Query 030575
Match_columns 175
No_of_seqs 176 out of 531
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 01:52:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030575.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030575hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 92.4 0.19 6.4E-06 33.8 4.4 32 70-101 43-75 (76)
2 1wj2_A Probable WRKY transcrip 91.1 0.27 9.3E-06 33.2 4.1 31 70-100 46-77 (78)
3 2rpr_A Flywch-type zinc finger 90.6 0.49 1.7E-05 31.9 5.2 23 71-99 51-73 (87)
4 2jya_A AGR_C_3324P, uncharacte 62.3 3.9 0.00013 29.0 2.0 24 1-28 56-79 (106)
5 2lju_A Putative oxidoreductase 58.0 5 0.00017 28.5 2.0 24 1-28 64-87 (108)
6 3lo3_A Uncharacterized conserv 53.0 5.2 0.00018 27.2 1.3 21 1-21 58-78 (94)
7 2fiu_A Conserved hypothetical 49.2 6.5 0.00022 27.0 1.3 21 1-21 59-79 (99)
8 2ayu_A Nucleosome assembly pro 44.8 4.5 0.00016 35.2 -0.0 48 122-169 59-106 (417)
9 3bsu_A Ribonuclease H1, RNAse 43.0 12 0.0004 22.9 1.7 13 2-14 37-49 (53)
10 2v66_B Nuclear distribution pr 35.8 81 0.0028 22.2 5.4 25 143-167 39-63 (111)
11 3n06_A Prolactin, PRL; PH depe 33.6 97 0.0033 23.4 6.0 56 116-171 64-119 (186)
12 3mq9_A Bone marrow stromal ant 33.3 68 0.0023 27.1 5.7 42 130-171 420-461 (471)
13 3ct8_A Protein BH2160, putativ 30.7 49 0.0017 22.9 3.7 24 4-27 29-52 (146)
14 2qfa_B Borealin; three-helical 29.2 37 0.0013 21.6 2.4 34 134-167 4-38 (62)
15 3hhl_A RPA0582; alpha-beta-bar 25.3 26 0.00088 25.7 1.3 25 1-25 93-117 (143)
16 2l69_A Rossmann 2X3 fold prote 24.3 60 0.0021 22.6 3.0 29 2-30 7-35 (134)
17 2v71_A Nuclear distribution pr 21.1 1.6E+02 0.0053 22.7 5.1 30 139-168 88-117 (189)
18 4afl_A P29ING4, inhibitor of g 21.0 85 0.0029 21.2 3.3 33 139-171 4-36 (104)
19 1wi9_A Protein C20ORF116 homol 20.9 85 0.0029 20.4 3.0 21 149-169 29-49 (72)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=92.38 E-value=0.19 Score=33.80 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=26.3
Q ss_pred ccCcceeEEEee-eCCeEEEEEecccCCCCCCC
Q 030575 70 EGCKATILVKME-KSGKWVVTRFIKDHNHPLVV 101 (175)
Q Consensus 70 tgC~A~~~v~~~-~~g~W~V~~~~~eHNH~L~~ 101 (175)
.||+|+=.|... +++.-.++-...+|||++.+
T Consensus 43 ~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 43 PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 489999888775 46788888999999999854
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=91.14 E-value=0.27 Score=33.16 Aligned_cols=31 Identities=35% Similarity=0.454 Sum_probs=25.9
Q ss_pred ccCcceeEEEee-eCCeEEEEEecccCCCCCC
Q 030575 70 EGCKATILVKME-KSGKWVVTRFIKDHNHPLV 100 (175)
Q Consensus 70 tgC~A~~~v~~~-~~g~W~V~~~~~eHNH~L~ 100 (175)
.||+|+=.|... .++.-+++-...+||||+.
T Consensus 46 ~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 46 PGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp SSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 499999888875 4677888889999999974
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=90.59 E-value=0.49 Score=31.87 Aligned_cols=23 Identities=17% Similarity=0.522 Sum_probs=16.5
Q ss_pred cCcceeEEEeeeCCeEEEEEecccCCCCC
Q 030575 71 GCKATILVKMEKSGKWVVTRFIKDHNHPL 99 (175)
Q Consensus 71 gC~A~~~v~~~~~g~W~V~~~~~eHNH~L 99 (175)
+|+|++..... + | .+...||||.
