Your job contains 1 sequence.
>030575
MEFDSEDAARKFYMGYARRMGFVVRIMQRRRSRTDGTTLARRLGCNKQGFSPNSKGTNGP
EKKPRPSAREGCKATILVKMEKSGKWVVTRFIKDHNHPLVVTANGYSTVGDKDKKIEELT
LELERQEQLCAAYREKLFNFMNNVEEQTEELSSKIQVIVDNIRKVESEMLKSFLQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030575
(175 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2135738 - symbol:AT4G12850 "AT4G12850" species... 470 1.2e-44 1
TAIR|locus:2041041 - symbol:AT2G43280 species:3702 "Arabi... 426 5.3e-40 1
TAIR|locus:2079651 - symbol:AT3G07500 "AT3G07500" species... 339 8.8e-31 1
TAIR|locus:2097543 - symbol:AT3G59470 species:3702 "Arabi... 311 8.2e-28 1
TAIR|locus:2121060 - symbol:FRS5 "FAR1-related sequence 5... 278 1.6e-27 2
TAIR|locus:2144930 - symbol:FRS12 "FAR1-related sequence ... 196 2.0e-14 1
TAIR|locus:2082420 - symbol:FRS7 "FAR1-related sequence 7... 191 6.4e-14 1
TAIR|locus:2129665 - symbol:FAR1 "FAR-RED IMPAIRED RESPON... 190 9.2e-14 1
TAIR|locus:2062606 - symbol:FRS2 "FAR1-related sequence 2... 182 6.4e-13 1
TAIR|locus:2090394 - symbol:FHY3 "far-red elongated hypoc... 163 2.2e-12 2
TAIR|locus:2014639 - symbol:FRS4 "FAR1-related sequence 4... 173 5.1e-12 1
TAIR|locus:2059304 - symbol:FRS3 "FAR1-related sequence 3... 148 3.0e-09 1
TAIR|locus:2016259 - symbol:FRS8 "FAR1-related sequence 8... 137 3.6e-08 1
TAIR|locus:2012828 - symbol:FRS11 "FAR1-related sequence ... 136 4.2e-08 1
TAIR|locus:2035144 - symbol:FRS6 "FAR1-related sequence 6... 127 4.1e-07 1
TAIR|locus:2182778 - symbol:FRS10 "FAR1-related sequence ... 122 1.4e-06 1
>TAIR|locus:2135738 [details] [associations]
symbol:AT4G12850 "AT4G12850" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0009639 "response to red or far red
light" evidence=ISS] INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002687
EMBL:AL049640 EMBL:AL161535 HOGENOM:HOG000090425 IPI:IPI00545761
PIR:T06643 RefSeq:NP_193021.1 UniGene:At.33440 DNASU:826897
EnsemblPlants:AT4G12850.1 GeneID:826897 KEGG:ath:AT4G12850
TAIR:At4g12850 InParanoid:Q9SU01 OMA:EEIECQD PhylomeDB:Q9SU01
ProtClustDB:CLSN2916026 ArrayExpress:Q9SU01 Genevestigator:Q9SU01
Uniprot:Q9SU01
Length = 183
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 90/170 (52%), Positives = 125/170 (73%)
Query: 1 MEFDSEDAARKFYMGYARRMGFVVRIMQRRRSRTDGTTLARRLGCNKQGFSPNSKGTNGP 60
++F+SE+ A+ FY+ Y++R+GFVVR+MQRRRS DG TLARRLGCNKQGF PN++ ++
Sbjct: 14 LKFESEEEAKDFYVEYSKRLGFVVRMMQRRRSGIDGRTLARRLGCNKQGFGPNNQRSSSS 73
Query: 61 EKKPRPSAREGCKATILVKMEKSGKWVVTRFIKDHNHPL-VVTANGYSTVGDKDKKIXXX 119
S+REGCKATILVKMEKSGKWVVTRFIK+HNH L + ++ Y + DK++KI
Sbjct: 74 SS----SSREGCKATILVKMEKSGKWVVTRFIKEHNHSLQFIGSSSYDSFADKERKIKEL 129
Query: 120 XXXXXXXXXXCAAYREKLFNFMNNVEEQTEELSSKIQVIVDNIRKVESEM 169
C YR++L +F++NVE TEELS K++ IV+N++K+E ++
Sbjct: 130 TEEIECQDRLCDVYRDRLVSFIDNVEHYTEELSLKVRDIVENVKKLECQI 179
>TAIR|locus:2041041 [details] [associations]
symbol:AT2G43280 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0009639 "response to red or
