Query 030579
Match_columns 175
No_of_seqs 176 out of 1555
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 15:52:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030579.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030579hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02921 naphthoate synthase 100.0 1.8E-34 3.9E-39 242.5 16.6 171 5-175 1-171 (327)
2 COG0447 MenB Dihydroxynaphthoi 99.9 3.5E-24 7.5E-29 168.0 8.6 109 66-175 15-126 (282)
3 PRK07396 dihydroxynaphthoic ac 99.9 1.3E-23 2.9E-28 172.7 12.5 108 66-175 10-117 (273)
4 PRK06143 enoyl-CoA hydratase; 99.9 1.2E-23 2.6E-28 171.5 11.7 106 68-175 5-110 (256)
5 PRK05809 3-hydroxybutyryl-CoA 99.9 1.6E-23 3.4E-28 170.9 12.3 107 66-175 1-107 (260)
6 PRK06144 enoyl-CoA hydratase; 99.9 1.7E-23 3.7E-28 171.0 12.5 107 67-175 6-112 (262)
7 TIGR03210 badI 2-ketocyclohexa 99.9 1.7E-23 3.7E-28 170.5 11.7 104 68-175 1-104 (256)
8 PRK05674 gamma-carboxygeranoyl 99.9 2.1E-23 4.5E-28 170.9 12.0 108 66-175 2-111 (265)
9 PRK05995 enoyl-CoA hydratase; 99.9 2.3E-23 5E-28 170.1 12.0 106 67-175 2-109 (262)
10 COG1024 CaiD Enoyl-CoA hydrata 99.9 2.4E-23 5.2E-28 169.6 11.9 106 67-175 3-108 (257)
11 PRK06142 enoyl-CoA hydratase; 99.9 2.9E-23 6.4E-28 170.4 12.2 107 66-175 3-119 (272)
12 TIGR01929 menB naphthoate synt 99.9 3.4E-23 7.3E-28 169.1 12.1 106 69-175 2-107 (259)
13 PRK09120 p-hydroxycinnamoyl Co 99.9 3.6E-23 7.7E-28 170.3 12.0 107 66-175 5-114 (275)
14 PRK05870 enoyl-CoA hydratase; 99.9 4.7E-23 1E-27 167.3 12.1 102 70-175 4-105 (249)
15 PRK08139 enoyl-CoA hydratase; 99.9 4.4E-23 9.4E-28 169.0 12.0 107 66-175 8-114 (266)
16 PRK05981 enoyl-CoA hydratase; 99.9 5.8E-23 1.3E-27 168.1 12.5 107 66-175 1-113 (266)
17 PRK05980 enoyl-CoA hydratase; 99.9 4.2E-23 9.2E-28 168.4 11.5 104 70-175 4-110 (260)
18 PRK12478 enoyl-CoA hydratase; 99.9 5.6E-23 1.2E-27 171.0 12.4 107 66-175 2-122 (298)
19 PRK07468 enoyl-CoA hydratase; 99.9 5.6E-23 1.2E-27 168.0 12.2 106 68-175 3-110 (262)
20 PRK05862 enoyl-CoA hydratase; 99.9 5.8E-23 1.3E-27 167.4 12.2 102 68-175 3-104 (257)
21 PRK06190 enoyl-CoA hydratase; 99.9 5.3E-23 1.2E-27 167.9 11.9 103 67-175 2-104 (258)
22 PRK07657 enoyl-CoA hydratase; 99.9 6.1E-23 1.3E-27 167.5 12.1 104 70-175 4-107 (260)
23 PRK08140 enoyl-CoA hydratase; 99.9 6.7E-23 1.4E-27 167.4 12.4 105 67-175 2-109 (262)
24 PRK07327 enoyl-CoA hydratase; 99.9 8.8E-23 1.9E-27 167.4 12.4 107 67-175 9-116 (268)
25 PRK05864 enoyl-CoA hydratase; 99.9 1.1E-22 2.4E-27 167.4 12.9 109 65-175 5-119 (276)
26 PRK08290 enoyl-CoA hydratase; 99.9 1.1E-22 2.4E-27 168.5 12.9 107 66-175 1-128 (288)
27 PRK06495 enoyl-CoA hydratase; 99.9 9.9E-23 2.1E-27 166.1 12.3 105 67-175 2-107 (257)
28 PLN02851 3-hydroxyisobutyryl-C 99.9 1E-22 2.2E-27 175.3 12.8 103 69-175 42-148 (407)
29 PRK08272 enoyl-CoA hydratase; 99.9 9.3E-23 2E-27 169.9 12.1 108 65-175 6-137 (302)
30 PRK06563 enoyl-CoA hydratase; 99.9 7.5E-23 1.6E-27 166.6 11.2 102 71-175 1-102 (255)
31 PRK06127 enoyl-CoA hydratase; 99.9 9E-23 1.9E-27 167.4 11.7 105 69-175 11-116 (269)
32 PRK09674 enoyl-CoA hydratase-i 99.9 9.2E-23 2E-27 166.1 11.7 100 70-175 3-102 (255)
33 PRK06210 enoyl-CoA hydratase; 99.9 1.2E-22 2.6E-27 166.7 12.4 107 66-175 2-118 (272)
34 PRK09076 enoyl-CoA hydratase; 99.9 1E-22 2.2E-27 166.1 11.7 102 70-175 4-105 (258)
35 PRK07260 enoyl-CoA hydratase; 99.9 1.1E-22 2.4E-27 165.5 11.7 104 69-175 2-108 (255)
36 PRK07659 enoyl-CoA hydratase; 99.9 1.6E-22 3.4E-27 165.1 12.4 106 66-175 3-108 (260)
37 PRK07799 enoyl-CoA hydratase; 99.9 1.3E-22 2.7E-27 165.9 11.7 105 67-175 3-110 (263)
38 PRK07658 enoyl-CoA hydratase; 99.9 1.6E-22 3.4E-27 164.7 12.0 102 70-175 3-104 (257)
39 PRK07827 enoyl-CoA hydratase; 99.9 1.9E-22 4.2E-27 164.6 12.6 106 67-175 4-111 (260)
40 PLN02664 enoyl-CoA hydratase/d 99.9 1.9E-22 4.1E-27 165.9 12.5 97 78-175 15-121 (275)
41 PLN02600 enoyl-CoA hydratase 99.9 1E-22 2.2E-27 165.5 10.8 97 78-175 2-98 (251)
42 PRK06072 enoyl-CoA hydratase; 99.9 1.4E-22 3.1E-27 164.4 11.5 98 71-175 2-99 (248)
43 PRK08260 enoyl-CoA hydratase; 99.9 2E-22 4.3E-27 167.4 12.4 106 67-175 2-123 (296)
44 PRK08258 enoyl-CoA hydratase; 99.9 2.7E-22 5.7E-27 165.2 12.6 106 67-175 15-123 (277)
45 PRK07509 enoyl-CoA hydratase; 99.9 2.2E-22 4.7E-27 164.3 11.9 104 69-175 3-112 (262)
46 KOG1680 Enoyl-CoA hydratase [L 99.9 6.2E-23 1.3E-27 165.9 8.5 94 78-175 44-137 (290)
47 PRK08138 enoyl-CoA hydratase; 99.9 2.9E-22 6.3E-27 163.7 12.5 103 68-175 6-108 (261)
48 PRK11423 methylmalonyl-CoA dec 99.9 2.4E-22 5.2E-27 164.3 11.9 105 66-175 1-106 (261)
49 PRK06023 enoyl-CoA hydratase; 99.9 2.4E-22 5.1E-27 163.4 11.5 101 70-175 4-107 (251)
50 PRK06688 enoyl-CoA hydratase; 99.9 3.2E-22 7E-27 163.0 12.3 102 69-175 5-106 (259)
51 PRK06494 enoyl-CoA hydratase; 99.9 2.4E-22 5.2E-27 164.0 11.5 103 67-175 2-104 (259)
52 PRK09245 enoyl-CoA hydratase; 99.9 2.7E-22 5.7E-27 164.2 11.6 103 70-175 4-113 (266)
53 PRK08150 enoyl-CoA hydratase; 99.9 2.5E-22 5.5E-27 163.6 11.4 100 70-175 3-102 (255)
54 PRK05869 enoyl-CoA hydratase; 99.9 2E-22 4.3E-27 161.2 10.5 95 78-175 15-109 (222)
55 PRK08321 naphthoate synthase; 99.9 4.7E-22 1E-26 165.7 13.2 120 53-175 10-145 (302)
56 TIGR02280 PaaB1 phenylacetate 99.9 2.7E-22 5.9E-27 163.4 11.4 101 71-175 1-103 (256)
57 PRK07511 enoyl-CoA hydratase; 99.9 3.9E-22 8.5E-27 162.7 11.7 103 70-175 4-108 (260)
58 PLN02157 3-hydroxyisobutyryl-C 99.9 3.6E-22 7.8E-27 171.8 11.7 103 69-175 37-143 (401)
59 PRK07938 enoyl-CoA hydratase; 99.9 3.9E-22 8.4E-27 162.0 11.0 96 78-175 9-104 (249)
60 PRK07110 polyketide biosynthes 99.9 6.6E-22 1.4E-26 160.6 12.1 102 67-175 3-104 (249)
61 PLN02888 enoyl-CoA hydratase 99.9 7.1E-22 1.5E-26 161.8 12.2 103 67-175 7-109 (265)
62 PLN02874 3-hydroxyisobutyryl-C 99.9 5.3E-22 1.1E-26 170.0 11.8 107 66-175 8-115 (379)
63 PRK07112 polyketide biosynthes 99.9 8.3E-22 1.8E-26 160.5 11.9 104 67-175 2-106 (255)
64 PRK05617 3-hydroxyisobutyryl-C 99.9 6.9E-22 1.5E-26 167.3 10.8 103 70-175 4-110 (342)
65 TIGR03189 dienoyl_CoA_hyt cycl 99.9 1.6E-21 3.5E-26 158.6 12.3 97 71-175 3-99 (251)
66 PRK08259 enoyl-CoA hydratase; 99.9 8.9E-22 1.9E-26 160.3 10.7 100 70-175 4-103 (254)
67 PRK03580 carnitinyl-CoA dehydr 99.9 1.6E-21 3.5E-26 159.3 11.4 101 70-175 4-104 (261)
68 PLN02988 3-hydroxyisobutyryl-C 99.9 1.7E-21 3.7E-26 166.8 12.0 104 68-175 8-115 (381)
69 PRK08252 enoyl-CoA hydratase; 99.9 2.2E-21 4.8E-26 157.9 11.1 98 70-175 4-101 (254)
70 PRK07854 enoyl-CoA hydratase; 99.9 3.6E-21 7.7E-26 155.8 12.2 95 71-175 2-96 (243)
71 KOG1681 Enoyl-CoA isomerase [L 99.9 7.5E-22 1.6E-26 155.9 6.2 109 66-175 16-136 (292)
72 PF00378 ECH: Enoyl-CoA hydrat 99.8 1.5E-21 3.2E-26 157.7 7.3 99 73-175 2-100 (245)
73 PLN03214 probable enoyl-CoA hy 99.8 1.4E-20 2.9E-25 155.3 12.5 106 68-175 10-117 (278)
74 PRK08788 enoyl-CoA hydratase; 99.8 2.1E-20 4.5E-25 154.8 12.4 110 65-175 11-131 (287)
75 PLN02267 enoyl-CoA hydratase/i 99.8 1.7E-20 3.7E-25 151.6 11.5 101 71-175 2-104 (239)
76 TIGR03200 dearomat_oah 6-oxocy 99.8 2.2E-20 4.8E-25 157.6 10.7 95 81-175 38-134 (360)
77 PRK06213 enoyl-CoA hydratase; 99.8 5.3E-20 1.2E-24 147.6 11.3 98 70-175 4-101 (229)
78 PRK11730 fadB multifunctional 99.8 5E-20 1.1E-24 168.8 12.3 104 70-175 7-112 (715)
79 cd06558 crotonase-like Crotona 99.8 8.5E-20 1.8E-24 142.0 11.4 101 72-175 2-103 (195)
80 TIGR03222 benzo_boxC benzoyl-C 99.8 1.9E-19 4.1E-24 160.0 12.7 109 65-175 7-129 (546)
81 TIGR03222 benzo_boxC benzoyl-C 99.8 2.7E-19 5.8E-24 159.1 13.0 110 64-175 251-376 (546)
82 PRK11154 fadJ multifunctional 99.8 2.2E-19 4.8E-24 164.4 12.6 104 71-175 7-111 (708)
83 TIGR02437 FadB fatty oxidation 99.8 2.5E-19 5.3E-24 164.2 12.4 104 70-175 7-112 (714)
84 PRK08184 benzoyl-CoA-dihydrodi 99.8 8.2E-19 1.8E-23 156.3 15.3 111 64-175 255-380 (550)
85 TIGR02441 fa_ox_alpha_mit fatt 99.8 3.3E-19 7.1E-24 163.8 12.3 107 66-175 10-118 (737)
86 PRK08184 benzoyl-CoA-dihydrodi 99.8 5.8E-19 1.3E-23 157.2 12.7 109 65-175 11-133 (550)
87 TIGR02440 FadJ fatty oxidation 99.8 6.6E-19 1.4E-23 161.1 12.4 97 78-175 8-106 (699)
88 KOG1684 Enoyl-CoA hydratase [L 99.7 6.4E-18 1.4E-22 140.9 10.4 103 69-174 38-144 (401)
89 KOG0016 Enoyl-CoA hydratase/is 99.7 2.2E-17 4.8E-22 132.5 11.3 108 65-175 3-117 (266)
90 KOG1679 Enoyl-CoA hydratase [L 99.7 1.5E-17 3.2E-22 130.7 8.0 105 70-175 28-134 (291)
91 KOG1682 Enoyl-CoA isomerase [L 99.6 1.3E-15 2.9E-20 118.9 9.2 102 71-175 34-135 (287)
92 cd07019 S49_SppA_1 Signal pept 98.7 7.1E-08 1.5E-12 76.6 7.1 77 81-175 2-80 (211)
93 cd07014 S49_SppA Signal peptid 98.5 5.1E-07 1.1E-11 69.7 6.8 60 98-175 22-81 (177)
94 cd07023 S49_Sppa_N_C Signal pe 98.2 4E-06 8.7E-11 66.3 6.5 61 97-175 16-76 (208)
95 cd07022 S49_Sppa_36K_type Sign 98.2 7E-06 1.5E-10 65.3 7.1 70 87-175 13-83 (214)
96 cd07018 S49_SppA_67K_type Sign 97.6 8.7E-05 1.9E-09 59.3 4.5 62 95-174 26-87 (222)
97 TIGR00706 SppA_dom signal pept 97.6 0.0002 4.4E-09 56.6 6.5 55 100-175 15-71 (207)
98 cd00394 Clp_protease_like Case 97.6 0.00015 3.3E-09 54.7 5.4 60 95-175 8-67 (161)
99 TIGR00705 SppA_67K signal pept 96.6 0.014 2.9E-07 53.3 8.8 78 78-175 307-388 (584)
100 KOG1683 Hydroxyacyl-CoA dehydr 96.5 0.0012 2.6E-08 56.3 1.6 94 79-175 65-158 (380)
101 cd07020 Clp_protease_NfeD_1 No 96.4 0.02 4.3E-07 44.5 7.8 66 82-175 2-71 (187)
102 cd07021 Clp_protease_NfeD_like 94.6 0.2 4.4E-06 38.8 7.5 60 94-175 9-68 (178)
103 COG0074 SucD Succinyl-CoA synt 91.0 0.91 2E-05 37.8 6.6 23 103-125 188-210 (293)
104 cd07016 S14_ClpP_1 Caseinolyti 89.2 0.76 1.7E-05 34.4 4.6 54 98-175 15-68 (160)
105 PRK10949 protease 4; Provision 88.5 2.6 5.6E-05 38.9 8.2 76 78-174 325-405 (618)
106 TIGR00705 SppA_67K signal pept 88.2 1.3 2.9E-05 40.5 6.1 59 99-174 77-135 (584)
107 PF13607 Succ_CoA_lig: Succiny 87.4 2 4.3E-05 31.9 5.7 50 102-174 41-90 (138)
108 TIGR00237 xseA exodeoxyribonuc 85.9 2.1 4.5E-05 37.7 5.9 58 97-172 169-226 (432)
109 PTZ00187 succinyl-CoA syntheta 85.1 2.8 6E-05 35.5 6.1 24 102-125 211-234 (317)
110 PF02601 Exonuc_VII_L: Exonucl 84.7 3 6.5E-05 34.8 6.2 56 98-172 55-114 (319)
111 PLN02522 ATP citrate (pro-S)-l 81.9 3.9 8.6E-05 37.6 6.1 23 103-125 210-233 (608)
112 PRK10949 protease 4; Provision 80.8 6.9 0.00015 36.2 7.3 59 98-173 95-153 (618)
113 COG1570 XseA Exonuclease VII, 78.8 4.6 9.9E-05 35.7 5.2 17 156-172 216-232 (440)
114 PF00549 Ligase_CoA: CoA-ligas 75.6 11 0.00025 28.4 6.0 28 95-125 56-83 (153)
115 PRK00286 xseA exodeoxyribonucl 75.2 8 0.00017 33.9 5.9 18 155-172 214-231 (438)
116 PLN00125 Succinyl-CoA ligase [ 71.4 11 0.00023 31.7 5.5 24 102-125 192-215 (300)
117 TIGR02717 AcCoA-syn-alpha acet 69.1 12 0.00025 33.1 5.5 51 101-174 189-239 (447)
118 cd07013 S14_ClpP Caseinolytic 68.7 19 0.00041 27.2 5.9 59 95-174 9-67 (162)
119 PRK06091 membrane protein FdrA 65.9 20 0.00044 32.7 6.3 50 102-174 239-288 (555)
120 KOG1255 Succinyl-CoA synthetas 65.2 14 0.0003 30.4 4.7 54 102-174 218-271 (329)
121 PRK05678 succinyl-CoA syntheta 63.7 24 0.00051 29.5 6.0 24 102-125 187-210 (291)
122 COG0793 Prc Periplasmic protea 63.1 7.1 0.00015 34.2 2.9 49 81-136 205-255 (406)
123 TIGR01019 sucCoAalpha succinyl 62.0 23 0.00051 29.5 5.7 24 102-125 185-208 (286)
124 cd07015 Clp_protease_NfeD Nodu 61.1 47 0.001 25.5 6.9 57 95-173 10-66 (172)
125 smart00870 Asparaginase Aspara 60.1 39 0.00085 28.5 6.8 33 93-125 55-88 (323)
126 PLN02312 acyl-CoA oxidase 52.9 13 0.00028 34.8 2.9 22 1-22 1-24 (680)
127 TIGR02153 gatD_arch glutamyl-t 45.6 86 0.0019 27.5 6.8 33 93-125 118-150 (404)
128 TIGR00377 ant_ant_sig anti-ant 44.6 92 0.002 20.9 5.7 48 71-125 5-52 (108)
129 COG0616 SppA Periplasmic serin 44.4 90 0.002 26.3 6.5 24 100-123 82-105 (317)
130 PF03464 eRF1_2: eRF1 domain 2 44.1 47 0.001 24.0 4.3 44 82-125 26-83 (133)
131 PRK14558 pyrH uridylate kinase 42.9 99 0.0021 24.4 6.3 39 93-134 18-56 (231)
132 smart00463 SMR Small MutS-rela 40.8 59 0.0013 21.1 4.0 29 97-125 12-41 (80)
133 PF01713 Smr: Smr domain; Int 40.7 42 0.00091 21.9 3.3 29 97-125 9-37 (83)
134 COG4032 Predicted thiamine-pyr 39.6 35 0.00076 25.8 2.9 37 100-136 27-64 (172)
135 PRK14053 methyltransferase; Pr 39.2 26 0.00057 27.4 2.3 63 78-140 21-89 (194)
136 PF01740 STAS: STAS domain; I 38.9 1.1E+02 0.0024 20.8 5.5 43 78-125 7-57 (117)
137 COG0528 PyrH Uridylate kinase 36.7 1.5E+02 0.0033 24.1 6.4 55 66-129 3-57 (238)
138 PF04208 MtrA: Tetrahydrometha 35.8 27 0.00059 27.0 1.9 62 78-139 21-91 (176)
139 PRK00964 tetrahydromethanopter 35.1 32 0.0007 27.7 2.3 63 78-140 24-96 (225)
140 cd04241 AAK_FomA-like AAK_FomA 34.9 88 0.0019 25.0 4.9 36 87-125 12-47 (252)
141 PF00710 Asparaginase: Asparag 34.9 93 0.002 26.1 5.2 31 93-125 52-83 (313)
142 KOG0595 Serine/threonine-prote 34.4 25 0.00055 30.9 1.7 33 129-161 90-122 (429)
143 PRK04183 glutamyl-tRNA(Gln) am 34.3 1.5E+02 0.0033 26.1 6.6 33 93-125 131-163 (419)
144 COG0488 Uup ATPase components 34.3 61 0.0013 29.5 4.2 44 83-134 460-503 (530)
145 COG2201 CheB Chemotaxis respon 34.1 1.6E+02 0.0034 25.5 6.4 52 70-125 235-286 (350)
146 COG0252 AnsB L-asparaginase/ar 33.8 1.7E+02 0.0037 25.2 6.6 33 93-125 78-111 (351)
147 TIGR01111 mtrA N5-methyltetrah 33.8 35 0.00077 27.5 2.3 63 78-140 24-96 (238)
148 TIGR02886 spore_II_AA anti-sig 33.8 1.5E+02 0.0032 19.9 6.3 50 73-130 3-52 (106)
149 PRK11778 putative inner membra 32.9 1.8E+02 0.0039 24.8 6.6 17 158-174 147-163 (330)
150 KOG0062 ATPase component of AB 32.5 60 0.0013 29.7 3.7 42 84-133 504-545 (582)
151 PRK09461 ansA cytoplasmic aspa 32.2 2.2E+02 0.0048 24.1 7.1 32 93-125 61-92 (335)
152 TIGR02832 spo_yunB sporulation 32.0 33 0.00071 27.2 1.9 47 65-112 60-107 (204)
153 PF06935 DUF1284: Protein of u 32.0 80 0.0017 22.0 3.7 31 95-125 2-32 (103)
154 PRK05333 NAD-dependent deacety 31.1 70 0.0015 26.4 3.8 32 95-132 4-35 (285)
155 PF02350 Epimerase_2: UDP-N-ac 30.6 75 0.0016 26.9 4.0 44 78-123 179-222 (346)
156 COG1030 NfeD Membrane-bound se 30.6 3.9E+02 0.0085 23.8 9.3 68 78-172 25-92 (436)
157 PRK13505 formate--tetrahydrofo 30.6 85 0.0018 28.8 4.4 24 152-175 359-382 (557)
158 PF02358 Trehalose_PPase: Treh 30.4 86 0.0019 24.7 4.1 28 98-125 19-46 (235)
159 TIGR00520 asnASE_II L-asparagi 30.1 1.9E+02 0.0041 24.8 6.3 31 93-123 83-113 (349)
160 PLN02636 acyl-coenzyme A oxida 29.8 56 0.0012 30.7 3.3 17 7-23 16-32 (686)
161 PF04536 TPM: TLP18.3, Psb32 a 29.0 77 0.0017 21.7 3.3 29 95-123 2-30 (119)
162 PF04439 Adenyl_transf: Strept 29.0 58 0.0013 27.0 3.0 21 105-125 10-30 (282)
163 PLN00049 carboxyl-terminal pro 28.7 1.1E+02 0.0025 26.4 4.8 44 79-129 194-239 (389)
164 cd07561 Peptidase_S41_CPP_like 28.7 1.2E+02 0.0026 24.6 4.7 41 78-125 63-105 (256)
165 PF00614 PLDc: Phospholipase D 28.6 25 0.00053 18.7 0.5 19 117-137 8-26 (28)
166 TIGR03821 AblA_like_1 lysine-2 28.4 68 0.0015 27.0 3.3 24 101-125 128-151 (321)
167 TIGR03328 salvage_mtnB methylt 28.0 56 0.0012 25.2 2.6 36 97-137 137-172 (193)
168 cd03225 ABC_cobalt_CbiO_domain 27.8 1.7E+02 0.0038 22.2 5.4 37 83-123 155-191 (211)
169 PF12268 DUF3612: Protein of u 27.5 35 0.00075 25.9 1.2 23 115-138 79-101 (178)
170 PRK06357 hypothetical protein; 26.3 75 0.0016 25.2 3.1 41 96-138 141-181 (216)
171 PF00763 THF_DHG_CYH: Tetrahyd 25.9 73 0.0016 22.6 2.7 24 101-124 73-96 (117)
172 PLN02287 3-ketoacyl-CoA thiola 25.8 58 0.0013 28.9 2.6 39 5-46 1-41 (452)
173 cd03255 ABC_MJ0796_Lo1CDE_FtsE 25.6 1.9E+02 0.0042 22.1 5.3 40 83-125 161-200 (218)
174 PF13304 AAA_21: AAA domain; P 25.4 2.1E+02 0.0045 21.2 5.4 38 82-122 259-296 (303)
175 TIGR02211 LolD_lipo_ex lipopro 25.3 2E+02 0.0043 22.1 5.3 40 83-125 162-201 (221)
176 PTZ00410 NAD-dependent SIR2; P 25.2 1.1E+02 0.0024 26.4 4.0 37 92-132 9-45 (349)
177 COG3356 Predicted membrane pro 25.2 5.5E+02 0.012 23.8 11.9 54 68-132 434-487 (578)
178 PF01990 ATP-synt_F: ATP synth 25.1 77 0.0017 21.4 2.6 24 100-123 27-50 (95)
179 PRK00742 chemotaxis-specific m 25.0 2.3E+02 0.0051 23.6 6.0 46 79-126 249-294 (354)
180 cd03267 ABC_NatA_like Similar 25.0 2.2E+02 0.0048 22.3 5.6 40 83-125 174-213 (236)
181 cd03300 ABC_PotA_N PotA is an 24.9 1.9E+02 0.0042 22.5 5.2 39 83-123 151-189 (232)
182 TIGR00519 asnASE_I L-asparagin 24.8 2.6E+02 0.0056 23.7 6.3 32 93-125 57-88 (336)
183 cd00477 FTHFS Formyltetrahydro 24.8 1.9E+02 0.0041 26.4 5.5 24 152-175 343-366 (524)
184 cd03216 ABC_Carb_Monos_I This 23.6 2.6E+02 0.0057 20.5 5.5 38 83-124 103-140 (163)
185 PRK10584 putative ABC transpor 23.6 2.2E+02 0.0048 22.0 5.3 39 83-123 167-205 (228)
186 KOG3997 Major apurinic/apyrimi 23.5 1E+02 0.0022 25.1 3.2 54 79-136 138-191 (281)
187 cd03297 ABC_ModC_molybdenum_tr 23.5 2.1E+02 0.0046 21.9 5.2 38 83-122 152-189 (214)
188 PRK03195 hypothetical protein; 23.2 1.8E+02 0.0038 22.8 4.5 53 78-132 119-172 (186)
189 cd03298 ABC_ThiQ_thiamine_tran 23.1 2.2E+02 0.0049 21.6 5.2 38 83-122 149-186 (211)
190 PRK14138 NAD-dependent deacety 23.1 73 0.0016 25.7 2.5 17 117-134 13-29 (244)
191 PRK14556 pyrH uridylate kinase 23.0 1.7E+02 0.0037 23.9 4.6 55 68-131 15-69 (249)
192 COG1830 FbaB DhnA-type fructos 22.9 4.3E+02 0.0094 21.9 6.9 33 96-129 125-157 (265)
193 cd03235 ABC_Metallic_Cations A 22.9 2.4E+02 0.0053 21.5 5.4 39 83-125 153-191 (213)
194 cd03214 ABC_Iron-Siderophores_ 22.8 2.4E+02 0.0053 21.0 5.3 39 83-124 118-156 (180)
195 smart00245 TSPc tail specific 22.7 2.4E+02 0.0052 21.5 5.2 37 79-122 28-64 (192)
196 cd07043 STAS_anti-anti-sigma_f 22.5 2.2E+02 0.0048 18.3 4.8 42 78-125 6-47 (99)
197 PRK12553 ATP-dependent Clp pro 22.4 3.8E+02 0.0083 20.9 6.7 57 95-174 44-102 (207)
198 TIGR01277 thiQ thiamine ABC tr 22.3 2.5E+02 0.0054 21.5 5.3 38 83-122 149-186 (213)
199 TIGR03410 urea_trans_UrtE urea 22.2 2.6E+02 0.0056 21.6 5.5 40 83-125 152-191 (230)
200 PRK02228 V-type ATP synthase s 21.9 1.3E+02 0.0029 20.7 3.3 23 101-123 30-52 (100)
201 PF14532 Sigma54_activ_2: Sigm 21.8 2.9E+02 0.0062 19.6 5.3 38 84-125 73-110 (138)
202 cd03261 ABC_Org_Solvent_Resist 21.7 2.4E+02 0.0051 21.9 5.2 40 83-125 157-196 (235)
203 cd03259 ABC_Carb_Solutes_like 21.7 2.5E+02 0.0053 21.4 5.2 40 83-125 151-190 (213)
204 PRK10908 cell division protein 21.6 2.7E+02 0.0059 21.4 5.5 38 83-124 158-195 (222)
205 PRK10247 putative ABC transpor 21.6 2.5E+02 0.0054 21.8 5.2 40 83-124 158-197 (225)
206 cd03265 ABC_DrrA DrrA is the A 21.5 2.6E+02 0.0057 21.4 5.4 39 83-123 152-190 (220)
207 cd03229 ABC_Class3 This class 21.4 2.8E+02 0.0061 20.6 5.4 39 83-124 121-159 (178)
208 cd03301 ABC_MalK_N The N-termi 21.3 2.5E+02 0.0055 21.3 5.2 39 83-124 151-189 (213)
209 PRK13646 cbiO cobalt transport 21.2 2.4E+02 0.0053 22.9 5.3 40 83-124 166-205 (286)
210 cd03257 ABC_NikE_OppD_transpor 21.1 2.6E+02 0.0055 21.5 5.2 39 83-124 166-204 (228)
211 COG2840 Uncharacterized protei 21.0 2.1E+02 0.0045 22.4 4.5 37 95-134 104-141 (184)
212 TIGR01184 ntrCD nitrate transp 20.9 2.7E+02 0.0059 21.7 5.3 38 83-122 135-172 (230)
213 TIGR00960 3a0501s02 Type II (G 20.8 2.9E+02 0.0063 21.1 5.5 39 83-125 159-197 (216)
214 cd03293 ABC_NrtD_SsuB_transpor 20.8 2.7E+02 0.0059 21.4 5.3 38 83-122 152-189 (220)
215 cd02975 PfPDO_like_N Pyrococcu 20.7 2.6E+02 0.0056 19.3 4.7 36 93-130 1-37 (113)
216 PF01268 FTHFS: Formate--tetra 20.5 1.4E+02 0.0031 27.4 4.0 66 107-174 315-380 (557)
217 COG4637 Predicted ATPase [Gene 20.4 2.3E+02 0.005 24.5 4.9 41 81-125 291-331 (373)
218 cd03230 ABC_DR_subfamily_A Thi 20.3 2.9E+02 0.0064 20.4 5.2 37 83-122 116-152 (173)
219 cd04239 AAK_UMPK-like AAK_UMPK 20.3 1.8E+02 0.0039 22.9 4.2 36 94-132 17-52 (229)
220 PRK11831 putative ABC transpor 20.3 2.7E+02 0.0058 22.4 5.3 40 83-125 164-203 (269)
221 PRK00481 NAD-dependent deacety 20.1 1.3E+02 0.0027 24.1 3.3 16 117-133 15-30 (242)
222 cd03256 ABC_PhnC_transporter A 20.1 2.6E+02 0.0057 21.7 5.1 39 83-123 165-203 (241)
