcription e 59.4 21 0.00045 26.0 4.4 24 112-135 119-142 (156)
30 PRK05892 nucleoside diphosphat 58.5 36 0.00078 24.8 5.5 24 112-135 121-144 (158)
31 PF10518 TAT_signal: TAT (twin 57.9 19 0.0004 17.8 2.7 18 3-20 1-18 (26)
32 PRK05753 nucleoside diphosphat 54.2 37 0.00081 24.0 4.9 24 112-135 91-114 (137)
33 PF01272 GreA_GreB: Transcript 53.2 16 0.00036 22.9 2.7 24 112-135 42-65 (77)
34 PRK10672 rare lipoprotein A; P 52.8 41 0.00089 28.0 5.5 16 55-70 61-76 (361)
35 PF09610 Myco_arth_vir_N: Myco 52.4 14 0.00031 19.4 1.8 21 1-21 1-21 (33)
36 PRK13838 conjugal transfer pil 52.4 33 0.00072 25.4 4.6 12 71-82 49-60 (176)
37 PRK12699 flgH flagellar basal 50.6 84 0.0018 24.7 6.7 16 72-87 87-102 (246)
38 PRK11479 hypothetical protein; 50.5 43 0.00093 26.8 5.1 22 6-27 3-24 (274)
39 PF05688 DUF824: Salmonella re 50.4 46 0.001 19.1 3.9 36 71-111 7-42 (47)
40 PRK13165 cytochrome c-type bio 49.3 35 0.00075 25.0 4.1 11 77-87 89-99 (160)
41 TIGR01462 greA transcription e 48.4 58 0.0013 23.3 5.2 25 111-135 116-140 (151)
42 PRK13150 cytochrome c-type bio 48.1 35 0.00075 25.0 3.9 10 78-87 90-99 (159)
43 PRK01885 greB transcription el 47.9 33 0.00072 24.9 3.9 23 113-135 122-144 (157)
44 PRK13159 cytochrome c-type bio 45.4 46 0.00099 24.3 4.2 11 77-87 83-93 (155)
45 PRK10523 lipoprotein involved 45.3 1.5E+02 0.0032 23.2 8.2 24 4-28 2-25 (234)
46 PF09122 DUF1930: Domain of un 43.6 40 0.00086 20.6 3.0 22 114-135 35-56 (68)
47 PRK12788 flgH flagellar basal 40.1 1.2E+02 0.0026 23.7 6.0 16 72-87 74-89 (234)
48 PRK12407 flgH flagellar basal 39.0 1.6E+02 0.0034 22.8 6.5 16 72-87 64-79 (221)
49 COG4704 Uncharacterized protei 38.1 31 0.00067 24.6 2.3 21 1-21 1-21 (151)
50 PRK03002 prsA peptidylprolyl i 37.8 31 0.00067 27.5 2.6 23 109-131 188-210 (285)
51 cd01090 Creatinase Creatine am 37.7 1.1E+02 0.0024 23.3 5.6 53 70-129 74-135 (228)
52 COG0024 Map Methionine aminope 36.8 1.2E+02 0.0026 24.0 5.6 52 71-129 85-146 (255)
53 PRK11536 6-N-hydroxylaminopuri 35.3 32 0.00069 26.6 2.2 27 55-84 139-165 (223)
54 TIGR02925 cis_trans_EpsD pepti 35.3 74 0.0016 24.2 4.3 29 109-139 189-217 (232)
55 COG0782 Uncharacterized conser 35.0 1.1E+02 0.0024 22.0 4.9 23 112-134 115-137 (151)
56 PF07076 DUF1344: Protein of u 34.9 83 0.0018 19.1 3.5 40 52-93 17-56 (61)
57 PRK12450 foldase protein PrsA; 34.6 36 0.00078 27.5 2.6 36 104-139 194-232 (309)
58 TIGR03042 PS_II_psbQ_bact phot 34.6 45 0.00099 23.9 2.7 22 9-30 4-25 (142)
59 PF07803 GSG-1: GSG1-like prot 34.0 36 0.00077 23.5 2.0 18 5-22 5-22 (118)
60 COG2258 Uncharacterized protei 33.9 35 0.00076 26.2 2.2 28 56-86 137-164 (210)
61 cd01089 PA2G4-like Related to 33.7 1.7E+02 0.0037 22.2 6.1 52 71-129 81-146 (228)
62 PRK13254 cytochrome c-type bio 33.6 32 0.00069 24.8 1.9 8 78-85 83-90 (148)
63 PRK06005 flgA flagellar basal 31.5 2E+02 0.0044 20.8 6.9 20 1-20 1-20 (160)
64 PRK06342 transcription elongat 31.0 91 0.002 22.8 3.9 20 112-131 130-149 (160)
65 PRK09534 btuF corrinoid ABC tr 30.8 80 0.0017 26.0 4.0 16 1-16 1-16 (359)
66 PRK13884 conjugal transfer pep 30.0 1.7E+02 0.0036 21.7 5.3 23 55-82 38-60 (178)
67 PRK14720 transcript cleavage f 29.8 2E+02 0.0044 27.2 6.7 24 112-135 867-890 (906)
68 TIGR00501 met_pdase_II methion 29.4 1.5E+02 0.0033 23.7 5.4 53 70-129 72-130 (295)
69 cd01088 MetAP2 Methionine Amin 29.1 1.4E+02 0.0031 23.8 5.1 54 69-129 67-126 (291)
70 TIGR03850 bind_CPR_0540 carboh 28.4 76 0.0017 26.3 3.6 15 13-27 9-23 (437)
71 PRK09859 multidrug efflux syst 28.3 65 0.0014 26.7 3.2 12 68-79 78-89 (385)
72 PRK01326 prsA foldase protein 28.3 44 0.00094 27.0 2.0 23 110-132 197-219 (310)
73 PRK02998 prsA peptidylprolyl i 28.3 50 0.0011 26.3 2.4 23 109-131 186-208 (283)
74 PRK10510 putative outer membra 28.2 53 0.0011 25.2 2.4 22 4-25 1-22 (219)
75 PF10907 DUF2749: Protein of u 28.0 45 0.00098 20.5 1.6 14 4-17 1-14 (66)
76 PF08802 CytB6-F_Fe-S: Cytochr 27.7 81 0.0017 17.3 2.4 10 3-12 5-14 (39)
77 PF12389 Peptidase_M73: Camely 27.6 2.8E+02 0.006 21.1 6.5 17 4-20 5-21 (199)
78 PRK08671 methionine aminopepti 27.6 1.7E+02 0.0038 23.3 5.4 53 70-129 69-127 (291)
79 PLN00044 multi-copper oxidase- 26.5 1.6E+02 0.0035 26.3 5.4 34 54-87 38-78 (596)
80 PRK13616 lipoprotein LpqB; Pro 26.2 79 0.0017 28.2 3.4 22 4-25 3-24 (591)
81 PRK11548 outer membrane biogen 26.0 58 0.0013 22.1 2.1 9 58-66 70-78 (113)
82 COG2913 OlmA Outer membrane li 25.8 73 0.0016 23.0 2.6 24 4-27 3-26 (147)
83 PRK13613 lipoprotein LpqB; Pro 25.7 82 0.0018 28.1 3.4 12 15-26 18-29 (599)
84 PTZ00053 methionine aminopepti 25.5 1.3E+02 0.0028 26.1 4.5 51 71-128 232-288 (470)
85 TIGR00495 crvDNA_42K 42K curve 24.7 2E+02 0.0044 24.1 5.4 52 71-129 99-164 (389)
86 PF03100 CcmE: CcmE; InterPro 24.5 2.3E+02 0.005 19.7 4.9 11 1-11 1-11 (131)
87 COG2332 CcmE Cytochrome c-type 24.0 78 0.0017 22.9 2.4 10 78-87 84-93 (153)
88 COG4922 Uncharacterized protei 23.9 1.6E+02 0.0035 20.4 3.8 17 73-89 71-87 (129)
89 PF13627 LPAM_2: Prokaryotic l 23.7 93 0.002 15.1 1.9 13 15-27 6-18 (24)
90 COG4313 Protein involved in me 23.2 89 0.0019 25.3 2.9 24 1-24 1-24 (304)
91 PRK13792 lysozyme inhibitor; P 23.2 80 0.0017 22.2 2.3 18 10-27 5-22 (127)
92 PRK12897 methionine aminopepti 23.1 3.1E+02 0.0067 21.0 6.0 54 69-129 81-143 (248)
93 PF13786 DUF4179: Domain of un 22.5 1.8E+02 0.0039 18.4 3.9 30 53-87 63-92 (94)
94 TIGR02184 Myco_arth_vir_N Myco 22.5 57 0.0012 17.2 1.1 8 1-8 1-8 (33)
95 PRK13614 lipoprotein LpqB; Pro 21.8 80 0.0017 28.1 2.6 26 1-26 1-26 (573)
96 TIGR01165 cbiN cobalt transpor 21.7 1E+02 0.0022 20.4 2.4 10 1-11 1-10 (91)
97 COG4166 OppA ABC-type oligopep 21.7 1.2E+02 0.0027 26.6 3.8 7 19-25 21-27 (562)
98 PRK00059 prsA peptidylprolyl i 21.6 90 0.0019 25.2 2.7 21 110-130 251-271 (336)
99 PRK09810 entericidin A; Provis 21.6 93 0.002 17.3 1.9 7 20-26 15-21 (41)
100 TIGR02122 TRAP_TAXI TRAP trans 21.5 75 0.0016 25.0 2.2 23 4-26 1-24 (320)
101 COG4764 Uncharacterized protei 21.3 98 0.0021 22.8 2.5 21 7-27 3-23 (197)
102 PF09465 LBR_tudor: Lamin-B re 21.2 1.6E+02 0.0034 17.5 2.9 18 154-171 17-34 (55)
103 PF12276 DUF3617: Protein of u 20.9 95 0.002 22.1 2.5 12 76-87 102-113 (162)
104 COG0048 RpsL Ribosomal protein 20.8 1.9E+02 0.0042 20.2 3.8 28 55-82 62-89 (129)
105 PRK12896 methionine aminopepti 20.7 3.5E+02 0.0075 20.7 5.8 52 70-128 88-148 (255)
106 PRK04081 hypothetical protein; 20.5 3.2E+02 0.0069 20.8 5.1 27 1-27 1-30 (207)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-33 Score=208.02 Aligned_cols=114 Identities=40% Similarity=0.692 Sum_probs=106.0
Q ss_pred cCCCceecCCCeEEEEEEcCCCCCCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCCCcchhHHHHhcCCCCCcE
Q 030573 49 ENVPMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGK 128 (175)
Q Consensus 49 ~~~~~~~~~~G~~~~~~~~G~G~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~gmk~G~~ 128 (175)
+.....++++|++|++++.|+|..|..+|.|++||++++.||++||||+++++|+.|.+| ++|+||.++|.+|++|++
T Consensus 92 k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k 169 (205)
T COG0545 92 KEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGK 169 (205)
T ss_pred ccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCce
Confidence 457789999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEeec
Q 030573 129 RRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSLEYIP 168 (175)
Q Consensus 129 ~~~~ip~~~ayg~g~~~~~~~~~ip~~~~l~~~vel~~i~ 168 (175)
|+++|||++||| ..+.+ +.||||++|+|+|+|++|+
T Consensus 170 ~~l~IP~~laYG--~~g~~--g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 170 RKLTIPPELAYG--ERGVP--GVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred EEEEeCchhccC--cCCCC--CCCCCCCeEEEEEEEEecC
Confidence 999999999994 44443 3499999999999999974
No 2
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.8e-30 Score=167.66 Aligned_cols=106 Identities=34% Similarity=0.645 Sum_probs=98.3
Q ss_pred CeEEEEEEcCCCC-CCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCCCcchhHHHHhcCCCCCcEEEEEecCCC
Q 030573 59 GLQYKDIKVGQGP-SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPL 137 (175)
Q Consensus 59 G~~~~~~~~G~G~-~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~gmk~G~~~~~~ip~~~ 137 (175)
|+..+++.+|+|. .++.||.|++||++.+.||+.||||.+++.|+.|.+|.+++|.||++++..|.+|+++++.|+|++
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~ 81 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY 81 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence 6889999999995 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEEEEEEeec
Q 030573 138 AFPKGLVSAPGRPRVAPNSPVIFDVSLEYIP 168 (175)
Q Consensus 138 ayg~g~~~~~~~~~ip~~~~l~~~vel~~i~ 168 (175)
||| ..+. +..||||++|+|+|||+++.