far red light" evidence=ISS] [GO:0006301 "postreplication repair"
evidence=RCA] INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002685
EMBL:BT002891 EMBL:BT004409 IPI:IPI00532233 RefSeq:NP_181857.2
UniGene:At.36909 EnsemblPlants:AT2G43280.1 GeneID:818930
KEGG:ath:AT2G43280 TAIR:At2g43280 HOGENOM:HOG000090425
InParanoid:Q84J94 OMA:PREARHT PhylomeDB:Q84J94
ProtClustDB:CLSN2680222 Genevestigator:Q84J94 Uniprot:Q84J94
Length = 206
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 80/165 (48%), Positives = 113/165 (68%)
Query: 3 FDSEDAARKFYMGYARRMGFVVRIMQRRRSRTDGTTLARRLGCNKQGFSPNSKGTNGPEK 62
F+SEDAA+ FY Y+RR+GFV+R+M RRS DG LARR GCNK+G + +G G +
Sbjct: 28 FESEDAAKMFYDDYSRRLGFVMRVMSCRRSEKDGRILARRFGCNKEGHCVSIRGKFGSVR 87
Query: 63 KPRPSAREGCKATILVKMEKSGKWVVTRFIKDHNHPLVVTAN-GYSTVGDKDKKIXXXXX 121
KPRPS REGCKA I VK ++SGKWV+T+F+K+HNHPLVV+ T+ +KDK+I
Sbjct: 88 KPRPSTREGCKAMIHVKYDRSGKWVITKFVKEHNHPLVVSPREARHTLDEKDKRIQELTI 147
Query: 122 XXXXXXXXCAAYREKLFNFMNNVEEQTEELSSKIQVIVDNIRKVE 166
CAAY+E+L F VEE + +++ K++ +V+N+++ E
Sbjct: 148 ELRNKKRLCAAYKEQLDAFAKIVEEHSNQIAKKVENVVNNLKEFE 192
>TAIR|locus:2079651 [details] [associations]
symbol:AT3G07500 "AT3G07500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0009639 "response to red or far red
light" evidence=ISS] INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002686
GenomeReviews:BA000014_GR HOGENOM:HOG000090425 EMBL:BT004031
EMBL:BT005083 IPI:IPI00525865 RefSeq:NP_187406.2 UniGene:At.48631
UniGene:At.71201 IntAct:Q84JA7 PRIDE:Q84JA7
EnsemblPlants:AT3G07500.1 GeneID:819938 KEGG:ath:AT3G07500
TAIR:At3g07500 eggNOG:NOG320386 InParanoid:Q84JA7 OMA:ERRRCTA
PhylomeDB:Q84JA7 ProtClustDB:CLSN2690766 Genevestigator:Q84JA7
Uniprot:Q84JA7
Length = 217
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 74/174 (42%), Positives = 101/174 (58%)
Query: 1 MEFDSEDAARKFYMGYARRMGFVVRIMQRRRSRTDGTTLARRLGCNKQGFSPNSKGTNGP 60
MEF+SE+AA+ FY YA MGFV+R+ RRS DGT + RRL CNK+GF S+
Sbjct: 37 MEFESEEAAKSFYDNYATCMGFVMRVDAFRRSMRDGTVVWRRLVCNKEGFR-RSRPRRSE 95
Query: 61 EKKPRPSAREGCKATILVKMEKSGKWVVTRFIKDHNHPLV-----VTANGY--STVGDKD 113
+KPR REGCKA I+VK EKSG W+VT+F K+HNHPL+ V N T +KD
Sbjct: 96 SRKPRAITREGCKALIVVKREKSGTWLVTKFEKEHNHPLLPLSPNVRRNFQLPQTPDEKD 155
Query: 114 KKIXXXXXXXXXXXXXCAAYREKLFNFMNNVEEQTEELSSKIQVIVDNIRKVES 167
KI C A +++L + +EE + L+ I ++ ++R +ES
Sbjct: 156 AKIRELSAELSRERRRCTALQQQLDMVLKEMEEHSNHLTININSVIQSVRDIES 209
>TAIR|locus:2097543 [details] [associations]
symbol:AT3G59470 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0009639 "response to red or
far red light" evidence=ISS] INTERPRO:IPR004330 Pfam:PF03101
EMBL:CP002686 EMBL:AY058089 EMBL:AY143081 IPI:IPI00519802
RefSeq:NP_001190136.1 RefSeq:NP_567085.1 UniGene:At.26657
IntAct:Q93Z68 PaxDb:Q93Z68 PRIDE:Q93Z68 EnsemblPlants:AT3G59470.1
EnsemblPlants:AT3G59470.2 GeneID:825116 KEGG:ath:AT3G59470
TAIR:At3g59470 eggNOG:NOG330011 InParanoid:Q93Z68 OMA:VENHNEM
PhylomeDB:Q93Z68 ProtClustDB:CLSN2689239 Genevestigator:Q93Z68
