Query 030577
Match_columns 175
No_of_seqs 130 out of 555
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 01:55:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 96.1 0.0016 5.4E-08 46.1 1.3 42 20-61 3-49 (101)
2 2dja_A Midline-2; tripartite m 94.2 0.047 1.6E-06 37.5 3.8 60 7-70 3-65 (84)
3 2jun_A Midline-1; B-BOX, TRIM, 93.8 0.056 1.9E-06 38.0 3.7 58 3-64 40-100 (101)
4 2did_A Tripartite motif protei 92.6 0.12 3.9E-06 32.9 3.4 43 20-67 8-51 (53)
5 2d8v_A Zinc finger FYVE domain 91.6 0.17 5.7E-06 35.8 3.6 57 18-75 6-64 (67)
6 2d8u_A Ubiquitin ligase TRIM63 91.0 0.15 5.3E-06 33.2 2.8 47 20-70 8-55 (64)
7 2yvr_A Transcription intermedi 90.9 0.21 7.3E-06 31.2 3.3 44 20-67 6-49 (50)
8 2yrg_A Tripartite motif-contai 90.8 0.23 7.8E-06 32.6 3.4 42 21-67 15-57 (59)
9 2csv_A Tripartite motif protei 89.9 0.23 8E-06 33.3 3.0 46 19-69 17-62 (72)
10 2ffw_A Midline-1; B-BOX, ring 89.4 0.15 5.1E-06 35.5 1.8 41 19-59 29-74 (78)
11 3ddt_A E3 ubiquitin-protein li 88.3 0.42 1.5E-05 29.7 3.2 40 21-64 7-47 (48)
12 1fre_A Nuclear factor XNF7; zi 84.4 0.41 1.4E-05 28.8 1.5 30 21-51 4-34 (42)
13 2egm_A Tripartite motif-contai 76.2 0.82 2.8E-05 29.7 0.9 33 18-51 16-49 (57)
14 1z60_A TFIIH basal transcripti 63.2 1.6 5.6E-05 29.6 0.2 32 22-53 17-51 (59)
15 2fc7_A ZZZ3 protein; structure 60.0 18 0.00061 25.4 5.2 43 22-64 23-74 (82)
16 2lri_C Autoimmune regulator; Z 42.4 13 0.00044 25.1 2.0 29 17-53 9-37 (66)
17 2dip_A Zinc finger SWIM domain 40.8 15 0.0005 26.8 2.2 29 21-49 32-64 (98)
18 2yt5_A Metal-response element- 34.5 20 0.00067 23.3 1.9 33 18-53 4-36 (66)
19 1v5n_A PDI-like hypothetical p 30.5 24 0.00081 24.9 1.8 28 20-53 47-74 (89)
20 2e5r_A Dystrobrevin alpha; ZZ 30.3 48 0.0016 22.0 3.3 29 22-50 13-45 (63)
21 1faq_A RAF-1; transferase, ser 29.5 24 0.00083 21.7 1.6 28 19-53 13-40 (52)
22 2yqq_A Zinc finger HIT domain- 27.6 27 0.00091 23.4 1.6 23 21-44 13-35 (56)
23 2e6s_A E3 ubiquitin-protein li 27.4 23 0.00077 24.5 1.3 33 20-53 10-54 (77)
24 1f62_A Transcription factor WS 27.4 25 0.00085 21.7 1.4 27 22-53 2-28 (51)
25 1mm2_A MI2-beta; PHD, zinc fin 27.3 38 0.0013 22.0 2.3 28 19-54 8-35 (61)
26 1tot_A CREB-binding protein; z 23.9 21 0.00073 23.0 0.5 28 22-49 8-37 (52)
27 2ku3_A Bromodomain-containing 22.9 44 0.0015 22.6 2.0 34 17-53 13-46 (71)
28 2em0_A Zinc finger protein 224 21.8 56 0.0019 18.1 2.1 20 7-28 1-20 (46)
29 1xwh_A Autoimmune regulator; P 21.5 47 0.0016 21.8 1.9 27 19-53 7-33 (66)
30 2yql_A PHD finger protein 21A; 21.1 42 0.0014 21.3 1.6 27 19-53 8-34 (56)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.13 E-value=0.0016 Score=46.12 Aligned_cols=42 Identities=24% Similarity=0.387 Sum_probs=35.6