223 PRK11701 phnK phosphonate C-P 20.1 2.7E+02 0.0059 22.0 5.3 39 83-123 172-210 (258)
No 1
>PLN02921 naphthoate synthase
Probab=100.00 E-value=1.8e-34 Score=242.49 Aligned_cols=171 Identities=70% Similarity=1.041 Sum_probs=139.5
Q ss_pred hHHHHHHHHHhhhccccCCcCCCCCCcccccCCCCCCccccccCCCccccchhhhhccCCCCCcccEEEEEEeCCCEEEE
Q 030579 5 IDSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKI 84 (175)
Q Consensus 5 ~~~~~~r~~~i~~hl~~~~~~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~V~~I 84 (175)
|+++.||++++++||.+.....+..+....+....+++|++.|+.++.+|..|...++++..+|+.|.++++.+++|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Va~I 80 (327)
T PLN02921 1 MDAARRRLARVANHLVPSANPASMAAARSSSATAPPDSYRRVHGDVSSEPVVWRKVPDGSGKEFTDIIYEKAVGEGIAKI 80 (327)
T ss_pred CchhhhHHHHHhcccCcccccccccccccccccCCCCchhhhccccCCCCccccccccCCccCCceEEEEEecCCCEEEE
Confidence 78999999999999986644444444333344478899999999999999999998888888999999987335899999
Q ss_pred EEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHHHHHHhcC
Q 030579 85 TINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRL 164 (175)
Q Consensus 85 tLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 164 (175)
+||||+++|+|+.+|+.+|.++|+.++.|+++++|||+|.|+++||+|+|++++.................+++.+|.++
T Consensus 81 tLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 160 (327)
T PLN02921 81 TINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRL 160 (327)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999998779999999997753221111111111234567789999
Q ss_pred CCcEEEEeeCC
Q 030579 165 PKPVIAMVHLP 175 (175)
Q Consensus 165 ~kPvIAaV~G~ 175 (175)
+||+||+|||+
T Consensus 161 ~kPvIAaVnG~ 171 (327)
T PLN02921 161 PKPVIAMVAGY 171 (327)
T ss_pred CCCEEEEECCE
Confidence 99999999996
No 2
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=99.90 E-value=3.5e-24 Score=167.96 Aligned_cols=109 Identities=64% Similarity=0.995 Sum_probs=97.1
Q ss_pred CCcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecC--CCCcccCCCCCCcccc-CC
Q 030579 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK--GTEAFCSGGDQALRTR-DG 142 (175)
Q Consensus 66 ~~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~--g~~~FcaG~Dl~~~~~-~~ 142 (175)
..|+.|.+++. -++|+.|+||||+++|+|.+.++.||.++|..++.|++|.||||||. |+++||+|+|.+.... .+
T Consensus 15 ~~y~dI~Y~~~-~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~g 93 (282)
T COG0447 15 EGYEDITYEKS-VDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGG 93 (282)
T ss_pred CCcceeEEeec-cCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCC
Confidence 46899999995 48999999999999999999999999999999999999999999975 8899999999997766 55
Q ss_pred ccchhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 143 YADYENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
+...+...+..+.++++.|+.+||||||+|+|+
T Consensus 94 Y~~d~~~~rLnvLdlQrlIR~~PKpViA~V~G~ 126 (282)
T COG0447 94 YVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGY 126 (282)
T ss_pred ccCCccCcccchhhHHHHHHhCCcceEEEEeeE
Confidence 555555566677888999999999999999995
No 3
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=99.90 E-value=1.3e-23 Score=172.65 Aligned_cols=108 Identities=65% Similarity=1.007 Sum_probs=87.4
Q ss_pred CCcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccc
Q 030579 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (175)
Q Consensus 66 ~~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~ 145 (175)
.+++.+.++. +++|++|+||||+++|+|+.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++.......
T Consensus 10 ~~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~ 87 (273)
T PRK07396 10 KEYEDILYKS--ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVD 87 (273)
T ss_pred CCCcceEEEe--cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccc
Confidence 4567889987 89999999999999999999999999999999999999999999999856999999999864321111
Q ss_pred hhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 146 YENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
...........++..+.++|||+||+|||+
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 117 (273)
T PRK07396 88 DDGVPRLNVLDLQRLIRTCPKPVIAMVAGY 117 (273)
T ss_pred hhhhhhhHHHHHHHHHHhCCCCEEEEECCE
Confidence 111111123456678999999999999996
No 4
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=99.90 E-value=1.2e-23 Score=171.49 Aligned_cols=106 Identities=25% Similarity=0.273 Sum_probs=87.6
Q ss_pred cccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchh
Q 030579 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (175)
Q Consensus 68 ~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (175)
..++.++.. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.........
T Consensus 5 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 83 (256)
T PRK06143 5 NAHAGVTRD-DRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAE 83 (256)
T ss_pred cccceeeec-CCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHH
Confidence 345777764 7899999999999999999999999999999999999999999999986799999999987543222221
Q ss_pred hhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 148 NFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
. ....++.++.+|.++|||+||+|||+
T Consensus 84 ~-~~~~~~~~~~~l~~~~kPvIAav~G~ 110 (256)
T PRK06143 84 A-FISRLRDLCDAVRHFPVPVIARIPGW 110 (256)
T ss_pred H-HHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 1 22234677888999999999999996
No 5
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=99.90 E-value=1.6e-23 Score=170.94 Aligned_cols=107 Identities=34% Similarity=0.411 Sum_probs=89.3
Q ss_pred CCcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccc
Q 030579 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (175)
Q Consensus 66 ~~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~ 145 (175)
|+|+.+.++. +++|++|+||||+++|+|+.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++.......
T Consensus 1 ~~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~ 78 (260)
T PRK05809 1 MELKNVILEK--EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEE 78 (260)
T ss_pred CCcceEEEEE--eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHH
Confidence 3567788887 79999999999999999999999999999999999999999999999878999999999875432211
Q ss_pred hhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 146 YENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
... .......++.+|.++|||+||+|||+
T Consensus 79 ~~~-~~~~~~~~~~~l~~~~kPvIaav~G~ 107 (260)
T PRK05809 79 GRK-FGLLGNKVFRKLENLDKPVIAAINGF 107 (260)
T ss_pred HHH-HHHHHHHHHHHHHcCCCCEEEEEcCe
Confidence 111 12224567788999999999999996
No 6
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=99.90 E-value=1.7e-23 Score=171.05 Aligned_cols=107 Identities=26% Similarity=0.311 Sum_probs=87.9
Q ss_pred CcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccch
Q 030579 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (175)
Q Consensus 67 ~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~ 146 (175)
..+.+.++. +++|++|+||||+++|+|+.+|+++|.++++.++.|+++|+|||+|.|+++||+|+|++++........
T Consensus 6 ~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~ 83 (262)
T PRK06144 6 STDELLLEV--RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAED 83 (262)
T ss_pred CCCceEEEe--eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhH
Confidence 345688887 899999999999999999999999999999999999999999999998679999999998754322111
Q ss_pred hhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 147 ENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.......+..++.+|.++|||+||+|||+
T Consensus 84 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 112 (262)
T PRK06144 84 AVAYERRIDRVLGALEQLRVPTIAAIAGA 112 (262)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 11122234567778999999999999996
No 7
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=99.90 E-value=1.7e-23 Score=170.51 Aligned_cols=104 Identities=47% Similarity=0.697 Sum_probs=86.2
Q ss_pred cccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchh
Q 030579 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (175)
Q Consensus 68 ~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (175)
|+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++..... ...
T Consensus 1 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~~ 77 (256)
T TIGR03210 1 YEDILYEK--RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-GRG 77 (256)
T ss_pred CCceEEEe--eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-chh
Confidence 34578887 799999999999999999999999999999999999999999999998679999999998743111 111
Q ss_pred hhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 148 NFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.....+..++.+|..+|||+||+|||+
T Consensus 78 -~~~~~~~~~~~~l~~~~kPvIaav~G~ 104 (256)
T TIGR03210 78 -TIGLPMEELHSAIRDVPKPVIARVQGY 104 (256)
T ss_pred -HHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 112224567788999999999999996
No 8
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=99.90 E-value=2.1e-23 Score=170.86 Aligned_cols=108 Identities=27% Similarity=0.461 Sum_probs=87.9
Q ss_pred CCcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccc
Q 030579 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (175)
Q Consensus 66 ~~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~ 145 (175)
++|+++.++.+ +++|++|+||||+++|+|+.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.......
T Consensus 2 ~~~~~l~~~~~-~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~ 79 (265)
T PRK05674 2 SDFQTIELIRD-PRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRG-RHFSAGADLAWMQQSADLD 79 (265)
T ss_pred CCcceEEEEEc-CCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhccccc
Confidence 35778999873 478999999999999999999999999999999999999999999999 8999999999764321111
Q ss_pred --hhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 146 --YENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 146 --~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
........+..++.++.++|||+||+|||+
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~ 111 (265)
T PRK05674 80 YNTNLDDARELAELMYNLYRLKIPTLAVVQGA 111 (265)
T ss_pred chhhhHHHHHHHHHHHHHHcCCCCEEEEEcCE
Confidence 010111224567788999999999999996
No 9
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=99.90 E-value=2.3e-23 Score=170.09 Aligned_cols=106 Identities=36% Similarity=0.542 Sum_probs=87.6
Q ss_pred CcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCc-c-
Q 030579 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-A- 144 (175)
Q Consensus 67 ~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~-~- 144 (175)
.|+.+.++. +++|++||||||+++|+|+.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++..... .
T Consensus 2 ~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~ 78 (262)
T PRK05995 2 MYETLEIEQ--RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAG-KAFCAGADLNWMKKMAGYSD 78 (262)
T ss_pred CCceEEEEe--eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CccccCcCHHHHhhhcccCc
Confidence 466788887 799999999999999999999999999999999999999999999999 89999999998643211 1
Q ss_pred chhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 145 DYENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 145 ~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.........+.+++.+|.++|||+||+|||+
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 109 (262)
T PRK05995 79 DENRADARRLADMLRAIYRCPKPVIARVHGD 109 (262)
T ss_pred hhhhhHHHHHHHHHHHHHcCCCCEEEEECCE
Confidence 1111111234677888999999999999996
No 10
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=99.90 E-value=2.4e-23 Score=169.59 Aligned_cols=106 Identities=35% Similarity=0.485 Sum_probs=88.3
Q ss_pred CcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccch
Q 030579 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (175)
Q Consensus 67 ~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~ 146 (175)
.+..+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+||+++........
T Consensus 3 ~~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g-~~FsaG~Dl~~~~~~~~~~~ 79 (257)
T COG1024 3 TYETILVER--EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAG-KAFSAGADLKELLSPEDGNA 79 (257)
T ss_pred CCCeeEEEe--eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhcccchhH
Confidence 455677777 677999999999999999999999999999999999999999999999 99999999998875111111
Q ss_pred hhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 147 ENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
........+.++.++.+++|||||+|||+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 108 (257)
T COG1024 80 AENLMQPGQDLLRALADLPKPVIAAVNGY 108 (257)
T ss_pred HHHHHhHHHHHHHHHHhCCCCEEEEEcce
Confidence 11222334668899999999999999996
No 11
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=99.90 E-value=2.9e-23 Score=170.39 Aligned_cols=107 Identities=26% Similarity=0.309 Sum_probs=87.8
Q ss_pred CCcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCc--
Q 030579 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-- 143 (175)
Q Consensus 66 ~~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~-- 143 (175)
+.++.|.+++ +++|++|+||||+++|+||.+|+.+|.++|++++.|+++|+|||+|.| ++||+|+|++++.....
T Consensus 3 ~~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~ 79 (272)
T PRK06142 3 TTYESFTVEL--ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSG-KHFSYGIDLPAMAGVFGQL 79 (272)
T ss_pred CCcceEEEEe--cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhhhcccc
Confidence 3456788987 899999999999999999999999999999999999999999999999 89999999998743110
Q ss_pred ------cchhhh--hHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 144 ------ADYENF--GRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 144 ------~~~~~~--~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
...... ....+.+++.+|.+||||+||+|||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~ 119 (272)
T PRK06142 80 GKDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGW 119 (272)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc
Confidence 001111 12234567788999999999999996
No 12
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=99.90 E-value=3.4e-23 Score=169.06 Aligned_cols=106 Identities=65% Similarity=0.978 Sum_probs=84.4
Q ss_pred ccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhh
Q 030579 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (175)
Q Consensus 69 ~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (175)
+.+.+++. +++|++|+||||+++|+|+.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++..........
T Consensus 2 ~~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 80 (259)
T TIGR01929 2 TDIRYEKS-TDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSG 80 (259)
T ss_pred ceEEEEEc-CCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhh
Confidence 45677652 68899999999999999999999999999999999999999999999867999999998764321111111
Q ss_pred hhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 149 FGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 149 ~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.....+..++.++..+|||+||+|||+
T Consensus 81 ~~~~~~~~~~~~l~~~~kPvIAav~G~ 107 (259)
T TIGR01929 81 VHRLNVLDVQRQIRTCPKPVIAMVNGY 107 (259)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 111123456778999999999999996
No 13
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=99.90 E-value=3.6e-23 Score=170.34 Aligned_cols=107 Identities=31% Similarity=0.443 Sum_probs=87.7
Q ss_pred CCcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCc-c
Q 030579 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-A 144 (175)
Q Consensus 66 ~~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~-~ 144 (175)
.+|++|.++. +++|++|+||||+++|+|+.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++..... .
T Consensus 5 ~~~~~i~~~~--~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~ 81 (275)
T PRK09120 5 NRWDTVKVEV--EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAG-DAWSAGMDLKEYFRETDAQ 81 (275)
T ss_pred cccccEEEEE--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCC-CceecCcCHHHHhhccccc
Confidence 3567899988 799999999999999999999999999999999999999999999999 89999999997643111 1
Q ss_pred ch--hhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 145 DY--ENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 145 ~~--~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.. .......++.++.+|..|||||||+|||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 114 (275)
T PRK09120 82 PEILQERIRREAYGWWRRLRWYQKPTIAMVNGW 114 (275)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 11 11111224566788999999999999996
No 14
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=99.90 E-value=4.7e-23 Score=167.29 Aligned_cols=102 Identities=30% Similarity=0.435 Sum_probs=85.2
Q ss_pred cEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhh
Q 030579 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (175)
Q Consensus 70 ~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (175)
.+.++. +++|++|+||||+++|+||.+|+++|.++++.++.|+++|+|||+|.| +.||+|+|++++...........
T Consensus 4 ~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 80 (249)
T PRK05870 4 PVLLDV--DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAG-KAFCAGADLTALGAAPGRPAEDG 80 (249)
T ss_pred cEEEEc--cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCeecCcChHHHhcccccchHHH
Confidence 477777 899999999999999999999999999999999999999999999999 89999999998754322111111
Q ss_pred hHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 150 GRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 150 ~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
. ..+++++..+.++|||+||+|||+
T Consensus 81 ~-~~~~~~~~~l~~~~kPvIaav~G~ 105 (249)
T PRK05870 81 L-RRIYDGFLAVASCPLPTIAAVNGA 105 (249)
T ss_pred H-HHHHHHHHHHHhCCCCEEEEECCE
Confidence 2 224566778999999999999996
No 15
>PRK08139 enoyl-CoA hydratase; Validated
Probab=99.90 E-value=4.4e-23 Score=169.05 Aligned_cols=107 Identities=32% Similarity=0.403 Sum_probs=88.2
Q ss_pred CCcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccc
Q 030579 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (175)
Q Consensus 66 ~~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~ 145 (175)
+....+.++. +++|++|+||||+++|+|+.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.......
T Consensus 8 ~~~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~ 84 (266)
T PRK08139 8 TEAPLLLRED--RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAG-KAFCAGHDLKEMRAARGLA 84 (266)
T ss_pred ccCCceEEEe--eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCC-CcceeccCHHHHhcccchh
Confidence 4456688887 899999999999999999999999999999999999999999999999 8999999999875422111
Q ss_pred hhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 146 YENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
........+.+++.+|.++|||+||+|||+
T Consensus 85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 114 (266)
T PRK08139 85 YFRALFARCSRVMQAIVALPQPVIARVHGI 114 (266)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECce
Confidence 111111224567788999999999999996
No 16
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=5.8e-23 Score=168.08 Aligned_cols=107 Identities=25% Similarity=0.446 Sum_probs=87.5
Q ss_pred CCcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCC-CceEEEEecCCCCcccCCCCCCccccCCcc
Q 030579 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDS-SVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (175)
Q Consensus 66 ~~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~-~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~ 144 (175)
|+|+.+.+++ +++|++|+||||+++|+|+.+|+.+|.++++.++.|+ ++|+|||+|.| ++||+|+|++++......