Uniprot:Q93Z68
Length = 251
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 67/169 (39%), Positives = 94/169 (55%)
Query: 2 EFDSEDAARKFYMGYARRMGFVVRIMQRRRSRTDGTTLARRLGCNKQGFSPNSKGTNGPE 61
EF+SE AA FY YA ++GFV+R+ + RSR DG+ + R+L CNK+G+ SK
Sbjct: 75 EFESEAAAHGFYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSK--RDKV 132
Query: 62 KKPRPSAREGCKATILVKMEKSGKWVVTRFIKDHNHPLVV--TANG--YSTVGDKDKKIX 117
+ R R GCKA IL++ E SGKWV+T+F+K+HNH L+ G Y ++ KI
Sbjct: 133 IRQRAETRVGCKAMILIRKENSGKWVITKFVKEHNHSLMPGRVRRGCIYDQYPNEHDKIQ 192
Query: 118 XXXXXXXXXXXXCAAYREKLFNFMNNVEEQTEELSSKIQVIVDNIRKVE 166
A Y+ L +E+ E LS +IQ IVDN+R +E
Sbjct: 193 ELMQQLAAEKKRAATYKRHLEMLFEQIEQHNESLSKRIQHIVDNVRNLE 241
>TAIR|locus:2121060 [details] [associations]
symbol:FRS5 "FAR1-related sequence 5" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0008270 EMBL:AL035538
EMBL:AL161593 InterPro:IPR018289 Pfam:PF10551 HOGENOM:HOG000241939
EMBL:AY136457 IPI:IPI00529649 PIR:T05645 RefSeq:NP_195531.1
UniGene:At.31195 UniGene:At.48951 PRIDE:Q9SZL8
EnsemblPlants:AT4G38180.1 GeneID:829974 KEGG:ath:AT4G38180
TAIR:At4g38180 eggNOG:NOG236180 InParanoid:Q9SZL8 OMA:RNNRQKS
PhylomeDB:Q9SZL8 ProtClustDB:CLSN2685396 Genevestigator:Q9SZL8
Uniprot:Q9SZL8
Length = 788
Score = 278 (102.9 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
Identities = 54/102 (52%), Positives = 71/102 (69%)
Query: 1 MEFDSEDAARKFYMGYARRMGFVVRIMQRRRSRTDGTTLARRLGCNKQGF-SPNSKGTNG 59
+EF+SE+AA+ FY YARR+GF R+ RRSR DG + R+ C K+GF + N K T
Sbjct: 77 LEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRTKD 136
Query: 60 PE-KKPRPSAREGCKATILVKMEKSGKWVVTRFIKDHNHPLV 100
E K+PR R GCKA++ VKM+ SGKW+V+ F+KDHNH LV
Sbjct: 137 REIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELV 178
Score = 66 (28.3 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 111 DKDKKIXXXXXXXXXXXXXCAAYREKLFNFMNNVEEQTEELSSKIQVI 158
+ DKKI C AYR L + + +E+Q ++S K+Q I
Sbjct: 733 EMDKKINQLRNELELANRKCEAYRTNLLSVLKEMEDQKLQVSIKVQNI 780
>TAIR|locus:2144930 [details] [associations]
symbol:FRS12 "FAR1-related sequence 12" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270 EMBL:AC068655
InterPro:IPR018289 Pfam:PF10551 IPI:IPI00546450 RefSeq:NP_197397.1
UniGene:At.22319 UniGene:At.72702 PaxDb:Q3E7I5 PRIDE:Q3E7I5
EnsemblPlants:AT5G18960.1 GeneID:832014 KEGG:ath:AT5G18960
TAIR:At5g18960 eggNOG:NOG292373 HOGENOM:HOG000112649
InParanoid:Q3E7I5 OMA:GSANEAC PhylomeDB:Q3E7I5
ProtClustDB:CLSN2686747 Genevestigator:Q3E7I5 Uniprot:Q3E7I5
Length = 788
Score = 196 (74.1 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 45/99 (45%), Positives = 57/99 (57%)
Query: 1 MEFDSEDAARKFYMGYARRMGFVVRIMQRRRSRTDGTTLARRLGCNKQGFSPNSKGTNGP 60
+EFD+ + AR+FY YA R GF VR Q RSRTDGT +RR C+K+GF NS
Sbjct: 47 LEFDTAEEAREFYNAYAARTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLNS------ 100
Query: 61 EKKPRPSAREGCKATILVKMEKSGKWVVTRFIKDHNHPL 99
R GC A I V+ +GKWV+ + K+HNH L
