BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030577
(175 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SYM2|STHY_ARATH Probable salt tolerance-like protein At1g78600 OS=Arabidopsis
thaliana GN=At1g78600 PE=1 SV=2
Length = 299
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 21/116 (18%)
Query: 3 NKLASRHVRVGL-ANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRY 61
NKLA +H RV L A+ S +P+CDIC+ A FF+C D + LC +CD+ +H T +
Sbjct: 36 NKLAGKHQRVPLSASASSIPKCDICQEASGFFFCLQDRALLCRKCDVAIH-----TVNPH 90
Query: 62 LLLRQRVEFPGDKAGRLEELALQSLDQNKITRD---------QTQPFRITARENQQ 108
+ QR G K G L+S+D T+ +T+PF + E Q+
Sbjct: 91 VSAHQRFLLTGIKVG------LESIDTGPSTKSSPTNDDKTMETKPFVQSIPEPQK 140
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 22 RCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGK 55
+C++CE A A C D ++LC CD +H K
Sbjct: 4 QCNVCEAAEATVLCCADEAALCWACDEKIHAANK 37
>sp|Q9LQZ7|STHX_ARATH Probable salt tolerance-like protein At1g75540 OS=Arabidopsis
thaliana GN=At1g75540 PE=1 SV=1
Length = 331
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 3 NKLASRHVRVGLANPSDV----PRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT- 57
NKLAS+H+R L PS P CDIC++ A +C+ D + LC CD ++H + T
Sbjct: 36 NKLASKHLRFSLLYPSSSNTSSPLCDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTK 95
Query: 58 -HGRYLL 63
H R+LL
Sbjct: 96 KHDRFLL 102
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 22 RCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGK--RTHGRYLLL 64
RCD+C+ A +C D +SLC CD VH K H R+ LL
Sbjct: 4 RCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLL 48
>sp|Q96288|STO_ARATH Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1
Length = 248
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 3 NKLASRHVRVGLANPS-DVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT--HG 59
NKLAS+H R+ L + S PRCDIC+ AF +C D + LC CD ++HV R+ H
Sbjct: 36 NKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQ 95
Query: 60 RYL 62
R+L
Sbjct: 96 RFL 98
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 22 RCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGK--RTHGRYLLLRQRVEFP 71
+CD+CE APA C D ++LC QCD+ +H K H R L +FP
Sbjct: 4 QCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFP 55
>sp|Q0IGM7|BBX20_ARATH B-box zinc finger protein 20 OS=Arabidopsis thaliana GN=BBX20 PE=1
SV=1
Length = 242
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 3 NKLASRHVRVGLANPS--DVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT--H 58
NKLA +H+R L +P+ D P CDIC A +C+ D + LC +CD+ +H + T H
Sbjct: 36 NKLAGKHLRFSLTSPTFKDAPLCDICGERRALLFCQEDRAILCRECDIPIHQANEHTKKH 95
Query: 59 GRYLLLRQRV 68
R+LL ++
Sbjct: 96 NRFLLTGVKI 105
>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana
GN=COL1 PE=1 SV=1
Length = 355
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Query: 3 NKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGG--KRTHGR 60
N+LASRH RV + C CE APA F+C+ D +SLC CD +H R H R
Sbjct: 43 NRLASRHERVRV--------CQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQR 94
Query: 61 YLLL 64
+L
Sbjct: 95 VPIL 98
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 23 CDICENAPAFFYCEIDGSSLCLQCDMTVHVGGK 55
CD C +A YC D + LC CD VH +
Sbjct: 12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANR 44
>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana
GN=COL3 PE=1 SV=1
Length = 294
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 10/60 (16%)
Query: 3 NKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGG--KRTHGR 60
NKLASRH RV L C++CE APA C+ D ++LC+ CD +H R H R