T Consensus 51 kCrARi~T~~~--~---~-~~~~~HnH~p 73 (87)
T 2rpr_A 51 GCRSRAITQGH--R---I-MVMRSHCHQP 73 (87)
T ss_dssp CCCCEEEEETT--E---E-EECSCCSSCC
T ss_pred CCCEEEEEcCC--C---E-ECCCCcCCCC
Confidence 89999887642 2 3 2567899974
No 4
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=62.31 E-value=3.9 Score=28.99 Aligned_cols=24 Identities=29% Similarity=0.678 Sum_probs=19.9
Q ss_pred CccCCHHHHHHHHHHHhhhcCeEEEEee
Q 030575 1 MEFDSEDAARKFYMGYARRMGFVVRIMQ 28 (175)
Q Consensus 1 M~F~s~eeA~~FY~~YA~~~GF~ir~~~ 28 (175)
|.|+|.|+|.. ||.+.|..-.+..
T Consensus 56 L~F~skE~Aia----yAek~G~~y~V~e 79 (106)
T 2jya_A 56 LTFETQEQAEA----YAQRKGIEYRVIL 79 (106)
T ss_dssp EEESSHHHHHH----HHHHHTCEEEECC
T ss_pred EecCCHHHHHH----HHHHcCCEEEEeC
Confidence 57999999985 6889998887764
No 5
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=57.99 E-value=5 Score=28.47 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.0
Q ss_pred CccCCHHHHHHHHHHHhhhcCeEEEEee
Q 030575 1 MEFDSEDAARKFYMGYARRMGFVVRIMQ 28 (175)
Q Consensus 1 M~F~s~eeA~~FY~~YA~~~GF~ir~~~ 28 (175)
|.|+|.|+|.. ||.+.|..-.+..
T Consensus 64 L~F~skE~Aia----yAek~G~~y~V~e 87 (108)
T 2lju_A 64 LSFTTRELAIA----YAVAHKIDYTVLQ 87 (108)
T ss_dssp EEESSHHHHHH----HHHHTTCEEEEEC
T ss_pred EecCCHHHHHH----HHHHcCCEEEEec
Confidence 57999999985 7899998887764
No 6
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=52.95 E-value=5.2 Score=27.17 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=16.8
Q ss_pred CccCCHHHHHHHHHHHhhhcC
Q 030575 1 MEFDSEDAARKFYMGYARRMG 21 (175)
Q Consensus 1 M~F~s~eeA~~FY~~YA~~~G 21 (175)
++|+|.++|..||+.=+...-
T Consensus 58 ieFps~~aa~a~y~SpeYq~a 78 (94)
T 3lo3_A 58 LEFPSREDAYNWYHSEEYQAL 78 (94)
T ss_dssp EEESSHHHHHHHHHSHHHHTT
T ss_pred EECCCHHHHHHHHCCHHHHHH
Confidence 479999999999997555543
No 7
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=49.17 E-value=6.5 Score=26.95 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=16.7
Q ss_pred CccCCHHHHHHHHHHHhhhcC
Q 030575 1 MEFDSEDAARKFYMGYARRMG 21 (175)
Q Consensus 1 M~F~s~eeA~~FY~~YA~~~G 21 (175)
++|+|.++|..||+.=+...-
T Consensus 59 ieFpS~~aa~~~~~s~~Yq~a 79 (99)
T 2fiu_A 59 IEFPSVQHAIDCYNSPEYQAA 79 (99)
T ss_dssp EEESSHHHHHHHHHSHHHHHH
T ss_pred EECCCHHHHHHHHcCHHHHHH
Confidence 379999999999997555443
No 8
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=44.84 E-value=4.5 Score=35.16 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhHh
Q 030575 122 ELERQEQLCAAYREKLFNFMNNVEEQTEELSSKIQVIVDNIRKVESEM 169 (175)
Q Consensus 122 el~~~~~~~~~~~~~l~~il~~~~g~~~~Ls~k~qdi~~~~r~~e~~~ 169 (175)
+|..+-...++-+..|.++.....|..+.||..|+..++.|++|+.+.