Q ss_pred CCCcccccC---CCceEEecCCCcccccccccCCcCCCC--CCCceE
Q 030577 20 VPRCDICEN---APAFFYCEIDGSSLCLQCDMTVHVGGK--RTHGRY 61 (175)
Q Consensus 20 ~plCD~C~~---aPA~vyC~aD~A~LC~~CD~~vHsaN~--~rH~Rv 61 (175)
...|++|.. .+|+.+|..+.++||..|...+|..++ .+|..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence 347999984 689999999999999999999898665 578765
No 2
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=94.17 E-value=0.047 Score=37.53 Aligned_cols=60 Identities=23% Similarity=0.269 Sum_probs=43.7
Q ss_pred cCceecccCC--CCCCCCcccccCCCceEEecCCCccccccccc-CCcCCCCCCCceEecccccccC
Q 030577 7 SRHVRVGLAN--PSDVPRCDICENAPAFFYCEIDGSSLCLQCDM-TVHVGGKRTHGRYLLLRQRVEF 70 (175)
Q Consensus 7 sRH~Rv~L~~--~~~~plCD~C~~aPA~vyC~aD~A~LC~~CD~-~vHsaN~~rH~RvpL~~~~~~~ 70 (175)
.+|.-+.... ......|..-...+-.+||..|...+|..|-. .-| +.|.-++|.++....
T Consensus 3 ~~H~l~~p~~~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H----~~H~~~~l~ea~~~~ 65 (84)
T 2dja_A 3 SGSSGVEPVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH----RDHQVASLNDRFEKL 65 (84)
T ss_dssp CCCCCCCCCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT----TTCCBCCCCSSCCCC
T ss_pred CCCcccCCCCCCCCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC----CCCCccCHHHHHHHH
Confidence 4566664322 23456788886677899999999999999976 555 468888888776543
No 3
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.82 E-value=0.056 Score=37.97 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=41.0
Q ss_pred cccccCceecccCC--CCCCCCcccccCCCceEEecCCCccccccccc-CCcCCCCCCCceEecc
Q 030577 3 NKLASRHVRVGLAN--PSDVPRCDICENAPAFFYCEIDGSSLCLQCDM-TVHVGGKRTHGRYLLL 64 (175)
Q Consensus 3 NkLasRH~Rv~L~~--~~~~plCD~C~~aPA~vyC~aD~A~LC~~CD~-~vHsaN~~rH~RvpL~ 64 (175)
++...+|..+.... ......|+.....+-.+||..|...+|..|.. .-|. .|.-++|.
T Consensus 40 ~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC~~C~~~~~H~----~H~~~~l~ 100 (101)
T 2jun_A 40 KKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRHR----DHQVAALS 100 (101)
T ss_dssp CSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHHTTTS----SSCBCCCC
T ss_pred CCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccchhcCCCCCcC----CCCeecCC
Confidence 34456787763211 12456899997778999999999999999986 6673 46655554
No 4
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=92.56 E-value=0.12 Score=32.89 Aligned_cols=43 Identities=23% Similarity=0.458 Sum_probs=35.3
Q ss_pred CCCcccccCCCceEEecCCCccccccccc-CCcCCCCCCCceEeccccc
Q 030577 20 VPRCDICENAPAFFYCEIDGSSLCLQCDM-TVHVGGKRTHGRYLLLRQR 67 (175)
Q Consensus 20 ~plCD~C~~aPA~vyC~aD~A~LC~~CD~-~vHsaN~~rH~RvpL~~~~ 67 (175)
..+|..-. .+-.+||..|...+|..|-. .-| +.|.-++|.++.