Sbjct: 101 --------RTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 131
Score = 171 (65.3 bits), Expect = 9.3e-12, P = 9.3e-12
Identities = 41/99 (41%), Positives = 55/99 (55%)
Query: 1 MEFDSEDAARKFYMGYARRMGFVVRIMQRRRSRTDGTTLARRLGCNKQGFSPNSKGTNGP 60
+EF S + A +FY YA +GF VRI Q RS+ DG+ +RR C+++GF
Sbjct: 215 LEFGSANEACQFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSREGFQ--------- 265
Query: 61 EKKPRPSAREGCKATILVKMEKSGKWVVTRFIKDHNHPL 99
PS R GC A + +K + SG W+V R KDHNH L
Sbjct: 266 ----HPS-RMGCGAYMRIKRQDSGGWIVDRLNKDHNHDL 299
>TAIR|locus:2082420 [details] [associations]
symbol:FRS7 "FAR1-related sequence 7" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0008270 EMBL:AC018907
InterPro:IPR018289 Pfam:PF10551 eggNOG:NOG292373
HOGENOM:HOG000112649 ProtClustDB:CLSN2686747 EMBL:AF360270
EMBL:AY150446 IPI:IPI00534625 RefSeq:NP_566278.1 UniGene:At.19021
UniGene:At.74222 PRIDE:Q9M8J3 EnsemblPlants:AT3G06250.1
GeneID:819799 KEGG:ath:AT3G06250 TAIR:At3g06250 InParanoid:Q9M8J3
OMA:RCGNEIE PhylomeDB:Q9M8J3 Genevestigator:Q9M8J3 Uniprot:Q9M8J3
Length = 764
Score = 191 (72.3 bits), Expect = 6.4e-14, P = 6.4e-14
Identities = 44/99 (44%), Positives = 56/99 (56%)
Query: 1 MEFDSEDAARKFYMGYARRMGFVVRIMQRRRSRTDGTTLARRLGCNKQGFSPNSKGTNGP 60
+EFD+ + AR +Y YA R GF VR Q RSRTDGT +RR C+K+GF NS
Sbjct: 32 LEFDTAEEARDYYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLNS------ 85
Query: 61 EKKPRPSAREGCKATILVKMEKSGKWVVTRFIKDHNHPL 99
R GC A I V+ +GKWV+ + K+HNH L
Sbjct: 86 --------RTGCPAFIRVQRRDTGKWVLDQIQKEHNHDL 116
Score = 176 (67.0 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 42/99 (42%), Positives = 56/99 (56%)
Query: 1 MEFDSEDAARKFYMGYARRMGFVVRIMQRRRSRTDGTTLARRLGCNKQGFSPNSKGTNGP 60
+EF+S + A +FY YA +GF VRI Q RS+ DG+ +RR C+K+GF
Sbjct: 194 LEFNSANEACQFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQ--------- 244
Query: 61 EKKPRPSAREGCKATILVKMEKSGKWVVTRFIKDHNHPL 99
PS R GC A + +K + SG W+V R KDHNH L
Sbjct: 245 ----HPS-RMGCGAYMRIKRQDSGGWIVDRLNKDHNHDL 278
>TAIR|locus:2129665 [details] [associations]
symbol:FAR1 "FAR-RED IMPAIRED RESPONSE 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=IMP] [GO:0010017 "red or far-red
light signaling pathway" evidence=IMP] [GO:0010018 "far-red light
signaling pathway" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0010218 "response
to far red light" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA;IDA] [GO:0042753
"positive regulation of circadian rhythm" evidence=IMP] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=RCA] [GO:0006396 "RNA
processing" evidence=RCA] [GO:0009410 "response to xenobiotic
stimulus" evidence=RCA] [GO:0009630 "gravitropism" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0010212
"response to ionizing radiation" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0016571 "histone methylation" evidence=RCA]
[GO:0016579 "protein deubiquitination" evidence=RCA] [GO:0048522
"positive regulation of cellular process" evidence=RCA]