T Consensus 1 ~~~~~v~~~~--~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~ 77 (266)
T PRK05981 1 MQFKKVTLDF--DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG-RGFCTGANLQGRGSGGRE 77 (266)
T ss_pred CCcceEEEEe--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CCcccccCHHhhhccccc
Confidence 4577788988 7999999999999999999999999999999999876 49999999999 899999999987542111
Q ss_pred -----chhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 145 -----DYENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 145 -----~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.........+.+++.+|.++|||+||+|||+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~ 113 (266)
T PRK05981 78 SDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGP 113 (266)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 1111112224667888999999999999996
No 17
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=4.2e-23 Score=168.39 Aligned_cols=104 Identities=31% Similarity=0.399 Sum_probs=85.4
Q ss_pred cEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCc--cc-h
Q 030579 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY--AD-Y 146 (175)
Q Consensus 70 ~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~--~~-~ 146 (175)
.|.++. +++|++|+||||+++|+|+.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++..... .. .
T Consensus 4 ~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (260)
T PRK05980 4 TVLIEI--RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVA 81 (260)
T ss_pred eEEEEE--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhh
Confidence 477877 899999999999999999999999999999999999999999999998679999999997644211 11 1
Q ss_pred hhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 147 ENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.......++.++.+|.++|||+||+|||+
T Consensus 82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 110 (260)
T PRK05980 82 LRDFVRRGQAMTARLEAFPKPVIAAVNGL 110 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 11122224567788999999999999996
No 18
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=5.6e-23 Score=170.99 Aligned_cols=107 Identities=32% Similarity=0.434 Sum_probs=84.0
Q ss_pred CCcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCc-ccc---C
Q 030579 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQAL-RTR---D 141 (175)
Q Consensus 66 ~~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~-~~~---~ 141 (175)
+.++.+.++. +++|++|+||||+++|+|+.+|+.+|.++|+.++.|+++|+|||||.| ++||+|+||++ +.. .
T Consensus 2 ~~~~~v~~~~--~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G-~~FcaG~Dl~~~~~~~~~~ 78 (298)
T PRK12478 2 PDFQTLLYTT--AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAG-RAFSGGYDFGGGFQHWGEA 78 (298)
T ss_pred CCceEEEEec--cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCccccccccchh
Confidence 3456788887 899999999999999999999999999999999999999999999999 89999999986 321 0
Q ss_pred ----Cc-cchhhhh---Hh--hHHHHHHHHhcCCCcEEEEeeCC
Q 030579 142 ----GY-ADYENFG---RL--NVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 142 ----~~-~~~~~~~---~~--~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.. .....+. .. .....+.+|.+++||+||+|||+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~ 122 (298)
T PRK12478 79 MMTDGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGW 122 (298)
T ss_pred cccccccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccE
Confidence 00 0011110 00 11234667899999999999996
No 19
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=5.6e-23 Score=167.95 Aligned_cols=106 Identities=28% Similarity=0.468 Sum_probs=85.7
Q ss_pred cccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCc-c-c
Q 030579 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-A-D 145 (175)
Q Consensus 68 ~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~-~-~ 145 (175)
|+.+.++++ +++|++|+||||+++|+|+.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... . .
T Consensus 3 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 80 (262)
T PRK07468 3 FETIRIAVD-ARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAG-KSFCAGGDLGWMRAQMTADRA 80 (262)
T ss_pred cceEEEEEc-CCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CcccCCcCHHHHHhhcccchh
Confidence 456888773 468999999999999999999999999999999999999999999999 89999999998643111 1 1
Q ss_pred hhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 146 YENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
........+..++.+|..+|||+||+|||+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 110 (262)
T PRK07468 81 TRIEEARRLAMMLKALNDLPKPLIGRIQGQ 110 (262)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCEEEEECCE
Confidence 111111224567788999999999999996
No 20
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=5.8e-23 Score=167.40 Aligned_cols=102 Identities=28% Similarity=0.386 Sum_probs=85.7
Q ss_pred cccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchh
Q 030579 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (175)
Q Consensus 68 ~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (175)
++.+.+++ +++|++|+||||+++|+|+.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.......
T Consensus 3 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~-- 77 (257)
T PRK05862 3 YETILVET--RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSE-KAFAAGADIKEMADLSFMD-- 77 (257)
T ss_pred CceEEEEe--eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CceECCcChHhHhccchhH--
Confidence 45688887 789999999999999999999999999999999999999999999999 8999999999875432111
Q ss_pred hhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 148 NFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
. ....+..++.+|.++|||+||+|||+
T Consensus 78 ~-~~~~~~~~~~~l~~~~kpvIaav~G~ 104 (257)
T PRK05862 78 V-YKGDYITNWEKVARIRKPVIAAVAGY 104 (257)
T ss_pred H-HHHHHHHHHHHHHhCCCCEEEEEccE
Confidence 1 11223456778999999999999996
No 21
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=5.3e-23 Score=167.94 Aligned_cols=103 Identities=28% Similarity=0.395 Sum_probs=87.3
Q ss_pred CcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccch
Q 030579 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (175)
Q Consensus 67 ~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~ 146 (175)
.++.+.++. +++|++|+||||+++|+|+.+|+++|.++++.++.|+++|+|||+|.| ++||+|+|++++........
T Consensus 2 ~~~~v~~~~--~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~ 78 (258)
T PRK06190 2 TEPILLVET--HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGAD-PAFCAGLDLKELGGDGSAYG 78 (258)
T ss_pred CCceEEEEe--eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCccCCcCHHHHhcccchhh
Confidence 456688887 899999999999999999999999999999999999999999999999 89999999998754321111
Q ss_pred hhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 147 ENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
. ...+++++.+|.++|||+||+|||+
T Consensus 79 ~---~~~~~~~~~~i~~~~kPvIAaV~G~ 104 (258)
T PRK06190 79 A---QDALPNPSPAWPAMRKPVIGAINGA 104 (258)
T ss_pred H---HHHHHHHHHHHHhCCCCEEEEECCE
Confidence 1 1224567788999999999999996
No 22
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=6.1e-23 Score=167.54 Aligned_cols=104 Identities=29% Similarity=0.441 Sum_probs=86.3
Q ss_pred cEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhh
Q 030579 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (175)
Q Consensus 70 ~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (175)
.|.+++. +++|++|+||||+++|+|+.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++..........
T Consensus 4 ~v~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~- 81 (260)
T PRK07657 4 NISVDYV-TPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRH- 81 (260)
T ss_pred eEEEEEc-cCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHH-
Confidence 5777753 68999999999999999999999999999999999999999999999956999999999875422211111
Q ss_pred hHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 150 GRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 150 ~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
....++.++.+|.+||||+||+|||+
T Consensus 82 ~~~~~~~~~~~l~~~~kPvIaav~G~ 107 (260)
T PRK07657 82 AVSLIRTTMEMVEQLPQPVIAAINGI 107 (260)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 12234677888999999999999996
No 23
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=6.7e-23 Score=167.40 Aligned_cols=105 Identities=32% Similarity=0.478 Sum_probs=85.4
Q ss_pred CcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCc---
Q 030579 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY--- 143 (175)
Q Consensus 67 ~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~--- 143 (175)
.|+.+.++. +++|++||||||+++|+|+.+|+.+|.++++.++ |+++++|||+|.| ++||+|+|++++.....
T Consensus 2 ~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~ 77 (262)
T PRK08140 2 MYETILLAI--EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAG-RGFCAGQDLADRDVTPGGAM 77 (262)
T ss_pred CCceEEEEe--ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCC-CCcccCcChHHHhccccccc
Confidence 456688887 7999999999999999999999999999999999 9999999999999 89999999998743211
Q ss_pred cchhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 144 ADYENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 144 ~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
..........+..++.++.++|||+||+|||+
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 109 (262)
T PRK08140 78 PDLGESIETFYNPLVRRLRALPLPVIAAVNGV 109 (262)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 11111111223456778999999999999996
No 24
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=8.8e-23 Score=167.36 Aligned_cols=107 Identities=25% Similarity=0.457 Sum_probs=87.3
Q ss_pred CcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCcc-c
Q 030579 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA-D 145 (175)
Q Consensus 67 ~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~-~ 145 (175)
.|+.|.++.. +++|++|+||||+++|+|+.+|+.+|.++|+.++.|+++|+|||||.| ++||+|+||+++...... .
T Consensus 9 ~~~~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~ 86 (268)
T PRK07327 9 DYPALRFDRP-PPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEG-KAFSAGGDLALVEEMADDFE 86 (268)
T ss_pred CCCeEEEEec-CCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCC-CCcccccCHHHHhhccCcHH
Confidence 4667888763 578999999999999999999999999999999999999999999999 899999999977542211 1
Q ss_pred hhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 146 YENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
........+..++..|..+|||+||+|||+
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 116 (268)
T PRK07327 87 VRARVWREARDLVYNVINCDKPIVSAIHGP 116 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCe
Confidence 111111224567788999999999999996
No 25
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=1.1e-22 Score=167.43 Aligned_cols=109 Identities=31% Similarity=0.424 Sum_probs=87.2
Q ss_pred CCCcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCc-
Q 030579 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY- 143 (175)
Q Consensus 65 ~~~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~- 143 (175)
..+++.|.++.. +++|++|+||||+++|+|+.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.....
T Consensus 5 ~~~~~~v~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~~ 82 (276)
T PRK05864 5 RSTMSLVLVDHP-RPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAG-RGFSSGADHKSAGVVPHV 82 (276)
T ss_pred CCCCCceEEeee-cCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcchhhhhccccc
Confidence 345666888763 689999999999999999999999999999999999999999999999 89999999997643110
Q ss_pred -----cchhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 144 -----ADYENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 144 -----~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
..........++.++.+|.+++||+||+|||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 119 (276)
T PRK05864 83 EGLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGP 119 (276)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 00000111224566778899999999999996
No 26
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=1.1e-22 Score=168.48 Aligned_cols=107 Identities=36% Similarity=0.493 Sum_probs=86.6
Q ss_pred CCcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCc--
Q 030579 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-- 143 (175)
Q Consensus 66 ~~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~-- 143 (175)
|+++.+.++. +++|++|+||||+++|+|+.+|+.+|.++++.+++|+++|+|||||.| ++||+|+|++++.....
T Consensus 1 ~~~~~v~~~~--~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G-~~FcaG~Dl~~~~~~~~~~ 77 (288)
T PRK08290 1 MEYEYVRYEV--AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAG-KHFSAGHDLGSGTPGRDRD 77 (288)
T ss_pred CCCceEEEEe--eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CccccCCCccccccccccc
Confidence 3566788887 899999999999999999999999999999999999999999999999 89999999997632111
Q ss_pred ----------------cchhh-h--hHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 144 ----------------ADYEN-F--GRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 144 ----------------~~~~~-~--~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
..... . ....+.+++.+|.++|||+||+|||+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~ 128 (288)
T PRK08290 78 PGPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGA 128 (288)
T ss_pred cccccccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 00000 1 11124566778999999999999996
No 27
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=9.9e-23 Score=166.09 Aligned_cols=105 Identities=29% Similarity=0.408 Sum_probs=85.9
Q ss_pred CcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCc-cc
Q 030579 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-AD 145 (175)
Q Consensus 67 ~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~-~~ 145 (175)
.|+.|.+++ +++|++||||||+ .|+|+.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++..... ..
T Consensus 2 ~~~~i~~~~--~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~~ 77 (257)
T PRK06495 2 MMSQLKLEV--SDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAG-KVFCAGADLKGRPDVIKGPG 77 (257)
T ss_pred CcceEEEEe--eCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCcccCcCHHhHhhccCCch
Confidence 456788887 7999999999998 5999999999999999999999999999999999 89999999998754211 11
Q ss_pred hhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 146 YENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
........+.+++.++.++|||+||+|||+
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 107 (257)
T PRK06495 78 DLRAHNRRTRECFHAIRECAKPVIAAVNGP 107 (257)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 111112234567788999999999999996
No 28
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.89 E-value=1e-22 Score=175.27 Aligned_cols=103 Identities=22% Similarity=0.326 Sum_probs=86.0
Q ss_pred ccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCc----c
Q 030579 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY----A 144 (175)
Q Consensus 69 ~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~----~ 144 (175)
..|.++. .+++++||||||+++|+|+.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... .
T Consensus 42 ~~v~~e~--~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~G-kaFcAGgDl~~l~~~~~~~~~~ 118 (407)
T PLN02851 42 DQVLVEG--RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSG-RAFCSGADVVSLYHLINEGNVE 118 (407)
T ss_pred CCeEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcCHHHHHhhccccchH
Confidence 4578887 789999999999999999999999999999999999999999999999 99999999998754211 1
Q ss_pred chhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 145 DYENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 145 ~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
....++ ...+++...|.++|||+||+|||+
T Consensus 119 ~~~~~f-~~~~~l~~~i~~~pKPvIA~v~G~ 148 (407)
T PLN02851 119 ECKLFF-ENLYKFVYLQGTYLKPNVAIMDGI 148 (407)
T ss_pred HHHHHH-HHHHHHHHHHHhCCCCEEEEEcCE
Confidence 111222 234667778899999999999995
No 29
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=9.3e-23 Score=169.86 Aligned_cols=108 Identities=29% Similarity=0.403 Sum_probs=88.5
Q ss_pred CCCcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCcc
Q 030579 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (175)
Q Consensus 65 ~~~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~ 144 (175)
...++.|.++. +++|++|+||||+++|+|+.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+||+++......
T Consensus 6 ~~~~~~v~~e~--~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G-~~FcaG~Dl~~~~~~~~~ 82 (302)
T PRK08272 6 LDNLKTMTYEV--TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAG-KGFCAGYDLSAYAEGSSS 82 (302)
T ss_pred cCCCCeEEEEe--ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCcCHHHHhhcccc
Confidence 35677899988 789999999999999999999999999999999999999999999999 899999999976432110
Q ss_pred ----c----------------hh---h-hhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 145 ----D----------------YE---N-FGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 145 ----~----------------~~---~-~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
. .. . .....++.++.+|.++|||+||+|||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~ 137 (302)
T PRK08272 83 GGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGY 137 (302)
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccE
Confidence 0 00 0 011234567778999999999999996
No 30
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=7.5e-23 Score=166.57 Aligned_cols=102 Identities=26% Similarity=0.303 Sum_probs=80.3
Q ss_pred EEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhh
Q 030579 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (175)
Q Consensus 71 v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 150 (175)
|.++. +++|++||||||+++|+|+.+|+.+|.++++.++.|+++|+|||+|.| +.||+|+|++++............
T Consensus 1 ~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~ 77 (255)
T PRK06563 1 VSRER--RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHG-EHFTAGLDLADVAPKLAAGGFPFP 77 (255)
T ss_pred CeEEE--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CCCcCCcCHHHHhhccccchhhhh
Confidence 34666 799999999999999999999999999999999999999999999999 899999999987542111111111
Q ss_pred HhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 151 RLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 151 ~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
......+...+.++||||||+|||+
T Consensus 78 ~~~~~~~~~~l~~~~kPvIAav~G~ 102 (255)
T PRK06563 78 EGGIDPWGTVGRRLSKPLVVAVQGY 102 (255)
T ss_pred hhhhHHHHHHHhcCCCCEEEEEcCe
Confidence 1111222235889999999999996
No 31
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=9e-23 Score=167.39 Aligned_cols=105 Identities=30% Similarity=0.401 Sum_probs=86.1
Q ss_pred ccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCc-cchh
Q 030579 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-ADYE 147 (175)
Q Consensus 69 ~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~-~~~~ 147 (175)
+.|.+++ +++|++|+||||+++|+|+.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++..... ....
T Consensus 11 ~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 88 (269)
T PRK06127 11 GKLLAEK--TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAV 88 (269)
T ss_pred CceEEEE--ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHH
Confidence 3478887 799999999999999999999999999999999999999999999998679999999998754211 1111
Q ss_pred hhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 148 NFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.........++.+|..+|||+||+|||+
T Consensus 89 ~~~~~~~~~~~~~i~~~~kPvIaav~G~ 116 (269)
T PRK06127 89 AAYEQAVEAAQAALADYAKPTIACIRGY 116 (269)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 1112224567788999999999999996
No 32
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=99.89 E-value=9.2e-23 Score=166.10 Aligned_cols=100 Identities=25% Similarity=0.404 Sum_probs=84.0
Q ss_pred cEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhh
Q 030579 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (175)
Q Consensus 70 ~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (175)
.|.+++ +++|++||||||+++|+|+.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++...... ..
T Consensus 3 ~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~---~~ 76 (255)
T PRK09674 3 ELLVSR--QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNA-RFFAAGADLNEMAEKDLA---AT 76 (255)
T ss_pred eEEEEe--ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CceecccChHhHhccchh---hh
Confidence 467776 799999999999999999999999999999999999999999999999 899999999987542111 11
Q ss_pred hHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 150 GRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 150 ~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.......++.+|..+|||+||+|||+
T Consensus 77 ~~~~~~~~~~~l~~~~kPvIAav~G~ 102 (255)
T PRK09674 77 LNDPRPQLWQRLQAFNKPLIAAVNGY 102 (255)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 11223456778999999999999996
No 33
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=1.2e-22 Score=166.68 Aligned_cols=107 Identities=35% Similarity=0.521 Sum_probs=87.2
Q ss_pred CCcccEEEEEEeCC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCcc
Q 030579 66 TEFTDIIYEKAVGE-GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (175)
Q Consensus 66 ~~~~~v~~e~~~~~-~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~ 144 (175)
|.|+.|.++. ++ +|++|+||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.| ++||+|+|++++......
T Consensus 2 ~~~~~i~~~~--~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~ 78 (272)
T PRK06210 2 MAYDAVLYEV--ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAG-RGFCAGADMGELQTIDPS 78 (272)
T ss_pred CCcceEEEEE--CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCC-CCcccccCHHHHhccCcc
Confidence 5677889987 77 9999999999999999999999999999999999999999999999 899999999987542211
Q ss_pred ch------hhhhH---hhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 145 DY------ENFGR---LNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 145 ~~------~~~~~---~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.. ..+.. ..+++++.+|.++|||+||+|||+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 118 (272)
T PRK06210 79 DGRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGA 118 (272)
T ss_pred cccccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCe
Confidence 10 00111 123455678999999999999996
No 34
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=1e-22 Score=166.11 Aligned_cols=102 Identities=19% Similarity=0.230 Sum_probs=84.5
Q ss_pred cEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhh
Q 030579 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (175)
Q Consensus 70 ~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (175)
.+.++. +++|++||||||++ |+|+.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++..........
T Consensus 4 ~v~~~~--~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~- 79 (258)
T PRK09076 4 ELDLEI--DGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVARE- 79 (258)
T ss_pred EEEEEE--ECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHH-
Confidence 477777 79999999999986 99999999999999999999999999999999867899999999875422211111
Q ss_pred hHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 150 GRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 150 ~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
....+..++.+|.++|||+||+|||+
T Consensus 80 ~~~~~~~~~~~l~~~~kPvIAav~G~ 105 (258)
T PRK09076 80 MARRFGEAFEALSAFRGVSIAAINGY 105 (258)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 12234567788999999999999996
No 35
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=1.1e-22 Score=165.51 Aligned_cols=104 Identities=32% Similarity=0.490 Sum_probs=86.1
Q ss_pred ccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCc-cchh
Q 030579 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-ADYE 147 (175)
Q Consensus 69 ~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~-~~~~ 147 (175)
+++.++. +++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... ....
T Consensus 2 ~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 78 (255)
T PRK07260 2 EHIIYEV--EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANG-KVFSVGGDLVEMKRAVDEDDVQ 78 (255)
T ss_pred CceEEEE--ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccccCHHHHHhhccccchh
Confidence 4577877 789999999999999999999999999999999999999999999999 89999999998753211 1111
Q ss_pred h--hhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 148 N--FGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 148 ~--~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
. .....+++++.+|.++|||+||+|||+
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 108 (255)
T PRK07260 79 SLVKIAELVNEISFAIKQLPKPVIMCVDGA 108 (255)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCEEEEecCe
Confidence 1 112234667788999999999999996
No 36
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=1.6e-22 Score=165.15 Aligned_cols=106 Identities=25% Similarity=0.444 Sum_probs=87.0
Q ss_pred CCcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccc
Q 030579 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (175)
Q Consensus 66 ~~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~ 145 (175)
.+++.+.++. +++|++|+||||+++|+++.+|+.+|.++++.+ .|+++|+|||+|.| ++||+|+|++++.......
T Consensus 3 ~~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~~~~ 78 (260)
T PRK07659 3 SKMESVVVKY--EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNG-RGFSAGGDIKMMLSSNDES 78 (260)
T ss_pred CCCceEEEEe--eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCC-CCcccccCHHHHhhccCch
Confidence 3455688887 899999999999999999999999999999999 58899999999999 8999999999875432211
Q ss_pred hhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 146 YENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
........+++++.++.++|||+||+|||+
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~pvIaav~G~ 108 (260)
T PRK07659 79 KFDGVMNTISEIVVTLYTMPKLTISAIHGP 108 (260)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEecCc
Confidence 111122235677888999999999999996
No 37
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=1.3e-22 Score=165.90 Aligned_cols=105 Identities=30% Similarity=0.464 Sum_probs=83.6
Q ss_pred CcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccch
Q 030579 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (175)
Q Consensus 67 ~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~ 146 (175)
.++.+.+++ +++|++|+||||+++|+|+.+|+++|.++++.++.|+++|+|||+|.| ++||+|+|++++........
T Consensus 3 ~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~ 79 (263)
T PRK07799 3 GGPHALVEQ--RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAG-GAFCAGMDLKAATKKPPGDS 79 (263)
T ss_pred CCceEEEEE--ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccccCHHHHhhccccch
Confidence 345688887 799999999999999999999999999999999999999999999999 89999999998754321111
Q ss_pred -h-h-hhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 147 -E-N-FGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 147 -~-~-~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
. . .....+. .+.++..+|||+||+|||+
T Consensus 80 ~~~~~~~~~~~~-~~~~~~~~~kpvIaav~G~ 110 (263)
T PRK07799 80 FKDGSYDPSRID-ALLKGRRLTKPLIAAVEGP 110 (263)
T ss_pred hhhhhhhhhHHH-HHHHHhcCCCCEEEEECCe
Confidence 1 0 0011122 2345789999999999996
No 38
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=1.6e-22 Score=164.74 Aligned_cols=102 Identities=25% Similarity=0.308 Sum_probs=84.6
Q ss_pred cEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhh
Q 030579 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (175)
Q Consensus 70 ~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (175)
.+.+++ +++|++|+||||++ |+|+.+|+++|.++++.++.|+++|+|||+|.| ++||+|+|++++...........
T Consensus 3 ~i~~~~--~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 78 (257)
T PRK07658 3 FLSVRV--EDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEG-RFFSAGADIKEFTSVTEAEQATE 78 (257)
T ss_pred eEEEEe--eCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhccCchhhHHH
Confidence 577877 89999999999986 999999999999999999999999999999999 89999999998754322111111
Q ss_pred hHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 150 GRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 150 ~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
....+..++.+|.++|||+||+|||+
T Consensus 79 ~~~~~~~~~~~l~~~~kpvIAav~G~ 104 (257)
T PRK07658 79 LAQLGQVTFERVEKFSKPVIAAIHGA 104 (257)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCe
Confidence 12234567888999999999999996
No 39
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=1.9e-22 Score=164.57 Aligned_cols=106 Identities=30% Similarity=0.417 Sum_probs=86.9
Q ss_pred CcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCC-c-c
Q 030579 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG-Y-A 144 (175)
Q Consensus 67 ~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~-~-~ 144 (175)
....+.++. +++|++|+||||+++|+|+.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.... . .
T Consensus 4 ~~~~i~~~~--~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~ 80 (260)
T PRK07827 4 VDTLVRYAV--DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTG-GTFCAGADLSEAGGGGGDPY 80 (260)
T ss_pred CCcceEEEe--eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCcChHHHhhcccCch
Confidence 344577777 789999999999999999999999999999999999999999999999 8999999999875421 1 1
Q ss_pred chhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 145 DYENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 145 ~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.........+.+++.+|.++|||+||+|||+
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 111 (260)
T PRK07827 81 DAAVARAREMTALLRAIVELPKPVIAAIDGH 111 (260)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCEEEEEcCe
Confidence 1111112235667888999999999999996
No 40
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=99.89 E-value=1.9e-22 Score=165.93 Aligned_cols=97 Identities=31% Similarity=0.427 Sum_probs=80.3
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCcc----c----hh--
Q 030579 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA----D----YE-- 147 (175)
Q Consensus 78 ~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~----~----~~-- 147 (175)
+++|++|+||||+++|+|+.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++...... . ..