T Consensus 8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H----~~H~~~~l~ea~ 51 (53)
T 2did_A 8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTH----RAHTVVPLSGPS 51 (53)
T ss_dssp CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTT----TTSCEEECCCTT
T ss_pred CCcChhhC-CeeeEEeCCCCeEEeccccCCCCC----CCCcEeeHHHHh
Confidence 34688887 67899999999999999976 555 578899988764
No 5
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=91.62 E-value=0.17 Score=35.76 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=45.7
Q ss_pred CCCCCcccccCCCceEEecCC-CcccccccccCCcCCCC-CCCceEecccccccCCCCcc
Q 030577 18 SDVPRCDICENAPAFFYCEID-GSSLCLQCDMTVHVGGK-RTHGRYLLLRQRVEFPGDKA 75 (175)
Q Consensus 18 ~~~plCD~C~~aPA~vyC~aD-~A~LC~~CD~~vHsaN~-~rH~RvpL~~~~~~~p~~~p 75 (175)
.+.+.|-+|... |++.|... .-..|..|=+..|..-. +.|+-+++......-..+.|
T Consensus 6 ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~~~d~r~Hk~v~y~~~~k~~~~~~~ 64 (67)
T 2d8v_A 6 SGLPWCCICNED-ATLRCAGCDGDLYCARCFREGHDNFDLKEHQTSPYHPRRPCQEHSGP 64 (67)
T ss_dssp CCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTTTSSTTTCCEECCCCSSSSCCCCCC
T ss_pred cCCCeeEEeCCC-CeEEecCCCCceehHHHHHHHccchhhhccceeeccCCCCCcccCCC
Confidence 567899999987 99999877 66999999999997544 89999998766555554544
No 6
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=90.97 E-value=0.15 Score=33.16 Aligned_cols=47 Identities=19% Similarity=0.296 Sum_probs=37.7
Q ss_pred CCCcccccCCCceEEecCCCccccccccc-CCcCCCCCCCceEecccccccC
Q 030577 20 VPRCDICENAPAFFYCEIDGSSLCLQCDM-TVHVGGKRTHGRYLLLRQRVEF 70 (175)
Q Consensus 20 ~plCD~C~~aPA~vyC~aD~A~LC~~CD~-~vHsaN~~rH~RvpL~~~~~~~ 70 (175)
...|..-...+-.+||..|...+|..|-. .-| +.|.-+||.++....
T Consensus 8 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H----~~H~~~~l~~a~~~~ 55 (64)
T 2d8u_A 8 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH----KACEVAPLQSVFQGQ 55 (64)
T ss_dssp CCCCSSCTTCCCCSEESSSCCCCCSHHHHSSST----TSSCEECTTTCCSSC
T ss_pred CCcCcCcCCCccceEcCcCCceeCccccCCCcC----CCCCeeCHHHHHHHH
Confidence 34788886677899999999999999964 466 468999998876653
No 7
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=90.88 E-value=0.21 Score=31.18 Aligned_cols=44 Identities=20% Similarity=0.554 Sum_probs=34.4
Q ss_pred CCCcccccCCCceEEecCCCcccccccccCCcCCCCCCCceEeccccc
Q 030577 20 VPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQR 67 (175)
Q Consensus 20 ~plCD~C~~aPA~vyC~aD~A~LC~~CD~~vHsaN~~rH~RvpL~~~~ 67 (175)
...|..-...+-.+||..|...+|..|-..-| +.|.-++|.++.
T Consensus 6 ~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H----~~H~~~~l~ea~ 49 (50)
T 2yvr_A 6 TVYCNVHKHEPLVLFCESCDTLTCRDCQLNAH----KDHQYQFLEDAV 49 (50)
T ss_dssp SCBCSSSTTCBCCEEETTTTEEECHHHHHTTT----TTCCEEETTC--
T ss_pred CCcCcCCCCCCEEEEeCCCCEEEecccCCCcC----CCCceecHHHHh
Confidence 34688886667899999999999999977555 478888887753
No 8
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.76 E-value=0.23 Score=32.61 Aligned_cols=42 Identities=21% Similarity=0.551 Sum_probs=34.4
Q ss_pred CCcccccCCCceEEecCCCccccccccc-CCcCCCCCCCceEeccccc
Q 030577 21 PRCDICENAPAFFYCEIDGSSLCLQCDM-TVHVGGKRTHGRYLLLRQR 67 (175)
Q Consensus 21 plCD~C~~aPA~vyC~aD~A~LC~~CD~-~vHsaN~~rH~RvpL~~~~ 67 (175)
.+|.... .+-.+||..|...+|..|-. .-| +.|.-++|.++.