T Consensus 82 aYG--~~G~--p~~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 82 AYG--PRGH--PGGIPPNATLVFDVELLKVN 108 (108)
T ss_pred ccC--CCCC--CCccCCCcEEEEEEEEEecC
Confidence 995 3442 45799999999999999874
No 3
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.96 E-value=1.2e-28 Score=182.91 Aligned_cols=114 Identities=26% Similarity=0.422 Sum_probs=102.5
Q ss_pred CCceecCCCeEEEEEEc--CCCCCCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCCCcchhHHHHhcCCCCCcE
Q 030573 51 VPMVTTESGLQYKDIKV--GQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGK 128 (175)
Q Consensus 51 ~~~~~~~~G~~~~~~~~--G~G~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~gmk~G~~ 128 (175)
..+.++++|++|+++++ |+|..|+.||.|++||++++.||++|+++++. .|+.|.+|.+++++||+++|.+|++|++
T Consensus 62 ~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~ 140 (177)
T TIGR03516 62 VKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGET 140 (177)
T ss_pred CCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCE
Confidence 56789999999999976 66778999999999999999999999999874 5999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEeecC
Q 030573 129 RRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSLEYIPG 169 (175)
Q Consensus 129 ~~~~ip~~~ayg~g~~~~~~~~~ip~~~~l~~~vel~~i~~ 169 (175)
++|+|||++|||. .+. .+.||||++|+|+|+|++|++
T Consensus 141 ~~~~iP~~~AYG~--~g~--~~~Ippns~L~f~IeL~~i~~ 177 (177)
T TIGR03516 141 ATFLFPSHKAYGY--YGD--QNKIGPNLPIISTVTLLNIKP 177 (177)
T ss_pred EEEEECHHHcCCC--CCC--CCCcCcCCcEEEEEEEEEecC
Confidence 9999999999953 333 346999999999999999964
No 4
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.96 E-value=6.8e-29 Score=188.26 Aligned_cols=114 Identities=33% Similarity=0.526 Sum_probs=105.0
Q ss_pred cCCCceecCCCeEEEEEEcCCCCCCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCCCcchhHHHHhcCCCCCcE
Q 030573 49 ENVPMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGK 128 (175)
Q Consensus 49 ~~~~~~~~~~G~~~~~~~~G~G~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~gmk~G~~ 128 (175)
+.....++++|++|+++++|+|..|+.+|.|.+||++++.||++|+|+|.++.|+.|.++ .+++||+++|.+|++|++
T Consensus 93 k~~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k 170 (206)
T PRK11570 93 KKEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSK 170 (206)
T ss_pred hcCCcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCE
Confidence 356789999999999999999999999999999999999999999999998899999997 799999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEeec
Q 030573 129 RRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSLEYIP 168 (175)
Q Consensus 129 ~~~~ip~~~ayg~g~~~~~~~~~ip~~~~l~~~vel~~i~ 168 (175)
++|+|||+++||+ .+. .+.|||+++|+|+|+|++|.
T Consensus 171 ~~~~IP~~lAYG~--~g~--~~~Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 171 WELTIPHELAYGE--RGA--GASIPPFSTLVFEVELLEIL 206 (206)
T ss_pred EEEEECHHHcCCC--CCC--CCCcCCCCeEEEEEEEEEEC
Confidence 9999999999954 332 34699999999999999984
No 5
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.6e-28 Score=176.59 Aligned_cols=113 Identities=33% Similarity=0.556 Sum_probs=98.8
Q ss_pred ecCCCeEEEEEEcCC--CCCCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCCCcchhHHHHhcCCCCCcEEEEE
Q 030573 55 TTESGLQYKDIKVGQ--GPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLY 132 (175)
Q Consensus 55 ~~~~G~~~~~~~~G~--G~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~gmk~G~~~~~~ 132 (175)
.+.+.++..+++.-. ..+.+.||.+.+||++.+.||++|||||.+++|+.|++|.+++|+||+++|.+|++||+|+++
T Consensus 65 ~~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~ 144 (188)
T KOG0549|consen 65 NPDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLI 144 (188)
T ss_pred CCCCceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEe
Confidence 344567777776633 345889999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEeecCCC
Q 030573 133 IPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSLEYIPGLE 171 (175)
Q Consensus 133 ip~~~ayg~g~~~~~~~~~ip~~~~l~~~vel~~i~~~~ 171 (175)
|||+++|| .++. ++.||++++|+|+|||+++...+
T Consensus 145 IPp~LgYG--~~G~--~~~IP~~A~LiFdiELv~i~~~~ 179 (188)
T KOG0549|consen 145 IPPHLGYG--ERGA--PPKIPGDAVLIFDIELVKIERGP 179 (188)
T ss_pred cCccccCc--cCCC--CCCCCCCeeEEEEEEEEEeecCC
Confidence 99999995 4444 34599999999999999998863
No 6
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2e-27 Score=179.91 Aligned_cols=109 Identities=43% Similarity=0.835 Sum_probs=100.8
Q ss_pred eecCCCeEEEEEEcCCCCCCCCCCEEEEEEEEEeC-CCcEEecccCCCccEE-EEeCCCCcchhHHHHhcCCCCCcEEEE
Q 030573 54 VTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIP-SGQIFDSSLEKGRPYI-FRVGSGQVVKGLDEGILTMKTGGKRRL 131 (175)
Q Consensus 54 ~~~~~G~~~~~~~~G~G~~~~~gd~V~v~y~~~~~-~g~~~~st~~~~~p~~-~~~g~~~~~~g~~~~l~gmk~G~~~~~ 131 (175)
.++++|++|+.++-|+|..+..|+.|.+||.+++. +|++||+++.. .|+. |.+|.+++|+||+.++.||++|++|+|
T Consensus 116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrv 194 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRV 194 (226)
T ss_pred eecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhccCCeeEE
Confidence 58899999999999999999999999999999997 99999999864 6888 999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEeec
Q 030573 132 YIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSLEYIP 168 (175)
Q Consensus 132 ~ip~~~ayg~g~~~~~~~~~ip~~~~l~~~vel~~i~ 168 (175)
+|||++|||+ .+. +.||||++|+|+|+|++|.
T Consensus 195 iIPp~lgYg~--~g~---~~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 195 IIPPELGYGK--KGV---PEIPPNSTLVFDVELLSVK 226 (226)
T ss_pred EeCccccccc--cCc---CcCCCCCcEEEEEEEEecC
Confidence 9999999953 333 4699999999999999874
No 7
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.95 E-value=1.1e-26 Score=182.15 Aligned_cols=116 Identities=36% Similarity=0.580 Sum_probs=106.2
Q ss_pred CCCceecCCCeEEEEEEcCCCCCCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCCCcchhHHHHhcCCCCCcEE
Q 030573 50 NVPMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKR 129 (175)
Q Consensus 50 ~~~~~~~~~G~~~~~~~~G~G~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~gmk~G~~~ 129 (175)
...+.++++|++|+++++|+|..|+.||.|.|||++++.||++|++++.++.|+.|.++ +++|||+++|.+|++|+++
T Consensus 138 ~~gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~ 215 (269)
T PRK10902 138 EKGVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKI 215 (269)
T ss_pred CCCcEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEE
Confidence 46788999999999999999999999999999999999999999999998889999997 7999999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEeecCCCC
Q 030573 130 RLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSLEYIPGLEA 172 (175)
Q Consensus 130 ~~~ip~~~ayg~g~~~~~~~~~ip~~~~l~~~vel~~i~~~~~ 172 (175)
+|+||++++||+ .+. +.||||++|+|+|+|++|++.++
T Consensus 216 ~l~IP~~laYG~--~g~---~gIppns~LvfeVeLl~V~~~~~ 253 (269)
T PRK10902 216 KLVIPPELAYGK--AGV---PGIPANSTLVFDVELLDVKPAPK 253 (269)
T ss_pred EEEECchhhCCC--CCC---CCCCCCCcEEEEEEEEEeccCcc
Confidence 999999999954 332 35999999999999999987654
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.89 E-value=1.1e-22 Score=136.54 Aligned_cols=91 Identities=40% Similarity=0.816 Sum_probs=82.3
Q ss_pred CCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCCCcchhHHHHhcCCCCCcEEEEEecCCCCCCCCCCCCCCCCC
Q 030573 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPR 151 (175)
Q Consensus 72 ~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~gmk~G~~~~~~ip~~~ayg~g~~~~~~~~~ 151 (175)
.++.||.|++||++++.+|++|++++..+.|+.|.+|.+++++||+++|.+|++|++++|+||++++||+ .+.. +..
T Consensus 4 ~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~--~~~~-~~~ 80 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGE--KGLE-PPK 80 (94)
T ss_dssp SBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTT--TTBC-TTT
T ss_pred cCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCc--cccC-CCC
Confidence 4899999999999999999999999888889999999999999999999999999999999999999964 3222 234
Q ss_pred CCCCCCeEEEEEEE
Q 030573 152 VAPNSPVIFDVSLE 165 (175)
Q Consensus 152 ip~~~~l~~~vel~ 165 (175)
||++++|+|+|+|+
T Consensus 81 ip~~~~l~f~Iell 94 (94)
T PF00254_consen 81 IPPNSTLVFEIELL 94 (94)
T ss_dssp BTTTSEEEEEEEEE
T ss_pred cCCCCeEEEEEEEC
Confidence 99999999999986
No 9
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.79 E-value=5.6e-19 Score=128.78 Aligned_cols=70 Identities=26% Similarity=0.502 Sum_probs=67.0
Q ss_pred CCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCCCcchhHHHHhcCCCCCcEEEEEecCCCCCCC
Q 030573 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLAFPK 141 (175)
Q Consensus 72 ~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~gmk~G~~~~~~ip~~~ayg~ 141 (175)
.++.|+.|++||++++.||++|++|+..+.|+.|.+|.+++++||+++|.+|++|++++|.|||++|||+
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~ 73 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGV 73 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCC
Confidence 5789999999999999999999999987889999999999999999999999999999999999999984
No 10
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.6e-17 Score=134.51 Aligned_cols=109 Identities=23% Similarity=0.381 Sum_probs=93.6
Q ss_pred ecCCCeEEEEEEcCCC--CCCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCC-CCcchhHHHHhcCCCCCcEEEE
Q 030573 55 TTESGLQYKDIKVGQG--PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGS-GQVVKGLDEGILTMKTGGKRRL 131 (175)
Q Consensus 55 ~~~~G~~~~~~~~G~G--~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~-~~~~~g~~~~l~gmk~G~~~~~ 131 (175)
..+.+|..+++++|.| ..|..|..|.+||.+++.++ +|+++. ..+.|..|. ..++.||+.+|..|++|+.+.|
T Consensus 81 l~Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~---~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v 156 (397)
T KOG0543|consen 81 LLDGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRE---LRFEFGEGEDIDVIEGLEIALRMMKVGEVALV 156 (397)
T ss_pred ccCCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccc---cceEEecCCccchhHHHHHHHHhcCccceEEE
Confidence 3489999999999999 56999999999999999766 777653 348888887 4799999999999999999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEeecCC
Q 030573 132 YIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSLEYIPGL 170 (175)
Q Consensus 132 ~ip~~~ayg~g~~~~~~~~~ip~~~~l~~~vel~~i~~~ 170 (175)
+|+|.++||+ ..+.++.||||++|.|+|+|+++..+
T Consensus 157 ~i~~~YayG~---~~~~~p~IPPnA~l~yEVeL~~f~~~ 192 (397)
T KOG0543|consen 157 TIDPKYAYGE---EGGEPPLIPPNATLLYEVELLDFELK 192 (397)
T ss_pred EeCcccccCC---CCCCCCCCCCCceEEEEEEEEeeecC
Confidence 9999999962 23345789999999999999999933
No 11
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=6e-17 Score=118.30 Aligned_cols=70 Identities=30% Similarity=0.476 Sum_probs=66.4
Q ss_pred CCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCCCcchhHHHHhcCCCCCcEEEEEecCCCCCCC
Q 030573 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLAFPK 141 (175)
Q Consensus 72 ~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~gmk~G~~~~~~ip~~~ayg~ 141 (175)
.++.||.|.+||++++.||++||+|.....|+.|.+|.+++++||+++|.||.+|++.++.|||+.|||+
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe 71 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGE 71 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCC
Confidence 4789999999999999999999999875679999999999999999999999999999999999999984
No 12
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.69 E-value=1.2e-16 Score=119.86 Aligned_cols=69 Identities=19% Similarity=0.297 Sum_probs=65.1
Q ss_pred CCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCCCcchhHHHHhcCCCCCcEEEEEecCCCCCCC
Q 030573 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLAFPK 141 (175)
Q Consensus 72 ~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~gmk~G~~~~~~ip~~~ayg~ 141 (175)
+++.++.|++||++++.||++|++|+. ..|+.|.+|.++++|+|+++|.+|++|++++|.|||+.|||+
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe 70 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQ 70 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCC
Confidence 478899999999999999999999976 579999999999999999999999999999999999999974
No 13
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.1e-11 Score=100.93 Aligned_cols=81 Identities=38% Similarity=0.705 Sum_probs=72.1
Q ss_pred EcCCCCC-CCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCCCcchhHHHHhcCCCCCcEEEEEecCCCCCCCCCC
Q 030573 66 KVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLAFPKGLV 144 (175)
Q Consensus 66 ~~G~G~~-~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~gmk~G~~~~~~ip~~~ayg~g~~ 144 (175)
++|+|.. |..||.|.+||++++.||+.||||.+ +.|+.|.+|.++++.+|+.++..|+. |+
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~--- 62 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK--------------GE--- 62 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccc--------------cc---
Confidence 4688876 89999999999999999999999988 78999999999999999999999998 21
Q ss_pred CCCCCCCCCCCCCeEEEEEEE
Q 030573 145 SAPGRPRVAPNSPVIFDVSLE 165 (175)
Q Consensus 145 ~~~~~~~ip~~~~l~~~vel~ 165 (175)
...+|.||++++|.|+|+++
T Consensus 63 -~~~pp~ip~~a~l~fe~el~ 82 (397)
T KOG0543|consen 63 -AGSPPKIPSNATLLFEVELL 82 (397)
T ss_pred -cCCCCCCCCCcceeeeeccc
Confidence 23367899999999999975
No 14
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.26 E-value=6.3e-11 Score=98.91 Aligned_cols=92 Identities=21% Similarity=0.430 Sum_probs=79.7
Q ss_pred CCCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCCCcchhHHHHhcCCCCCcEEEEEecCCCCCCCCCCCCCCCC
Q 030573 71 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRP 150 (175)
Q Consensus 71 ~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~gmk~G~~~~~~ip~~~ayg~g~~~~~~~~ 150 (175)
..++.||.|++||+++. +|+.++++. ..++.|.+|.+.+++||+++|.||++|+++.|.++.+..|+.