T Consensus 15 ~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 93 (275)
T PLN02664 15 NSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAG-DHFCSGIDLKTLNSISEQSSSGDRGRSGERL 93 (275)
T ss_pred CCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CceeeCcChHHhhhcccccccccchhhHHHH
Confidence 799999999999999999999999999999999999999999999999 899999999987532110 0 00
Q ss_pred hhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 148 NFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
......+++++.+|.++|||+||+|||+
T Consensus 94 ~~~~~~~~~~~~~l~~~~kPvIaav~G~ 121 (275)
T PLN02664 94 RRKIKFLQDAITAIEQCRKPVIAAIHGA 121 (275)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCc
Confidence 1111224567778999999999999996
No 41
>PLN02600 enoyl-CoA hydratase
Probab=99.89 E-value=1e-22 Score=165.54 Aligned_cols=97 Identities=25% Similarity=0.437 Sum_probs=81.2
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHH
Q 030579 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (175)
Q Consensus 78 ~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 157 (175)
+++|++||||||+++|+|+.+|+.+|.++++.++.|+++|+|||+|.++++||+|+|++++..........+ ...++.+
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~-~~~~~~~ 80 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKF-VNSLRST 80 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHH-HHHHHHH
Confidence 688999999999999999999999999999999999999999999985589999999998754322111112 2234667
Q ss_pred HHHHhcCCCcEEEEeeCC
Q 030579 158 QVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 158 ~~~i~~~~kPvIAaV~G~ 175 (175)
+.++.++|||+||+|||+
T Consensus 81 ~~~l~~~~kPvIAav~G~ 98 (251)
T PLN02600 81 FSSLEALSIPTIAVVEGA 98 (251)
T ss_pred HHHHHhCCCCEEEEecCe
Confidence 788999999999999996
No 42
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=99.88 E-value=1.4e-22 Score=164.40 Aligned_cols=98 Identities=31% Similarity=0.402 Sum_probs=83.1
Q ss_pred EEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhh
Q 030579 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (175)
Q Consensus 71 v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 150 (175)
|.++. +++|++|+||||+++|+|+.+|+.+|.++++.++.|+++|+|||+|.| +.||+|+|++++.... ... .
T Consensus 2 i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~---~~~-~ 74 (248)
T PRK06072 2 IKVES--REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEG-RAFCVGADLSEFAPDF---AID-L 74 (248)
T ss_pred eEEEE--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhhh---HHH-H
Confidence 45666 799999999999999999999999999999999999999999999999 8999999999765321 111 1
Q ss_pred HhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 151 RLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 151 ~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
...+..++..|..+|||+||+|||+
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~ 99 (248)
T PRK06072 75 RETFYPIIREIRFSDKIYISAINGV 99 (248)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCe
Confidence 2234567778999999999999996
No 43
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=99.88 E-value=2e-22 Score=167.44 Aligned_cols=106 Identities=38% Similarity=0.566 Sum_probs=86.2
Q ss_pred CcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccC-Cc--
Q 030579 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRD-GY-- 143 (175)
Q Consensus 67 ~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~-~~-- 143 (175)
.++.|.+++ +++|++|+||||+++|+|+.+|+.+|.++|+.++.|+++|+|||+|.| ++||+|+|++++... ..
T Consensus 2 ~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~ 78 (296)
T PRK08260 2 TYETIRYDV--ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAG-RAFCAGADLSAGGNTFDLDA 78 (296)
T ss_pred CcceEEEee--eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CCeecCcChHHhhhcccccc
Confidence 355688887 899999999999999999999999999999999999999999999999 899999999976421 00
Q ss_pred -------------cchhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 144 -------------ADYENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 144 -------------~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
..........+..++.+|..+|||+||+|||+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~ 123 (296)
T PRK08260 79 PRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGP 123 (296)
T ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 00011112223456778999999999999996
No 44
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=99.88 E-value=2.7e-22 Score=165.24 Aligned_cols=106 Identities=31% Similarity=0.404 Sum_probs=86.7
Q ss_pred CcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCC---c
Q 030579 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG---Y 143 (175)
Q Consensus 67 ~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~---~ 143 (175)
.-+.+.++. +++|++|+||||+++|+|+.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.... .
T Consensus 15 ~~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~~~~ 91 (277)
T PRK08258 15 EARHFLWEV--DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAG-GNFCSGGDVHEIIGPLTKMD 91 (277)
T ss_pred cccceEEEE--ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCC-CCcccccCHHHHhccccccC
Confidence 334688887 899999999999999999999999999999999999999999999999 8999999999874311 1
Q ss_pred cchhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 144 ADYENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 144 ~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
..........+.+++.+|.++|||+||+|||+
T Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~ 123 (277)
T PRK08258 92 MPELLAFTRMTGDLVKAMRACPQPIIAAVDGV 123 (277)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 11111122224567888999999999999996
No 45
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=99.88 E-value=2.2e-22 Score=164.30 Aligned_cols=104 Identities=29% Similarity=0.415 Sum_probs=84.8
Q ss_pred ccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhh
Q 030579 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (175)
Q Consensus 69 ~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (175)
+.+.+++ +++|++|+||||+++|+|+.+|+++|.++++.++.|+++|+|||+|.| ++||+|+|++++..........
T Consensus 3 ~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 79 (262)
T PRK07509 3 DRVSVTI--EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEG-GAFCAGLDVKSVASSPGNAVKL 79 (262)
T ss_pred ceEEEEe--eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCcCCCcCHHHHhcccchhhhh
Confidence 4678887 899999999999999999999999999999999999999999999999 8999999999875422111111
Q ss_pred hh------HhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 149 FG------RLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 149 ~~------~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.. ...+..++.++.++|||+||+|||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~ 112 (262)
T PRK07509 80 LFKRLPGNANLAQRVSLGWRRLPVPVIAALEGV 112 (262)
T ss_pred HhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 11 1123455667889999999999996
No 46
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.88 E-value=6.2e-23 Score=165.85 Aligned_cols=94 Identities=44% Similarity=0.596 Sum_probs=80.6
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHH
Q 030579 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (175)
Q Consensus 78 ~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 157 (175)
+++|+.|+||||+++|+|+..|+.||.++|..+++|+.++++||||.| ++||+|+||+++......+...... ...
T Consensus 44 d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~g-ksFcsG~Dl~e~~~~~~~~~~~~~~---~~~ 119 (290)
T KOG1680|consen 44 DNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSG-KSFCSGADLKEMKKDEFQDVSDGIF---LRV 119 (290)
T ss_pred CCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCC-CccccccCHHHHhhccccccccccc---cch
Confidence 899999999999999999999999999999999999999999999999 9999999999988765554322221 222
Q ss_pred HHHHhcCCCcEEEEeeCC
Q 030579 158 QVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 158 ~~~i~~~~kPvIAaV~G~ 175 (175)
+..+.+++||+||+||||
T Consensus 120 ~~~~~~~~KPvIaainG~ 137 (290)
T KOG1680|consen 120 WDLVSRLKKPVIAAINGF 137 (290)
T ss_pred hhhhhhcccceeEeeece
Confidence 444558999999999996
No 47
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=99.88 E-value=2.9e-22 Score=163.68 Aligned_cols=103 Identities=28% Similarity=0.429 Sum_probs=85.7
Q ss_pred cccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchh
Q 030579 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (175)
Q Consensus 68 ~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (175)
-+.+.++.. +++|++|+||||+++|+||.+|+.+|.++++.+++|+++|+|||+|.| ++||+|+|++++..... ..
T Consensus 6 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~--~~ 81 (261)
T PRK08138 6 TDVVLLERP-ADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGE-KVFAAGADIKEFATAGA--IE 81 (261)
T ss_pred CCCEEEEEc-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CCeeCCcCHHHHhccch--hH
Confidence 345777764 789999999999999999999999999999999999999999999998 89999999998754221 11
Q ss_pred hhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 148 NFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.....+.+++.++.++|||+||+|||+
T Consensus 82 -~~~~~~~~~~~~l~~~~kPvIaav~G~ 108 (261)
T PRK08138 82 -MYLRHTERYWEAIAQCPKPVIAAVNGY 108 (261)
T ss_pred -HHHHHHHHHHHHHHhCCCCEEEEEccE
Confidence 112234567788999999999999996
No 48
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=99.88 E-value=2.4e-22 Score=164.26 Aligned_cols=105 Identities=26% Similarity=0.346 Sum_probs=86.0
Q ss_pred CCcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCC-CCcccCCCCCCccccCCcc
Q 030579 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG-TEAFCSGGDQALRTRDGYA 144 (175)
Q Consensus 66 ~~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g-~~~FcaG~Dl~~~~~~~~~ 144 (175)
|.++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+ +|+|||+|.| +++||+|+|++++......
T Consensus 1 ~~~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~ 77 (261)
T PRK11423 1 MSMQYVNVVT--INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRD 77 (261)
T ss_pred CCccceEEEe--ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcccc
Confidence 3566788887 8999999999999999999999999999999999887 9999999963 4899999999986432111
Q ss_pred chhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 145 DYENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 145 ~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
... ....+.+++.+|..+|||+||+|||+
T Consensus 78 -~~~-~~~~~~~l~~~i~~~~kPvIaav~G~ 106 (261)
T PRK11423 78 -PLS-YDDPLRQILRMIQKFPKPVIAMVEGS 106 (261)
T ss_pred -HHH-HHHHHHHHHHHHHhCCCCEEEEEecE
Confidence 111 12234567888999999999999996
No 49
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=99.88 E-value=2.4e-22 Score=163.36 Aligned_cols=101 Identities=22% Similarity=0.399 Sum_probs=83.6
Q ss_pred cEEEEEEeCC---CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccch
Q 030579 70 DIIYEKAVGE---GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (175)
Q Consensus 70 ~v~~e~~~~~---~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~ 146 (175)
.|.+++ ++ +|++|+||||+++|+|+.+|+++|.++++.+++|+++|+|||+|.| ++||+|+|++++.......
T Consensus 4 ~i~~~~--~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~- 79 (251)
T PRK06023 4 HILVER--PGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTE-GCFSAGNDMQDFLAAAMGG- 79 (251)
T ss_pred eEEEEe--ecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcCHHHHhhccccc-
Confidence 477777 44 5999999999999999999999999999999999999999999999 8999999999765421111
Q ss_pred hhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 147 ENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
..+ ...+++++.+|.++|||+||+|||+
T Consensus 80 ~~~-~~~~~~~~~~l~~~~kPvIAav~G~ 107 (251)
T PRK06023 80 TSF-GSEILDFLIALAEAEKPIVSGVDGL 107 (251)
T ss_pred hhh-HHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 111 1234567788999999999999996
No 50
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=99.88 E-value=3.2e-22 Score=162.97 Aligned_cols=102 Identities=37% Similarity=0.547 Sum_probs=86.9
Q ss_pred ccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhh
Q 030579 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (175)
Q Consensus 69 ~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (175)
+.+.+++ +++|++|+||||++.|+|+.+|+++|.++++.++.|+++++|||+|.| ++||+|+|++++....... ..
T Consensus 5 ~~i~~~~--~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~-~~ 80 (259)
T PRK06688 5 TDLLVEL--EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAG-RAFSAGGDIKDFPKAPPKP-PD 80 (259)
T ss_pred CceEEEE--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCccCHHHHhccCcch-HH
Confidence 4578887 789999999999999999999999999999999999999999999999 8999999999875432221 11
Q ss_pred hhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 149 FGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 149 ~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
....+++++.+|.++|||+||+|||+
T Consensus 81 -~~~~~~~~~~~l~~~~kp~Iaav~G~ 106 (259)
T PRK06688 81 -ELAPVNRFLRAIAALPKPVVAAVNGP 106 (259)
T ss_pred -HHHHHHHHHHHHHcCCCCEEEEECCe
Confidence 22235677888999999999999996
No 51
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=99.88 E-value=2.4e-22 Score=164.01 Aligned_cols=103 Identities=28% Similarity=0.344 Sum_probs=83.1
Q ss_pred CcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccch
Q 030579 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (175)
Q Consensus 67 ~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~ 146 (175)
.++.+.++. +++|++|+||||+++|+|+.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++........
T Consensus 2 ~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~ 79 (259)
T PRK06494 2 ALPFSTVER--KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGW 79 (259)
T ss_pred CCceeEEEe--ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchh
Confidence 456788887 799999999999999999999999999999999999999999999998679999999997653221111
Q ss_pred hhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 147 ENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
. ...+..+ ..+.+||||+||+|||+
T Consensus 80 ~---~~~~~~~-~~~~~~~kPvIaav~G~ 104 (259)
T PRK06494 80 P---ESGFGGL-TSRFDLDKPIIAAVNGV 104 (259)
T ss_pred h---hHHHHHH-HHHhcCCCCEEEEECCE
Confidence 0 1112222 34568999999999996
No 52
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=99.88 E-value=2.7e-22 Score=164.19 Aligned_cols=103 Identities=33% Similarity=0.446 Sum_probs=84.2
Q ss_pred cEEEEEEeCCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCc-----
Q 030579 70 DIIYEKAVGEGIAKITINRPDRRNAFRP-HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY----- 143 (175)
Q Consensus 70 ~v~~e~~~~~~V~~ItLnrp~~~Nal~~-~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~----- 143 (175)
.+.+++ +++|++||||||+++|+|+. +|+++|.++++.++.|+++|+|||+|.| ++||+|+|++++.....
T Consensus 4 ~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (266)
T PRK09245 4 FLLVER--DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAG-TAFSSGGNVKDMRARVGAFGGS 80 (266)
T ss_pred ceEEEE--ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCHHHHhhcccccccc
Confidence 477877 79999999999999999995 9999999999999999999999999999 89999999998753211
Q ss_pred c-chhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 144 A-DYENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 144 ~-~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
. .........+..++.++.++|||+||+|||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~ 113 (266)
T PRK09245 81 PADIRQGYRHGIQRIPLALYNLEVPVIAAVNGP 113 (266)
T ss_pred chhHHHHHHHHHHHHHHHHHcCCCCEEEEECCE
Confidence 0 1111122223566778999999999999996
No 53
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=99.88 E-value=2.5e-22 Score=163.62 Aligned_cols=100 Identities=28% Similarity=0.391 Sum_probs=82.8
Q ss_pred cEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhh
Q 030579 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (175)
Q Consensus 70 ~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (175)
.|.++. +++|++|+||||+++|+||.+|+.+|.++++.++ +++|+|||||.| ++||+|+|++++...........
T Consensus 3 ~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g-~~F~aG~Dl~~~~~~~~~~~~~~ 77 (255)
T PRK08150 3 LVSYEL--DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEG-DHFCAGLDLSELRERDAGEGMHH 77 (255)
T ss_pred eEEEEe--eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCC-CceecCcCHHHHhhccchhHHHH
Confidence 467777 7899999999999999999999999999999997 789999999999 89999999998754322111111
Q ss_pred hHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 150 GRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 150 ~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
...++.++.+|.++|||+||+|||+
T Consensus 78 -~~~~~~~~~~l~~~~kPvIaav~G~ 102 (255)
T PRK08150 78 -SRRWHRVFDKIQYGRVPVIAALHGA 102 (255)
T ss_pred -HHHHHHHHHHHHhCCCCEEEEECCE
Confidence 2234667788999999999999996
No 54
>PRK05869 enoyl-CoA hydratase; Validated
Probab=99.88 E-value=2e-22 Score=161.25 Aligned_cols=95 Identities=22% Similarity=0.330 Sum_probs=80.3
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHH
Q 030579 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (175)
Q Consensus 78 ~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 157 (175)
+++|++|+||||++ |+|+.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.......... ....++++
T Consensus 15 ~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~~~-~~~~~~~~ 91 (222)
T PRK05869 15 DAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGH-EIFSAGDDMPELRTLSAQEADT-AARVRQQA 91 (222)
T ss_pred cCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcCcCcCHHHHhccChhhHHH-HHHHHHHH
Confidence 58899999999985 999999999999999999999999999999998 8999999999875432222111 12234678
Q ss_pred HHHHhcCCCcEEEEeeCC
Q 030579 158 QVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 158 ~~~i~~~~kPvIAaV~G~ 175 (175)
+.+|.++|||+||+|||+
T Consensus 92 ~~~i~~~~kPvIAav~G~ 109 (222)
T PRK05869 92 VDAVAAIPKPTVAAITGY 109 (222)
T ss_pred HHHHHhCCCCEEEEEcCE
Confidence 889999999999999996
No 55
>PRK08321 naphthoate synthase; Validated
Probab=99.88 E-value=4.7e-22 Score=165.72 Aligned_cols=120 Identities=52% Similarity=0.860 Sum_probs=91.8
Q ss_pred ccchhhhhccCCCCCcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCC------
Q 030579 53 HDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT------ 126 (175)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~------ 126 (175)
.++.|.... ...+..+.++++.+++|++||||||+++|+|+.+|+.+|.++++.++.|+++++|||+|.|+
T Consensus 10 ~~~~~~~~~---~~~~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~ 86 (302)
T PRK08321 10 DPDLWRPVP---GFDFTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGG 86 (302)
T ss_pred CcccccCcC---CCCceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCC
Confidence 477886432 23577788887556889999999999999999999999999999999999999999999983
Q ss_pred CcccCCCCCCccccCCc-----c--c-hh--hhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 127 EAFCSGGDQALRTRDGY-----A--D-YE--NFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 127 ~~FcaG~Dl~~~~~~~~-----~--~-~~--~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
++||+|+|++++..... . . .. ........++...+..+|||+||+|||+
T Consensus 87 ~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~ 145 (302)
T PRK08321 87 WAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGW 145 (302)
T ss_pred CeeecCcChhhhccccccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCe
Confidence 59999999987532110 0 0 00 1111112345667889999999999996
No 56
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=99.88 E-value=2.7e-22 Score=163.38 Aligned_cols=101 Identities=31% Similarity=0.462 Sum_probs=81.9
Q ss_pred EEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCcc--chhh
Q 030579 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA--DYEN 148 (175)
Q Consensus 71 v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~--~~~~ 148 (175)
|.+++ +++|++||||||+++|+|+.+|+.+|.++++.++.|+ +|+|||+|.| ++||+|+|++++...... ....
T Consensus 1 ~~~e~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~ 76 (256)
T TIGR02280 1 ILSAL--EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAG-RGFCAGQDLSERNPTPGGAPDLGR 76 (256)
T ss_pred CeEEE--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCC-CCcccCcCHHHHhhccccchhHHH
Confidence 35666 7999999999999999999999999999999999998 9999999999 899999999987542211 1111
Q ss_pred hhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 149 FGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 149 ~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.....+..++.++..+|||+||+|||+
T Consensus 77 ~~~~~~~~~~~~l~~~~kPvIaav~G~ 103 (256)
T TIGR02280 77 TIETFYNPLVRRLRALPLPVVCAVNGV 103 (256)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 111223456778999999999999996
No 57
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=99.88 E-value=3.9e-22 Score=162.71 Aligned_cols=103 Identities=29% Similarity=0.452 Sum_probs=85.5
Q ss_pred cEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCC--ccchh
Q 030579 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG--YADYE 147 (175)
Q Consensus 70 ~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~--~~~~~ 147 (175)
.+.++. +++|++|+||||+++|+|+.+|+.+|.++++.++.|+++|+|||+|.| +.||+|+|++++.... .....
T Consensus 4 ~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (260)
T PRK07511 4 ELLSRR--EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAG-GFFCAGGNLNRLLENRAKPPSVQ 80 (260)
T ss_pred eeEEEe--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCC-CCcccCcCHHHHhhcccccchhH
Confidence 367776 899999999999999999999999999999999999999999999999 8999999999875421 11111
Q ss_pred hhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 148 NFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
......+++++.++.++|||+||+|||+
T Consensus 81 ~~~~~~~~~~~~~l~~~~kpvIAav~G~ 108 (260)
T PRK07511 81 AASIDGLHDWIRAIRAFPKPVIAAVEGA 108 (260)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCe
Confidence 1122235677888999999999999996
No 58
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.88 E-value=3.6e-22 Score=171.76 Aligned_cols=103 Identities=22% Similarity=0.388 Sum_probs=84.8
Q ss_pred ccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCc-c--c
Q 030579 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-A--D 145 (175)
Q Consensus 69 ~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~-~--~ 145 (175)
..|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... . .
T Consensus 37 ~~V~~e~--~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~G-kaFcAGgDl~~l~~~~~~~~~~ 113 (401)
T PLN02157 37 YQVLVEG--SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSG-RAFCAGGDIVSLYHLRKRGSPD 113 (401)
T ss_pred CceEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCccCCcCHHHHHhhccccchH
Confidence 3577887 799999999999999999999999999999999999999999999999 89999999998753211 1 1
Q ss_pred -hhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 146 -YENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 146 -~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
...++. ..+.+..+|.++|||+||+|||+
T Consensus 114 ~~~~~~~-~~~~l~~~i~~~pkPvIA~v~G~ 143 (401)
T PLN02157 114 AIREFFS-SLYSFIYLLGTYLKPHVAILNGV 143 (401)
T ss_pred HHHHHHH-HHHHHHHHHHhCCCCEEEEEeCe
Confidence 111221 23446678999999999999995
No 59
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=99.88 E-value=3.9e-22 Score=162.00 Aligned_cols=96 Identities=24% Similarity=0.207 Sum_probs=79.2
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHH
Q 030579 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (175)
Q Consensus 78 ~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 157 (175)
+++|++|+||||++ |+|+.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++...............+..+
T Consensus 9 ~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 86 (249)
T PRK07938 9 EPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEG-RGFNAGVDIKELQATPGFTALIDANRGCFAA 86 (249)
T ss_pred CCCEEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCC-CceecCcCHHHHhhccchhHHHHHHHHHHHH
Confidence 78999999999975 999999999999999999999999999999999 8999999999865422111111111224567
Q ss_pred HHHHhcCCCcEEEEeeCC
Q 030579 158 QVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 158 ~~~i~~~~kPvIAaV~G~ 175 (175)
+.+|.++|||+||+|||+
T Consensus 87 ~~~i~~~~kPvIAav~G~ 104 (249)
T PRK07938 87 FRAVYECAVPVIAAVHGF 104 (249)
T ss_pred HHHHHhCCCCEEEEEcCE
Confidence 778999999999999996
No 60
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.87 E-value=6.6e-22 Score=160.62 Aligned_cols=102 Identities=27% Similarity=0.275 Sum_probs=86.1
Q ss_pred CcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccch
Q 030579 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (175)
Q Consensus 67 ~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~ 146 (175)
-+..+.++. +++|++|+||||++.|+|+.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++.......
T Consensus 3 ~~~~~~~~~--~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~- 78 (249)
T PRK07110 3 MKVVELREV--EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYP-NYFATGGTQEGLLSLQTGK- 78 (249)
T ss_pred CCceEEEEe--eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCeeCCcChHHHhhccchh-
Confidence 456677877 899999999999999999999999999999999999999999999999 8999999999775432211
Q ss_pred hhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 147 ENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.. +.. .+++.++.++|||+||+|||+
T Consensus 79 ~~-~~~--~~~~~~l~~~~kPvIaav~G~ 104 (249)
T PRK07110 79 GT-FTE--ANLYSLALNCPIPVIAAMQGH 104 (249)
T ss_pred hh-Hhh--HHHHHHHHcCCCCEEEEecCc
Confidence 11 111 467788999999999999996
No 61
>PLN02888 enoyl-CoA hydratase
Probab=99.87 E-value=7.1e-22 Score=161.85 Aligned_cols=103 Identities=39% Similarity=0.456 Sum_probs=84.2
Q ss_pred CcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccch
Q 030579 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (175)
Q Consensus 67 ~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~ 146 (175)
..+.|.++.. +++|++|+||||+++|+|+.+|+.+|.++|+.++.|+++|+|||+|.| ++||+|+|++++........