T Consensus 15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH----~~H~~~~l~ea~ 57 (59)
T 2yrg_A 15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEH----RGHHTFPTSGPS 57 (59)
T ss_dssp SBCTTTC-CBCCEEETTTCSEECHHHHTSTTT----TTCCEEECCSSC
T ss_pred ccChhhC-ceeeeecCCCCcEEecccCCCCcC----CCCcEeeHHHHh
Confidence 5788876 57889999999999999976 455 578889988765
No 9
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=89.88 E-value=0.23 Score=33.31 Aligned_cols=46 Identities=17% Similarity=0.551 Sum_probs=37.0
Q ss_pred CCCCcccccCCCceEEecCCCcccccccccCCcCCCCCCCceEeccccccc
Q 030577 19 DVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVE 69 (175)
Q Consensus 19 ~~plCD~C~~aPA~vyC~aD~A~LC~~CD~~vHsaN~~rH~RvpL~~~~~~ 69 (175)
....|..-. .+-.+||..|...+|..|-..-| +.|.-++|.++...
T Consensus 17 ~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H----~~H~~~~l~ea~~~ 62 (72)
T 2csv_A 17 EARKCPVHG-KTMELFCQTDQTCICYLCMFQEH----KNHSTVTVEEAKAE 62 (72)
T ss_dssp SCCBCTTTC-CBCCEEESSSCCEECHHHHHTTT----SSSCEEEHHHHHHH
T ss_pred ccCcCcccC-CceEEEeCCCCeEEccccCCCCC----CCCCEecHHHHHHH
Confidence 456888885 78899999999999999976555 57889998876553
No 10
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=89.44 E-value=0.15 Score=35.48 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=33.2
Q ss_pred CCCCcccccC---CCceEEecCCCcccccccccCCcCCCC--CCCc
Q 030577 19 DVPRCDICEN---APAFFYCEIDGSSLCLQCDMTVHVGGK--RTHG 59 (175)
Q Consensus 19 ~~plCD~C~~---aPA~vyC~aD~A~LC~~CD~~vHsaN~--~rH~ 59 (175)
....||+|.. .+|+-+|....++||..|=...|.... .+|.
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~ 74 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHR 74 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCC
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCc
Confidence 3568999986 679999999999999999887676644 4664
No 11
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=88.26 E-value=0.42 Score=29.66 Aligned_cols=40 Identities=23% Similarity=0.445 Sum_probs=30.5
Q ss_pred CCcccccCCCceEEecCCCcccccccc-cCCcCCCCCCCceEecc
Q 030577 21 PRCDICENAPAFFYCEIDGSSLCLQCD-MTVHVGGKRTHGRYLLL 64 (175)
Q Consensus 21 plCD~C~~aPA~vyC~aD~A~LC~~CD-~~vHsaN~~rH~RvpL~ 64 (175)
.+|..-...+-.+||..|...+|..|- ..-| +.|.-+||.