T Consensus 145 ~~~~~gD~V~v~~~~~~-dg~~~~~~~--~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~--------- 212 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI-DGEAFEGGK--AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHA--------- 212 (408)
T ss_pred cccCCCCEEEEEEEEEE-CCEECcCCC--CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCc---------
Confidence 35789999999999986 899988874 468999999999999999999999999999999998888842
Q ss_pred CCCCCCCeEEEEEEEeecCCCCCC
Q 030573 151 RVAPNSPVIFDVSLEYIPGLEADE 174 (175)
Q Consensus 151 ~ip~~~~l~~~vel~~i~~~~~~~ 174 (175)
.-.+|.++.|.|+|.+|+....++
T Consensus 213 ~~~~gk~~~f~v~i~~I~~~~~pe 236 (408)
T TIGR00115 213 EELAGKEATFKVTVKEVKEKELPE 236 (408)
T ss_pred ccCCCCeEEEEEEEEEeccCCCCC
Confidence 124689999999999998876554
No 15
>PRK01490 tig trigger factor; Provisional
Probab=99.19 E-value=2.8e-10 Score=95.76 Aligned_cols=92 Identities=21% Similarity=0.415 Sum_probs=79.1
Q ss_pred CCCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCCCcchhHHHHhcCCCCCcEEEEEecCCCCCCCCCCCCCCCC
Q 030573 71 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRP 150 (175)
Q Consensus 71 ~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~gmk~G~~~~~~ip~~~ayg~g~~~~~~~~ 150 (175)
..++.||.|++||+++. +|+.++++. ..++.|.+|.+++++||+++|.||++|+++.|.++.+..|+.
T Consensus 156 ~~~~~gD~V~vd~~~~~-~g~~~~~~~--~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~--------- 223 (435)
T PRK01490 156 RPAENGDRVTIDFVGSI-DGEEFEGGK--AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHA--------- 223 (435)
T ss_pred ccCCCCCEEEEEEEEEE-CCEECcCCC--CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcccccc---------
Confidence 34899999999999997 888888763 357999999999999999999999999999999988888842
Q ss_pred CCCCCCCeEEEEEEEeecCCCCCC
Q 030573 151 RVAPNSPVIFDVSLEYIPGLEADE 174 (175)
Q Consensus 151 ~ip~~~~l~~~vel~~i~~~~~~~ 174 (175)
.-.+|.++.|.|+|.+|+....++
T Consensus 224 ~~lagk~~~f~v~v~~V~~~~~pe 247 (435)
T PRK01490 224 EDLAGKEATFKVTVKEVKEKELPE 247 (435)
T ss_pred ccCCCCeEEEEEEEEEeccCCCCC
Confidence 124688999999999999876554
No 16
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.3e-09 Score=91.55 Aligned_cols=90 Identities=18% Similarity=0.396 Sum_probs=77.1
Q ss_pred CCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCCCcchhHHHHhcCCCCCcEEEEEecCCCCCCCCCCCCCCCCCC
Q 030573 73 PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRV 152 (175)
Q Consensus 73 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~gmk~G~~~~~~ip~~~ayg~g~~~~~~~~~i 152 (175)
++.||.|+|+|.++. ||..|.+... ..+.+.+|++++||||+.+|.||+.|++..|.+..+..|.. .-
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~fegg~a--e~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a---------~~ 225 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEGGKA--ENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHA---------EE 225 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccCccc--cCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccch---------hH
Confidence 899999999999976 8888887643 46999999999999999999999999999987777777732 13
Q ss_pred CCCCCeEEEEEEEeecCCCCCC
Q 030573 153 APNSPVIFDVSLEYIPGLEADE 174 (175)
Q Consensus 153 p~~~~l~~~vel~~i~~~~~~~ 174 (175)
.+|.+..|.|.|..|+....+|
T Consensus 226 LaGK~a~F~V~vkeVk~~elpE 247 (441)
T COG0544 226 LAGKEATFKVKVKEVKKRELPE 247 (441)
T ss_pred hCCCceEEEEEEEEEeecCCCC
Confidence 5688999999999999887755
No 17
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.1e-07 Score=71.96 Aligned_cols=81 Identities=16% Similarity=0.229 Sum_probs=71.6
Q ss_pred cCCCeEEEEEEcCCCCCC--CCCCEEEEEEEEEeC--CCcEEecccCCCccEEEEeCCCCcchhHHHHhcCCCCCcEEEE
Q 030573 56 TESGLQYKDIKVGQGPSP--PVGFQVAANYVAMIP--SGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRL 131 (175)
Q Consensus 56 ~~~G~~~~~~~~G~G~~~--~~gd~V~v~y~~~~~--~g~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~gmk~G~~~~~ 131 (175)
...|++.+++..|+|+-+ .+|..|.+||..... .++++|+|...|+|..+.+|..--.+-|+..|..|++++...|
T Consensus 8 ~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~EvaqF 87 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQF 87 (329)
T ss_pred cchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHHh
Confidence 456999999999999865 599999999998874 4678999999999999999998889999999999999999988
Q ss_pred EecCC
Q 030573 132 YIPGP 136 (175)
Q Consensus 132 ~ip~~ 136 (175)
++...
T Consensus 88 ~~d~~ 92 (329)
T KOG0545|consen 88 WCDTI 92 (329)
T ss_pred hhhhh
Confidence 87543
No 18
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=9.6e-06 Score=59.78 Aligned_cols=37 Identities=38% Similarity=0.717 Sum_probs=34.1
Q ss_pred EEeCCCCcchhHHHHhcCCCCCcEEEEEecCCCCCCC
Q 030573 105 FRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLAFPK 141 (175)
Q Consensus 105 ~~~g~~~~~~g~~~~l~gmk~G~~~~~~ip~~~ayg~ 141 (175)
|++|.+.+++++++++.||+.|+++++++||+++||.
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~ 37 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGE 37 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccc
Confidence 3578889999999999999999999999999999964
No 19
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=76.96 E-value=3 Score=26.97 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHh-hccccccC
Q 030573 4 VSRRDLIGLVLGVSTLI-LDSFDAKG 28 (175)
Q Consensus 4 ~~rr~~l~~~~~~~~~~-l~~~~~~~ 28 (175)
|.||.+++.++++.... |++.+..+
T Consensus 1 MaRRlwiLslLAVtLtVALAAPsQKs 26 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAAPSQKS 26 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhcccccc
Confidence 56787777666555443 44444433
No 20
>COG5510 Predicted small secreted protein [Function unknown]
Probab=74.61 E-value=3.4 Score=23.23 Aligned_cols=22 Identities=9% Similarity=0.196 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHHhhcccc
Q 030573 4 VSRRDLIGLVLGVSTLILDSFD 25 (175)
Q Consensus 4 ~~rr~~l~~~~~~~~~~l~~~~ 25 (175)
|+|.+++.+++.+++..+++|.
T Consensus 2 mk~t~l~i~~vll~s~llaaCN 23 (44)
T COG5510 2 MKKTILLIALVLLASTLLAACN 23 (44)
T ss_pred chHHHHHHHHHHHHHHHHHHhh
Confidence 5555555556666666677775
No 21
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=74.21 E-value=3.7 Score=23.69 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHhhccccc
Q 030573 4 VSRRDLIGLVLGVSTLILDSFDA 26 (175)
Q Consensus 4 ~~rr~~l~~~~~~~~~~l~~~~~ 26 (175)
|+|...+.+++.++++.+++|..
T Consensus 2 mKk~i~~i~~~l~~~~~l~~CnT 24 (48)
T PRK10081 2 VKKTIAAIFSVLVLSTVLTACNT 24 (48)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhh
Confidence 56666555566666666777764
No 22
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=72.27 E-value=4.6 Score=27.76 Aligned_cols=19 Identities=47% Similarity=0.553 Sum_probs=13.4
Q ss_pred hhhcCCCceecCCCeEEEE
Q 030573 46 KELENVPMVTTESGLQYKD 64 (175)
Q Consensus 46 ~~~~~~~~~~~~~G~~~~~ 64 (175)
.+....++.+++|||+|+|
T Consensus 106 ~n~k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 106 ENAKKEGVKTTESGLQYKV 124 (124)
T ss_dssp HHHTSTTEEE-TTS-EEEE
T ss_pred HHcCCCCCEECCCCCeeeC
Confidence 3345678999999999986
No 23
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=72.22 E-value=12 Score=33.20 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=16.2
Q ss_pred EEEEcCC--CCC--CCCCCEEEEEEEEEe
Q 030573 63 KDIKVGQ--GPS--PPVGFQVAANYVAMI 87 (175)
Q Consensus 63 ~~~~~G~--G~~--~~~gd~V~v~y~~~~ 87 (175)
.+...|. |.. ++.||.|.|+++-.+
T Consensus 66 ~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l 94 (587)
T TIGR01480 66 AITVNGSIPGPLLRWREGDTVRLRVTNTL 94 (587)
T ss_pred EEEECCccCCceEEEECCCEEEEEEEcCC
Confidence 3444553 544 679999999886443
No 24
>PRK15396 murein lipoprotein; Provisional
Probab=70.53 E-value=4.5 Score=25.92 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHhhcccccc
Q 030573 4 VSRRDLIGLVLGVSTLILDSFDAK 27 (175)
Q Consensus 4 ~~rr~~l~~~~~~~~~~l~~~~~~ 27 (175)
|+|+.+++.++.++.++|+.|+..