T Consensus 7 ~~~~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~ 84 (265)
T PLN02888 7 SENLILVPKS-RNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSG-RAFCSGVDLTAAEEVFKGDV 84 (265)
T ss_pred CCCeEEEEec-cCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CcccCCCCHHHHHhhccchh
Confidence 3456777753 689999999999999999999999999999999999999999999999 89999999987643111111
Q ss_pred hhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 147 ENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
. ....+++..|.++|||+||+|||+
T Consensus 85 ~----~~~~~~~~~i~~~~kPvIaav~G~ 109 (265)
T PLN02888 85 K----DVETDPVAQMERCRKPIIGAINGF 109 (265)
T ss_pred h----HHHHHHHHHHHhCCCCEEEEECCe
Confidence 1 112455667899999999999996
No 62
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.87 E-value=5.3e-22 Score=170.03 Aligned_cols=107 Identities=26% Similarity=0.270 Sum_probs=86.8
Q ss_pred CCcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCc-c
Q 030579 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-A 144 (175)
Q Consensus 66 ~~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~-~ 144 (175)
+.+..+.++. +++|++|+||||+++|+|+.+|+.+|.++++.++.|++||+|||+|.| ++||+|+|++++..... .
T Consensus 8 ~~~~~v~~~~--~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~~~ 84 (379)
T PLN02874 8 PAEEVVLGEE--KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAG-RAFSAGGDLKMFYDGRESD 84 (379)
T ss_pred CCCCceEEEE--ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCccCHHHHHhhcccc
Confidence 4556788887 799999999999999999999999999999999999999999999999 89999999998743211 1
Q ss_pred chhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 145 DYENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 145 ~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.........++.+..+|.+++||+||+|||+
T Consensus 85 ~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~ 115 (379)
T PLN02874 85 DSCLEVVYRMYWLCYHIHTYKKTQVALVHGL 115 (379)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCEEEEecCe
Confidence 1111111123455678899999999999996
No 63
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.87 E-value=8.3e-22 Score=160.54 Aligned_cols=104 Identities=18% Similarity=0.303 Sum_probs=84.3
Q ss_pred CcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccch
Q 030579 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (175)
Q Consensus 67 ~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~ 146 (175)
+|+.+.++. +++|++|+||||+++|+|+.+|+.+|.++++.++ +++|+|||+|.| ++||+|+|++++........
T Consensus 2 ~~~~i~~~~--~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g-~~FsaG~Dl~~~~~~~~~~~ 76 (255)
T PRK07112 2 DYQTIRVRQ--QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLP-EVFCFGADFSAIAEKPDAGR 76 (255)
T ss_pred CCceEEEEe--eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCC-CCcccCcCHHHHhhccccch
Confidence 456788887 8999999999999999999999999999999998 369999999999 89999999998754211111
Q ss_pred h-hhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 147 E-NFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 147 ~-~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
. ......+..++.+|.++|||+||+|||+
T Consensus 77 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 106 (255)
T PRK07112 77 ADLIDAEPLYDLWHRLATGPYVTIAHVRGK 106 (255)
T ss_pred hhhhhHHHHHHHHHHHHcCCCCEEEEEecE
Confidence 1 1112223567788999999999999996
No 64
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=99.87 E-value=6.9e-22 Score=167.29 Aligned_cols=103 Identities=29% Similarity=0.485 Sum_probs=85.2
Q ss_pred cEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCc---cch
Q 030579 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY---ADY 146 (175)
Q Consensus 70 ~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~---~~~ 146 (175)
.+.+++ +++|++|+||||+++|+|+.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++..... ...
T Consensus 4 ~v~~~~--~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (342)
T PRK05617 4 EVLAEV--EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLA 81 (342)
T ss_pred eEEEEE--ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchh
Confidence 477877 799999999999999999999999999999999999999999999998789999999998643211 111
Q ss_pred h-hhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 147 E-NFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 147 ~-~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
. .... ...+++.++.+++||+||+|||+
T Consensus 82 ~~~~~~-~~~~~~~~i~~~~kPvIAaVnG~ 110 (342)
T PRK05617 82 ADRFFR-EEYRLNALIARYPKPYIALMDGI 110 (342)
T ss_pred HHHHHH-HHHHHHHHHHhCCCCEEEEEcCE
Confidence 1 1121 23467778999999999999996
No 65
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=99.87 E-value=1.6e-21 Score=158.57 Aligned_cols=97 Identities=19% Similarity=0.349 Sum_probs=81.2
Q ss_pred EEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhh
Q 030579 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (175)
Q Consensus 71 v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 150 (175)
|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|+.++... .....
T Consensus 3 v~~~~--~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g-~~FcaG~Dl~~~~~~---~~~~~- 74 (251)
T TIGR03189 3 VWLER--DGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEG-PHFSFGASVAEHMPD---QCAAM- 74 (251)
T ss_pred EEEEe--eCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCC-CceecCcChhhhCch---hHHHH-
Confidence 66776 7899999999997 5999999999999999999999999999999999 899999999875321 11111
Q ss_pred HhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 151 RLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 151 ~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
...+.+++.++.++|||+||+|||+
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~ 99 (251)
T TIGR03189 75 LASLHKLVIAMLDSPVPILVAVRGQ 99 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCe
Confidence 1224567788999999999999996
No 66
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=99.87 E-value=8.9e-22 Score=160.30 Aligned_cols=100 Identities=28% Similarity=0.357 Sum_probs=79.5
Q ss_pred cEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhh
Q 030579 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (175)
Q Consensus 70 ~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (175)
.+.++. +++|++|+||||+++|+|+.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..........
T Consensus 4 ~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g-~~FcaG~Dl~~~~~~~~~~~~~- 79 (254)
T PRK08259 4 SVRVER--NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAG-GTFCAGADLKAVGTGRGNRLHP- 79 (254)
T ss_pred eEEEEE--ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCCcChHHHhcccchhhhh-
Confidence 477877 799999999999999999999999999999999999999999999999 8999999999875422111110
Q ss_pred hHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 150 GRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 150 ~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.. ...+...+.++|||+||+|||+
T Consensus 80 ~~--~~~~~~~~~~~~kPvIaav~G~ 103 (254)
T PRK08259 80 SG--DGPMGPSRMRLSKPVIAAVSGY 103 (254)
T ss_pred hh--cchhhhHHhcCCCCEEEEECCE
Confidence 00 0111223347999999999996
No 67
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=99.86 E-value=1.6e-21 Score=159.26 Aligned_cols=101 Identities=31% Similarity=0.397 Sum_probs=82.2
Q ss_pred cEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhh
Q 030579 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (175)
Q Consensus 70 ~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (175)
.+.++. +++|++|+||||+ .|+|+.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++........ ..
T Consensus 4 ~i~~~~--~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~-~~ 79 (261)
T PRK03580 4 SLHTTR--NGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDA-DF 79 (261)
T ss_pred eEEEEE--ECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchh-hh
Confidence 377777 7999999999995 5999999999999999999999999999999998679999999998754322111 11
Q ss_pred hHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 150 GRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 150 ~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.. .....+.++..+|||+||+|||+
T Consensus 80 ~~-~~~~~~~~l~~~~kPvIaav~G~ 104 (261)
T PRK03580 80 GP-GGFAGLTEIFDLDKPVIAAVNGY 104 (261)
T ss_pred hh-hhhHHHHHHHhCCCCEEEEECCe
Confidence 11 12345678899999999999996
No 68
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=99.86 E-value=1.7e-21 Score=166.79 Aligned_cols=104 Identities=29% Similarity=0.446 Sum_probs=84.5
Q ss_pred cccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCc-cc-
Q 030579 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-AD- 145 (175)
Q Consensus 68 ~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~-~~- 145 (175)
...|.++. +++|++|+||||+++|+|+.+|+.+|.++|+.++.|+++++|||+|.| ++||+|+|++++..... ..
T Consensus 8 ~~~v~~~~--~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G-~~FcAGgDl~~l~~~~~~~~~ 84 (381)
T PLN02988 8 QSQVLVEE--KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHG-RAFCAGGDVAAVVRDIEQGNW 84 (381)
T ss_pred CCceEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCC-CCcccCcCHHHHHhhhcccch
Confidence 34588877 799999999999999999999999999999999999999999999999 89999999998753211 11
Q ss_pred --hhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 146 --YENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 146 --~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
...++.. .+.+...|.++|||+||+|||+
T Consensus 85 ~~~~~~f~~-~~~l~~~i~~~pKPvIa~v~G~ 115 (381)
T PLN02988 85 RLGANFFSD-EYMLNYVMATYSKAQVSILNGI 115 (381)
T ss_pred hHHHHHHHH-HHHHHHHHHHCCCCEEEEecCe
Confidence 1111221 2345567899999999999995
No 69
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=99.86 E-value=2.2e-21 Score=157.89 Aligned_cols=98 Identities=32% Similarity=0.425 Sum_probs=79.3
Q ss_pred cEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhh
Q 030579 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (175)
Q Consensus 70 ~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (175)
.+.+++ +++|++|+||||+++|+|+.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++....... .
T Consensus 4 ~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~---~ 77 (254)
T PRK08252 4 EVLVER--RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAG-GTFCAGMDLKAFARGERPS---I 77 (254)
T ss_pred eEEEEE--ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CceEcCcCHHHHhcccchh---h
Confidence 477877 799999999999999999999999999999999999999999999999 8999999999875422111 1
Q ss_pred hHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 150 GRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 150 ~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
....+..+. ...+|||+||+|||+
T Consensus 78 ~~~~~~~~~--~~~~~kPvIaav~G~ 101 (254)
T PRK08252 78 PGRGFGGLT--ERPPRKPLIAAVEGY 101 (254)
T ss_pred hHHHHHHHH--HhcCCCCEEEEECCE
Confidence 111112222 247999999999996
No 70
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=99.86 E-value=3.6e-21 Score=155.84 Aligned_cols=95 Identities=32% Similarity=0.505 Sum_probs=79.3
Q ss_pred EEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhh
Q 030579 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (175)
Q Consensus 71 v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 150 (175)
+.++. +++|++||||||+++|+||.+|+.+|.++++.++++ ++|+|||+|.| +.||+|+|+++... ... .
T Consensus 2 ~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g-~~F~aG~Dl~~~~~-----~~~-~ 71 (243)
T PRK07854 2 IGVTR--DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQG-TVFCAGADLSGDVY-----ADD-F 71 (243)
T ss_pred ceEEE--eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCC-CceecccCCccchh-----HHH-H
Confidence 45666 789999999999999999999999999999999865 89999999999 89999999985211 111 1
Q ss_pred HhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 151 RLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 151 ~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
...+..++.+|.++|||+||+|||+
T Consensus 72 ~~~~~~~~~~l~~~~kP~Iaav~G~ 96 (243)
T PRK07854 72 PDALIEMLHAIDAAPVPVIAAINGP 96 (243)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCc
Confidence 1224567788999999999999996
No 71
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=99.85 E-value=7.5e-22 Score=155.85 Aligned_cols=109 Identities=28% Similarity=0.355 Sum_probs=85.9
Q ss_pred CCcccEEEEE-EeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccC---
Q 030579 66 TEFTDIIYEK-AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRD--- 141 (175)
Q Consensus 66 ~~~~~v~~e~-~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~--- 141 (175)
..|+.+.+.. ..+.-|.++.||||.|+|+|+..||.|+.++|+.+.+||++++|||.|+| |.||+|.|+..+...
T Consensus 16 ~s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~G-KhFcaGIDl~~~~~~~~~ 94 (292)
T KOG1681|consen 16 HSYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAG-KHFCAGIDLNDMASDRIL 94 (292)
T ss_pred cccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCC-cceecccCcchhhhhhcc
Confidence 3455444431 13677999999999999999999999999999999999999999999999 999999998754322
Q ss_pred ---Cccch-----hhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 142 ---GYADY-----ENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 142 ---~~~~~-----~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
+.... .......+|+.+..|.+||||+||+|||+
T Consensus 95 ~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~ 136 (292)
T KOG1681|consen 95 QPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGA 136 (292)
T ss_pred ccccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhh
Confidence 11111 11223346888999999999999999985
No 72
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=99.85 E-value=1.5e-21 Score=157.70 Aligned_cols=99 Identities=34% Similarity=0.572 Sum_probs=85.5
Q ss_pred EEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHh
Q 030579 73 YEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRL 152 (175)
Q Consensus 73 ~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 152 (175)
++. +++|++|+||||++.|+||.+|+.+|.++|+.++.|+++|+||++|.+ +.||+|+|++++... ..........
T Consensus 2 ~~~--~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~-~~F~~G~Dl~~~~~~-~~~~~~~~~~ 77 (245)
T PF00378_consen 2 YEI--EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGG-KAFCAGADLKEFLNS-DEEEAREFFR 77 (245)
T ss_dssp EEE--ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEEST-SESBESB-HHHHHHH-HHHHHHHHHH
T ss_pred EEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecc-cccccccchhhhhcc-ccccccccch
Confidence 555 899999999999999999999999999999999999999999999998 899999999988765 2222233344
Q ss_pred hHHHHHHHHhcCCCcEEEEeeCC
Q 030579 153 NVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 153 ~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.++.++.++..+|||+||+|||+
T Consensus 78 ~~~~l~~~l~~~~kp~Iaav~G~ 100 (245)
T PF00378_consen 78 RFQELLSRLANFPKPTIAAVNGH 100 (245)
T ss_dssp HHHHHHHHHHHSSSEEEEEESSE
T ss_pred hhccccccchhhhhheeeccccc
Confidence 57889999999999999999995
No 73
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=99.85 E-value=1.4e-20 Score=155.29 Aligned_cols=106 Identities=14% Similarity=0.120 Sum_probs=83.5
Q ss_pred cccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCC-CcccCCCCCCccccCCccc-
Q 030579 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT-EAFCSGGDQALRTRDGYAD- 145 (175)
Q Consensus 68 ~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~-~~FcaG~Dl~~~~~~~~~~- 145 (175)
.+.|.++.. +++|++||||||+ .|+|+.+|+.+|.++++.+++|+++|+|||||.|+ ++||+|+|++++.......
T Consensus 10 ~~~i~~~~~-~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~ 87 (278)
T PLN03214 10 TPGVRVDRR-PGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAA 87 (278)
T ss_pred CCceEEEEc-CCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchH
Confidence 346888763 5889999999985 69999999999999999999999999999999873 6999999999865321111
Q ss_pred hhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 146 YENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
...........++.+|.++|||+||+|||+
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~ 117 (278)
T PLN03214 88 RYAEFWLTQTTFLVRLLRSRLATVCAIRGA 117 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCc
Confidence 111111123456778999999999999996
No 74
>PRK08788 enoyl-CoA hydratase; Validated
Probab=99.84 E-value=2.1e-20 Score=154.83 Aligned_cols=110 Identities=15% Similarity=0.129 Sum_probs=81.1
Q ss_pred CCCcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhc-----CCCceEEEEecCCCCcccCCCCCCccc
Q 030579 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARD-----DSSVGVIILTGKGTEAFCSGGDQALRT 139 (175)
Q Consensus 65 ~~~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~-----d~~vkvvVltG~g~~~FcaG~Dl~~~~ 139 (175)
..+++.++++.+.+++|++|+|| |+++|+|+.+|+.+|.+++++++. |+++|+|||+|.+++.||+|+|++++.
T Consensus 11 ~~~~~~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~ 89 (287)
T PRK08788 11 AGELSQLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFA 89 (287)
T ss_pred ccccCceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHh
Confidence 34556666655558999999995 999999999999999999999998 899999999999338999999999864
Q ss_pred cCC-ccchhhh--hHhhHHHHHHHHh---cCCCcEEEEeeCC
Q 030579 140 RDG-YADYENF--GRLNVLDLQVQIR---RLPKPVIAMVHLP 175 (175)
Q Consensus 140 ~~~-~~~~~~~--~~~~~~~~~~~i~---~~~kPvIAaV~G~ 175 (175)
... ....... ....+.+.+.++. .+|||+||+|||+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~ 131 (287)
T PRK08788 90 ELIRAGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGD 131 (287)
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCe
Confidence 311 1111111 1111223333333 7999999999996
No 75
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=99.84 E-value=1.7e-20 Score=151.62 Aligned_cols=101 Identities=22% Similarity=0.308 Sum_probs=80.5
Q ss_pred EEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCce-EEEEecCCCCcccCCCCCCccccCCc-cchhh
Q 030579 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVG-VIILTGKGTEAFCSGGDQALRTRDGY-ADYEN 148 (175)
Q Consensus 71 v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vk-vvVltG~g~~~FcaG~Dl~~~~~~~~-~~~~~ 148 (175)
+.++. +++|++|+||||++ |+|+.+|+.+|.++++.++.|++++ +||++|.| +.||+|+|++++..... .....
T Consensus 2 ~~~~~--~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g-~~FsaG~Dl~~~~~~~~~~~~~~ 77 (239)
T PLN02267 2 CTLEK--RGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEG-KFFSNGFDLAWAQAAGSAPSRLH 77 (239)
T ss_pred ceeEe--cCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCC-CceeCCcCHHHHhccccCHHHHH
Confidence 45665 78999999999986 9999999999999999999998865 77789988 89999999997643211 11111
Q ss_pred hhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 149 FGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 149 ~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.....+.+++.+|.++|||+||+|||+
T Consensus 78 ~~~~~~~~~~~~l~~~~kPvIAaV~G~ 104 (239)
T PLN02267 78 LMVAKLRPLVADLISLPMPTIAAVTGH 104 (239)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 122235677888999999999999996
No 76
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.83 E-value=2.2e-20 Score=157.62 Aligned_cols=95 Identities=27% Similarity=0.320 Sum_probs=77.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCc--cchhhhhHhhHHHHH
Q 030579 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY--ADYENFGRLNVLDLQ 158 (175)
Q Consensus 81 V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~--~~~~~~~~~~~~~~~ 158 (175)
+++|+||||+++|+|+.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++..... ..........+++++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~ 117 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV 117 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence 456999999999999999999999999999999999999999999669999999998754211 111111112245677
Q ss_pred HHHhcCCCcEEEEeeCC
Q 030579 159 VQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 159 ~~i~~~~kPvIAaV~G~ 175 (175)
.+|..|+|||||+|||+
T Consensus 118 ~~i~~~pKPVIAAVnG~ 134 (360)
T TIGR03200 118 SAILGCDKPVICRVNGM 134 (360)
T ss_pred HHHHhCCCCEEEEECCE
Confidence 78999999999999995
No 77
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=99.83 E-value=5.3e-20 Score=147.61 Aligned_cols=98 Identities=24% Similarity=0.305 Sum_probs=80.2
Q ss_pred cEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhh
Q 030579 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (175)
Q Consensus 70 ~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (175)
.+.++. +++|++|+|||| +.|+|+.+|+.+|.++++.++ +++++||++|.| ++||+|+|++++... ......
T Consensus 4 ~i~~~~--~~~v~~itln~~-~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g-~~F~~G~Dl~~~~~~-~~~~~~- 75 (229)
T PRK06213 4 LVSYTL--EDGVATITLDDG-KVNALSPAMIDALNAALDQAE--DDRAVVVITGQP-GIFSGGFDLKVMTSG-AQAAIA- 75 (229)
T ss_pred eEEEEe--cCCEEEEEeCCC-CCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCC-CceEcCcCHHHHhcc-hHhHHH-
Confidence 477877 799999999998 569999999999999999998 457999999999 999999999987542 111111
Q ss_pred hHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 150 GRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 150 ~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
....+.+++.++.++|||+||+|||+
T Consensus 76 ~~~~~~~l~~~l~~~~kPvIAav~G~ 101 (229)
T PRK06213 76 LLTAGSTLARRLLSHPKPVIVACTGH 101 (229)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEcCe
Confidence 22234667888999999999999996
No 78
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.83 E-value=5e-20 Score=168.79 Aligned_cols=104 Identities=18% Similarity=0.173 Sum_probs=85.2
Q ss_pred cEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCC--ccchh
Q 030579 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG--YADYE 147 (175)
Q Consensus 70 ~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~--~~~~~ 147 (175)
.+.++.. +++|++||||||+++|+|+.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.... .....
T Consensus 7 ~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~~~~ 84 (715)
T PRK11730 7 TLQVDWL-EDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAK-DAFIVGADITEFLSLFAAPEEEL 84 (715)
T ss_pred eEEEEEc-CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCC-CccccCcCHHHHhhhccCCHHHH
Confidence 4677643 789999999999999999999999999999999999999999999999 8999999999875321 11111
Q ss_pred hhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 148 NFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
......+++++.+|..||||+||+|||+
T Consensus 85 ~~~~~~~~~~~~~i~~~~kPvIAav~G~ 112 (715)
T PRK11730 85 SQWLHFANSIFNRLEDLPVPTVAAINGY 112 (715)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCE
Confidence 1122235667888999999999999996
No 79
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=99.82 E-value=8.5e-20 Score=142.02 Aligned_cols=101 Identities=38% Similarity=0.557 Sum_probs=86.0
Q ss_pred EEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccch-hhhh
Q 030579 72 IYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY-ENFG 150 (175)
Q Consensus 72 ~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~-~~~~ 150 (175)
.+++ +++|++|+||+|++.|+||.+|+++|.++++.++.|+++++|||+|.+ +.||+|+|++++........ ....
T Consensus 2 ~~~~--~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~-~~Fs~G~dl~~~~~~~~~~~~~~~~ 78 (195)
T cd06558 2 LVER--DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAG-KAFCAGADLKELAALSDAGEEARAF 78 (195)
T ss_pred EEEE--ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhcccccchhHHHH
Confidence 4566 789999999999989999999999999999999999999999999997 99999999998876443321 1223
Q ss_pred HhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 151 RLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 151 ~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
...+++++.++..++||+||+|||+
T Consensus 79 ~~~~~~~~~~i~~~~~p~Ia~v~G~ 103 (195)
T cd06558 79 IRELQELLRALLRLPKPVIAAVNGA 103 (195)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCe
Confidence 3346788889999999999999995
No 80
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.81 E-value=1.9e-19 Score=159.99 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=84.8
Q ss_pred CCCcccEEEEEEeCCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHhh-cCCCceEEEEecCCCCcccCCC
Q 030579 65 GTEFTDIIYEKAVGEGIAKITINRPD----------RRNAFRPHTVKELIRAFNDAR-DDSSVGVIILTGKGTEAFCSGG 133 (175)
Q Consensus 65 ~~~~~~v~~e~~~~~~V~~ItLnrp~----------~~Nal~~~~~~eL~~al~~~~-~d~~vkvvVltG~g~~~FcaG~ 133 (175)
.++++.|.++. +++|++|+||||+ |+|+|+.+|+.+|.++|+.++ .|+++|+|||||.++++||+|+
T Consensus 7 ~~~~~~v~~~~--~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~ 84 (546)
T TIGR03222 7 PSQYRHWKLTF--DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGA 84 (546)
T ss_pred CCCCceEEEEe--eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCc
Confidence 35677899988 7999999999976 899999999999999999999 7899999999998548999999
Q ss_pred CCCccccCCccchhhh---hHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 134 DQALRTRDGYADYENF---GRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 134 Dl~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
|++++........... .......+...+..||||+||+|||+
T Consensus 85 DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~ 129 (546)
T TIGR03222 85 NIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGT 129 (546)
T ss_pred CHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 9998753211111111 11111234456788999999999996
No 81
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.81 E-value=2.7e-19 Score=159.05 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=84.9
Q ss_pred CCCCcccEEEEEEeCCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHhh-cCCCceEEEEecCCCCc-
Q 030579 64 SGTEFTDIIYEKAVGEGIAKITINRPDRR-------------NAFRPHTVKELIRAFNDAR-DDSSVGVIILTGKGTEA- 128 (175)
Q Consensus 64 ~~~~~~~v~~e~~~~~~V~~ItLnrp~~~-------------Nal~~~~~~eL~~al~~~~-~d~~vkvvVltG~g~~~- 128 (175)
.+..|.+|.+..+.+++|++||||||+++ |+|+.+|+.+|.+++..++ +|+++|+|||||.| +.