T Consensus 7 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H----~~H~~~~l~ 47 (48)
T 3ddt_A 7 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH----KACEVAPLQ 47 (48)
T ss_dssp CBCSSSTTSBCCEEETTTTEEECHHHHHHSTT----TTSCEEECC
T ss_pred CcCCCCCCccccEEcCCCCeeEcccccCCCcC----CCCcEEeCC
Confidence 457766656688999999999999996 4456 457777764
No 12
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=84.42 E-value=0.41 Score=28.76 Aligned_cols=30 Identities=27% Similarity=0.638 Sum_probs=24.4
Q ss_pred CCcccccCCCceEEecCCCccccccccc-CCc
Q 030577 21 PRCDICENAPAFFYCEIDGSSLCLQCDM-TVH 51 (175)
Q Consensus 21 plCD~C~~aPA~vyC~aD~A~LC~~CD~-~vH 51 (175)
.+|..-. .+-.+||..|...+|..|-. .-|
T Consensus 4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H 34 (42)
T 1fre_A 4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKH 34 (42)
T ss_dssp CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSC
T ss_pred ccchhhC-CeeeEEeCCCCeEEeccCCCCCCC
Confidence 3577776 57889999999999999976 455
No 13
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.21 E-value=0.82 Score=29.74 Aligned_cols=33 Identities=24% Similarity=0.654 Sum_probs=26.5
Q ss_pred CCCCCcccccCCCceEEecCCCccccccccc-CCc
Q 030577 18 SDVPRCDICENAPAFFYCEIDGSSLCLQCDM-TVH 51 (175)
Q Consensus 18 ~~~plCD~C~~aPA~vyC~aD~A~LC~~CD~-~vH 51 (175)
....+|.... .+-.+||..|.+.+|..|.. .-|
T Consensus 16 ~~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH 49 (57)
T 2egm_A 16 TDQGICPKHQ-EALKLFCEVDEEAICVVCRESRSH 49 (57)
T ss_dssp CTTSBCTTTC-CBCCEEETTTTEEECHHHHHSHHH
T ss_pred cccCcChhhC-ceeeEEcCCCCcEEecccCCCCCC
Confidence 3445798885 67899999999999999975 344
No 14
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=63.23 E-value=1.6 Score=29.59 Aligned_cols=32 Identities=25% Similarity=0.677 Sum_probs=26.4
Q ss_pred CcccccCCCc---eEEecCCCcccccccccCCcCC
Q 030577 22 RCDICENAPA---FFYCEIDGSSLCLQCDMTVHVG 53 (175)
Q Consensus 22 lCD~C~~aPA---~vyC~aD~A~LC~~CD~~vHsa 53 (175)
.|-.|...-. ++.|......+|.+||.-+|..
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 4888887542 4669999999999999999975
No 15
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=60.05 E-value=18 Score=25.44 Aligned_cols=43 Identities=21% Similarity=0.446 Sum_probs=29.3
Q ss_pred CcccccCCC---ceEEecCCCc----ccccccccCCcCCCC--CCCceEecc
Q 030577 22 RCDICENAP---AFFYCEIDGS----SLCLQCDMTVHVGGK--RTHGRYLLL 64 (175)
Q Consensus 22 lCD~C~~aP---A~vyC~aD~A----~LC~~CD~~vHsaN~--~rH~RvpL~ 64 (175)
.||.|...| -.+.|....- -||..|-...+.... ..|.=..+.
T Consensus 23 ~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~ 74 (82)
T 2fc7_A 23 KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIY 74 (82)
T ss_dssp CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEEC
T ss_pred CCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEee
Confidence 599999876 5588987764 599999776543322 356555544
No 16
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=42.39 E-value=13 Score=25.08 Aligned_cols=29 Identities=21% Similarity=0.549 Sum_probs=21.6
Q ss_pred CCCCCCcccccCCCceEEecCCCcccccccccCCcCC
Q 030577 17 PSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVG 53 (175)
Q Consensus 17 ~~~~plCD~C~~aPA~vyC~aD~A~LC~~CD~~vHsa 53 (175)
+.....|.+|+.. +...+|..|+...|..
T Consensus 9 ~~~~~~C~vC~~~--------~~ll~Cd~C~~~~H~~ 37 (66)
T 2lri_C 9 LAPGARCGVCGDG--------TDVLRCTHCAAAFHWR 37 (66)
T ss_dssp CCTTCCCTTTSCC--------TTCEECSSSCCEECHH
T ss_pred CCCCCCcCCCCCC--------CeEEECCCCCCceecc
Confidence 3455679999853 4578888999888864
No 17
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=40.77 E-value=15 Score=26.82 Aligned_cols=29 Identities=24% Similarity=0.551 Sum_probs=21.9
Q ss_pred CCcccccCCC---ceEEecCCC-cccccccccC
Q 030577 21 PRCDICENAP---AFFYCEIDG-SSLCLQCDMT 49 (175)
Q Consensus 21 plCD~C~~aP---A~vyC~aD~-A~LC~~CD~~ 49 (175)
..||.|...| ..+.|..+. --||..|-..