Sbjct: 39 NKLASRHERVWL--------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHER 90
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 23 CDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT--HGRYLL 63
CD C++ A +C D + LC CD +H K H R L
Sbjct: 8 CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL 50
>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana
GN=COL4 PE=2 SV=2
Length = 362
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 8/49 (16%)
Query: 3 NKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVH 51
NKLASRH RV + C++CE APA C+ D ++LC+ CD +H
Sbjct: 37 NKLASRHARVWM--------CEVCEQAPAHVTCKADAAALCVTCDRDIH 77
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 23 CDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT--HGRYLLLRQRVEFPGDKAGRLEE 80
CD C++A A YC D + LCL CD VH K H R + + P + +
Sbjct: 6 CDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADA 65
Query: 81 LAL 83
AL
Sbjct: 66 AAL 68
>sp|Q39057|CONS_ARATH Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1
SV=1
Length = 373
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Query: 3 NKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGG--KRTHGR 60
N++ASRH RV + C+ CE APA F CE D +SLC CD VH R H R
Sbjct: 51 NRVASRHKRVRV--------CESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQR 102
Query: 61 YLLL 64
+L
Sbjct: 103 VPIL 106
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 23 CDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLR 65
CD C + YC D + LC+ CD VH R R+ +R
Sbjct: 20 CDTCRSNACTVYCHADSAYLCMSCDAQVH-SANRVASRHKRVR 61
>sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2
PE=1 SV=1
Length = 347
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Query: 3 NKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGG--KRTHGR 60
N++ASRH RV + C CE+APA F C+ D +SLC CD +H R H R
Sbjct: 47 NRVASRHERVRV--------CQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQR 98
Query: 61 YLLL 64
+L
Sbjct: 99 VPIL 102
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 23 CDICENAPAFFYCEIDGSSLCLQCDMTVHVGGK 55
CD C +A YCE D + LC CD VH +
Sbjct: 16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANR 48
>sp|Q9SID1|STH_ARATH Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1
SV=2
Length = 238
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 3 NKLASRHVRVGLANPS-DVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT--HG 59
NKLAS+H R+ L + S P CDIC AF +C D + LC CD H R+ H
Sbjct: 36 NKLASKHQRLFLDSLSTKFPPCDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQ 95
Query: 60 RYLLLRQRV 68
R+L RV
Sbjct: 96 RFLATGIRV 104
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 22 RCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGK--RTHGRYLLLRQRVEFP 71
+CD+CE APA C D ++LC +CD+ VH K H R L +FP
Sbjct: 4 QCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFP 55
>sp|O82256|COL13_ARATH Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana
GN=COL13 PE=2 SV=1
Length = 332
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 23 CDICENAPAFFYCEIDGSSLCLQCDMTVHVGGK--RTHGRYLL 63
CD C+++ A YC+ D + LCL CD VHV + H R LL
Sbjct: 13 CDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLL 55
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 3 NKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGR 60
N+L ++H R L CD C +P+ +CE + S LC CD H H R
Sbjct: 44 NQLFAKHFRSLL--------CDSCNESPSSLFCETERSVLCQNCDWQHHTASSSLHSR 93
>sp|O23379|COL11_ARATH Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis
thaliana GN=COL11 PE=3 SV=2
Length = 330