T Consensus 59 ~~~~~p~~~~~~~~~l~~l~~~~~~~i~sLp~~v~~rI~aLk~lQ~e~ 106 (417)
T 2ayu_A 59 ILANQPLLLQSIQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSEL 106 (417)
T ss_dssp -----------CCSTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHhhccccchhhcCCHHHHHHHHHHHHHHHHH
Confidence 344343344445566766666667778899999999999999888664
No 9
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=43.04 E-value=12 Score=22.90 Aligned_cols=13 Identities=38% Similarity=0.573 Sum_probs=11.7
Q ss_pred ccCCHHHHHHHHH
Q 030575 2 EFDSEDAARKFYM 14 (175)
Q Consensus 2 ~F~s~eeA~~FY~ 14 (175)
.|.|.+||.+|++
T Consensus 37 ~F~t~~eA~~~l~ 49 (53)
T 3bsu_A 37 KFATEDEAWAFVR 49 (53)
T ss_dssp EESSHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 5999999999985
No 10
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=35.85 E-value=81 Score=22.24 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=11.7
Q ss_pred HhhccccccchhHHHHHHHHHHHHh
Q 030575 143 NVEEQTEELSSKIQVIVDNIRKVES 167 (175)
Q Consensus 143 ~~~g~~~~Ls~k~qdi~~~~r~~e~ 167 (175)
.+....+.|-..-+.+..++|+||.
T Consensus 39 ~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 39 VLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555543
No 11
>3n06_A Prolactin, PRL; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3nce_A 3mzg_A 3ncc_A 2q98_A 3d48_P 3ncb_A 3n0p_A 3ncf_A 1n9d_A 1rw5_A 3npz_A 3ew3_A
Probab=33.59 E-value=97 Score=23.41 Aligned_cols=56 Identities=13% Similarity=0.057 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhHhhh
Q 030575 116 IEELTLELERQEQLCAAYREKLFNFMNNVEEQTEELSSKIQVIVDNIRKVESEMLK 171 (175)
Q Consensus 116 I~el~~el~~~~~~~~~~~~~l~~il~~~~g~~~~Ls~k~qdi~~~~r~~e~~~~~ 171 (175)
..+|..-+..-.+.=.-|-..|...+..+.|-++.+.-|+++|.+.+++|+...+.
T Consensus 64 ~~~LL~~~l~Ll~SW~~PL~~L~~~~~~l~~~~~~il~Kakei~e~~~~L~egi~~ 119 (186)
T 3n06_A 64 QKDFLSLIVSILRSWNEPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLERMEL 119 (186)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555555567888898889999999999999999999999999876654
No 12
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=33.33 E-value=68 Score=27.15 Aligned_cols=42 Identities=10% Similarity=0.266 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhHhhh
Q 030575 130 CAAYREKLFNFMNNVEEQTEELSSKIQVIVDNIRKVESEMLK 171 (175)
Q Consensus 130 ~~~~~~~l~~il~~~~g~~~~Ls~k~qdi~~~~r~~e~~~~~ 171 (175)
++..-+.++.++..++--...--.+|+.+-+-++++|.+-++
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (471)
T 3mq9_A 420 AATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQD 461 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455555555542222225777777778877777665
No 13
>3ct8_A Protein BH2160, putative glyoxalase; NP_243026.1, glyoxalase/bleomycin resis protein/dioxygenase superfamily, structural genomics; HET: UNL; 2.10A {Bacillus halodurans c-125}
Probab=30.75 E-value=49 Score=22.88 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHhhhcCeEEEEe
Q 030575 4 DSEDAARKFYMGYARRMGFVVRIM 27 (175)
Q Consensus 4 ~s~eeA~~FY~~YA~~~GF~ir~~ 27 (175)
.+.++|..||..+....||.+...