T Consensus 251 ~~~~~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G-~~~ 329 (546)
T TIGR03222 251 DGVRYPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQG-DAE 329 (546)
T ss_pred CCcceeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCC-CCc
Confidence 34556666655444899999999999999 9999999999999999998 56999999999999 66
Q ss_pred ccCCCCCCccccCCccchhhhhHhhHHHHHHHHhcCCCcEEEEe-eCC
Q 030579 129 FCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV-HLP 175 (175)
Q Consensus 129 FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV-~G~ 175 (175)
||+|+|++.............. ...+.++.+|.+++||+||+| ||+
T Consensus 330 F~aG~Dl~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~kpviAav~~G~ 376 (546)
T TIGR03222 330 LVLAADALLEAHKDHWFVRETI-GYLRRTLARLDVSSRSLFALIEPGS 376 (546)
T ss_pred eecCcCccccccccchhHHHHH-HHHHHHHHHHHcCCCCEEEEECCCe
Confidence 9999999843211111111111 223457788999999999999 896
No 82
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.81 E-value=2.2e-19 Score=164.41 Aligned_cols=104 Identities=20% Similarity=0.303 Sum_probs=84.9
Q ss_pred EEEEEEeCCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhh
Q 030579 71 IIYEKAVGEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (175)
Q Consensus 71 v~~e~~~~~~V~~ItLnrp-~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (175)
+.++.. +++|++|+|||| +++|+|+.+|+.+|.++++.++.|+++|+|||+|.++++||+|+|++++...........
T Consensus 7 ~~~~~~-~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~ 85 (708)
T PRK11154 7 FTLNVR-EDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEA 85 (708)
T ss_pred EEEEEc-CCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHH
Confidence 566664 789999999999 689999999999999999999999999999999976589999999998754222111112
Q ss_pred hHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 150 GRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 150 ~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
....++.++.+|.+||||+||+|||+
T Consensus 86 ~~~~~~~~~~~i~~~~kPvIAaV~G~ 111 (708)
T PRK11154 86 LARQGQQLFAEIEALPIPVVAAIHGA 111 (708)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 22234667889999999999999996
No 83
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.80 E-value=2.5e-19 Score=164.15 Aligned_cols=104 Identities=23% Similarity=0.212 Sum_probs=85.8
Q ss_pred cEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCC--ccchh
Q 030579 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG--YADYE 147 (175)
Q Consensus 70 ~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~--~~~~~ 147 (175)
.+.++.. +++|++|+||||+++|+|+.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.... .....
T Consensus 7 ~i~~~~~-~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~ 84 (714)
T TIGR02437 7 TIQVTAL-EDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGK-DAFIVGADITEFLGLFALPDAEL 84 (714)
T ss_pred eEEEEEc-cCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccCcCHHHHhhcccCCHHHH
Confidence 5777754 789999999999999999999999999999999999999999999999 8999999999875421 11111
Q ss_pred hhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 148 NFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.......++++.+|..||||+||+|||+
T Consensus 85 ~~~~~~~~~~~~~i~~~pkPvIAai~G~ 112 (714)
T TIGR02437 85 IQWLLFANSIFNKLEDLPVPTVAAINGI 112 (714)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 1122235677889999999999999996
No 84
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.80 E-value=8.2e-19 Score=156.25 Aligned_cols=111 Identities=16% Similarity=0.180 Sum_probs=85.8
Q ss_pred CCCCcccEEEEEEeCCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHhhc-CCCceEEEEecCCCCcc
Q 030579 64 SGTEFTDIIYEKAVGEGIAKITINRPDRR-------------NAFRPHTVKELIRAFNDARD-DSSVGVIILTGKGTEAF 129 (175)
Q Consensus 64 ~~~~~~~v~~e~~~~~~V~~ItLnrp~~~-------------Nal~~~~~~eL~~al~~~~~-d~~vkvvVltG~g~~~F 129 (175)
.+..|.+|.++.+.+++|++||||||+++ |+|+.+|+.+|.++++.++. |+++|+|||||.|+++|
T Consensus 255 ~~~~~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F 334 (550)
T PRK08184 255 DGLRYRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAA 334 (550)
T ss_pred CceeeEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcE
Confidence 35677777776654789999999999998 68999999999999999985 79999999999983399
Q ss_pred cCCCCCCccccCCccchhhhhHhhHHHHHHHHhcCCCcEEEEee-CC
Q 030579 130 CSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVH-LP 175 (175)
Q Consensus 130 caG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~-G~ 175 (175)
|+|+|++............ ....++.++.+|.++|||+||+|| |+
T Consensus 335 ~aG~Dl~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~kPvIAaV~~G~ 380 (550)
T PRK08184 335 VLAADATLLAHKDHWLVRE-TRGYLRRTLKRLDVTSRSLFALIEPGS 380 (550)
T ss_pred EeCCChhhhcccchHHHHH-HHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence 9999987432211101111 112345567789999999999997 96
No 85
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.80 E-value=3.3e-19 Score=163.77 Aligned_cols=107 Identities=18% Similarity=0.258 Sum_probs=87.4
Q ss_pred CCcccEEEEEEeCCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEE-EEecCCCCcccCCCCCCccccCCc
Q 030579 66 TEFTDIIYEKAVGEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVI-ILTGKGTEAFCSGGDQALRTRDGY 143 (175)
Q Consensus 66 ~~~~~v~~e~~~~~~V~~ItLnrp~-~~Nal~~~~~~eL~~al~~~~~d~~vkvv-VltG~g~~~FcaG~Dl~~~~~~~~ 143 (175)
+.++.+.++. +++|++|+||||+ +.|+|+.+|+.+|.++++.++.|+++|+| |++|.| ++||+|+||+++.....
T Consensus 10 ~~~~~~~~~~--~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g-~~F~aG~Dl~~~~~~~~ 86 (737)
T TIGR02441 10 MARTHRHYEV--KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKP-GSFVAGADIQMIAACKT 86 (737)
T ss_pred CCCCeEEEEE--ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCC-CcceeCcCHHHHhccCC
Confidence 4556788887 7999999999998 58999999999999999999999999965 579999 89999999998864222
Q ss_pred cchhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 144 ADYENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 144 ~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
..........+++++.+|.+++||+||+|||+
T Consensus 87 ~~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~ 118 (737)
T TIGR02441 87 AQEVTQLSQEGQEMFERIEKSQKPIVAAISGS 118 (737)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 11111222335678889999999999999996
No 86
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.80 E-value=5.8e-19 Score=157.21 Aligned_cols=109 Identities=18% Similarity=0.201 Sum_probs=84.8
Q ss_pred CCCcccEEEEEEeCCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHhh-cCCCceEEEEecCCCCcccCCC
Q 030579 65 GTEFTDIIYEKAVGEGIAKITINRP-------D---RRNAFRPHTVKELIRAFNDAR-DDSSVGVIILTGKGTEAFCSGG 133 (175)
Q Consensus 65 ~~~~~~v~~e~~~~~~V~~ItLnrp-------~---~~Nal~~~~~~eL~~al~~~~-~d~~vkvvVltG~g~~~FcaG~ 133 (175)
.+.++.+.++. +++|++|+|||| + ++|+|+.+|+.+|.++++.++ .|+++++|||+|.++++||+|+
T Consensus 11 ~~~~~~~~~e~--~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~ 88 (550)
T PRK08184 11 PSQYRHWKLSF--DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGA 88 (550)
T ss_pred CCCCceEEEEe--eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCcc
Confidence 36788899998 799999999965 4 899999999999999999999 7899999999998658999999
Q ss_pred CCCccccCCccchhhhh---HhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 134 DQALRTRDGYADYENFG---RLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 134 Dl~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
|++++............ ......+..++.++|||+||+|||+
T Consensus 89 DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~ 133 (550)
T PRK08184 89 NIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGT 133 (550)
T ss_pred CHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 99987542211111111 1111224456788999999999996
No 87
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.79 E-value=6.6e-19 Score=161.08 Aligned_cols=97 Identities=24% Similarity=0.376 Sum_probs=79.6
Q ss_pred CCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHhhcCCCceEEEE-ecCCCCcccCCCCCCccccCCccchhhhhHhhHH
Q 030579 78 GEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVL 155 (175)
Q Consensus 78 ~~~V~~ItLnrp-~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVl-tG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 155 (175)
+++|++|||||| +++|+||.+|+.+|.++|+.++.|+++|+||| +|.| ++||+|+|++++...............++
T Consensus 8 ~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 86 (699)
T TIGR02440 8 EDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKP-DNFIAGADISMLAACQTAGEAKALAQQGQ 86 (699)
T ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CceeeccCchhhhccCChhHHHHHHHHHH
Confidence 789999999999 68999999999999999999999999999987 5777 89999999998754221111111122346
Q ss_pred HHHHHHhcCCCcEEEEeeCC
Q 030579 156 DLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 156 ~~~~~i~~~~kPvIAaV~G~ 175 (175)
.++.+|.++|||+||+|||+
T Consensus 87 ~~~~~l~~~~kPvIAaVnG~ 106 (699)
T TIGR02440 87 VLFAELEALPIPVVAAIHGA 106 (699)
T ss_pred HHHHHHHhCCCCEEEEECCE
Confidence 67888999999999999996
No 88
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.75 E-value=6.4e-18 Score=140.95 Aligned_cols=103 Identities=26% Similarity=0.371 Sum_probs=87.7
Q ss_pred ccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCcccc---CCcc-
Q 030579 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTR---DGYA- 144 (175)
Q Consensus 69 ~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~---~~~~- 144 (175)
..|.++. .+....||||||+++||||.+|+..+.-.+..++.++.+++||+.|.++++||||+|++.... .+..
T Consensus 38 ~~VL~e~--~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~ 115 (401)
T KOG1684|consen 38 DQVLVEG--KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETP 115 (401)
T ss_pred CceEEec--CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCch
Confidence 4688988 899999999999999999999999999999999999999999999998899999999985433 2222
Q ss_pred chhhhhHhhHHHHHHHHhcCCCcEEEEeeC
Q 030579 145 DYENFGRLNVLDLQVQIRRLPKPVIAMVHL 174 (175)
Q Consensus 145 ~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G 174 (175)
....++.. -+.+...|.++.||+||.+||
T Consensus 116 ~~~~fF~~-eYsl~~~igtY~KP~ValmdG 144 (401)
T KOG1684|consen 116 EVKKFFTE-EYSLNHLIGTYLKPYVALMDG 144 (401)
T ss_pred HHHHHHHH-HHHHHHHHHHhcCceEEEeec
Confidence 22334443 467788999999999999998
No 89
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=99.74 E-value=2.2e-17 Score=132.52 Aligned_cols=108 Identities=29% Similarity=0.434 Sum_probs=89.8
Q ss_pred CCCcccEEEEEEeCCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCc
Q 030579 65 GTEFTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143 (175)
Q Consensus 65 ~~~~~~v~~e~~~~~~V~~ItLn-rp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~ 143 (175)
.+.+..+.+++ +||+.+|.++ ||++.|+++.+++.++..+++...+|+++..++++|.| ++||+|.|+..+.....
T Consensus 3 ~~~~~~~vv~~--~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G-~~f~sG~Df~~~~~~~~ 79 (266)
T KOG0016|consen 3 AMRYREIVVTR--ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNG-SYFCSGLDFSPFAKALD 79 (266)
T ss_pred cccccceEEEe--cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCc-cEEeeccccchhhhcCC
Confidence 46788899988 8999999999 99999999999999999999999999999999999999 99999999997754322
Q ss_pred cch------hhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 144 ADY------ENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 144 ~~~------~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.+. .......+..+..++..++||+||.||||
T Consensus 80 ~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGP 117 (266)
T KOG0016|consen 80 DDANEESDKASKFVKNVSCFVNTFINFPKPLVALVNGP 117 (266)
T ss_pred CcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 221 11112223346778899999999999998
No 90
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.72 E-value=1.5e-17 Score=130.69 Aligned_cols=105 Identities=29% Similarity=0.478 Sum_probs=91.3
Q ss_pred cEEEEEE--eCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchh
Q 030579 70 DIIYEKA--VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (175)
Q Consensus 70 ~v~~e~~--~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (175)
.|.+++- .+.||..|-+|||.+.|+|..-|+++|.++|+++..|+.+|+|+|.+.-+..||+|+||++...++..+..
T Consensus 28 Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~ 107 (291)
T KOG1679|consen 28 EVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVT 107 (291)
T ss_pred eeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHH
Confidence 3555432 36789999999999999999999999999999999999999999999988999999999999888777665
Q ss_pred hhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 148 NFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.|.. .+..++..|.++|.|+||||+|.
T Consensus 108 ~fV~-~lR~~~~dIe~Lp~P~IAAidG~ 134 (291)
T KOG1679|consen 108 RFVN-GLRGLFNDIERLPQPVIAAIDGA 134 (291)
T ss_pred HHHH-HHHHHHHHHHhCCccceehhcch
Confidence 4443 46788899999999999999984
No 91
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=99.63 E-value=1.3e-15 Score=118.95 Aligned_cols=102 Identities=25% Similarity=0.339 Sum_probs=85.8
Q ss_pred EEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhh
Q 030579 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (175)
Q Consensus 71 v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 150 (175)
.+++. +++|..|+|++|+|+|+|+.+|+.+|.+.+....++-++|+|||+..| +.|++|-||+++......+-....
T Consensus 34 g~~~~--~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~G-kifSaGH~LKELt~e~g~d~haev 110 (287)
T KOG1682|consen 34 GLVKE--HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQG-KIFSAGHNLKELTNEPGSDIHAEV 110 (287)
T ss_pred ccccc--ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCC-ccccccccHHHhhcCccchHHHHH
Confidence 44544 799999999999999999999999999999999888899999999999 999999999999875543322222
Q ss_pred HhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 151 RLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 151 ~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.....++..-|+++|+|+||.|||+
T Consensus 111 Fqtc~dvmn~Irn~pVPVia~VNG~ 135 (287)
T KOG1682|consen 111 FQTCTDVMNDIRNLPVPVIAKVNGY 135 (287)
T ss_pred HHHHHHHHHHHhcCCCceEEEecch
Confidence 2235677888999999999999995
No 92
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=98.66 E-value=7.1e-08 Score=76.58 Aligned_cols=77 Identities=21% Similarity=0.173 Sum_probs=56.8
Q ss_pred EEEEEEcCC--CCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHHH
Q 030579 81 IAKITINRP--DRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQ 158 (175)
Q Consensus 81 V~~ItLnrp--~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 158 (175)
|++|.++-+ ...+..+...+.+|.++|+.+..|+++++|||+ .||+|+|+..+. .+.+.+
T Consensus 2 i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~-----~~s~Gg~~~~~~-------------~~~~~l 63 (211)
T cd07019 2 IGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR-----VNSPGGSVTASE-------------VIRAEL 63 (211)
T ss_pred EEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE-----EcCCCcCHHHHH-------------HHHHHH
Confidence 455555433 122333455689999999999999999999997 789999986542 123445
Q ss_pred HHHhcCCCcEEEEeeCC
Q 030579 159 VQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 159 ~~i~~~~kPvIAaV~G~ 175 (175)
..+..++||+||+++|+
T Consensus 64 ~~~~~~~kpVia~v~g~ 80 (211)
T cd07019 64 AAARAAGKPVVVSAGGA 80 (211)
T ss_pred HHHHhCCCCEEEEECCe
Confidence 66788999999999985
No 93
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=98.46 E-value=5.1e-07 Score=69.65 Aligned_cols=60 Identities=23% Similarity=0.150 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 98 ~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
-.+.+|.++|+.+++|+++|+|||++ ||.|+|+... ..+.+...++.+++||+||+|+|+
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~-----~~~gg~~~~~-------------~~~~~~i~~~~~~~kpVia~v~G~ 81 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV-----NSPGGSVTAS-------------EVIRAELAAARAAGKPVVASGGGN 81 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe-----eCCCcCHHHH-------------HHHHHHHHHHHhCCCCEEEEECCc
Confidence 35689999999999999999999986 5888876532 123445667888999999999985
No 94
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=98.20 E-value=4e-06 Score=66.26 Aligned_cols=61 Identities=25% Similarity=0.314 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 97 PHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 97 ~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
..++.+|.++|+.++.|+++++|||.+ +|.|+|+... ..+.+....+..++||+||+++|+
T Consensus 16 ~~~~~~l~~~l~~a~~d~~i~~ivl~~-----~s~Gg~~~~~-------------~~i~~~i~~~~~~~kpvia~v~g~ 76 (208)
T cd07023 16 GIGADSLIEQLRKAREDDSVKAVVLRI-----NSPGGSVVAS-------------EEIYREIRRLRKAKKPVVASMGDV 76 (208)
T ss_pred CCCHHHHHHHHHHHHhCCCCcEEEEEE-----ECCCCCHHHH-------------HHHHHHHHHHHhcCCcEEEEECCc
Confidence 678999999999999999999999987 3778887541 113345667788899999999984
No 95
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=98.15 E-value=7e-06 Score=65.26 Aligned_cols=70 Identities=24% Similarity=0.220 Sum_probs=48.1
Q ss_pred cCCCCCCC-CCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHHHHHHhcCC
Q 030579 87 NRPDRRNA-FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLP 165 (175)
Q Consensus 87 nrp~~~Na-l~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 165 (175)
+++...|+ ++..++.+|.++|+.+++|+++++|||+. +|.|+++... ..+.+....+.. +
T Consensus 13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~-----~s~gg~~~~~-------------~~l~~~l~~~~~-~ 73 (214)
T cd07022 13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI-----DSPGGEVAGV-------------FELADAIRAARA-G 73 (214)
T ss_pred CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE-----eCCCCcHHHH-------------HHHHHHHHHHhc-C
Confidence 45555665 45689999999999999999999999975 3556544221 112222333333 5
Q ss_pred CcEEEEeeCC
Q 030579 166 KPVIAMVHLP 175 (175)
Q Consensus 166 kPvIAaV~G~ 175 (175)
||+||+++|.
T Consensus 74 KpViA~v~g~ 83 (214)
T cd07022 74 KPIVAFVNGL 83 (214)
T ss_pred CCEEEEECCc
Confidence 9999999984
No 96
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=97.59 E-value=8.7e-05 Score=59.32 Aligned_cols=62 Identities=21% Similarity=0.191 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHHHHHHhcCCCcEEEEeeC
Q 030579 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVHL 174 (175)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G 174 (175)
-+...+.+|.++|+++..|++|++|||...+ ..| +++++.++ .+....+...+||+||.++|
T Consensus 26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s-~gg-~~~~~~el----------------~~~i~~~~~~~kpVia~~~~ 87 (222)
T cd07018 26 SSELSLRDLLEALEKAAEDDRIKGIVLDLDG-LSG-GLAKLEEL----------------RQALERFRASGKPVIAYADG 87 (222)
T ss_pred cCCccHHHHHHHHHHHhcCCCeEEEEEECCC-CCC-CHHHHHHH----------------HHHHHHHHHhCCeEEEEeCC
Confidence 3466789999999999999999999999988 555 55555443 23344566689999999886
No 97
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=97.58 E-value=0.0002 Score=56.61 Aligned_cols=55 Identities=20% Similarity=0.366 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHHHHHHhcCC--CcEEEEeeCC
Q 030579 100 VKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLP--KPVIAMVHLP 175 (175)
Q Consensus 100 ~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--kPvIAaV~G~ 175 (175)
..+|.++|+.+.+|+++++|||++. |.|+++.. ..++..+|.+++ ||+||+++|.
T Consensus 15 ~~~l~~~l~~a~~d~~i~~vvl~~~-----s~Gg~~~~----------------~~~l~~~i~~~~~~kpvia~v~g~ 71 (207)
T TIGR00706 15 PEDFDKKIKRIKDDKSIKALLLRIN-----SPGGTVVA----------------SEEIYEKLKKLKAKKPVVASMGGV 71 (207)
T ss_pred HHHHHHHHHHHhhCCCccEEEEEec-----CCCCCHHH----------------HHHHHHHHHHhcCCCCEEEEECCc
Confidence 5788999999999999999999864 56665532 134455666776 9999999984
No 98
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=97.57 E-value=0.00015 Score=54.69 Aligned_cols=60 Identities=25% Similarity=0.264 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHHHHHHhcCCCcEEEEeeC
Q 030579 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVHL 174 (175)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G 174 (175)
++..++.+|.+.|+.++.|+++++|+|.. +|.|+|+.. ...+...|..++||+||.++|
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~-----~s~Gg~~~~----------------~~~i~~~l~~~~kpvva~~~g 66 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV-----NTPGGRVDA----------------GMNIVDALQASRKPVIAYVGG 66 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE-----ECCCcCHHH----------------HHHHHHHHHHhCCCEEEEECC
Confidence 55678999999999999999999999975 356665422 224455677889999999998
Q ss_pred C
Q 030579 175 P 175 (175)
Q Consensus 175 ~ 175 (175)
.
T Consensus 67 ~ 67 (161)
T cd00394 67 Q 67 (161)
T ss_pred h
Confidence 4
No 99
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=96.56 E-value=0.014 Score=53.26 Aligned_cols=78 Identities=17% Similarity=0.179 Sum_probs=53.5
Q ss_pred CCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCC--CcccCCCCCCccccCCccchhhhhHhh
Q 030579 78 GEGIAKITINRPD--RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT--EAFCSGGDQALRTRDGYADYENFGRLN 153 (175)
Q Consensus 78 ~~~V~~ItLnrp~--~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~--~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 153 (175)
++.|++|.++.+= ..+.......+.+.+.++.+..|++||+|||.-..+ ..||+ ..
T Consensus 307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as--------------------e~ 366 (584)
T TIGR00705 307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS--------------------EI 366 (584)
T ss_pred CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH--------------------HH
Confidence 6789999998762 234444444567888999999999999999985432 22332 11
Q ss_pred HHHHHHHHhcCCCcEEEEeeCC
Q 030579 154 VLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 154 ~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
+.+...++...+||+||.++|.
T Consensus 367 i~~~i~~~~~~gKPVva~~~g~ 388 (584)
T TIGR00705 367 IRRELARAQARGKPVIVSMGAM 388 (584)
T ss_pred HHHHHHHHHhCCCcEEEEECCc
Confidence 2233445667889999999874
No 100
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=96.52 E-value=0.0012 Score=56.34 Aligned_cols=94 Identities=7% Similarity=0.036 Sum_probs=76.9
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHHH
Q 030579 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQ 158 (175)
Q Consensus 79 ~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 158 (175)
.++..+.++ |+. |..|.++..+|..-++.++.+..+++.++++...+-|++|.|..+.-.... ........++++++
T Consensus 65 ~~~~~~dmv-iea-v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h-~fspa~~m~LlEii 141 (380)
T KOG1683|consen 65 TGFANADMV-IEA-VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMH-FFSPAHWMQLLEII 141 (380)
T ss_pred cccccccee-ccc-hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcccc-ccCHHHHHHHHHHH
Confidence 467778888 665 999999999999999999999889999999998889999999987654322 22233344578999
Q ss_pred HHHhcCCCcEEEEeeCC
Q 030579 159 VQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 159 ~~i~~~~kPvIAaV~G~ 175 (175)
.+...++.|+.+|+||+
T Consensus 142 ~~~~tS~~~iA~Ain~~ 158 (380)
T KOG1683|consen 142 LALYTSKLTIATAINGG 158 (380)
T ss_pred HhcCCCchHHHHHHhcc
Confidence 99999999999999874
No 101
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=96.41 E-value=0.02 Score=44.49 Aligned_cols=66 Identities=26% Similarity=0.336 Sum_probs=43.8
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEe-cCCCCcccCCCCCCccccCCccchhhhhHhhHHHHHHH
Q 030579 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT-GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ 160 (175)
Q Consensus 82 ~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVlt-G~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (175)
++|.|+. .++..+...+.++++.+++++ ++.|+|. ... |+++.. ...++.+
T Consensus 2 ~vv~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InSp------GG~v~~----------------~~~i~~~ 53 (187)
T cd07020 2 YVLEING-----AITPATADYLERAIDQAEEGG-ADALIIELDTP------GGLLDS----------------TREIVQA 53 (187)
T ss_pred EEEEEee-----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEECC------CCCHHH----------------HHHHHHH
Confidence 4566653 366777888999999988665 7877765 322 222211 1244556
Q ss_pred HhcCCCcEEEEee---CC
Q 030579 161 IRRLPKPVIAMVH---LP 175 (175)
Q Consensus 161 i~~~~kPvIAaV~---G~ 175 (175)
|..++||+||+|+ |+
T Consensus 54 l~~~~kPvia~v~~~~G~ 71 (187)
T cd07020 54 ILASPVPVVVYVYPSGAR 71 (187)
T ss_pred HHhCCCCEEEEEecCCCC
Confidence 7889999999998 74
No 102
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=94.61 E-value=0.2 Score=38.78 Aligned_cols=60 Identities=23% Similarity=0.339 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHHHHHHhcCCCcEEEEee
Q 030579 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVH 173 (175)
Q Consensus 94 al~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~ 173 (175)
.+++.+...|.++|+.+++++ ++.|||.=.. -|+++ .....+...|.++++|+|+.|+
T Consensus 9 ~I~~~~~~~l~~~l~~a~~~~-~~~ivl~ins-----pGG~v----------------~~~~~I~~~l~~~~~pvva~V~ 66 (178)
T cd07021 9 EIDPGLAAFVERALKEAKEEG-ADAVVLDIDT-----PGGRV----------------DSALEIVDLILNSPIPTIAYVN 66 (178)
T ss_pred EECHHHHHHHHHHHHHHHhCC-CCeEEEEEEC-----cCCCH----------------HHHHHHHHHHHhCCCCEEEEEC
Confidence 366778888999999998876 6666653221 12211 1133556778899999999999
Q ss_pred CC
Q 030579 174 LP 175 (175)
Q Consensus 174 G~ 175 (175)
|.