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 22 RCDICENAPAFFYCEIDGSSLCLQCDMTVHVGG--KRTHGRYLLLRQ 66
RCD C A YC+ D + LCL CD+ VH + H R LL +
Sbjct: 4 RCDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEK 50
>sp|Q9LJ44|COL12_ARATH Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana
GN=COL12 PE=2 SV=2
Length = 364
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 21 PRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTH 58
P+CD C + A YC+ D + LCL CD+ VH +H
Sbjct: 3 PKCDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSH 40
>sp|Q9FHH8|COL5_ARATH Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana
GN=COL5 PE=2 SV=2
Length = 355
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Query: 7 SRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVH 51
+RH RV + C++CE APA C+ D ++LC+ CD +H
Sbjct: 53 TRHERVWV--------CEVCEQAPAAVTCKADAAALCVSCDADIH 89
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 23 CDICENAPAFFYCEIDGSSLCLQCDMTVH 51
CD C++ A +C +D + LC+ CD +H
Sbjct: 22 CDACKSVTAAVFCRVDSAFLCIACDTRIH 50
>sp|Q9FDX8|HD1_ORYSJ Zinc finger protein HD1 OS=Oryza sativa subsp. japonica GN=HD1
PE=2 SV=1
Length = 395
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 23 CDICENAPAFFYCEIDGSSLCLQCDMTVHVGGK 55
CD C AP+ YC D + LC CD VH +
Sbjct: 35 CDGCRAAPSVVYCRADAAYLCASCDARVHAANR 67
>sp|Q9SSE5|COL9_ARATH Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana
GN=COL9 PE=2 SV=1
Length = 372
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 23 CDICENAPAFFYCEIDGSSLCLQCDMTVHVGG--KRTHGRYLLLRQ 66
CD C + YC D + LCL CD +VH + H R L+ +
Sbjct: 5 CDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCER 50
>sp|Q9C7E8|COL15_ARATH Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana
GN=COL15 PE=2 SV=1
Length = 433
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 14 LANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGG--KRTHGR 60
+++ VP CD C A +C D + LCL CD VH R H R
Sbjct: 1 MSSSERVP-CDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVR 48
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 3 NKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYL 62
N L+ +HVR + CD C N P C D LC +CD VH +
Sbjct: 40 NLLSRKHVRSQI--------CDNCGNEPVSVRCFTDNLILCQECDWDVHGSCSVSDAH-- 89
Query: 63 LLRQRVEFPGDKAGRLEELALQSLDQNKITRDQ 95
+R VE LE AL LD + +D+
Sbjct: 90 -VRSAVEGFSGCPSALELAALWGLDLEQGRKDE 121
>sp|O22800|COL14_ARATH Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana
GN=COL14 PE=2 SV=2
Length = 402
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 12 VGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVH 51
+G + V C+ C A +C D + LCL CD VH
Sbjct: 1 MGTSTTESVVACEFCGERTAVLFCRADTAKLCLPCDQHVH 40
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 3 NKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVH--VGGKRTHGR 60
N L+ +HVR + CD C P C D LC +CD VH TH R
Sbjct: 43 NLLSRKHVRSQI--------CDNCSKEPVSVRCFTDNLVLCQECDWDVHGSCSSSATHER 94
>sp|Q9LUA9|COL10_ARATH Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana
GN=COL10 PE=1 SV=1
Length = 373
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 23 CDICENAPAFFYCEIDGSSLCLQCDMTVHVGG--KRTHGRYLL 63
CD C + YC D + LCL CD VH + H R L+
Sbjct: 5 CDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLV 47
>sp|Q9M9B3|COL8_ARATH Zinc finger protein CONSTANS-LIKE 8 OS=Arabidopsis thaliana
GN=COL8 PE=2 SV=2
Length = 319
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 21 PR-CDICENAPAFFYCEIDGSSLCLQCDMTVH 51
PR C++C N A +YC D + LC CD +VH
Sbjct: 18 PRACELCLNKHAVWYCASDDAFLCHVCDESVH 49