T Consensus 1 m~~~kl~l~av~ls~~LLaGCAs~ 24 (78)
T PRK15396 1 MNRTKLVLGAVILGSTLLAGCSSN 24 (78)
T ss_pred CchhHHHHHHHHHHHHHHHHcCCc
Confidence 566666655555555667777754
No 25
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=70.24 E-value=5.9 Score=28.68 Aligned_cols=24 Identities=17% Similarity=0.392 Sum_probs=20.3
Q ss_pred cchhHHHHhcCCCCCcEEEEEecC
Q 030573 112 VVKGLDEGILTMKTGGKRRLYIPG 135 (175)
Q Consensus 112 ~~~g~~~~l~gmk~G~~~~~~ip~ 135 (175)
+.-.+-.+|.|.++|+.+.+.+|.
T Consensus 122 ~~SPlG~aLlGk~~Gd~v~~~~p~ 145 (157)
T PRK00226 122 IESPIARALIGKKVGDTVEVTTPG 145 (157)
T ss_pred cCChHHHHHhCCCCCCEEEEEcCC
Confidence 445688999999999999997765
No 26
>PF15240 Pro-rich: Proline-rich
Probab=68.65 E-value=4.3 Score=30.22 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhcccccc
Q 030573 9 LIGLVLGVSTLILDSFDAK 27 (175)
Q Consensus 9 ~l~~~~~~~~~~l~~~~~~ 27 (175)
||+++|++++|+|+++-..
T Consensus 1 MLlVLLSvALLALSSAQ~~ 19 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQST 19 (179)
T ss_pred ChhHHHHHHHHHhhhcccc
Confidence 4667777777777654433
No 27
>PRK10540 lipoprotein; Provisional
Probab=60.74 E-value=14 Score=23.20 Aligned_cols=25 Identities=12% Similarity=0.119 Sum_probs=13.7
Q ss_pred CCchhhHHHHHHHHHHHHHhhcccc
Q 030573 1 MNLVSRRDLIGLVLGVSTLILDSFD 25 (175)
Q Consensus 1 m~~~~rr~~l~~~~~~~~~~l~~~~ 25 (175)
|-.++||.+...++.++++.++.|.
T Consensus 1 ~~~~~kr~~~~~~~~~~a~~L~gC~ 25 (72)
T PRK10540 1 MFVTSKKMAAAVLAITLAMSLSACS 25 (72)
T ss_pred CchHHHHHHHHHHHHHHHHHHhccC
Confidence 3445556555555555555566665
No 28
>PHA02122 hypothetical protein
Probab=60.56 E-value=17 Score=21.60 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=16.4
Q ss_pred CCCCEEEEEEEEEeCCCcEEe
Q 030573 74 PVGFQVAANYVAMIPSGQIFD 94 (175)
Q Consensus 74 ~~gd~V~v~y~~~~~~g~~~~ 94 (175)
..||.|.++|.++. ||+.|-
T Consensus 39 ~~gd~v~vn~e~~~-ng~l~i 58 (65)
T PHA02122 39 DDGDEVIVNFELVV-NGKLII 58 (65)
T ss_pred cCCCEEEEEEEEEE-CCEEEE
Confidence 37899999999986 787764
No 29
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=59.36 E-value=21 Score=25.95 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=20.1
Q ss_pred cchhHHHHhcCCCCCcEEEEEecC
Q 030573 112 VVKGLDEGILTMKTGGKRRLYIPG 135 (175)
Q Consensus 112 ~~~g~~~~l~gmk~G~~~~~~ip~ 135 (175)
..-.+..+|.|.++||.+.+.+|.
T Consensus 119 ~~SPlG~ALlGk~~GD~v~v~~p~ 142 (156)
T TIGR01461 119 IDSPLARALLKKEVGDEVVVNTPA 142 (156)
T ss_pred CCCHHHHHHcCCCCCCEEEEEcCC
Confidence 445688999999999999997665
No 30
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=58.46 E-value=36 Score=24.76 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=19.9
Q ss_pred cchhHHHHhcCCCCCcEEEEEecC
Q 030573 112 VVKGLDEGILTMKTGGKRRLYIPG 135 (175)
Q Consensus 112 ~~~g~~~~l~gmk~G~~~~~~ip~ 135 (175)
..-.+-.+|.|.++||.+.+..|.
T Consensus 121 ~~SPlG~ALlGk~vGD~v~v~~p~ 144 (158)
T PRK05892 121 ADSPLGQALAGHQAGDTVTYSTPQ 144 (158)
T ss_pred cCCHHHHHHhCCCCCCEEEEEcCC
Confidence 345688999999999999987665
No 31
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=57.87 E-value=19 Score=17.80 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=10.5
Q ss_pred chhhHHHHHHHHHHHHHh
Q 030573 3 LVSRRDLIGLVLGVSTLI 20 (175)
Q Consensus 3 ~~~rr~~l~~~~~~~~~~ 20 (175)
+++||.+|...+++.+..
T Consensus 1 ~~sRR~fLk~~~a~~a~~ 18 (26)
T PF10518_consen 1 NLSRRQFLKGGAAAAAAA 18 (26)
T ss_pred CCcHHHHHHHHHHHHHHH
Confidence 367888886544444333
No 32
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=54.21 E-value=37 Score=24.01 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=19.9
Q ss_pred cchhHHHHhcCCCCCcEEEEEecC
Q 030573 112 VVKGLDEGILTMKTGGKRRLYIPG 135 (175)
Q Consensus 112 ~~~g~~~~l~gmk~G~~~~~~ip~ 135 (175)
+.-.+-.||.|.++|+.+.+..|.
T Consensus 91 i~SPlG~ALlG~~~Gd~v~v~~p~ 114 (137)
T PRK05753 91 VLAPVGAALLGLSVGQSIDWPLPG 114 (137)
T ss_pred ccCHHHHHHcCCCCCCEEEEECCC
Confidence 455788999999999999986554
No 33
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=53.22 E-value=16 Score=22.87 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=18.4
Q ss_pred cchhHHHHhcCCCCCcEEEEEecC
Q 030573 112 VVKGLDEGILTMKTGGKRRLYIPG 135 (175)
Q Consensus 112 ~~~g~~~~l~gmk~G~~~~~~ip~ 135 (175)
..-.+-.||.|.++|+.+.+.+|.
T Consensus 42 ~~SPLG~ALlG~~~Gd~v~~~~~~ 65 (77)
T PF01272_consen 42 IDSPLGKALLGKKVGDEVEVELPG 65 (77)
T ss_dssp TTSHHHHHHTT-BTT-EEEEEETT
T ss_pred ecCHHHHHhcCCCCCCEEEEEeCC
Confidence 345688999999999999998775
No 34
>PRK10672 rare lipoprotein A; Provisional
Probab=52.79 E-value=41 Score=27.99 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=10.9
Q ss_pred ecCCCeEEEEEEcCCC
Q 030573 55 TTESGLQYKDIKVGQG 70 (175)
Q Consensus 55 ~~~~G~~~~~~~~G~G 70 (175)
..-.|..|++++...+
T Consensus 61 Y~v~G~~Y~~~~~~~~ 76 (361)
T PRK10672 61 YQRNGKSYKIVQDPSN 76 (361)
T ss_pred eEECCEEEEeCccCCC
Confidence 4566888888766543
No 35
>PF09610 Myco_arth_vir_N: Mycoplasma virulence signal region (Myco_arth_vir_N); InterPro: IPR011732 This entry represents the N-terminal region of a family of large, virulence-associated proteins in Mycoplasma arthritidis and smaller proteins in Mycoplasma capricolum. It includes a probable signal sequence or signal anchor, which, in most instances, has four consecutive Lys residues before the hydrophobic stretch.
Probab=52.38 E-value=14 Score=19.37 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=10.6
Q ss_pred CCchhhHHHHHHHHHHHHHhh
Q 030573 1 MNLVSRRDLIGLVLGVSTLIL 21 (175)
Q Consensus 1 m~~~~rr~~l~~~~~~~~~~l 21 (175)
|+.++++....++++..+.++
T Consensus 1 Ms~~KKKK~~Il~la~~a~l~ 21 (33)
T PF09610_consen 1 MSFLKKKKIKILTLALTASLL 21 (33)
T ss_pred CchhhhhhhhhhhHHHHHHHH
Confidence 666666554444444444443
No 36
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=52.37 E-value=33 Score=25.41 Aligned_cols=12 Identities=25% Similarity=0.014 Sum_probs=10.3
Q ss_pred CCCCCCCEEEEE
Q 030573 71 PSPPVGFQVAAN 82 (175)
Q Consensus 71 ~~~~~gd~V~v~ 82 (175)
..++.||.|.++
T Consensus 49 ~~~~rGDiVvf~ 60 (176)
T PRK13838 49 RPVAVGDLVFIC 60 (176)
T ss_pred CCCCCCcEEEEE
Confidence 568999999987
No 37
>PRK12699 flgH flagellar basal body L-ring protein; Reviewed
Probab=50.57 E-value=84 Score=24.74 Aligned_cols=16 Identities=6% Similarity=0.011 Sum_probs=13.5
Q ss_pred CCCCCCEEEEEEEEEe
Q 030573 72 SPPVGFQVAANYVAMI 87 (175)
Q Consensus 72 ~~~~gd~V~v~y~~~~ 87 (175)
.-+.||.|+|......
T Consensus 87 A~~VGDiiTV~i~E~t 102 (246)
T PRK12699 87 ARQIGDTIIVLLNEKT 102 (246)
T ss_pred cccCCCEEEEEEEEec
Confidence 3679999999998876
No 38
>PRK11479 hypothetical protein; Provisional
Probab=50.51 E-value=43 Score=26.80 Aligned_cols=22 Identities=14% Similarity=0.054 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHhhcccccc
Q 030573 6 RRDLIGLVLGVSTLILDSFDAK 27 (175)
Q Consensus 6 rr~~l~~~~~~~~~~l~~~~~~ 27 (175)
++.+.+.++...++++++|+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~c~~~ 24 (274)
T PRK11479 3 KPKAYCRLLLPWLLLLSACTVD 24 (274)
T ss_pred hhHHHHHHHHHHHHHHhhhccc
Confidence 3444444555555556666654
No 39
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=50.37 E-value=46 Score=19.07 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=27.7
Q ss_pred CCCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCCC
Q 030573 71 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ 111 (175)
Q Consensus 71 ~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~~ 111 (175)
.+++.|+.|.+..+.++.+|..+. +.+|.+..|.+.
T Consensus 7 akaK~Ge~I~ltVt~kda~G~pv~-----n~~f~l~r~~~~ 42 (47)
T PF05688_consen 7 AKAKVGETIPLTVTVKDANGNPVP-----NAPFTLTRGDAK 42 (47)
T ss_pred hheecCCeEEEEEEEECCCCCCcC-----CceEEEEecCcc
Confidence 347899999999999998887763 347888777543
No 40
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=49.33 E-value=35 Score=25.03 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=6.6
Q ss_pred CEEEEEEEEEe
Q 030573 77 FQVAANYVAMI 87 (175)
Q Consensus 77 d~V~v~y~~~~ 87 (175)
..|.|+|++-+
T Consensus 89 ~~v~V~Y~Gil 99 (160)
T PRK13165 89 GSVTVTYEGIL 99 (160)
T ss_pred eEEEEEEcccC
Confidence 34666666654
No 41
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=48.39 E-value=58 Score=23.33 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=20.9
Q ss_pred CcchhHHHHhcCCCCCcEEEEEecC
Q 030573 111 QVVKGLDEGILTMKTGGKRRLYIPG 135 (175)
Q Consensus 111 ~~~~g~~~~l~gmk~G~~~~~~ip~ 135 (175)
.+.-.+-.+|.|.++|+.+.+..|.