T Consensus 29 ~Dl~~a~~FY~~~~~~LG~~~~~~ 52 (146)
T 3ct8_A 29 DHLEESIAFWDWLLGELGYEDYQS 52 (146)
T ss_dssp SCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHhhhhhCCCEEEEe
Confidence 468999999999999999998643
No 14
>2qfa_B Borealin; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=29.16 E-value=37 Score=21.56 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhccccccchhHH-HHHHHHHHHHh
Q 030575 134 REKLFNFMNNVEEQTEELSSKIQ-VIVDNIRKVES 167 (175)
Q Consensus 134 ~~~l~~il~~~~g~~~~Ls~k~q-di~~~~r~~e~ 167 (175)
.+.|.+||+|+..+........+ +.-+-++++++
T Consensus 4 ~~KLasFLkDFD~ev~~~~~~~~~~~~~llk~i~~ 38 (62)
T 2qfa_B 4 RRKLASFLKDFDREVEIRIKQIESDRQNLLKEVDN 38 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888887776666666 33334444443
No 15
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=25.34 E-value=26 Score=25.65 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=19.0
Q ss_pred CccCCHHHHHHHHHHHhhhcCeEEE
Q 030575 1 MEFDSEDAARKFYMGYARRMGFVVR 25 (175)
Q Consensus 1 M~F~s~eeA~~FY~~YA~~~GF~ir 25 (175)
++|+|.++|..||+.=++..--..|
T Consensus 93 ieFPS~~aa~a~y~SpeYq~a~~~R 117 (143)
T 3hhl_A 93 AEYPSVAAFVEMIRDPVYREAVKHR 117 (143)
T ss_dssp EEESCHHHHHHHHHCHHHHHHHHHH
T ss_pred EECCCHHHHHHHHcCHHHHHHHHHH
Confidence 4799999999999986666543333
No 16
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=24.33 E-value=60 Score=22.59 Aligned_cols=29 Identities=17% Similarity=0.429 Sum_probs=24.4
Q ss_pred ccCCHHHHHHHHHHHhhhcCeEEEEeeee
Q 030575 2 EFDSEDAARKFYMGYARRMGFVVRIMQRR 30 (175)
Q Consensus 2 ~F~s~eeA~~FY~~YA~~~GF~ir~~~~~ 30 (175)
.|.+.||.-.=|..--+..||.+|.-++-
T Consensus 7 vfstdeetlrkfkdiikkngfkvrtvrsp 35 (134)
T 2l69_A 7 VFSTDEETLRKFKDIIKKNGFKVRTVRSP 35 (134)
T ss_dssp ECCCCHHHHHHHHHHHHHTTCEEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHhcCceEEEecCH
Confidence 58888888888899999999999976543
No 17
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=21.08 E-value=1.6e+02 Score=22.68 Aligned_cols=30 Identities=10% Similarity=0.204 Sum_probs=20.9
Q ss_pred HHHHHhhccccccchhHHHHHHHHHHHHhH
Q 030575 139 NFMNNVEEQTEELSSKIQVIVDNIRKVESE 168 (175)
Q Consensus 139 ~il~~~~g~~~~Ls~k~qdi~~~~r~~e~~ 168 (175)
.-++.+......|-...+.+..++|+||..
T Consensus 88 ~~~~~Lq~el~~l~~~~~~l~~~ireLEq~ 117 (189)
T 2v71_A 88 KQVSVLEDDLSQTRAIKEQLHKYVRELEQA 117 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666666667777777778888888753
No 18
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=21.04 E-value=85 Score=21.17 Aligned_cols=33 Identities=12% Similarity=0.225 Sum_probs=24.8
Q ss_pred HHHHHhhccccccchhHHHHHHHHHHHHhHhhh
Q 030575 139 NFMNNVEEQTEELSSKIQVIVDNIRKVESEMLK 171 (175)
Q Consensus 139 ~il~~~~g~~~~Ls~k~qdi~~~~r~~e~~~~~ 171 (175)
.+|.+.-+..++||..++....-+|++...-++
T Consensus 4 ~yledyld~ie~LP~El~r~~~~irelD~~~~~ 36 (104)
T 4afl_A 4 MYLEHYLDSIENLPFELQRNFQLMRDLDQRTED 36 (104)
T ss_dssp HHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 356677777888888888888888887766554
No 19
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=20.90 E-value=85 Score=20.44 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=18.0
Q ss_pred cccchhHHHHHHHHHHHHhHh
Q 030575 149 EELSSKIQVIVDNIRKVESEM 169 (175)
Q Consensus 149 ~~Ls~k~qdi~~~~r~~e~~~ 169 (175)
.+...+.+|+++-++.||++.
T Consensus 29 ~~F~l~t~~~i~RI~~Le~~g 49 (72)
T 1wi9_A 29 FQMGLRTQDAINRIQDLLTEG 49 (72)
T ss_dssp HHHCSCHHHHHHHHHHHHHHS
T ss_pred HHhCCChHHHHHHHHHHHHCC
Confidence 467889999999999999874
Done!