InterPro:IPR006564 InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966
SMART:SM00575 INTERPRO:IPR004330 Pfam:PF03101 GO:GO:0005634
GO:GO:0045893 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003700 EMBL:AL161540 EMBL:Z97337 GO:GO:0010018
GO:GO:0042753 PIR:F71414 PIR:T02124 EMBL:AF159587 IPI:IPI00546816
RefSeq:NP_567455.4 UniGene:At.11570 IntAct:Q9SWG3 STRING:Q9SWG3
PaxDb:Q9SWG3 PRIDE:Q9SWG3 EnsemblPlants:AT4G15090.1 GeneID:827173
KEGG:ath:AT4G15090 TAIR:At4g15090 eggNOG:NOG306101
HOGENOM:HOG000090708 InParanoid:Q9SWG3 OMA:LNLMEPP PhylomeDB:Q9SWG3
ProtClustDB:CLSN2716659 Genevestigator:Q9SWG3 InterPro:IPR018289
Pfam:PF10551 Uniprot:Q9SWG3
Length = 827
Score = 190 (71.9 bits), Expect = 9.2e-14, P = 9.2e-14
Identities = 35/100 (35%), Positives = 57/100 (57%)
Query: 1 MEFDSEDAARKFYMGYARRMGFVVRIMQRRRSRTDGTTLARRLGCNKQGFSPNSKGTNGP 60
++FD+ +AA FY YA+ MGF I RRS+ + + C++ G +P S+ ++G
Sbjct: 55 IDFDTHEAAYIFYQEYAKSMGFTTSIKNSRRSKKTKDFIDAKFACSRYGVTPESE-SSGS 113
Query: 61 EKKPRPSAREGCKATILVKMEKSGKWVVTRFIKDHNHPLV 100
+ + CKA++ VK GKW++ F+KDHNH L+
Sbjct: 114 SSRRSTVKKTDCKASMHVKRRPDGKWIIHEFVKDHNHELL 153
>TAIR|locus:2062606 [details] [associations]
symbol:FRS2 "FAR1-related sequence 2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270 EMBL:AC005700
HOGENOM:HOG000090708 InterPro:IPR018289 Pfam:PF10551 EMBL:AK228730
EMBL:AK221503 IPI:IPI00520357 IPI:IPI00530517 PIR:G84730
RefSeq:NP_001077991.1 RefSeq:NP_001118431.1 RefSeq:NP_180784.2
RefSeq:NP_973580.1 UniGene:At.13189 UniGene:At.67147
EnsemblPlants:AT2G32250.1 EnsemblPlants:AT2G32250.3 GeneID:817785
KEGG:ath:AT2G32250 TAIR:At2g32250 eggNOG:NOG304016
InParanoid:Q3EBQ3 OMA:CKHAILV PhylomeDB:Q3EBQ3
ProtClustDB:CLSN2681190 Genevestigator:Q3EBQ3 Uniprot:Q3EBQ3
Length = 807
Score = 182 (69.1 bits), Expect = 6.4e-13, P = 6.4e-13
Identities = 40/114 (35%), Positives = 65/114 (57%)
Query: 1 MEFDSEDAARKFYMGYARRMGFVVRIMQRRRSRTDGTTLARRLGCNKQGFSPNSKGTNGP 60
M+F+S++AA FY YAR +GF + I RRS+ G + ++ C++ G + K T
Sbjct: 42 MDFESKEAAYYFYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFG-TKREKAT--- 97
Query: 61 EKKPRPSAREGCKATILVKMEKSGKWVVTRFIKDHNHPLVVTANGYSTVGDKDK 114
PR + GCKA + +K ++ KWV+ F+K+HNH + + Y +V K+K
Sbjct: 98 AINPRSCPKTGCKAGLHMKRKEDEKWVIYNFVKEHNHE-ICPDDFYVSVRGKNK 150
>TAIR|locus:2090394 [details] [associations]
symbol:FHY3 "far-red elongated hypocotyls 3" species:3702
"Arabidopsis thaliana" [GO:0004553 "hydrolase activity, hydrolyzing
O-glycosyl compounds" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0005975 "carbohydrate metabolic process"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009585 "red, far-red light phototransduction" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=IMP] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0010017 "red or far-red light signaling pathway"
evidence=IMP] [GO:0010218 "response to far red light" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0042753 "positive regulation of circadian rhythm"