T Consensus 116 S~~SPlG~ALlG~~~Gd~v~v~~p~ 140 (151)
T TIGR01462 116 SIDSPLGKALIGKKVGDVVEVQTPK 140 (151)
T ss_pred cCCCHHHHHHcCCCCCCEEEEEeCC
Confidence 3455789999999999999997665
No 42
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=48.10 E-value=35 Score=25.00 Aligned_cols=10 Identities=20% Similarity=0.564 Sum_probs=6.6
Q ss_pred EEEEEEEEEe
Q 030573 78 QVAANYVAMI 87 (175)
Q Consensus 78 ~V~v~y~~~~ 87 (175)
.|.|.|++-+
T Consensus 90 ~v~V~Y~Gil 99 (159)
T PRK13150 90 SVTVSYEGIL 99 (159)
T ss_pred EEEEEEeccC
Confidence 5677777654
No 43
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=47.89 E-value=33 Score=24.90 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=19.8
Q ss_pred chhHHHHhcCCCCCcEEEEEecC
Q 030573 113 VKGLDEGILTMKTGGKRRLYIPG 135 (175)
Q Consensus 113 ~~g~~~~l~gmk~G~~~~~~ip~ 135 (175)
.-.+-.+|.|.++|+.+.+.+|.
T Consensus 122 ~SPlG~ALlGk~vGd~v~v~~p~ 144 (157)
T PRK01885 122 DSPMARALLKKEVGDEVTVNTPA 144 (157)
T ss_pred cCHHHHHHhCCCCCCEEEEEcCC
Confidence 45688999999999999997765
No 44
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=45.43 E-value=46 Score=24.27 Aligned_cols=11 Identities=9% Similarity=0.362 Sum_probs=7.1
Q ss_pred CEEEEEEEEEe
Q 030573 77 FQVAANYVAMI 87 (175)
Q Consensus 77 d~V~v~y~~~~ 87 (175)
..|.|+|++-+
T Consensus 83 ~~v~V~Y~Gil 93 (155)
T PRK13159 83 AATQVEYTGIL 93 (155)
T ss_pred cEEEEEEccCC
Confidence 35677777654
No 45
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=45.29 E-value=1.5e+02 Score=23.21 Aligned_cols=24 Identities=8% Similarity=0.220 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHHhhccccccC
Q 030573 4 VSRRDLIGLVLGVSTLILDSFDAKG 28 (175)
Q Consensus 4 ~~rr~~l~~~~~~~~~~l~~~~~~~ 28 (175)
|+|. ++.+++++.+++|..|....
T Consensus 2 mkk~-~~~~~~a~~l~~l~gC~~~~ 25 (234)
T PRK10523 2 MKKA-IITALAAAGLFTLMGCNNRA 25 (234)
T ss_pred chHH-HHHHHHHHHHHHhhccCCcc
Confidence 3444 55556666666677777554
No 46
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=43.60 E-value=40 Score=20.64 Aligned_cols=22 Identities=14% Similarity=0.436 Sum_probs=17.2
Q ss_pred hhHHHHhcCCCCCcEEEEEecC
Q 030573 114 KGLDEGILTMKTGGKRRLYIPG 135 (175)
Q Consensus 114 ~g~~~~l~gmk~G~~~~~~ip~ 135 (175)
+.+..++..|+.||++.++.-+
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS 56 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKS 56 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETT
T ss_pred HHHHHHHHHhhcCceeEEEEec
Confidence 4688899999999999998765
No 47
>PRK12788 flgH flagellar basal body L-ring protein; Reviewed
Probab=40.06 E-value=1.2e+02 Score=23.72 Aligned_cols=16 Identities=6% Similarity=-0.087 Sum_probs=13.5
Q ss_pred CCCCCCEEEEEEEEEe
Q 030573 72 SPPVGFQVAANYVAMI 87 (175)
Q Consensus 72 ~~~~gd~V~v~y~~~~ 87 (175)
.-+.||.|+|......
T Consensus 74 A~~VGDIlTV~I~E~~ 89 (234)
T PRK12788 74 ASRTGDLLTVTISMND 89 (234)
T ss_pred cccCCCeEEEEEEEec
Confidence 3679999999998875
No 48
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=38.98 E-value=1.6e+02 Score=22.81 Aligned_cols=16 Identities=13% Similarity=-0.091 Sum_probs=13.4
Q ss_pred CCCCCCEEEEEEEEEe
Q 030573 72 SPPVGFQVAANYVAMI 87 (175)
Q Consensus 72 ~~~~gd~V~v~y~~~~ 87 (175)
.-+.||.|+|+.....
T Consensus 64 A~~VGDiiTV~i~E~t 79 (221)
T PRK12407 64 AYRVGDILTVILDEST 79 (221)
T ss_pred ccCCCCEEEEEEEEec
Confidence 3679999999998875
No 49
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.05 E-value=31 Score=24.58 Aligned_cols=21 Identities=38% Similarity=0.373 Sum_probs=12.6
Q ss_pred CCchhhHHHHHHHHHHHHHhh
Q 030573 1 MNLVSRRDLIGLVLGVSTLIL 21 (175)
Q Consensus 1 m~~~~rr~~l~~~~~~~~~~l 21 (175)
|+.|.||++.++++++..+++
T Consensus 1 m~~~~~~~l~Ll~aa~sL~~~ 21 (151)
T COG4704 1 MLNISRRRLFLLAAALSLVSL 21 (151)
T ss_pred CccHHHHHHHHHHHHHHHHhH
Confidence 777877776665444444444
No 50
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=37.77 E-value=31 Score=27.52 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=19.3
Q ss_pred CCCcchhHHHHhcCCCCCcEEEE
Q 030573 109 SGQVVKGLDEGILTMKTGGKRRL 131 (175)
Q Consensus 109 ~~~~~~g~~~~l~gmk~G~~~~~ 131 (175)
.+.+.|.|..++..|++|+....
T Consensus 188 ~~~l~p~~~~a~~~L~~GevS~p 210 (285)
T PRK03002 188 SGRMAPEFETAAYKLKVGQISNP 210 (285)
T ss_pred cccCCHHHHHHHHcCCCCCcCCc
Confidence 34788999999999999997664
No 51
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=37.72 E-value=1.1e+02 Score=23.35 Aligned_cols=53 Identities=17% Similarity=0.148 Sum_probs=33.2
Q ss_pred CCCCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCCC---------cchhHHHHhcCCCCCcEE
Q 030573 70 GPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ---------VVKGLDEGILTMKTGGKR 129 (175)
Q Consensus 70 G~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~~---------~~~g~~~~l~gmk~G~~~ 129 (175)
...+++||.|.+++-... +|-..|.+ .+|.+|... +..+.+.++..+|+|-+.
T Consensus 74 ~r~l~~GD~v~~d~g~~~-~GY~ad~~------RT~~vG~~~~~~~~~~~~~~ea~~~~~~~~rpG~~~ 135 (228)
T cd01090 74 NRKVQRGDILSLNCFPMI-AGYYTALE------RTLFLDEVSDAHLKIWEANVAVHERGLELIKPGARC 135 (228)
T ss_pred CcccCCCCEEEEEEeEEE-CCEeeeeE------EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 345899999999988764 66543332 566666321 234555566677777664
No 52
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=36.82 E-value=1.2e+02 Score=24.05 Aligned_cols=52 Identities=29% Similarity=0.313 Sum_probs=36.2
Q ss_pred CCCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCCC------cc----hhHHHHhcCCCCCcEE
Q 030573 71 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ------VV----KGLDEGILTMKTGGKR 129 (175)
Q Consensus 71 ~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~~------~~----~g~~~~l~gmk~G~~~ 129 (175)
...++||.|.+++.... ||-.-|++ .+|.+|... ++ .+|+.++..+++|-+.
T Consensus 85 ~vlk~GDiv~IDvg~~~-dG~~~Dsa------~T~~vg~~~~~~~~~L~~~t~eal~~~I~~vkpG~~l 146 (255)
T COG0024 85 KVLKEGDIVKIDVGAHI-DGYIGDTA------ITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGARL 146 (255)
T ss_pred cccCCCCEEEEEEEEEE-CCeeeeEE------EEEECCCCChHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 44899999999999876 78766654 677888321 22 4566667777777654
No 53
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=35.33 E-value=32 Score=26.62 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=21.1
Q ss_pred ecCCCeEEEEEEcCCCCCCCCCCEEEEEEE
Q 030573 55 TTESGLQYKDIKVGQGPSPPVGFQVAANYV 84 (175)
Q Consensus 55 ~~~~G~~~~~~~~G~G~~~~~gd~V~v~y~ 84 (175)
+..+|.+|+++++|. ++.||.|++--.
T Consensus 139 ~g~~G~Y~RVL~~G~---V~~GD~v~l~~r 165 (223)
T PRK11536 139 SGKCGWLYRVIAPGK---VSADAPLELVSR 165 (223)
T ss_pred hCCcEEEEEEECCcE---EcCCCEEEEEeC
Confidence 345699999999986 788888777544
No 54
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=35.27 E-value=74 Score=24.18 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=22.1
Q ss_pred CCCcchhHHHHhcCCCCCcEEEEEecCCCCC
Q 030573 109 SGQVVKGLDEGILTMKTGGKRRLYIPGPLAF 139 (175)
Q Consensus 109 ~~~~~~g~~~~l~gmk~G~~~~~~ip~~~ay 139 (175)
.+++.+.|.+++..|++|+.. . |....+|
T Consensus 189 ~~~l~~~~~~a~~~l~~G~is-~-v~s~~G~ 217 (232)
T TIGR02925 189 AEQLPAEILAVLAKLKPGAPL-V-VQGPNNV 217 (232)
T ss_pred hhhCCHHHHHHHHhCCCCCeE-E-eecCCce
Confidence 458899999999999999985 3 5444444
No 55
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=35.04 E-value=1.1e+02 Score=22.01 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=19.5
Q ss_pred cchhHHHHhcCCCCCcEEEEEec
Q 030573 112 VVKGLDEGILTMKTGGKRRLYIP 134 (175)
Q Consensus 112 ~~~g~~~~l~gmk~G~~~~~~ip 134 (175)
..-.+..+|.|.++|+.+.+..|
T Consensus 115 ~~SPig~aLlGk~vGd~v~v~~p 137 (151)
T COG0782 115 VDSPLGRALLGKKVGDTVEVNTP 137 (151)
T ss_pred ccCHHHHHHhCCCCCCEEEEecC
Confidence 44568899999999999999766
No 56
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=34.86 E-value=83 Score=19.14 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=28.5
Q ss_pred CceecCCCeEEEEEEcCCCCCCCCCCEEEEEEEEEeCCCcEE
Q 030573 52 PMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIF 93 (175)
Q Consensus 52 ~~~~~~~G~~~~~~~~G~G~~~~~gd~V~v~y~~~~~~g~~~ 93 (175)
-+.++++|=.|+.-.+=.=+.+++|..|.|+|... +|+.+
T Consensus 17 ~titLdDGksy~lp~ef~~~~L~~G~kV~V~yd~~--~gk~v 56 (61)
T PF07076_consen 17 MTITLDDGKSYKLPEEFDFDGLKPGMKVVVFYDEV--DGKRV 56 (61)
T ss_pred eEEEecCCCEEECCCcccccccCCCCEEEEEEEcc--CCcEE
Confidence 35677888888754444555699999999999865 45443
No 57
>PRK12450 foldase protein PrsA; Reviewed
Probab=34.59 E-value=36 Score=27.51 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=26.0
Q ss_pred EEEeCCCCcchhHHHHhcCCCCCcEEEEEe---cCCCCC
Q 030573 104 IFRVGSGQVVKGLDEGILTMKTGGKRRLYI---PGPLAF 139 (175)
Q Consensus 104 ~~~~g~~~~~~g~~~~l~gmk~G~~~~~~i---p~~~ay 139 (175)
.|.-|.+++.+.|.+++..|++|+...++- |-...|
T Consensus 194 ~f~~~~~~l~~ef~~aa~~Lk~GevS~~i~~~~pv~t~~ 232 (309)
T PRK12450 194 TFDSGETTLPAEVVRAASGLKEGNRSEIITALDPATSKR 232 (309)
T ss_pred cccCCCCCCCHHHHHHHHcCCCCCccccccCCCccccCC
Confidence 344445579999999999999999866542 444444
No 58
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=34.56 E-value=45 Score=23.91 Aligned_cols=22 Identities=27% Similarity=0.221 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhccccccCCC
Q 030573 9 LIGLVLGVSTLILDSFDAKGAG 30 (175)
Q Consensus 9 ~l~~~~~~~~~~l~~~~~~~~~ 30 (175)
++.++++++++++.+|+.....