T Consensus 32 v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~ 64 (98)
T 2dip_A 32 IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDS 64 (98)
T ss_dssp CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHT
T ss_pred CCCcCCCCCCcccCeEECCCCCCccHHHHHHcc
Confidence 4799999865 568897775 4699999443
No 18
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=34.49 E-value=20 Score=23.26 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=23.2
Q ss_pred CCCCCcccccCCCceEEecCCCcccccccccCCcCC
Q 030577 18 SDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVG 53 (175)
Q Consensus 18 ~~~plCD~C~~aPA~vyC~aD~A~LC~~CD~~vHsa 53 (175)
.....|.+|...-.. ..+...+|..|+...|..
T Consensus 4 ~~~~~C~vC~~~~~~---~~~~ll~Cd~C~~~~H~~ 36 (66)
T 2yt5_A 4 GSSGVCTICQEEYSE---APNEMVICDKCGQGYHQL 36 (66)
T ss_dssp CCCCCBSSSCCCCCB---TTBCEEECSSSCCEEETT
T ss_pred CCCCCCCCCCCCCCC---CCCCEEECCCCChHHHhh
Confidence 455679999864111 235678899999999875
No 19
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=30.50 E-value=24 Score=24.91 Aligned_cols=28 Identities=36% Similarity=0.624 Sum_probs=20.2
Q ss_pred CCCcccccCCCceEEecCCCcccccccccCCcCC
Q 030577 20 VPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVG 53 (175)
Q Consensus 20 ~plCD~C~~aPA~vyC~aD~A~LC~~CD~~vHsa 53 (175)
...|+.|+... ..-.+-|..||..+|..
T Consensus 47 ~~~C~~C~~~~------~~~~Y~C~~C~f~lH~~ 74 (89)
T 1v5n_A 47 VYTCDKCEEEG------TIWSYHCDECDFDLHAK 74 (89)
T ss_dssp SCCCTTTSCCC------CSCEEECTTTCCCCCHH
T ss_pred CeEeCCCCCcC------CCcEEEcCCCCCeEcHH
Confidence 45799999763 23457788999888853
No 20
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.29 E-value=48 Score=22.00 Aligned_cols=29 Identities=21% Similarity=0.550 Sum_probs=22.7
Q ss_pred CcccccCCC---ceEEecCCCc-ccccccccCC
Q 030577 22 RCDICENAP---AFFYCEIDGS-SLCLQCDMTV 50 (175)
Q Consensus 22 lCD~C~~aP---A~vyC~aD~A-~LC~~CD~~v 50 (175)
.||.|...| -.+.|....- -||..|-..-
T Consensus 13 ~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 13 ECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp CCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred CCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 699999876 6688987754 5999996654
No 21
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=29.49 E-value=24 Score=21.68 Aligned_cols=28 Identities=29% Similarity=0.745 Sum_probs=22.6
Q ss_pred CCCCcccccCCCceEEecCCCcccccccccCCcCC
Q 030577 19 DVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVG 53 (175)
Q Consensus 19 ~~plCD~C~~aPA~vyC~aD~A~LC~~CD~~vHsa 53 (175)
....|+.|+. .+| ..+.|..|...+|..
T Consensus 13 ~pt~C~~C~~---~l~----qG~~C~~C~~~~H~~ 40 (52)
T 1faq_A 13 KLAFCDICQK---FLL----NGFRCQTCGYKFHEH 40 (52)
T ss_dssp SCEECTTSSS---EEC----SEEECTTTTCCBCST
T ss_pred CCcCCCCccc---ccc----cCCEeCCCCCeEChh
Confidence 3467999986 466 689999999999964
No 22
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.58 E-value=27 Score=23.36 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.4
Q ss_pred CCcccccCCCceEEecCCCccccc
Q 030577 21 PRCDICENAPAFFYCEIDGSSLCL 44 (175)
Q Consensus 21 plCD~C~~aPA~vyC~aD~A~LC~ 44 (175)
.+|.+|+. ++...|....+..|.