T Consensus 67 g~ 68 (178)
T cd07021 67 DR 68 (178)
T ss_pred Cc
Confidence 84
No 103
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=91.00 E-value=0.91 Score=37.78 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.2
Q ss_pred HHHHHHHhhcCCCceEEEEecCC
Q 030579 103 LIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 103 L~~al~~~~~d~~vkvvVltG~g 125 (175)
+.++|+.+++||+.++||+-|.-
T Consensus 188 fid~L~~fe~Dp~T~~ivmiGEi 210 (293)
T COG0074 188 FIDALEMFEADPETEAIVMIGEI 210 (293)
T ss_pred HHHHHHHHhcCccccEEEEEecC
Confidence 35788999999999999999983
No 104
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=89.22 E-value=0.76 Score=34.42 Aligned_cols=54 Identities=20% Similarity=0.243 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 98 ~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.+...+.+.|+.+..++.+ .+.|.+.|+ ..-+ ...+...|..++||+|++++|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG-~~~~----------------------~~~i~~~i~~~~~pvi~~v~g~ 68 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPGG-DVFA----------------------GLAIYNALKRHKGKVTVKIDGL 68 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCCC-CHHH----------------------HHHHHHHHHhcCCCEEEEEcch
Confidence 4667888888888877433 344455442 1111 1345667888999999999984
No 105
>PRK10949 protease 4; Provisional
Probab=88.48 E-value=2.6 Score=38.93 Aligned_cols=76 Identities=24% Similarity=0.242 Sum_probs=47.2
Q ss_pred CCCEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHh
Q 030579 78 GEGIAKITINRP-----DRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRL 152 (175)
Q Consensus 78 ~~~V~~ItLnrp-----~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 152 (175)
++.|++|.++-. .....++. +.+.+.|+++.+|++||+|||.=..+ |+. .. ...
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp-----GGs---------~~----ase 383 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP-----GGS---------VT----ASE 383 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC-----CCc---------HH----HHH
Confidence 566788877532 22234554 46678889999999999999986552 211 11 111
Q ss_pred hHHHHHHHHhcCCCcEEEEeeC
Q 030579 153 NVLDLQVQIRRLPKPVIAMVHL 174 (175)
Q Consensus 153 ~~~~~~~~i~~~~kPvIAaV~G 174 (175)
.+.+...++....||+||.+.|
T Consensus 384 ~i~~~i~~~r~~gKPVvas~~~ 405 (618)
T PRK10949 384 VIRAELAAARAAGKPVVVSMGG 405 (618)
T ss_pred HHHHHHHHHHhcCCcEEEEECC
Confidence 1233344455678999998765
No 106
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=88.21 E-value=1.3 Score=40.48 Aligned_cols=59 Identities=19% Similarity=0.233 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHHHHHHhcCCCcEEEEeeC
Q 030579 99 TVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVHL 174 (175)
Q Consensus 99 ~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G 174 (175)
.+.++.++++.+.+|++||+|||.-.+ ..|+++.. ...+.+....+....|||||..++
T Consensus 77 ~l~~i~~~i~~A~~D~~IkgIvL~i~~----~~g~~~~~-------------~~ei~~ai~~fk~sgKpVvA~~~~ 135 (584)
T TIGR00705 77 SLFDIVNAIRQAADDRRIEGLVFDLSN----FSGWDSPH-------------LVEIGSALSEFKDSGKPVYAYGTN 135 (584)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEccC----CCCCCHHH-------------HHHHHHHHHHHHhcCCeEEEEEcc
Confidence 567899999999999999999998754 11222111 111333344555678999997654
No 107
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=87.38 E-value=2 Score=31.85 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=28.2
Q ss_pred HHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHHHHHHhcCCCcEEEEeeC
Q 030579 102 ELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVHL 174 (175)
Q Consensus 102 eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G 174 (175)
.+.+.++.+.+||++++|++.-.+ +.+ .. .+.+......+. ||+|+..-|
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~------------~~d-----~~-----~f~~~~~~a~~~-KPVv~lk~G 90 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEG------------IGD-----GR-----RFLEAARRAARR-KPVVVLKAG 90 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES--------------S------HH-----HHHHHHHHHCCC-S-EEEEE--
T ss_pred CHHHHHHHHhcCCCCCEEEEEccC------------CCC-----HH-----HHHHHHHHHhcC-CCEEEEeCC
Confidence 457888899999999999999876 111 11 123345555555 999998766
No 108
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=85.92 E-value=2.1 Score=37.72 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHHHHHHhcCCCcEEEEe
Q 030579 97 PHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (175)
Q Consensus 97 ~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV 172 (175)
.+...++..+++.++..+++-+|||.-.| ++ .. +.+..+-..+..+|+.|+.|||.+|
T Consensus 169 ~~a~~~i~~al~~~~~~~~~dviii~RGG-Gs--------------~e---DL~~Fn~e~~~rai~~~~~Pvis~i 226 (432)
T TIGR00237 169 EGAVQSIVESIELANTKNECDVLIVGRGG-GS--------------LE---DLWSFNDEKVARAIFLSKIPIISAV 226 (432)
T ss_pred ccHHHHHHHHHHHhhcCCCCCEEEEecCC-CC--------------HH---HhhhcCcHHHHHHHHcCCCCEEEec
Confidence 34456777777777654445555543323 11 11 1122222467888999999999997
No 109
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=85.14 E-value=2.8 Score=35.55 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=20.8
Q ss_pred HHHHHHHHhhcCCCceEEEEecCC
Q 030579 102 ELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 102 eL~~al~~~~~d~~vkvvVltG~g 125 (175)
.+.+.|+.+++||+.++|++.+..
T Consensus 211 ~~~D~L~~~~~Dp~T~~Ivl~~E~ 234 (317)
T PTZ00187 211 NFIDCLKLFLNDPETEGIILIGEI 234 (317)
T ss_pred CHHHHHHHHhhCCCccEEEEEEec
Confidence 356888899999999999999985
No 110
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=84.71 E-value=3 Score=34.83 Aligned_cols=56 Identities=23% Similarity=0.388 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhcCC---CceEEEEe-cCCCCcccCCCCCCccccCCccchhhhhHhhHHHHHHHHhcCCCcEEEEe
Q 030579 98 HTVKELIRAFNDARDDS---SVGVIILT-GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (175)
Q Consensus 98 ~~~~eL~~al~~~~~d~---~vkvvVlt-G~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV 172 (175)
....++.++++.+.... .+-+|||. |.| + +. +.+..+-..+..+|..|+.|||++|
T Consensus 55 ~A~~~I~~al~~~~~~~~~~~~Dviii~RGGG--s------~e-----------DL~~FN~e~varai~~~~~PvisaI 114 (319)
T PF02601_consen 55 GAAASIVSALRKANEMGQADDFDVIIIIRGGG--S------IE-----------DLWAFNDEEVARAIAASPIPVISAI 114 (319)
T ss_pred chHHHHHHHHHHHHhccccccccEEEEecCCC--C------hH-----------HhcccChHHHHHHHHhCCCCEEEec
Confidence 45678888888887654 45566654 433 1 11 1122122466888999999999997
No 111
>PLN02522 ATP citrate (pro-S)-lyase
Probab=81.90 E-value=3.9 Score=37.64 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.2
Q ss_pred HHHHHHHhhcCCCceEEEEecC-C
Q 030579 103 LIRAFNDARDDSSVGVIILTGK-G 125 (175)
Q Consensus 103 L~~al~~~~~d~~vkvvVltG~-g 125 (175)
+.+.|+.+++||++++|++.|. |
T Consensus 210 ~~D~L~~~~~Dp~Tk~IvlygEiG 233 (608)
T PLN02522 210 LSDHVLRFNNIPQIKMIVVLGELG 233 (608)
T ss_pred HHHHHHHHhcCCCCCEEEEEEecC
Confidence 4677888999999999999998 6
No 112
>PRK10949 protease 4; Provisional
Probab=80.80 E-value=6.9 Score=36.15 Aligned_cols=59 Identities=24% Similarity=0.334 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHHHHHHhcCCCcEEEEee
Q 030579 98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVH 173 (175)
Q Consensus 98 ~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~ 173 (175)
-.+.++.++++.+.+|++|++|||.-.+. .|..+. ....+.+....+....||+||.-+
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~----gG~~~a-------------~~~eI~~ai~~fk~sGKpVvA~~~ 153 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNF----AGADQP-------------SMQYIGKALREFRDSGKPVYAVGD 153 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCC----CCccHH-------------HHHHHHHHHHHHHHhCCeEEEEec
Confidence 34568899999999999999999987651 121110 011233444556667899998643
No 113
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=78.76 E-value=4.6 Score=35.71 Aligned_cols=17 Identities=29% Similarity=0.239 Sum_probs=15.3
Q ss_pred HHHHHHhcCCCcEEEEe
Q 030579 156 DLQVQIRRLPKPVIAMV 172 (175)
Q Consensus 156 ~~~~~i~~~~kPvIAaV 172 (175)
.+.++|+.+..|+|++|
T Consensus 216 ~vaRAi~~s~iPvISAV 232 (440)
T COG1570 216 IVARAIAASRIPVISAV 232 (440)
T ss_pred HHHHHHHhCCCCeEeec
Confidence 56788999999999998
No 114
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=75.59 E-value=11 Score=28.39 Aligned_cols=28 Identities=29% Similarity=0.321 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEecCC
Q 030579 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
++++.. .++|..+.+||++++|++-+.+
T Consensus 56 id~~~~---~~~l~~~~~Dp~v~vIlvd~~~ 83 (153)
T PF00549_consen 56 IDPSTR---NEALEIEAADPEVKVILVDIVG 83 (153)
T ss_dssp T-SSHH---HHHHHHHHTSTTESEEEEEEES
T ss_pred cCHHHH---HHHHHHHhcCCCccEEEEEecc
Confidence 565444 6777888889999999999876
No 115
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=75.16 E-value=8 Score=33.87 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCCcEEEEe
Q 030579 155 LDLQVQIRRLPKPVIAMV 172 (175)
Q Consensus 155 ~~~~~~i~~~~kPvIAaV 172 (175)
..+..+|..|+.|||++|
T Consensus 214 e~v~~ai~~~~~Pvis~I 231 (438)
T PRK00286 214 EAVARAIAASRIPVISAV 231 (438)
T ss_pred HHHHHHHHcCCCCEEEec
Confidence 467889999999999998
No 116
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=71.44 E-value=11 Score=31.74 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.2
Q ss_pred HHHHHHHHhhcCCCceEEEEecCC
Q 030579 102 ELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 102 eL~~al~~~~~d~~vkvvVltG~g 125 (175)
.+.+.|+.+.+||++++|++...+
T Consensus 192 ~~~d~L~yl~~Dp~T~~I~ly~E~ 215 (300)
T PLN00125 192 NFVDCLEKFVKDPQTEGIILIGEI 215 (300)
T ss_pred CHHHHHHHHhhCCCCcEEEEEecc
Confidence 456788888899999999999875
No 117
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=69.13 E-value=12 Score=33.10 Aligned_cols=51 Identities=22% Similarity=0.260 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHHHHHHhcCCCcEEEEeeC
Q 030579 101 KELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVHL 174 (175)
Q Consensus 101 ~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G 174 (175)
-.+.+.++.+.+|+++++|++...+ +. +... +.....+..+ .||||+..-|
T Consensus 189 ~~~~d~l~~l~~D~~t~~I~ly~E~------------~~-----~~~~-----f~~aa~~a~~-~KPVv~~k~G 239 (447)
T TIGR02717 189 IDESDLLEYLADDPDTKVILLYLEG------------IK-----DGRK-----FLKTAREISK-KKPIVVLKSG 239 (447)
T ss_pred CCHHHHHHHHhhCCCCCEEEEEecC------------CC-----CHHH-----HHHHHHHHcC-CCCEEEEecC
Confidence 3557888999999999999999776 11 1111 2233444555 8999998766
No 118
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=68.68 E-value=19 Score=27.17 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHHHHHHhcCCCcEEEEeeC
Q 030579 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVHL 174 (175)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G 174 (175)
++..+..++.+.|..++.++..+.|+|.=. |.|+++ .....++..|..+++|+++.+.|
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In-----SpGG~v----------------~~~~~i~~~i~~~~~~v~~~~~g 67 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN-----SPGGDV----------------FAGMAIYDTIKFIKADVVTIIDG 67 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE-----CCCCcH----------------HHHHHHHHHHHhcCCCceEEEEe
Confidence 567888999999999998876666665322 222221 01234566677788898888776
No 119
>PRK06091 membrane protein FdrA; Validated
Probab=65.93 E-value=20 Score=32.73 Aligned_cols=50 Identities=24% Similarity=0.265 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHHHHHHhcCCCcEEEEeeC
Q 030579 102 ELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVHL 174 (175)
Q Consensus 102 eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G 174 (175)
.+.+.++.+.+||++++|++.++.+ + +..+. ++..+..++.||||+..-|
T Consensus 239 ~~~D~L~~L~~DP~TkvIvly~kpp-a-------------------E~v~~---~fl~aar~~~KPVVvlk~G 288 (555)
T PRK06091 239 SALTALEMLSADEKSEVIAFVSKPP-A-------------------EAVRL---KIINAMKATGKPVVALFLG 288 (555)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEecC-c-------------------hHHHH---HHHHHHhhCCCCEEEEEec
Confidence 4467778888889999999988652 1 00111 2334455679999998766
No 120
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=65.23 E-value=14 Score=30.42 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=34.1
Q ss_pred HHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHHHHHHhcCCCcEEEEeeC
Q 030579 102 ELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVHL 174 (175)
Q Consensus 102 eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G 174 (175)
.+.++|+-+-+|++.++||+-|.-+. ....++.++... . .-..-+||||++|.|
T Consensus 218 ~FID~L~vFl~D~~t~GIiliGEIGG-------------~AEe~AA~flk~----~--nSg~~~kPVvsFIAG 271 (329)
T KOG1255|consen 218 NFIDCLEVFLEDPETEGIILIGEIGG-------------SAEEEAAEFLKE----Y--NSGSTAKPVVSFIAG 271 (329)
T ss_pred cHHHHHHHHhcCcccceEEEEeccCC-------------hhhHHHHHHHHH----h--ccCCCCCceeEEeec
Confidence 34677888889999999999986411 111122222221 1 123478999999987
No 121
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=63.66 E-value=24 Score=29.50 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=20.3
Q ss_pred HHHHHHHHhhcCCCceEEEEecCC
Q 030579 102 ELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 102 eL~~al~~~~~d~~vkvvVltG~g 125 (175)
.+.+.++.+.+||++++|++...+
T Consensus 187 ~~~D~l~~l~~Dp~T~~I~lylE~ 210 (291)
T PRK05678 187 NFIDVLEAFEEDPETEAIVMIGEI 210 (291)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEec
Confidence 446788889999999999999875
No 122
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=63.14 E-value=7.1 Score=34.16 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=36.2
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEE--ecCCCCcccCCCCCC
Q 030579 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL--TGKGTEAFCSGGDQA 136 (175)
Q Consensus 81 V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVl--tG~g~~~FcaG~Dl~ 136 (175)
|++|+|. .|+.....+|..++..++.+. ++++|| ++.+++...+..++.
T Consensus 205 IGyI~I~------~F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~ 255 (406)
T COG0793 205 IGYIRIP------SFGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLA 255 (406)
T ss_pred EEEEEec------ccccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHH
Confidence 7777664 477778888999999998776 888886 666655666665554
No 123
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=61.95 E-value=23 Score=29.46 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=20.2
Q ss_pred HHHHHHHHhhcCCCceEEEEecCC
Q 030579 102 ELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 102 eL~~al~~~~~d~~vkvvVltG~g 125 (175)
.+.+.++.+.+||++++|++...+
T Consensus 185 ~~~D~l~~l~~Dp~T~~I~lylE~ 208 (286)
T TIGR01019 185 SFIDVLEAFEKDPETEAIVMIGEI 208 (286)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEec
Confidence 456778888999999999999875
No 124
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=61.14 E-value=47 Score=25.51 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHHHHHHhcCCCcEEEEee
Q 030579 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVH 173 (175)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~ 173 (175)
+++.+...|.++++.++++ .++.|+|.=. |-|+.+.. ...+...|...++||++.|.
T Consensus 10 I~~~~~~~l~~~l~~A~~~-~~~~i~l~in-----SPGG~v~~----------------~~~I~~~i~~~~~pvv~~v~ 66 (172)
T cd07015 10 ITSYTYDQFDRYITIAEQD-NAEAIIIELD-----TPGGRADA----------------AGNIVQRIQQSKIPVIIYVY 66 (172)
T ss_pred ECHhHHHHHHHHHHHHhcC-CCCeEEEEEE-----CCCCCHHH----------------HHHHHHHHHhcCcCEEEEEe
Confidence 6677788889999988865 4677766422 22222211 12445567778999999987
No 125
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=60.12 E-value=39 Score=28.48 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEE-EecCC
Q 030579 93 NAFRPHTVKELIRAFNDARDDSSVGVII-LTGKG 125 (175)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~vkvvV-ltG~g 125 (175)
--++++-+.+|.+.+++.-+++++.++| +.|..
T Consensus 55 s~~t~~~w~~la~~i~~~~~~~~~dG~VVtHGTD 88 (323)
T smart00870 55 SNMTPADWLKLAKRINEALADDGYDGVVVTHGTD 88 (323)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCEEEEecCCc
Confidence 3489999999999998764555555555 55544
No 126
>PLN02312 acyl-CoA oxidase
Probab=52.95 E-value=13 Score=34.81 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=17.8
Q ss_pred CchhhHH--HHHHHHHhhhccccC
Q 030579 1 MAPQIDS--ARRRMTAVANHLVPV 22 (175)
Q Consensus 1 ~~~~~~~--~~~r~~~i~~hl~~~ 22 (175)
|.+-|+. +.||+.+|++||.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (680)
T PLN02312 1 MMAGMSPSAAARRAHVLANHLAQS 24 (680)
T ss_pred CCCccchhHHHHHHHHHHHhccCC
Confidence 6677875 569999999999664
No 127
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=45.63 E-value=86 Score=27.50 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEecCC
Q 030579 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
--++++.|.+|.+.+++.-++..-.+||..|..
T Consensus 118 ~~mtp~~w~~La~~I~~~~~~~~dGvVVtHGTD 150 (404)
T TIGR02153 118 ENMKPEYWIKIAEAVAKALKEGADGVVVAHGTD 150 (404)
T ss_pred hhCCHHHHHHHHHHHHHHhhcCCCcEEEecCCh
Confidence 348888999999888776544333666667665
No 128
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=44.61 E-value=92 Score=20.88 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=31.2
Q ss_pred EEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCC
Q 030579 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 71 v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
+.++. .+++.+|++..+ ++.+....+.+.+..+..++..+.|++--.+
T Consensus 5 i~~~~--~~~~~vi~~~G~-----l~~~~~~~~~~~l~~~~~~~~~~~vvidls~ 52 (108)
T TIGR00377 5 IETEV--QEGVVIVRLSGE-----LDAHTAPLLREKVTPAAERTGPRPIVLDLED 52 (108)
T ss_pred EEEEE--ECCEEEEEEecc-----cccccHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 45555 688999998864 4444456666666655544567888887655
No 129
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=44.38 E-value=90 Score=26.25 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhcCCCceEEEEec
Q 030579 100 VKELIRAFNDARDDSSVGVIILTG 123 (175)
Q Consensus 100 ~~eL~~al~~~~~d~~vkvvVltG 123 (175)
.+.+.+.++.+..|+++++|||.=
T Consensus 82 ~~~~~~~l~~~~~~~~vk~vvL~i 105 (317)
T COG0616 82 GDDIEEILRAARADPSVKAVVLRI 105 (317)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEE
Confidence 456677888899999999998853
No 130
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=44.08 E-value=47 Score=23.99 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=30.7
Q ss_pred EEEEEcCCCCCCCC--C----------HHHHHHHHHHHHHh--hcCCCceEEEEecCC
Q 030579 82 AKITINRPDRRNAF--R----------PHTVKELIRAFNDA--RDDSSVGVIILTGKG 125 (175)
Q Consensus 82 ~~ItLnrp~~~Nal--~----------~~~~~eL~~al~~~--~~d~~vkvvVltG~g 125 (175)
..|+.+-|.|...= + ..++.++.+.+... -+.++++.|||.|-|
T Consensus 26 ~~i~~~ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPG 83 (133)
T PF03464_consen 26 QRIESNIPGKHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVKCIIIAGPG 83 (133)
T ss_dssp EEEE-GHCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCSEEEEEEST
T ss_pred EEEEecCCCccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECCH
Confidence 34677778775431 1 35677777777776 667789999999987
No 131
>PRK14558 pyrH uridylate kinase; Provisional
Probab=42.88 E-value=99 Score=24.45 Aligned_cols=39 Identities=21% Similarity=0.409 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCC
Q 030579 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD 134 (175)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~D 134 (175)
-.++.+.+..+.+.+.++.+. ..+++|++|.| +|..|-.
T Consensus 18 ~~~~~~~i~~la~~i~~~~~~-g~~viiV~GgG--s~~~g~~ 56 (231)
T PRK14558 18 KGFDPERVNYLVNEIKSVVEY-GFKIGIVIGAG--NLFRGVE 56 (231)
T ss_pred CCcCHHHHHHHHHHHHHHHHC-CCeEEEEECcc--HHHHHHh
Confidence 469999999999999887643 46899999887 5655533
No 132
>smart00463 SMR Small MutS-related domain.
Probab=40.78 E-value=59 Score=21.05 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhhcCCC-ceEEEEecCC
Q 030579 97 PHTVKELIRAFNDARDDSS-VGVIILTGKG 125 (175)
Q Consensus 97 ~~~~~eL~~al~~~~~d~~-vkvvVltG~g 125 (175)
.+.+..|...++.+..... -.+.||+|.|
T Consensus 12 ~eA~~~l~~~l~~~~~~~~~~~~~II~G~G 41 (80)
T smart00463 12 EEALTALDKFLNNARLKGLEQKLVIITGKG 41 (80)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEccc
Confidence 3667788888888876654 4789999998
No 133
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=40.72 E-value=42 Score=21.95 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEecCC
Q 030579 97 PHTVKELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 97 ~~~~~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
.+....|.+.++.+.....-.+.||||.|
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G 37 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKG 37 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--ST
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccC
Confidence 35667788888888777667889999998
No 134
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=39.62 E-value=35 Score=25.80 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhcCCCceEEEEecCCC-CcccCCCCCC
Q 030579 100 VKELIRAFNDARDDSSVGVIILTGKGT-EAFCSGGDQA 136 (175)
Q Consensus 100 ~~eL~~al~~~~~d~~vkvvVltG~g~-~~FcaG~Dl~ 136 (175)
+..|...+..++.||++.-|-+|-..+ -..|||+-+.