evidence=IMP] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0009630 "gravitropism"
evidence=RCA] [GO:0009639 "response to red or far red light"
evidence=RCA] InterPro:IPR001000 InterPro:IPR006564
InterPro:IPR007527 PROSITE:PS50966 SMART:SM00575 INTERPRO:IPR004330
Pfam:PF03101 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0045893 GO:GO:0046872 GO:GO:0005975 GO:GO:0007623
GO:GO:0004553 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
GO:GO:0010218 GO:GO:0009585 GO:GO:0042753 HOGENOM:HOG000090708
InterPro:IPR018289 Pfam:PF10551 EMBL:AP001306 IPI:IPI00519965
RefSeq:NP_001118673.1 RefSeq:NP_188856.2 UniGene:At.27725
STRING:Q9LIE5 PaxDb:Q9LIE5 PRIDE:Q9LIE5 EnsemblPlants:AT3G22170.1
EnsemblPlants:AT3G22170.2 GeneID:821781 KEGG:ath:AT3G22170
TAIR:At3g22170 eggNOG:NOG45392 InParanoid:Q9LIE5 OMA:ITHAERV
PhylomeDB:Q9LIE5 ProtClustDB:PLN03097 Genevestigator:Q9LIE5
Uniprot:Q9LIE5
Length = 839
Score = 163 (62.4 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 39/112 (34%), Positives = 55/112 (49%)
Query: 1 MEFDSEDAARKFYMGYARRMGFVVRIMQRRRSRTDGTTLARRLGCNKQGFSPN-SKGTNG 59
MEF+S A FY Y+R MGF I RRS+T + + C++ G K N
Sbjct: 74 MEFESHGEAYSFYQEYSRAMGFNTAIQNSRRSKTTREFIDAKFACSRYGTKREYDKSFNR 133
Query: 60 PEKK-----P------RPSAREGCKATILVKMEKSGKWVVTRFIKDHNHPLV 100
P + P R A+ CKA++ VK GKWV+ F+++HNH L+
Sbjct: 134 PRARQSKQDPENMAGRRTCAKTDCKASMHVKRRPDGKWVIHSFVREHNHELL 185
Score = 39 (18.8 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 144 VEEQTEELSSKIQVIVDNIRKVESEMLKSFLQ 175
V E EL Q + + RK+ + M K F +
Sbjct: 177 VREHNHELLPA-QAVSEQTRKIYAAMAKQFAE 207
>TAIR|locus:2014639 [details] [associations]
symbol:FRS4 "FAR1-related sequence 4" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
EMBL:AC009978 EMBL:AC012394 HOGENOM:HOG000090708 InterPro:IPR018289
Pfam:PF10551 EMBL:BT010456 EMBL:AK221406 IPI:IPI00535818
IPI:IPI00657192 PIR:G96790 RefSeq:NP_001031286.1 RefSeq:NP_177759.1
UniGene:At.34672 PaxDb:Q6NQJ7 PRIDE:Q6NQJ7 GeneID:843965
KEGG:ath:AT1G76320 TAIR:At1g76320 eggNOG:NOG261993
InParanoid:Q9SGQ3 OMA:KIGCKAS ProtClustDB:CLSN2682748
Genevestigator:Q6NQJ7 Uniprot:Q6NQJ7
Length = 732
Score = 173 (66.0 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 50/185 (27%), Positives = 84/185 (45%)
Query: 1 MEFDSEDAARKFYMGYARRMGFVVRIMQRRRSRTDGTTLARRLGCNKQGFSPNSKGTNGP 60
MEF++ + A FY YA+ +GF + RRSR + + C + G SK +
Sbjct: 1 MEFETHEDAYLFYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYG----SKQQSDD 56
Query: 61 EKKPRPSAREGCKATILVKMEKSGKWVVTRFIKDHNHPLVVTANGY-----ST--VGDKD 113
PR S + GCKA++ VK GKW V F+K+HNH L+ Y +T V D
Sbjct: 57 AINPRASPKIGCKASMHVKRRPDGKWYVYSFVKEHNHDLLPEQAHYFRSHRNTELVKSND 116
Query: 114 KKIXXXXXXXXXXXXXCAAYREKLF--NFMNNVEEQTEEL---SSKIQVIVDNIRKVESE 168
++ +AY + F +M N ++ L + +++++ + +++ E
Sbjct: 117 SRLRRKKNTPLTDCKHLSAYHDLDFIDGYMRNQHDKGRRLVLDTGDAEILLEFLMRMQEE 176
Query: 169 MLKSF 173
K F
Sbjct: 177 NPKFF 181