T Consensus 4 ~~s~~Lv~~~~~Lvsc~~p~~~ 25 (142)
T TIGR03042 4 LASLLLVLLLTFLVSCSGPAAA 25 (142)
T ss_pred HHHHHHHHHHHHHHHcCCCccc
Confidence 4444444444456666654443
No 59
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=33.96 E-value=36 Score=23.54 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHHhhc
Q 030573 5 SRRDLIGLVLGVSTLILD 22 (175)
Q Consensus 5 ~rr~~l~~~~~~~~~~l~ 22 (175)
++|.+|.+++..+|++++
T Consensus 5 ~~Ra~Ls~~ln~LAL~~S 22 (118)
T PF07803_consen 5 RQRALLSLILNLLALAFS 22 (118)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 445455555555555543
No 60
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.87 E-value=35 Score=26.17 Aligned_cols=28 Identities=11% Similarity=0.042 Sum_probs=22.4
Q ss_pred cCCCeEEEEEEcCCCCCCCCCCEEEEEEEEE
Q 030573 56 TESGLQYKDIKVGQGPSPPVGFQVAANYVAM 86 (175)
Q Consensus 56 ~~~G~~~~~~~~G~G~~~~~gd~V~v~y~~~ 86 (175)
.-+|++|+++++|. +..||.+++-+...
T Consensus 137 G~~G~y~RVL~~G~---v~~gD~l~l~~r~~ 164 (210)
T COG2258 137 GRTGWYARVLEEGK---VRAGDPLKLIPRPS 164 (210)
T ss_pred CcccEEEEEcccce---ecCCCceEEecCCC
Confidence 34689999999986 78888888877654
No 61
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=33.74 E-value=1.7e+02 Score=22.15 Aligned_cols=52 Identities=17% Similarity=0.154 Sum_probs=33.9
Q ss_pred CCCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCCC-------c-------chhHHHHhcCCCCCcEE
Q 030573 71 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ-------V-------VKGLDEGILTMKTGGKR 129 (175)
Q Consensus 71 ~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~~-------~-------~~g~~~~l~gmk~G~~~ 129 (175)
..+++||.|.+++-... +|-.-|.+ .+|.+|... . ..+.+.++..+|+|-+.
T Consensus 81 ~~l~~Gd~v~iD~g~~~-~GY~sD~t------RT~~vG~~~~~~~~~~~~~~~~~~~ea~~~~~~~~kpG~~~ 146 (228)
T cd01089 81 YTLKDGDVVKIDLGCHI-DGYIAVVA------HTIVVGAEAETPVTGKKADVIAAAHYALEAALRLLRPGNQN 146 (228)
T ss_pred cccCCCCEEEEEEEEEE-CCEEEEEE------EEEEeCCcCccccchHHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 45899999999987765 66544433 556666421 1 23456667778888764
No 62
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=33.57 E-value=32 Score=24.84 Aligned_cols=8 Identities=25% Similarity=0.414 Sum_probs=3.4
Q ss_pred EEEEEEEE
Q 030573 78 QVAANYVA 85 (175)
Q Consensus 78 ~V~v~y~~ 85 (175)
.+.|+|.+
T Consensus 83 ~i~V~Y~G 90 (148)
T PRK13254 83 TVPVVYTG 90 (148)
T ss_pred EEEEEECC
Confidence 34444444
No 63
>PRK06005 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=31.55 E-value=2e+02 Score=20.84 Aligned_cols=20 Identities=5% Similarity=0.047 Sum_probs=10.8
Q ss_pred CCchhhHHHHHHHHHHHHHh
Q 030573 1 MNLVSRRDLIGLVLGVSTLI 20 (175)
Q Consensus 1 m~~~~rr~~l~~~~~~~~~~ 20 (175)
|.+|+.+.+++.+..++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (160)
T PRK06005 1 MARMRAISALARLALAGAFL 20 (160)
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 56777776655444333333
No 64
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=31.04 E-value=91 Score=22.75 Aligned_cols=20 Identities=10% Similarity=0.177 Sum_probs=17.2
Q ss_pred cchhHHHHhcCCCCCcEEEE
Q 030573 112 VVKGLDEGILTMKTGGKRRL 131 (175)
Q Consensus 112 ~~~g~~~~l~gmk~G~~~~~ 131 (175)
+.-.+-.+|.|.++|+.+.+
T Consensus 130 ~~SPlG~ALlGk~vGD~V~v 149 (160)
T PRK06342 130 YVSPVARALMGKAVGDVVSV 149 (160)
T ss_pred ccCHHHHHHcCCCCCCEEEE
Confidence 34568899999999999987
No 65
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=30.81 E-value=80 Score=26.01 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=10.5
Q ss_pred CCchhhHHHHHHHHHH
Q 030573 1 MNLVSRRDLIGLVLGV 16 (175)
Q Consensus 1 m~~~~rr~~l~~~~~~ 16 (175)
|..|||+.++++++++
T Consensus 1 ~~~~~~~~~~~~~~~~ 16 (359)
T PRK09534 1 MHRMRFRSLVIVALAV 16 (359)
T ss_pred CCcchhHHHHHHHHHH
Confidence 6778888766544444
No 66
>PRK13884 conjugal transfer peptidase TraF; Provisional
Probab=29.96 E-value=1.7e+02 Score=21.69 Aligned_cols=23 Identities=17% Similarity=0.158 Sum_probs=16.4
Q ss_pred ecCCCeEEEEEEcCCCCCCCCCCEEEEE
Q 030573 55 TTESGLQYKDIKVGQGPSPPVGFQVAAN 82 (175)
Q Consensus 55 ~~~~G~~~~~~~~G~G~~~~~gd~V~v~ 82 (175)
..|-|++... ...++.||.|.+.
T Consensus 38 S~P~glY~~~-----~~~~~~Gd~V~f~ 60 (178)
T PRK13884 38 SIPVGLYWTS-----SAPVEKGAYVLFC 60 (178)
T ss_pred CCcceEEEEe-----CCCCCCCCEEEEe
Confidence 4566777752 3368999999986
No 67
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=29.79 E-value=2e+02 Score=27.20 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.5
Q ss_pred cchhHHHHhcCCCCCcEEEEEecC
Q 030573 112 VVKGLDEGILTMKTGGKRRLYIPG 135 (175)
Q Consensus 112 ~~~g~~~~l~gmk~G~~~~~~ip~ 135 (175)
..-.+..||.|.++||.+.+.+|.
T Consensus 867 ~~SPLGkALLGkkvGD~V~v~~P~ 890 (906)
T PRK14720 867 YQSPLGKSLLGKKEGDSLEFVIND 890 (906)
T ss_pred CCCHHHHHHcCCCCCCEEEEEECC
Confidence 445688999999999999998764
No 68
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=29.42 E-value=1.5e+02 Score=23.66 Aligned_cols=53 Identities=19% Similarity=0.203 Sum_probs=33.8
Q ss_pred CCCCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCC--Cc----chhHHHHhcCCCCCcEE
Q 030573 70 GPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG--QV----VKGLDEGILTMKTGGKR 129 (175)
Q Consensus 70 G~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~--~~----~~g~~~~l~gmk~G~~~ 129 (175)
...+++||.|.+++-... ||-..|.+ .+|.+|.. .+ ..+++.++..+++|-+.
T Consensus 72 ~~~l~~GDvV~iD~G~~~-dGY~aD~a------rT~~vG~~~~~l~~a~~~A~~aai~~~kPGv~~ 130 (295)
T TIGR00501 72 KTVFKDGDVVKLDLGAHV-DGYIADTA------ITVDLGDQYDNLVKAAKDALYTAIKEIRAGVRV 130 (295)
T ss_pred CccCCCCCEEEEEEeEEE-CCEEEEEE------EEEEeCcHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 345899999999987654 77655544 55666642 22 23455566667777654
No 69
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=29.06 E-value=1.4e+02 Score=23.76 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=34.3
Q ss_pred CCCCCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCC--C----cchhHHHHhcCCCCCcEE
Q 030573 69 QGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG--Q----VVKGLDEGILTMKTGGKR 129 (175)
Q Consensus 69 ~G~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~--~----~~~g~~~~l~gmk~G~~~ 129 (175)
+...+++||.|.++.-... ||-..|.+ .+|.+|.. . ...+++.++..+++|-+.
T Consensus 67 d~~~l~~GDvV~iD~G~~~-dGY~sD~a------rT~~vg~~~~~l~ea~~~A~~~ai~~ikPG~~~ 126 (291)
T cd01088 67 DDTVLKEGDVVKLDFGAHV-DGYIADSA------FTVDFDPKYDDLLEAAKEALNAAIKEAGPDVRL 126 (291)
T ss_pred CCcccCCCCEEEEEEEEEE-CCEEEEEE------EEEecChhHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 3356899999999987654 77555443 45555532 1 234566677777777664
No 70
>TIGR03850 bind_CPR_0540 carbohydrate ABC transporter substrate-binding protein, CPR_0540 family. Members of this protein are the substrate-binding protein of a predicted carbohydrate transporter operon, together with permease subunits of ABC transporter homology families. This substrate-binding protein frequently co-occurs in genomes with a family of disaccharide phosphorylases, TIGR02336, suggesting that the molecule transported will include beta-D-galactopyranosyl-(1-3)-N-acetyl-D-glucosamine and related carbohydrates. Members of this family are sporadically strain by strain, often in species with a human host association, including Propionibacterium acnes and Clostridium perfringens, and Bacillus cereus.
Probab=28.39 E-value=76 Score=26.33 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=7.5
Q ss_pred HHHHHHHhhcccccc
Q 030573 13 VLGVSTLILDSFDAK 27 (175)
Q Consensus 13 ~~~~~~~~l~~~~~~ 27 (175)
+++++++.|++|+..
T Consensus 9 ~~~~~~~~l~gCg~~ 23 (437)
T TIGR03850 9 ALAMAASSLAGCGSG 23 (437)
T ss_pred HHHHHHHHHhhccCC
Confidence 333334456667643
No 71
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=28.34 E-value=65 Score=26.69 Aligned_cols=12 Identities=17% Similarity=0.088 Sum_probs=8.0
Q ss_pred CCCCCCCCCCEE
Q 030573 68 GQGPSPPVGFQV 79 (175)
Q Consensus 68 G~G~~~~~gd~V 79 (175)
-.|..++.|+.+
T Consensus 78 ~~G~~VkkGqvL 89 (385)
T PRK09859 78 IEGDKVNQGDSL 89 (385)
T ss_pred CCcCEecCCCEE
Confidence 356678888853
No 72
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=28.31 E-value=44 Score=27.03 Aligned_cols=23 Identities=9% Similarity=0.234 Sum_probs=18.4
Q ss_pred CCcchhHHHHhcCCCCCcEEEEE
Q 030573 110 GQVVKGLDEGILTMKTGGKRRLY 132 (175)
Q Consensus 110 ~~~~~g~~~~l~gmk~G~~~~~~ 132 (175)
..+.+.|.+++..|++|+....+
T Consensus 197 ~~l~~~~~~a~~~Lk~GevS~pv 219 (310)
T PRK01326 197 TNVPEQVKKAAFALDEDGVSDVI 219 (310)
T ss_pred CcccHHHHHHHHcCCCCCcCCce
Confidence 35677899999999999976543
No 73
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=28.31 E-value=50 Score=26.29 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=18.7
Q ss_pred CCCcchhHHHHhcCCCCCcEEEE
Q 030573 109 SGQVVKGLDEGILTMKTGGKRRL 131 (175)
Q Consensus 109 ~~~~~~g~~~~l~gmk~G~~~~~ 131 (175)
.+.+.|.|.+++..|++|+....
T Consensus 186 ~~~l~~~~~~a~~~Lk~GevS~p 208 (283)
T PRK02998 186 PGQTVKEFEEAAYKLDAGQVSEP 208 (283)
T ss_pred CCcchHHHHHHHHcCCCCCcCCc
Confidence 34678899999999999997543
No 74
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=28.19 E-value=53 Score=25.22 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHHHhhcccc
Q 030573 4 VSRRDLIGLVLGVSTLILDSFD 25 (175)
Q Consensus 4 ~~rr~~l~~~~~~~~~~l~~~~ 25 (175)
|++|.....++.++++.++.|.