>sp|Q9C9F4|COLX_ARATH Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana
GN=At1g68190 PE=2 SV=1
Length = 356
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 23 CDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYL 62
C+ C+ A YC D ++LCL CD VH + GR+L
Sbjct: 14 CEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLS-GRHL 52
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 3 NKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGR 60
N L+ RH+R L CD C+N P C LC C+ H GG H R
Sbjct: 45 NSLSGRHLRTVL--------CDSCKNQPCVVRCFDHKMFLCHGCNDKFHGGGSSEHRR 94
>sp|Q8RWD0|COL16_ARATH Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana
GN=COL16 PE=2 SV=2
Length = 417
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 23 CDICENAPAFFYCEIDGSSLCLQCDMTVHVGG--KRTHGRYLL 63
CD C A +YC D + LC CD VH R H R L
Sbjct: 17 CDSCVKRRARWYCAADDAFLCQSCDSLVHSANPLARRHERVRL 59
>sp|Q8LG76|COL6_ARATH Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana
GN=COL6 PE=2 SV=2
Length = 406
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 23 CDICENAPAFFYCEIDGSSLCLQCDMTVH 51
CD C A +YC D + LC CD +VH
Sbjct: 17 CDSCVKRRARWYCAADDAFLCHACDGSVH 45
>sp|Q9HBF4|ZFYV1_HUMAN Zinc finger FYVE domain-containing protein 1 OS=Homo sapiens
GN=ZFYVE1 PE=1 SV=1
Length = 777
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 11/60 (18%)
Query: 9 HVRVGLANPSDVPRCDICENAP---------AFFYCEIDGSSLCLQCDMTVHVGG-KRTH 58
H R+ L P VP CD+C+ A C+ +LCL+C H GG KR H
Sbjct: 58 HERIRL-KPGHVPYCDLCKGLSGHLPGVRQRAIVRCQTCKINLCLECQKRTHSGGNKRRH 116
>sp|Q5RFL4|ZFYV1_PONAB Zinc finger FYVE domain-containing protein 1 OS=Pongo abelii
GN=ZFYVE1 PE=2 SV=1
Length = 789
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 11/60 (18%)
Query: 9 HVRVGLANPSDVPRCDICENAP---------AFFYCEIDGSSLCLQCDMTVHVGG-KRTH 58
H R+ L P VP CD+C+ A C+ +LCL+C H GG KR H
Sbjct: 58 HERIRL-KPGHVPYCDLCKGLSGHLPGVRQRAIVRCQTCKINLCLECQKRTHSGGNKRRH 116
>sp|O14157|MYO3_SCHPO Myosin type-2 heavy chain 2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=myo3 PE=1 SV=1
Length = 2104
Score = 30.8 bits (68), Expect = 5.1, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 107 QQNHRGSPVPMLDGNADGDGKVDNKLI 133
++ H G P+ +DGN D D K+DNKL+
Sbjct: 1263 EEKHSGDPLKRIDGNND-DRKIDNKLL 1288
>sp|Q9C9A9|COL7_ARATH Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana
GN=COL7 PE=2 SV=1
Length = 392
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 23 CDIC-ENAPAFFYCEIDGSSLCLQCDMTVH 51
CD C + + A +YC D + LC CD ++H
Sbjct: 22 CDACMKRSRASWYCPADDAFLCQSCDASIH 51
>sp|Q5E9G4|TRI10_BOVIN Tripartite motif-containing protein 10 OS=Bos taurus GN=TRIM10 PE=2
SV=1
Length = 489
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 15/100 (15%)
Query: 11 RVGLANPSDVPRCDIC--ENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRV 68
R+ L + D+ D+C +F+CE D LC+ C R H V
Sbjct: 84 RLKLVSQMDLDEEDVCPEHGEKVYFFCEDDEMQLCVVCR---EAWEHRAHT--------V 132
Query: 69 EFPGDKAGRLEELALQSLDQNKITRDQTQPFRITARENQQ 108
F D AG E + L+ + R++ Q I +REN++
Sbjct: 133 RFLEDAAGPYREQIQKCLECLRKEREEIQ--EIQSRENRR 170
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,012,264
Number of Sequences: 539616
Number of extensions: 3143559
Number of successful extensions: 5960
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 5907
Number of HSP's gapped (non-prelim): 54
length of query: 175
length of database: 191,569,459
effective HSP length: 110
effective length of query: 65
effective length of database: 132,211,699
effective search space: 8593760435
effective search space used: 8593760435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)