>TAIR|locus:2059304 [details] [associations]
symbol:FRS3 "FAR1-related sequence 3" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR006564 InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966
SMART:SM00575 INTERPRO:IPR004330 Pfam:PF03101 GO:GO:0009506
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872
GO:GO:0008270 EMBL:AC005623 InterPro:IPR018289 Pfam:PF10551
EMBL:AY057491 EMBL:BT002690 IPI:IPI00526037 IPI:IPI00657216
PIR:H84668 RefSeq:NP_001031428.1 RefSeq:NP_565636.1
RefSeq:NP_850098.1 UniGene:At.22269 IntAct:Q9ZVC9 PaxDb:Q9ZVC9
PRIDE:Q9ZVC9 EnsemblPlants:AT2G27110.1 EnsemblPlants:AT2G27110.2
GeneID:817253 KEGG:ath:AT2G27110 TAIR:At2g27110 eggNOG:NOG302035
HOGENOM:HOG000241939 InParanoid:Q9ZVC9 OMA:LWPRQDE PhylomeDB:Q9ZVC9
ProtClustDB:CLSN2688464 Genevestigator:Q9ZVC9 Uniprot:Q9ZVC9
Length = 851
Score = 148 (57.2 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 37/99 (37%), Positives = 55/99 (55%)
Query: 1 MEFDSEDAARKFYMGYARRMGFVVRIMQRRRSRTDGTTLARRLGCNKQGFSPNSKGTNGP 60
MEF+SE A+ FY Y+R++GF +++ R TDG+ R C S +SK
Sbjct: 53 MEFNSEKEAKSFYDEYSRQLGFTSKLLPR----TDGSVSVREFVC-----SSSSK----- 98
Query: 61 EKKPRPSAREGCKATILVKMEKSGKWVVTRFIKDHNHPL 99
K R S E C A + ++++ KWVVT+F+K+H H L
Sbjct: 99 RSKRRLS--ESCDAMVRIELQGHEKWVVTKFVKEHTHGL 135
>TAIR|locus:2016259 [details] [associations]
symbol:FRS8 "FAR1-related sequence 8" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0050665
"hydrogen peroxide biosynthetic process" evidence=RCA]
InterPro:IPR006564 InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966
SMART:SM00575 INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
EMBL:AC009322 EMBL:AC011717 InterPro:IPR018289 Pfam:PF10551
HOGENOM:HOG000112651 IPI:IPI00534750 PIR:E96831 RefSeq:NP_178118.2
UniGene:At.52575 PRIDE:Q9S793 EnsemblPlants:AT1G80010.1
GeneID:844341 KEGG:ath:AT1G80010 TAIR:At1g80010 eggNOG:NOG311954
InParanoid:Q9S793 OMA:FAIRVKS Genevestigator:Q9S793 Uniprot:Q9S793
Length = 725
Score = 137 (53.3 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 34/97 (35%), Positives = 46/97 (47%)
Query: 1 MEFDSEDAARKFYMGYARRMGFVVRIMQRRRSRTDGTTLARRLGCNKQGFSPNSKGTNGP 60
MEF+S D A FY YAR +GF +R+ R L CN QGF K +
Sbjct: 99 MEFESYDDAYSFYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCQGFKL-LKDAHSR 157
Query: 61 EKKPRPSAREGCKATILVKMEKSGKWVVTRFIKDHNH 97
K+ R GC+A I +++ +W V + DHNH
Sbjct: 158 RKE----TRTGCQAMIRLRLIHFDRWKVDQVKLDHNH 190
>TAIR|locus:2012828 [details] [associations]
symbol:FRS11 "FAR1-related sequence 11" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
EMBL:AC005489 InterPro:IPR018289 Pfam:PF10551 HOGENOM:HOG000006468
ProtClustDB:CLSN2687754 EMBL:AF424595 EMBL:BT000486 IPI:IPI00517858
RefSeq:NP_563865.1 UniGene:At.26302 IntAct:Q9SY66 PaxDb:Q9SY66
PRIDE:Q9SY66 EnsemblPlants:AT1G10240.1 GeneID:837563
KEGG:ath:AT1G10240 TAIR:At1g10240 eggNOG:NOG258635
InParanoid:Q9SY66 OMA:IRRHRTE PhylomeDB:Q9SY66
Genevestigator:Q9SY66 Uniprot:Q9SY66
Length = 680