T Consensus 1 ~~~~~~~~~~~~~~~~~lsgC~ 22 (219)
T PRK10510 1 MKKRVYLIAAVVSGALAVSGCT 22 (219)
T ss_pred CcccHHHHHHHHHHHHHHhccC
Confidence 4566555555555555566675
No 75
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=27.97 E-value=45 Score=20.51 Aligned_cols=14 Identities=50% Similarity=0.757 Sum_probs=7.4
Q ss_pred hhhHHHHHHHHHHH
Q 030573 4 VSRRDLIGLVLGVS 17 (175)
Q Consensus 4 ~~rr~~l~~~~~~~ 17 (175)
|+|+.+++++++++
T Consensus 1 ms~~viIaL~~ava 14 (66)
T PF10907_consen 1 MSRRVIIALVVAVA 14 (66)
T ss_pred CCcchhHHHHHHHH
Confidence 45666555444433
No 76
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=27.67 E-value=81 Score=17.34 Aligned_cols=10 Identities=50% Similarity=0.700 Sum_probs=5.9
Q ss_pred chhhHHHHHH
Q 030573 3 LVSRRDLIGL 12 (175)
Q Consensus 3 ~~~rr~~l~~ 12 (175)
.|.||.++-+
T Consensus 5 dm~RR~lmN~ 14 (39)
T PF08802_consen 5 DMSRRQLMNL 14 (39)
T ss_dssp -HHHHHHHHH
T ss_pred ChhHHHHHHH
Confidence 4777776643
No 77
>PF12389 Peptidase_M73: Camelysin metallo-endopeptidase; InterPro: IPR022121 Camelysin is a novel surface metallopeptidase from Bacillus cereus []. Camelysin prefers cleavage sites in front of aliphatic and hydrophilic amino acid residues (-OH, -SO3H, amido group), and requires zinc for activity [, ].
Probab=27.64 E-value=2.8e+02 Score=21.14 Aligned_cols=17 Identities=6% Similarity=0.085 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHHHHHh
Q 030573 4 VSRRDLIGLVLGVSTLI 20 (175)
Q Consensus 4 ~~rr~~l~~~~~~~~~~ 20 (175)
|+|+..++++.++++++
T Consensus 5 ~kkklg~gia~aalg~~ 21 (199)
T PF12389_consen 5 LKKKLGMGIASAALGAA 21 (199)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67777766655544433
No 78
>PRK08671 methionine aminopeptidase; Provisional
Probab=27.56 E-value=1.7e+02 Score=23.26 Aligned_cols=53 Identities=21% Similarity=0.263 Sum_probs=33.4
Q ss_pred CCCCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCC--Cc----chhHHHHhcCCCCCcEE
Q 030573 70 GPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG--QV----VKGLDEGILTMKTGGKR 129 (175)
Q Consensus 70 G~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~--~~----~~g~~~~l~gmk~G~~~ 129 (175)
...+++||.|.+++-... ||-..|.+ .++.+|.. .+ ..+++.++..+|+|-+.
T Consensus 69 ~~~l~~GDvV~iD~G~~~-dGY~aD~a------rT~~vG~~~~~l~~a~~~a~~aai~~ikpG~~~ 127 (291)
T PRK08671 69 ERVFPEGDVVKLDLGAHV-DGYIADTA------VTVDLGGKYEDLVEASEEALEAAIEVVRPGVSV 127 (291)
T ss_pred CcccCCCCEEEEEEeEEE-CCEEEEEE------EEEEeChhHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 345899999999987654 77655544 45666632 12 34555566667777553
No 79
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=26.50 E-value=1.6e+02 Score=26.34 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=22.0
Q ss_pred eecCCC--eE-EEEEEcCC--CCC--CCCCCEEEEEEEEEe
Q 030573 54 VTTESG--LQ-YKDIKVGQ--GPS--PPVGFQVAANYVAMI 87 (175)
Q Consensus 54 ~~~~~G--~~-~~~~~~G~--G~~--~~~gd~V~v~y~~~~ 87 (175)
..++.| .. ..+...|. |.. +..||.|.|+..=.+
T Consensus 38 ~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L 78 (596)
T PLN00044 38 SAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNAL 78 (596)
T ss_pred EEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCC
Confidence 345666 33 34556674 665 569999999876554
No 80
>PRK13616 lipoprotein LpqB; Provisional
Probab=26.21 E-value=79 Score=28.19 Aligned_cols=22 Identities=23% Similarity=0.151 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHHHHHHhhcccc
Q 030573 4 VSRRDLIGLVLGVSTLILDSFD 25 (175)
Q Consensus 4 ~~rr~~l~~~~~~~~~~l~~~~ 25 (175)
++||..+++++++++++++.|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~sgCa 24 (591)
T PRK13616 3 ISRRLKLLAALLAVAALLAGCA 24 (591)
T ss_pred chhHHHHHHHHHHHHHHhhhcc
Confidence 3444444444555555566665
No 81
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=26.03 E-value=58 Score=22.12 Aligned_cols=9 Identities=0% Similarity=0.065 Sum_probs=5.1
Q ss_pred CCeEEEEEE
Q 030573 58 SGLQYKDIK 66 (175)
Q Consensus 58 ~G~~~~~~~ 66 (175)
...++++..
T Consensus 70 ~~~W~Yi~~ 78 (113)
T PRK11548 70 TNTWFYVFR 78 (113)
T ss_pred CceEEEEEE
Confidence 345666664
No 82
>COG2913 OlmA Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane]
Probab=25.77 E-value=73 Score=22.98 Aligned_cols=24 Identities=4% Similarity=0.094 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHHhhcccccc
Q 030573 4 VSRRDLIGLVLGVSTLILDSFDAK 27 (175)
Q Consensus 4 ~~rr~~l~~~~~~~~~~l~~~~~~ 27 (175)
+++...+.+++.++++++++|...
T Consensus 3 ~~~~~~~~~~a~l~~~als~Cst~ 26 (147)
T COG2913 3 LMATAILAIAALLGAAALSGCSTL 26 (147)
T ss_pred HHHHHHHHHHHHHHHHHhccCccc
Confidence 345555556666666666777653
No 83
>PRK13613 lipoprotein LpqB; Provisional
Probab=25.75 E-value=82 Score=28.15 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=6.5
Q ss_pred HHHHHhhccccc
Q 030573 15 GVSTLILDSFDA 26 (175)
Q Consensus 15 ~~~~~~l~~~~~ 26 (175)
++++++++.|+.
T Consensus 18 ~~~~~llagCas 29 (599)
T PRK13613 18 GCGVVLLAGCAS 29 (599)
T ss_pred HHHHHhhhhccc
Confidence 334445677764
No 84
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=25.46 E-value=1.3e+02 Score=26.08 Aligned_cols=51 Identities=10% Similarity=0.169 Sum_probs=33.1
Q ss_pred CCCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCC--Cc----chhHHHHhcCCCCCcE
Q 030573 71 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG--QV----VKGLDEGILTMKTGGK 128 (175)
Q Consensus 71 ~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~--~~----~~g~~~~l~gmk~G~~ 128 (175)
..++.||.|.|++-... ||-..|.+ ++|.+|.. .+ ..+.+.|+.-+++|-+
T Consensus 232 ~vLk~GDvVkID~G~~v-dGYiaD~A------rTv~vg~~~~~L~eAv~eA~~aaI~~~kpGv~ 288 (470)
T PTZ00053 232 TVLTYDDVCKLDFGTHV-NGRIIDCA------FTVAFNPKYDPLLQATKDATNTGIKEAGIDVR 288 (470)
T ss_pred cEecCCCeEEEEEeEEE-CCEEEeEE------EEEEeCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 44899999999999876 88877765 44555521 12 2345556666666654
No 85
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=24.66 E-value=2e+02 Score=24.14 Aligned_cols=52 Identities=21% Similarity=0.153 Sum_probs=35.1
Q ss_pred CCCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCC----------Cc----chhHHHHhcCCCCCcEE
Q 030573 71 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG----------QV----VKGLDEGILTMKTGGKR 129 (175)
Q Consensus 71 ~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~----------~~----~~g~~~~l~gmk~G~~~ 129 (175)
..+++||.|.+++-... ||-..|.+ .+|.+|.. .+ ..+++.++..+++|-+.
T Consensus 99 ~~Lk~GDvVkIDlG~~i-dGY~aD~a------rTv~vG~~~~~~~t~~~~~l~~aa~~A~~aai~~vkPG~~~ 164 (389)
T TIGR00495 99 YILKEGDVVKIDLGCHI-DGFIALVA------HTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLVKPGNTN 164 (389)
T ss_pred cCcCCCCEEEEEEEEEE-CCEEEEEE------EEEEECCcccccCCHHHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 45899999999998876 78666554 56667631 11 13455677777887664
No 86
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=24.52 E-value=2.3e+02 Score=19.72 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=0.0
Q ss_pred CCchhhHHHHH
Q 030573 1 MNLVSRRDLIG 11 (175)
Q Consensus 1 m~~~~rr~~l~ 11 (175)
|++-+||.++.
T Consensus 1 ~~~~~~rl~~~ 11 (131)
T PF03100_consen 1 MKRRKKRLILV 11 (131)
T ss_dssp -----------
T ss_pred CCcceeehhhH
Confidence 66545555443
No 87
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=23.96 E-value=78 Score=22.93 Aligned_cols=10 Identities=20% Similarity=0.564 Sum_probs=5.6
Q ss_pred EEEEEEEEEe
Q 030573 78 QVAANYVAMI 87 (175)
Q Consensus 78 ~V~v~y~~~~ 87 (175)
.|.|.|++-+
T Consensus 84 ~v~V~Y~GiL 93 (153)
T COG2332 84 SVTVSYEGIL 93 (153)
T ss_pred eEEEEEeccC
Confidence 4566666554
No 88
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.86 E-value=1.6e+02 Score=20.42 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=14.3
Q ss_pred CCCCCEEEEEEEEEeCC
Q 030573 73 PPVGFQVAANYVAMIPS 89 (175)
Q Consensus 73 ~~~gd~V~v~y~~~~~~ 89 (175)
+.+||.|.+||--+...
T Consensus 71 iadGdLV~vh~hqt~~~ 87 (129)
T COG4922 71 IADGDLVTVHYHQTVSE 87 (129)
T ss_pred eccCCEEEEEEeeeeCC
Confidence 78999999999987643
No 89
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=23.70 E-value=93 Score=15.13 Aligned_cols=13 Identities=23% Similarity=0.120 Sum_probs=6.8
Q ss_pred HHHHHhhcccccc
Q 030573 15 GVSTLILDSFDAK 27 (175)
Q Consensus 15 ~~~~~~l~~~~~~ 27 (175)
.++++.+++|+..
T Consensus 6 ~~~~~~LsgCG~K 18 (24)
T PF13627_consen 6 LALALALSGCGQK 18 (24)
T ss_pred HHHHHHHHhcccC
Confidence 3334456667643
No 90
>COG4313 Protein involved in meta-pathway of phenol degradation [Energy production and conversion]
Probab=23.23 E-value=89 Score=25.30 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=14.1
Q ss_pred CCchhhHHHHHHHHHHHHHhhccc
Q 030573 1 MNLVSRRDLIGLVLGVSTLILDSF 24 (175)
Q Consensus 1 m~~~~rr~~l~~~~~~~~~~l~~~ 24 (175)
|+.|+-+.+..++++++++|+.+.
T Consensus 1 ~r~~~~~lla~~~~~~aa~c~~a~ 24 (304)
T COG4313 1 MRVMRSKLLAALVVLLAAACLGAA 24 (304)
T ss_pred CccchhhHHHHHHHHHHHHhhhhh
Confidence 666766666555555555555433
No 91
>PRK13792 lysozyme inhibitor; Provisional
Probab=23.20 E-value=80 Score=22.18 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhcccccc
Q 030573 10 IGLVLGVSTLILDSFDAK 27 (175)
Q Consensus 10 l~~~~~~~~~~l~~~~~~ 27 (175)
|.++++..++.|++|+..