T Consensus 13 ~~C~vC~~-~~kY~CPrC~~~yCS 35 (56)
T 2yqq_A 13 VVCVICLE-KPKYRCPACRVPYCS 35 (56)
T ss_dssp CCCTTTCS-CCSEECTTTCCEESS
T ss_pred CccCcCcC-CCeeeCCCCCCCeeC
Confidence 37999999 999999999988885
No 23
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.44 E-value=23 Score=24.52 Aligned_cols=33 Identities=27% Similarity=0.656 Sum_probs=20.1
Q ss_pred CCCcccccCCCceEEec------------CCCcccccccccCCcCC
Q 030577 20 VPRCDICENAPAFFYCE------------IDGSSLCLQCDMTVHVG 53 (175)
Q Consensus 20 ~plCD~C~~aPA~vyC~------------aD~A~LC~~CD~~vHsa 53 (175)
.+.|..|...+ .++|. .+...+|..|+...|..
T Consensus 10 ~~~c~~C~~~~-~w~C~~c~C~vC~~~~~~~~ll~CD~C~~~yH~~ 54 (77)
T 2e6s_A 10 DTECDLCGGDP-EKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIY 54 (77)
T ss_dssp CCCCTTTCSCS-SSCCSSSSCSSSCCCCCSTTEEECSSSCCEEETT
T ss_pred CccChhhcCCC-CeECCCCCCcCcCCcCCCCCEEEcCCCCcccccc
Confidence 34677776553 45553 34566777777777754
No 24
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=27.38 E-value=25 Score=21.71 Aligned_cols=27 Identities=33% Similarity=0.726 Sum_probs=19.3
Q ss_pred CcccccCCCceEEecCCCcccccccccCCcCC
Q 030577 22 RCDICENAPAFFYCEIDGSSLCLQCDMTVHVG 53 (175)
Q Consensus 22 lCD~C~~aPA~vyC~aD~A~LC~~CD~~vHsa 53 (175)
.|.+|+..- ..+...+|..|+...|..
T Consensus 2 ~C~vC~~~~-----~~~~ll~Cd~C~~~~H~~ 28 (51)
T 1f62_A 2 RCKVCRKKG-----EDDKLILCDECNKAFHLF 28 (51)
T ss_dssp CCTTTCCSS-----CCSCCEECTTTCCEECHH
T ss_pred CCCCCCCCC-----CCCCEEECCCCChhhCcc
Confidence 488888652 245678899999887754
No 25
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=27.31 E-value=38 Score=22.02 Aligned_cols=28 Identities=18% Similarity=0.472 Sum_probs=21.7
Q ss_pred CCCCcccccCCCceEEecCCCcccccccccCCcCCC
Q 030577 19 DVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGG 54 (175)
Q Consensus 19 ~~plCD~C~~aPA~vyC~aD~A~LC~~CD~~vHsaN 54 (175)
....|.+|.. .+...+|..|+...|..=
T Consensus 8 ~~~~C~vC~~--------~g~ll~Cd~C~~~fH~~C 35 (61)
T 1mm2_A 8 HMEFCRVCKD--------GGELLCCDTCPSSYHIHC 35 (61)
T ss_dssp SCSSCTTTCC--------CSSCBCCSSSCCCBCSSS
T ss_pred CCCcCCCCCC--------CCCEEEcCCCCHHHcccc
Confidence 4557999985 357899999999988763
No 26
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=23.85 E-value=21 Score=23.02 Aligned_cols=28 Identities=25% Similarity=0.691 Sum_probs=21.5
Q ss_pred CcccccCCC-ceEEecCCCcc-cccccccC
Q 030577 22 RCDICENAP-AFFYCEIDGSS-LCLQCDMT 49 (175)
Q Consensus 22 lCD~C~~aP-A~vyC~aD~A~-LC~~CD~~ 49 (175)
.||.|.... ..+.|....-+ ||..|=..