Score = 136 (52.9 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 40/123 (32%), Positives = 62/123 (50%)
Query: 3 FDSEDAARKFYMGYARRMGFVVRIMQRRRSRTDGTT--LARR-LGCNKQGFSPNSKGTNG 59
F + D A +FY +A+R GF +R + R DG L RR C++ G +P + G
Sbjct: 54 FLTHDTAYEFYSTFAKRCGFSIR--RHRTEGKDGVGKGLTRRYFVCHRAGNTPIKTLSEG 111
Query: 60 PEKKPRPSAREGCKATILV-KMEKSG--KWVVTRFIKDHNHPLVVTAN-----GYSTVGD 111
++ R S+R GC+A + + K+ + G +W VT F HNH L+ Y ++ D
Sbjct: 112 KPQRNRRSSRCGCQAYLRISKLTELGSTEWRVTGFANHHNHELLEPNQVRFLPAYRSISD 171
Query: 112 KDK 114
DK
Sbjct: 172 ADK 174
>TAIR|locus:2035144 [details] [associations]
symbol:FRS6 "FAR1-related sequence 6" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
EMBL:AC008016 InterPro:IPR018289 Pfam:PF10551 EMBL:AY080775
EMBL:AY133776 IPI:IPI00532825 PIR:G96565 RefSeq:NP_175661.1
UniGene:At.37583 PRIDE:Q9SSQ4 EnsemblPlants:AT1G52520.1
GeneID:841683 KEGG:ath:AT1G52520 TAIR:At1g52520 eggNOG:NOG287780
HOGENOM:HOG000112651 InParanoid:Q9SSQ4 OMA:LELMCCK PhylomeDB:Q9SSQ4
ProtClustDB:CLSN2679731 Genevestigator:Q9SSQ4 Uniprot:Q9SSQ4
Length = 703
Score = 127 (49.8 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 35/99 (35%), Positives = 44/99 (44%)
Query: 1 MEFDSEDAARKFYMGYARRMGFVVRIMQRRRSRTDGTTLARRLGCNKQGFSPNSKGTNGP 60
MEF+S D A +Y YA +GF VR+ R L C+ QGF K N
Sbjct: 89 MEFESYDDAYNYYNCYASEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGF----KRINDV 144
Query: 61 EKKPRPSAREGCKATILVKMEKSGKWVVTRFIKDHNHPL 99
+ R R GC A I ++ S +W V DHNH L
Sbjct: 145 NRV-RKETRTGCPAMIRMRQVDSKRWRVVEVTLDHNHLL 182
>TAIR|locus:2182778 [details] [associations]
symbol:FRS10 "FAR1-related sequence 10" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270 EMBL:AF262043
InterPro:IPR018289 Pfam:PF10551 IPI:IPI00525509 RefSeq:NP_198205.2
UniGene:At.55070 PaxDb:Q9LKR4 EnsemblPlants:AT5G28530.1
GeneID:832948 KEGG:ath:AT5G28530 TAIR:At5g28530 eggNOG:NOG320567
HOGENOM:HOG000006468 OMA:DECAQAF PhylomeDB:Q9LKR4
ProtClustDB:CLSN2687754 Genevestigator:Q9LKR4 Uniprot:Q9LKR4
Length = 685
Score = 122 (48.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 32/101 (31%), Positives = 48/101 (47%)
Query: 3 FDSEDAARKFYMGYARRMGFVVRIMQRRRSRTDGTTLARRLGCNKQGFSPNSKGTNGPEK 62
F ++D A ++Y +AR+ GF +R + S+ G R C + GF+ K N
Sbjct: 61 FTTDDEAFEYYSTFARKSGFSIRKARSTESQNLGV-YRRDFVCYRSGFNQPRKKANVEHP 119
Query: 63 KPRPSAREGCKATI-LVKMEKSG--KWVVTRFIKDHNHPLV 100
+ R S R GC + L K G W V++F HNH L+
Sbjct: 120 RERKSVRCGCDGKLYLTKEVVDGVSHWYVSQFSNVHNHELL 160
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.132 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 175 162 0.00079 107 3 11 22 0.37 32
30 0.44 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 16
No. of states in DFA: 572 (61 KB)
Total size of DFA: 137 KB (2086 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.67u 0.16s 15.83t Elapsed: 00:00:01
Total cpu time: 15.67u 0.16s 15.83t Elapsed: 00:00:01
Start: Sat May 11 06:14:46 2013 End: Sat May 11 06:14:47 2013