T Consensus 5 l~~ll~~~~~lLsaCs~~ 22 (127)
T PRK13792 5 LWLLLAAVPVVLVACGGS 22 (127)
T ss_pred HHHHHHHHHhheecccCC
Confidence 344445555556777754
No 92
>PRK12897 methionine aminopeptidase; Reviewed
Probab=23.15 E-value=3.1e+02 Score=21.04 Aligned_cols=54 Identities=24% Similarity=0.322 Sum_probs=34.2
Q ss_pred CCCCCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCCC---------cchhHHHHhcCCCCCcEE
Q 030573 69 QGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ---------VVKGLDEGILTMKTGGKR 129 (175)
Q Consensus 69 ~G~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~~---------~~~g~~~~l~gmk~G~~~ 129 (175)
+...+++||.|.+++-... +|-..|.+ .+|.+|... ...+.+.++..+++|-+.
T Consensus 81 ~~~~l~~Gd~V~iD~g~~~-~GY~sD~t------RT~~vG~~s~~~~~~~~~~~~a~~~~i~~~kpG~~~ 143 (248)
T PRK12897 81 ADVPLTEGDIVTIDMVVNL-NGGLSDSA------WTYRVGKVSDEAEKLLLVAENALYKGIDQAVIGNRV 143 (248)
T ss_pred CCcccCCCCEEEEEeeEEE-CCEEEEEE------EEEEcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 3456899999999987754 66554443 566666421 133555566777777543
No 93
>PF13786 DUF4179: Domain of unknown function (DUF4179); PDB: 3FBQ_A.
Probab=22.49 E-value=1.8e+02 Score=18.43 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=14.7
Q ss_pred ceecCCCeEEEEEEcCCCCCCCCCCEEEEEEEEEe
Q 030573 53 MVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMI 87 (175)
Q Consensus 53 ~~~~~~G~~~~~~~~G~G~~~~~gd~V~v~y~~~~ 87 (175)
...++.|+...+-.- ..++..+.+.|+...
T Consensus 63 ~s~t~~GitvTi~~v-----~~D~~~l~i~~~v~~ 92 (94)
T PF13786_consen 63 KSVTDNGITVTINEV-----IADGNRLIISYTVKS 92 (94)
T ss_dssp EEEEETTEEEEEEEE-----EE-SSEEEEEEEEEE
T ss_pred cEEEECCEEEEEEEE-----EEECCEEEEEEEEEe
Confidence 334455555543322 445566666666554
No 94
>TIGR02184 Myco_arth_vir_N Mycoplasma virulence family signal region. This model represents the N-terminal region, including a probable signal sequence or signal anchor which in most instances has four consecutive Lys residues before the hydrophobic stretch, of a family of large, virulence-associated proteins in Mycoplasma arthritidis and smaller proteins in Mycoplasma capricolum.
Probab=22.48 E-value=57 Score=17.19 Aligned_cols=8 Identities=13% Similarity=0.414 Sum_probs=3.6
Q ss_pred CCchhhHH
Q 030573 1 MNLVSRRD 8 (175)
Q Consensus 1 m~~~~rr~ 8 (175)
|..++++.
T Consensus 1 M~~~KKKK 8 (33)
T TIGR02184 1 MYFSKKKK 8 (33)
T ss_pred Cchhhhhh
Confidence 44444443
No 95
>PRK13614 lipoprotein LpqB; Provisional
Probab=21.81 E-value=80 Score=28.09 Aligned_cols=26 Identities=12% Similarity=-0.036 Sum_probs=15.2
Q ss_pred CCchhhHHHHHHHHHHHHHhhccccc
Q 030573 1 MNLVSRRDLIGLVLGVSTLILDSFDA 26 (175)
Q Consensus 1 m~~~~rr~~l~~~~~~~~~~l~~~~~ 26 (175)
|..=|||.+.+.+++++++++++|+.
T Consensus 1 ~~~~~~~~a~~~~~~~~~~~lagCa~ 26 (573)
T PRK13614 1 GAPRRTRCASAALLVLLVVTLSACAQ 26 (573)
T ss_pred CCCCchhHHHHHHHHHHHHHhhhccc
Confidence 44435555555555556666777764
No 96
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=21.71 E-value=1e+02 Score=20.36 Aligned_cols=10 Identities=10% Similarity=0.112 Sum_probs=5.6
Q ss_pred CCchhhHHHHH
Q 030573 1 MNLVSRRDLIG 11 (175)
Q Consensus 1 m~~~~rr~~l~ 11 (175)
|+ |||+.++.
T Consensus 1 m~-~~~~~~ll 10 (91)
T TIGR01165 1 MS-MKKTIWLL 10 (91)
T ss_pred CC-cchhHHHH
Confidence 55 56665444
No 97
>COG4166 OppA ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism]
Probab=21.69 E-value=1.2e+02 Score=26.58 Aligned_cols=7 Identities=29% Similarity=0.330 Sum_probs=3.1
Q ss_pred Hhhcccc
Q 030573 19 LILDSFD 25 (175)
Q Consensus 19 ~~l~~~~ 25 (175)
+++.+|+
T Consensus 21 ~~l~a~~ 27 (562)
T COG4166 21 LALAACA 27 (562)
T ss_pred Hhhhhcc
Confidence 3334555
No 98
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=21.57 E-value=90 Score=25.24 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=17.5
Q ss_pred CCcchhHHHHhcCCCCCcEEE
Q 030573 110 GQVVKGLDEGILTMKTGGKRR 130 (175)
Q Consensus 110 ~~~~~g~~~~l~gmk~G~~~~ 130 (175)
+.+.+.|..++..|++|+...
T Consensus 251 ~~l~~~~~~a~~~l~~Gevs~ 271 (336)
T PRK00059 251 SGYDKEFMDGAKALKEGEISA 271 (336)
T ss_pred CccCHHHHHHHHcCCCCCcCc
Confidence 467788999999999999754
No 99
>PRK09810 entericidin A; Provisional
Probab=21.56 E-value=93 Score=17.29 Aligned_cols=7 Identities=14% Similarity=0.439 Sum_probs=3.7
Q ss_pred hhccccc
Q 030573 20 ILDSFDA 26 (175)
Q Consensus 20 ~l~~~~~ 26 (175)
.+++|..
T Consensus 15 ~L~aCNT 21 (41)
T PRK09810 15 LLTGCNT 21 (41)
T ss_pred HHhhhhh
Confidence 4555653
No 100
>TIGR02122 TRAP_TAXI TRAP transporter solute receptor, TAXI family. This family is one of at least three major families of extracytoplasmic solute receptor (ESR) for TRAP (Tripartite ATP-independent Periplasmic Transporter) transporters. The others are the DctP (TIGR00787) and SmoM (pfam03480) families. These transporters are secondary (driven by an ion gradient) but composed of three polypeptides, although in some species the 4-TM and 12-TM integral membrane proteins are fused. Substrates for this transporter family are not fully characterized but, besides C4 dicarboxylates, may include mannitol and other compounds.
Probab=21.49 E-value=75 Score=25.02 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=11.7
Q ss_pred hhhHHHHHH-HHHHHHHhhccccc
Q 030573 4 VSRRDLIGL-VLGVSTLILDSFDA 26 (175)
Q Consensus 4 ~~rr~~l~~-~~~~~~~~l~~~~~ 26 (175)
||||..+++ +++.+++.+++|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (320)
T TIGR02122 1 MKKRLFLLGAALAIVGAALAACAG 24 (320)
T ss_pred CchHHHHHHHHHHHHHHHHHhhcc
Confidence 566665543 33333444566663
No 101
>COG4764 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.26 E-value=98 Score=22.77 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhhcccccc
Q 030573 7 RDLIGLVLGVSTLILDSFDAK 27 (175)
Q Consensus 7 r~~l~~~~~~~~~~l~~~~~~ 27 (175)
+.++..++++++++|+.|+..
T Consensus 3 ~s~~r~~~~v~lL~LagCaTa 23 (197)
T COG4764 3 PSMMRLVFAVVLLALAGCATA 23 (197)
T ss_pred chhHHHHHHHHHHHHhhcccC
Confidence 344444555555666666643
No 102
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=21.24 E-value=1.6e+02 Score=17.54 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=12.8
Q ss_pred CCCCeEEEEEEEeecCCC
Q 030573 154 PNSPVIFDVSLEYIPGLE 171 (175)
Q Consensus 154 ~~~~l~~~vel~~i~~~~ 171 (175)
|++.+.|+.+++++....
T Consensus 17 P~s~lYYe~kV~~~d~~~ 34 (55)
T PF09465_consen 17 PGSSLYYEGKVLSYDSKS 34 (55)
T ss_dssp TTTS-EEEEEEEEEETTT
T ss_pred CCCCcEEEEEEEEecccC
Confidence 467778999999976653
No 103
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=20.87 E-value=95 Score=22.13 Aligned_cols=12 Identities=17% Similarity=-0.059 Sum_probs=5.6
Q ss_pred CCEEEEEEEEEe
Q 030573 76 GFQVAANYVAMI 87 (175)
Q Consensus 76 gd~V~v~y~~~~ 87 (175)
|+.+.++++-..
T Consensus 102 ~~~~~~~~~C~~ 113 (162)
T PF12276_consen 102 GGTVTFTMSCTG 113 (162)
T ss_pred CCEEEEEEEeCC
Confidence 444555554443
No 104
>COG0048 RpsL Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]
Probab=20.83 E-value=1.9e+02 Score=20.25 Aligned_cols=28 Identities=14% Similarity=0.080 Sum_probs=23.4
Q ss_pred ecCCCeEEEEEEcCCCCCCCCCCEEEEE
Q 030573 55 TTESGLQYKDIKVGQGPSPPVGFQVAAN 82 (175)
Q Consensus 55 ~~~~G~~~~~~~~G~G~~~~~gd~V~v~ 82 (175)
...+|....-+.+|+|.-+++.|.|.|.
T Consensus 62 rL~NG~~VtAyiPg~Gh~lqEH~~Vli~ 89 (129)
T COG0048 62 RLINGKEVTAYIPGEGHNLQEHSEVLIR 89 (129)
T ss_pred EeeCCcEEEEEcCCCCccccccCEEEEe
Confidence 3448999999999999989999998874
No 105
>PRK12896 methionine aminopeptidase; Reviewed
Probab=20.66 E-value=3.5e+02 Score=20.66 Aligned_cols=52 Identities=25% Similarity=0.200 Sum_probs=31.9
Q ss_pred CCCCCCCCEEEEEEEEEeCCCcEEecccCCCccEEEEeCCCC---------cchhHHHHhcCCCCCcE
Q 030573 70 GPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ---------VVKGLDEGILTMKTGGK 128 (175)
Q Consensus 70 G~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~p~~~~~g~~~---------~~~g~~~~l~gmk~G~~ 128 (175)
+..+++||.|.+++-... +|-..|. ..+|.+|... ...+++.++..|++|-+
T Consensus 88 ~~~l~~Gd~v~iD~g~~~-~gY~aD~------~RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~ 148 (255)
T PRK12896 88 PRVIKDGDLVNIDVSAYL-DGYHGDT------GITFAVGPVSEEAEKLCRVAEEALWAGIKQVKAGRP 148 (255)
T ss_pred CccCCCCCEEEEEEeEEE-CcEEEee------EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 355899999999988764 5543332 2556666421 23455556667777643
No 106
>PRK04081 hypothetical protein; Provisional
Probab=20.50 E-value=3.2e+02 Score=20.84 Aligned_cols=27 Identities=7% Similarity=-0.038 Sum_probs=12.6
Q ss_pred CCchhhHHHHH---HHHHHHHHhhcccccc
Q 030573 1 MNLVSRRDLIG---LVLGVSTLILDSFDAK 27 (175)
Q Consensus 1 m~~~~rr~~l~---~~~~~~~~~l~~~~~~ 27 (175)
|+++||-.=.. .+.++++..|..|...
T Consensus 1 mkhikkI~d~~~~gglga~~~~~L~gC~sn 30 (207)
T PRK04081 1 MKHIKKISDYAIVGGLGALVMVGLVGCGSN 30 (207)
T ss_pred CcchhhhhhhhhhhhHHHHHHHHHhcccCC
Confidence 67776654332 2333333335555543
Done!