T Consensus 8 ~Cd~C~~~ig~R~~C~~C~dyDLC~~C~~~ 37 (52)
T 1tot_A 8 TCNECKHHVETRWHCTVCEDYDLCINCYNT 37 (52)
T ss_dssp EETTTTEEESSEEEESSSSSCEECHHHHHH
T ss_pred ECCCCCCCCcceEEcCCCCCchhHHHHHhC
Confidence 699999752 56889888765 99999543
No 27
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=22.94 E-value=44 Score=22.65 Aligned_cols=34 Identities=21% Similarity=0.483 Sum_probs=23.1
Q ss_pred CCCCCCcccccCCCceEEecCCCcccccccccCCcCC
Q 030577 17 PSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVG 53 (175)
Q Consensus 17 ~~~~plCD~C~~aPA~vyC~aD~A~LC~~CD~~vHsa 53 (175)
......|.+|...-. =..+...+|..||...|..
T Consensus 13 ~~~~~~C~vC~~~~s---~~~~~ll~CD~C~~~~H~~ 46 (71)
T 2ku3_A 13 IDEDAVCSICMDGES---QNSNVILFCDMCNLAVHQE 46 (71)
T ss_dssp CCSSCSCSSSCCCCC---CSSSCEEECSSSCCEEEHH
T ss_pred CCCCCCCCCCCCCCC---CCCCCEEECCCCCCccccc
Confidence 356678999986421 0235677888999888864
No 28
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=21.79 E-value=56 Score=18.05 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=9.5
Q ss_pred cCceecccCCCCCCCCcccccC
Q 030577 7 SRHVRVGLANPSDVPRCDICEN 28 (175)
Q Consensus 7 sRH~Rv~L~~~~~~plCD~C~~ 28 (175)
++|+|+.. ......|+.|+.
T Consensus 1 ~~H~~~H~--~~k~~~C~~C~k 20 (46)
T 2em0_A 1 GSSGSSGM--GEKTWKCRECDM 20 (46)
T ss_dssp CCCCCCSC--CCCCCCCSSSCC
T ss_pred CCCcCccC--CCcCeECCCCCc
Confidence 46777642 122234555543
No 29
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=21.48 E-value=47 Score=21.79 Aligned_cols=27 Identities=19% Similarity=0.586 Sum_probs=20.9
Q ss_pred CCCCcccccCCCceEEecCCCcccccccccCCcCC
Q 030577 19 DVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVG 53 (175)
Q Consensus 19 ~~plCD~C~~aPA~vyC~aD~A~LC~~CD~~vHsa 53 (175)
....|.+|... ....+|..|+...|..
T Consensus 7 ~~~~C~vC~~~--------g~ll~CD~C~~~fH~~ 33 (66)
T 1xwh_A 7 NEDECAVCRDG--------GELICCDGCPRAFHLA 33 (66)
T ss_dssp CCCSBSSSSCC--------SSCEECSSCCCEECTT
T ss_pred CCCCCccCCCC--------CCEEEcCCCChhhccc
Confidence 44579999964 4678889999988865
No 30
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.14 E-value=42 Score=21.27 Aligned_cols=27 Identities=19% Similarity=0.566 Sum_probs=21.1
Q ss_pred CCCCcccccCCCceEEecCCCcccccccccCCcCC
Q 030577 19 DVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVG 53 (175)
Q Consensus 19 ~~plCD~C~~aPA~vyC~aD~A~LC~~CD~~vHsa 53 (175)
....|.+|... +...+|..|+...|..
T Consensus 8 ~~~~C~vC~~~--------g~ll~Cd~C~~~~H~~ 34 (56)
T 2yql_A 8 HEDFCSVCRKS--------GQLLMCDTCSRVYHLD 34 (56)
T ss_dssp SCCSCSSSCCS--------SCCEECSSSSCEECSS
T ss_pred CCCCCccCCCC--------CeEEEcCCCCcceECc
Confidence 45579999974 4678899999888865
Done!