T Consensus 27 C~~lk~ll~lveedp~i~~i~vtREEeg~GIcAGa~lA 64 (172)
T COG4032 27 CDNLKNLLPLVEEDPEIPEIPVTREEEGVGICAGAYLA 64 (172)
T ss_pred HHHHHhHHHHHhcCCCcccccccchhcceeeehhhhhc
Confidence 355677888899999999888887641 3359998765
No 135
>PRK14053 methyltransferase; Provisional
Probab=39.20 E-value=26 Score=27.41 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=44.0
Q ss_pred CCCEEEEEEcCCC---CCCCCCHHHHH---HHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCcccc
Q 030579 78 GEGIAKITINRPD---RRNAFRPHTVK---ELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTR 140 (175)
Q Consensus 78 ~~~V~~ItLnrp~---~~Nal~~~~~~---eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~ 140 (175)
+..|+++||..-- ..=|+...... -+...+..+-.||++|.+|++|...+.+-+|--|..+.+
T Consensus 21 ~S~VAVvTL~S~~~~~~gaAI~G~c~TENlGIEKvI~NvisNpNIRflilcG~Ev~GHltGqsL~aL~~ 89 (194)
T PRK14053 21 ESRIAVVTLASSIESFPEAAIWGSSKTENLGVEKIIVNVISNSNIRYVLLCGGESRGHLAGHSLLAIHA 89 (194)
T ss_pred CCcEEEEEccccccccCCceEEeeccccccCHHHHHHHhhcCCCceEEEEecCccCCccccHHHHHHHH
Confidence 6678888886531 11233333322 366788888899999999999998778888877766543
No 136
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=38.90 E-value=1.1e+02 Score=20.85 Aligned_cols=43 Identities=19% Similarity=0.327 Sum_probs=34.1
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCC--------ceEEEEecCC
Q 030579 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSS--------VGVIILTGKG 125 (175)
Q Consensus 78 ~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~--------vkvvVltG~g 125 (175)
.+++.+++++.| |+-....++.+.+..+..... ++.|||--.+
T Consensus 7 ~~~v~ii~~~g~-----l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~ 57 (117)
T PF01740_consen 7 HDGVLIIRLDGP-----LFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSG 57 (117)
T ss_dssp ETTEEEEEEESE-----ESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETT
T ss_pred ECCEEEEEEeeE-----EEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEe
Confidence 788999999987 777777888888877776554 7899998766
No 137
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=36.69 E-value=1.5e+02 Score=24.14 Aligned_cols=55 Identities=13% Similarity=0.260 Sum_probs=38.6
Q ss_pred CCcccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcc
Q 030579 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF 129 (175)
Q Consensus 66 ~~~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~F 129 (175)
+.|..|.+.. .+.++ .++..+-+|.++++.+...+.++.+. .+++.|+.|.| ..|
T Consensus 3 ~~~~rillkL--sGe~l-----~g~~~~gid~~~i~~~a~~i~~~~~~-g~eV~iVvGGG-ni~ 57 (238)
T COG0528 3 PKYMRILLKL--SGEAL-----AGEQGFGIDPEVLDRIANEIKELVDL-GVEVAVVVGGG-NIA 57 (238)
T ss_pred cceEEEEEEe--eccee-----cCCCCCCCCHHHHHHHHHHHHHHHhc-CcEEEEEECCC-HHH
Confidence 3455566655 34322 23334779999999999999999855 67998999988 454
No 138
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=35.82 E-value=27 Score=27.02 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=41.5
Q ss_pred CCCEEEEEEcCCCCC------CCCCHHHHH---HHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccc
Q 030579 78 GEGIAKITINRPDRR------NAFRPHTVK---ELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT 139 (175)
Q Consensus 78 ~~~V~~ItLnrp~~~------Nal~~~~~~---eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~ 139 (175)
+..|+++||..-... =|+...+.. -+...+..+-.||++|.+|++|...+..-+|--|..+.
T Consensus 21 ~S~VAV~TL~S~~~~~~l~~gaAI~G~~~TENlGIEKvI~NvisNpnIRflilcG~Ev~GH~~Gqsl~aLh 91 (176)
T PF04208_consen 21 ESPVAVCTLGSHLLQAPLDAGAAIAGPCKTENLGIEKVIANVISNPNIRFLILCGSEVKGHLTGQSLLALH 91 (176)
T ss_pred CCCEEEEECccccchhhhhcCceeeecccccccCHHHHHHHHhcCCCceEEEEecCccCCCcchHHHHHHH
Confidence 667888888653211 122222222 36778888889999999999999877777776665543
No 139
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=35.12 E-value=32 Score=27.68 Aligned_cols=63 Identities=11% Similarity=0.159 Sum_probs=44.0
Q ss_pred CCCEEEEEEcCCC-------CCCCCCHHHHH---HHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCcccc
Q 030579 78 GEGIAKITINRPD-------RRNAFRPHTVK---ELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTR 140 (175)
Q Consensus 78 ~~~V~~ItLnrp~-------~~Nal~~~~~~---eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~ 140 (175)
+..|+++||..-. ..=|+...+.. -+...+..+-.||++|.+|++|...+.+-+|--|..+.+
T Consensus 24 ~SpVAV~Tl~S~~~~~~~~~agaAi~G~~~TENlGIEKvI~NvisNpNIRflilcG~Ev~GH~tGqsl~aL~~ 96 (225)
T PRK00964 24 ESPVAVVTLGSHLLDQPIIDAGAAISGPCHTENLGIEKVIANVISNPNIRFLILCGSEVQGHITGQSLKALHE 96 (225)
T ss_pred CCceEEEEccccccccchhhcCceeecccccccccHHHHHHHHhcCCCceEEEEecCccCCccccHHHHHHHH
Confidence 6779999997532 12233333332 367788888899999999999998677777776665543
No 140
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=34.87 E-value=88 Score=24.98 Aligned_cols=36 Identities=19% Similarity=0.455 Sum_probs=28.2
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCC
Q 030579 87 NRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 87 nrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
..++....++.+.+++|.+.+..+. ..++|++.|.|
T Consensus 12 ~~~~~~~~~~~~~l~~l~~~l~~l~---g~~vvlVhGgg 47 (252)
T cd04241 12 TDKDRPETIREENLERIARELAEAI---DEKLVLVHGGG 47 (252)
T ss_pred EcCCCCCccCHHHHHHHHHHHHhcc---CCCEEEEECCC
Confidence 3444456799999999999988876 46889899877
No 141
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=34.86 E-value=93 Score=26.06 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEE-EEecCC
Q 030579 93 NAFRPHTVKELIRAFNDARDDSSVGVI-ILTGKG 125 (175)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~vkvv-VltG~g 125 (175)
.-++++.+.+|.+.+++.-++ +.++ |+.|..
T Consensus 52 ~~~t~~~~~~la~~i~~~~~~--~~GvVVtHGTD 83 (313)
T PF00710_consen 52 SDMTPEDWLELARAIQAALDD--YDGVVVTHGTD 83 (313)
T ss_dssp GG--HHHHHHHHHHHHHHHTT--CSEEEEE--ST
T ss_pred hhcCHHHHHHHHHHHHHHHHh--cCeEEEecCch
Confidence 459999999999999988844 5544 455544
No 142
>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=34.37 E-value=25 Score=30.91 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=17.5
Q ss_pred ccCCCCCCccccCCccchhhhhHhhHHHHHHHH
Q 030579 129 FCSGGDQALRTRDGYADYENFGRLNVLDLQVQI 161 (175)
Q Consensus 129 FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 161 (175)
||.|+||...-..-..-.....+.+++++..++
T Consensus 90 yC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~al 122 (429)
T KOG0595|consen 90 YCNGGDLSDYIRRRGRLPEATARHFMQQLASAL 122 (429)
T ss_pred eCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 799999986543222222333444445544443
No 143
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=34.26 E-value=1.5e+02 Score=26.08 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEecCC
Q 030579 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
--++++.|.+|.+.+++.-++.--.+||..|..
T Consensus 131 ~~mtp~~W~~La~~I~~~~~~~~dGvVVtHGTD 163 (419)
T PRK04183 131 ENMTPEYWVEIAEAVYEEIKNGADGVVVAHGTD 163 (419)
T ss_pred hhCCHHHHHHHHHHHHHHhhccCCeEEEecCCc
Confidence 458899999999988876554333556666655
No 144
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=34.26 E-value=61 Score=29.50 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=35.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCC
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD 134 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~D 134 (175)
++.|+-|. |=||.++++.|.++|..+. .+||+-+.. +.|+...-
T Consensus 460 vLiLDEPT--NhLDi~s~~aLe~aL~~f~-----Gtvl~VSHD-r~Fl~~va 503 (530)
T COG0488 460 LLLLDEPT--NHLDIESLEALEEALLDFE-----GTVLLVSHD-RYFLDRVA 503 (530)
T ss_pred EEEEcCCC--ccCCHHHHHHHHHHHHhCC-----CeEEEEeCC-HHHHHhhc
Confidence 46678885 9999999999999999985 567777777 89977654
No 145
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=34.14 E-value=1.6e+02 Score=25.45 Aligned_cols=52 Identities=17% Similarity=0.168 Sum_probs=34.9
Q ss_pred cEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCC
Q 030579 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 70 ~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
++.+.. .++-..+.|+..+..|...+..-.-+..+-+.+.. ++-+|||||.|
T Consensus 235 hl~v~~--~~g~~~~~l~~~~~~~~~rPsvDvlF~S~A~~~~~--~~~~viLTGmG 286 (350)
T COG2201 235 HLEVSR--SGGNYRLKLTDGPPVNGHRPSVDVLFRSVAELYGS--NALGVILTGMG 286 (350)
T ss_pred eEEEEe--cCCeeEEEeCCCCCCCCcCCChhHHHHHHHHHcCC--CEEEEEEecCC
Confidence 455555 55557788887777787776554444445444433 58899999999
No 146
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=33.83 E-value=1.7e+02 Score=25.19 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEE-EecCC
Q 030579 93 NAFRPHTVKELIRAFNDARDDSSVGVII-LTGKG 125 (175)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~vkvvV-ltG~g 125 (175)
.-++++.|.+|.+.+++.-.++++-+|| ..|..
T Consensus 78 ~~m~~~~w~~la~~I~~~~~~~~~dGvVItHGTD 111 (351)
T COG0252 78 SDMTPEDWLRLAEAINEALDDGDVDGVVITHGTD 111 (351)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCeEEEeCCCc
Confidence 5699999999999999887776645444 55544
No 147
>TIGR01111 mtrA N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit A. coenzyme M methyltransferase subunit A in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.
Probab=33.82 E-value=35 Score=27.55 Aligned_cols=63 Identities=10% Similarity=0.131 Sum_probs=43.7
Q ss_pred CCCEEEEEEcCCCC-------CCCCCHHHHH---HHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCcccc
Q 030579 78 GEGIAKITINRPDR-------RNAFRPHTVK---ELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTR 140 (175)
Q Consensus 78 ~~~V~~ItLnrp~~-------~Nal~~~~~~---eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~ 140 (175)
+..|+++||..-.. .=|+...... -+...+..+-.||++|.+|++|...+.+-+|--|..+.+
T Consensus 24 ~SpVAV~TL~Sh~~~~~i~~agaAI~G~~~TENlGIEKvIaNvisNpNIRflilcG~Ev~GHltGqsL~aLh~ 96 (238)
T TIGR01111 24 ESPVLVVTLGSHIEEQIILDAGAAIAGPCKTENLGIEKVVANIISNPNIRFLILCGSEVQGHITGQSFKALHE 96 (238)
T ss_pred CCceEEEEccccccccchhhcCceeeccccccccCHHHHHHHHhcCCCceEEEEecCcccCccccHHHHHHHH
Confidence 67788888875321 1223222222 367788888899999999999998778888877765543
No 148
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=33.78 E-value=1.5e+02 Score=19.90 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=31.7
Q ss_pred EEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCccc
Q 030579 73 YEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130 (175)
Q Consensus 73 ~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~Fc 130 (175)
++. .+++.++.+..+ ++-.-.+++.+.+..+-.....+.+||.-.+ =.|+
T Consensus 3 ~~~--~~~~~vi~l~G~-----L~f~~~~~~~~~l~~~~~~~~~~~vilDls~-v~~i 52 (106)
T TIGR02886 3 FEV--KGDVLIVRLSGE-----LDHHTAERVRRKIDDAIERRPIKHLILNLKN-VTFM 52 (106)
T ss_pred EEE--ECCEEEEEEecc-----cchhhHHHHHHHHHHHHHhCCCCEEEEECCC-CcEe
Confidence 455 678999999775 4445556666666554333457888887666 3443
No 149
>PRK11778 putative inner membrane peptidase; Provisional
Probab=32.95 E-value=1.8e+02 Score=24.81 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=12.7
Q ss_pred HHHHhcCCCcEEEEeeC
Q 030579 158 QVQIRRLPKPVIAMVHL 174 (175)
Q Consensus 158 ~~~i~~~~kPvIAaV~G 174 (175)
..++....||+|+.+++
T Consensus 147 l~~lr~~~kpVva~v~~ 163 (330)
T PRK11778 147 LQRLRDAGIPLTVAVDK 163 (330)
T ss_pred HHHHHhcCCCEEEEECC
Confidence 34466778999998875
No 150
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=32.52 E-value=60 Score=29.69 Aligned_cols=42 Identities=21% Similarity=0.442 Sum_probs=31.6
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCC
Q 030579 84 ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGG 133 (175)
Q Consensus 84 ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~ 133 (175)
|.|+-| -|-||.+.+..|..++..++ .+||+-+.. .-|..+.
T Consensus 504 LVLDEP--TNhLD~dsl~AL~~Al~~F~-----GGVv~VSHd-~~fi~~~ 545 (582)
T KOG0062|consen 504 LVLDEP--TNHLDRDSLGALAKALKNFN-----GGVVLVSHD-EEFISSL 545 (582)
T ss_pred EEecCC--CccccHHHHHHHHHHHHhcC-----CcEEEEECc-HHHHhhc
Confidence 555666 39999999999999999996 455655555 5676664
No 151
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=32.17 E-value=2.2e+02 Score=24.14 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEecCC
Q 030579 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
.-++++-+.+|.+.+++.. ++--.+||..|..
T Consensus 61 s~mt~~~w~~la~~I~~~~-~~~dG~VVtHGTD 92 (335)
T PRK09461 61 SDMTPEDWQHIADDIKANY-DDYDGFVILHGTD 92 (335)
T ss_pred ccCCHHHHHHHHHHHHHHh-ccCCeEEEeeccc
Confidence 4689999999999997754 2223555566654
No 152
>TIGR02832 spo_yunB sporulation protein YunB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. Mutation of this sigma E-regulated gene, designated yunB, has been shown to cause a sporulation defect.
Probab=32.03 E-value=33 Score=27.23 Aligned_cols=47 Identities=19% Similarity=0.240 Sum_probs=39.1
Q ss_pred CCCccc-EEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhc
Q 030579 65 GTEFTD-IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARD 112 (175)
Q Consensus 65 ~~~~~~-v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~ 112 (175)
..+|++ +.++++.+|.|..+.+|-. +.|.+-.++..++.+.|.+++.
T Consensus 60 ~~~y~dlI~i~kd~~G~I~~iq~nT~-~~N~i~s~~~~~vq~~L~~l~~ 107 (204)
T TIGR02832 60 GFDYNDLIEIETDENGKITLIQANTL-LLNKLASNITLRVQEKLNELGE 107 (204)
T ss_pred CCCHHHEEEEEECCCCcEEEEEcCHH-HHHHHHHHHHHHHHHHHHHhhc
Confidence 345554 7888886778999999987 5799999999999999999975
No 153
>PF06935 DUF1284: Protein of unknown function (DUF1284); InterPro: IPR009702 This family consists of several hypothetical bacterial and archaeal proteins of around 130 residues in length. The function of this family is unknown, although it is thought that they may be iron-sulphur binding proteins.
Probab=31.97 E-value=80 Score=22.00 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEecCC
Q 030579 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
.+++|.+-|.+.++.++++++..+-|++|..
T Consensus 2 YS~~Fv~Nm~~Iv~~l~~~~~~~I~iv~~~D 32 (103)
T PF06935_consen 2 YSPEFVENMKKIVERLRNDPGEPIEIVDGPD 32 (103)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEEECcC
Confidence 4789999999999999888888888888854
No 154
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=31.12 E-value=70 Score=26.40 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCC
Q 030579 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSG 132 (175)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG 132 (175)
.++.-+++|.+.++..+ ++|||||+| =+=.+|
T Consensus 4 ~~~~~l~~l~~~i~~~~-----~ivvlTGAG-iS~~SG 35 (285)
T PRK05333 4 ADPAALDALQDFVERHP-----RLFVLTGAG-ISTDSG 35 (285)
T ss_pred ccHHHHHHHHHHHHhCC-----cEEEEeCCc-cccccC
Confidence 45666667766665421 799999998 444444
No 155
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=30.58 E-value=75 Score=26.94 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=30.4
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEec
Q 030579 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (175)
Q Consensus 78 ~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG 123 (175)
.+....+|+++.+ |.-+++.+.++.++++.+...+++.+|+...
T Consensus 179 ~~~~iLvt~H~~t--~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~h 222 (346)
T PF02350_consen 179 PKPYILVTLHPVT--NEDNPERLEQILEALKALAERQNVPVIFPLH 222 (346)
T ss_dssp TSEEEEEE-S-CC--CCTHH--HHHHHHHHHHHHHHTTEEEEEE--
T ss_pred CCCEEEEEeCcch--hcCChHHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 6778889999986 5555888888889998888777777777766
No 156
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=30.57 E-value=3.9e+02 Score=23.81 Aligned_cols=68 Identities=22% Similarity=0.292 Sum_probs=45.8
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHH
Q 030579 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (175)
Q Consensus 78 ~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 157 (175)
++.|.+|.++. .+++.+.+.+.+.++.++++.. -++||.=.-+.. ....+.++
T Consensus 25 ~~~v~vi~i~g-----~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPGG---------------------l~~sm~~i 77 (436)
T COG1030 25 EKKVYVIEIDG-----AIDPASADYLQRALQSAEEENA-AAVVLELDTPGG---------------------LLDSMRQI 77 (436)
T ss_pred CCeEEEEEecC-----ccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCCc---------------------hHHHHHHH
Confidence 55666677764 5999999999999999987652 334432211110 11135677
Q ss_pred HHHHhcCCCcEEEEe
Q 030579 158 QVQIRRLPKPVIAMV 172 (175)
Q Consensus 158 ~~~i~~~~kPvIAaV 172 (175)
..+|...+.|++..|
T Consensus 78 v~~i~~s~vPV~~yv 92 (436)
T COG1030 78 VRAILNSPVPVIGYV 92 (436)
T ss_pred HHHHHcCCCCEEEEE
Confidence 888999999988765
No 157
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=30.56 E-value=85 Score=28.79 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=18.6
Q ss_pred hhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 152 LNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 152 ~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.++......+.++..|+|++||=+
T Consensus 359 ~NL~RHIenvr~FGvPvVVAINKF 382 (557)
T PRK13505 359 ANLERHIENIRKFGVPVVVAINKF 382 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCC
Confidence 345566777889999999999843
No 158
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=30.36 E-value=86 Score=24.68 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEecCC
Q 030579 98 HTVKELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 98 ~~~~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
.+..++.++|+.+..++...+.|++|..
T Consensus 19 ~~~~~~~~~L~~La~~~~~~v~IvSGR~ 46 (235)
T PF02358_consen 19 VPPPELRELLRALAADPNNTVAIVSGRS 46 (235)
T ss_dssp ---HHHHHHHHHHHHHSE--EEEE-SS-
T ss_pred CCCHHHHHHHHHHhccCCCEEEEEEeCC
Confidence 4456788888899989888899999976
No 159
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=30.08 E-value=1.9e+02 Score=24.79 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEec
Q 030579 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (175)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~vkvvVltG 123 (175)
--++++.+.+|.+.+++.-.++++.++|+|-
T Consensus 83 ~~mt~~dw~~la~~I~~~~~~~~~~GiVVtH 113 (349)
T TIGR00520 83 QDMNEEVLLKLAKGINELLASDDYDGIVITH 113 (349)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 4588999999999988776666655555554
No 160
>PLN02636 acyl-coenzyme A oxidase
Probab=29.81 E-value=56 Score=30.66 Aligned_cols=17 Identities=41% Similarity=0.561 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhccccCC
Q 030579 7 SARRRMTAVANHLVPVI 23 (175)
Q Consensus 7 ~~~~r~~~i~~hl~~~~ 23 (175)
.+.|||.+|++||.+..
T Consensus 16 ~~~~~~~~~~~~~~~~~ 32 (686)
T PLN02636 16 IAARRIQRLSLHLSPVP 32 (686)
T ss_pred HHHHHHHHHHHhcCcCC
Confidence 36799999999996664
No 161
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=29.02 E-value=77 Score=21.75 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEec
Q 030579 95 FRPHTVKELIRAFNDARDDSSVGVIILTG 123 (175)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~~vkvvVltG 123 (175)
|+.+-..+|.+.++.++....+.++|++-
T Consensus 2 Ls~~~~~~l~~~l~~~~~~t~~~i~Vvtv 30 (119)
T PF04536_consen 2 LSQEERERLNQALAKLEKKTGVQIVVVTV 30 (119)
T ss_dssp S-HHHHHHHHHHHHHHHHHC--EEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhhCCEEEEEEE
Confidence 67788888888888888877777766653
No 162
>PF04439 Adenyl_transf: Streptomycin adenylyltransferase; InterPro: IPR007530 Also known as aminoglycoside 6-adenylyltransferase (2.7.7 from EC), this protein confers resistance to aminoglycoside antibiotics.; PDB: 2PBE_A.
Probab=28.97 E-value=58 Score=27.03 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=12.3
Q ss_pred HHHHHhhcCCCceEEEEecCC
Q 030579 105 RAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 105 ~al~~~~~d~~vkvvVltG~g 125 (175)
..++-+.+|++||+|+++|..
T Consensus 10 ~Il~~A~~d~rIraV~l~GSR 30 (282)
T PF04439_consen 10 LILEFAKQDERIRAVILNGSR 30 (282)
T ss_dssp HHHHHHHH-TTEEEEEE----
T ss_pred HHHHHHhcCCcEEEEEEecCC
Confidence 444555689999999999975
No 163
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=28.71 E-value=1.1e+02 Score=26.36 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=30.7
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEE--ecCCCCcc
Q 030579 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL--TGKGTEAF 129 (175)
Q Consensus 79 ~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVl--tG~g~~~F 129 (175)
++|++|.| +.|+.....++.++|+.++.. .++.+|| ++.+++.+
T Consensus 194 ~~IgYi~i------~~F~~~~~~~~~~~l~~l~~~-~~~glIlDLR~N~GG~~ 239 (389)
T PLN00049 194 PKIGYIKL------TTFNQNASSAVKEAIETLRAN-GVDAFVLDLRDNSGGLF 239 (389)
T ss_pred CCEEEEEe------ccccchhHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCCH
Confidence 46777777 446667788999999999754 4788887 44443333
No 164
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=28.70 E-value=1.2e+02 Score=24.65 Aligned_cols=41 Identities=24% Similarity=0.395 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEE--ecCC
Q 030579 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL--TGKG 125 (175)
Q Consensus 78 ~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVl--tG~g 125 (175)
+++|++|.++. |.....++|.++++.++.. .++.+|| ++.+
T Consensus 63 ~~~IGYi~i~~------F~~~~~~~l~~a~~~l~~~-~~~~LIlDLR~N~ 105 (256)
T cd07561 63 GKKVGYLVYNS------FTSGYDDELNQAFAEFKAQ-GVTELVLDLRYNG 105 (256)
T ss_pred CCcEEEEEECc------cccchHHHHHHHHHHHHHc-CCCeEEEEeCCCC
Confidence 78899999875 5555788999999999854 5787886 5555
No 165
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=28.61 E-value=25 Score=18.71 Aligned_cols=19 Identities=16% Similarity=0.385 Sum_probs=10.9
Q ss_pred eEEEEecCCCCcccCCCCCCc
Q 030579 117 GVIILTGKGTEAFCSGGDQAL 137 (175)
Q Consensus 117 kvvVltG~g~~~FcaG~Dl~~ 137 (175)
|.+|+.+. -+|+.|+|+..
T Consensus 8 K~~vvD~~--~a~vGg~nl~~ 26 (28)
T PF00614_consen 8 KFVVVDDR--VAFVGGANLCD 26 (28)
T ss_dssp -EEEETTT--EEEEE---SSH
T ss_pred EEEEEcCC--EEEECceecCC
Confidence 67777765 48999999853
No 166
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=28.37 E-value=68 Score=27.02 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhcCCCceEEEEecCC
Q 030579 101 KELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 101 ~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
+++.++++.++.+++++-||||| |
T Consensus 128 ~~~~~~i~~i~~~~~i~~VvltG-G 151 (321)
T TIGR03821 128 AQWKEALEYIAQHPEINEVILSG-G 151 (321)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeC-c
Confidence 56667777788788999999999 5
No 167
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine.
Probab=28.00 E-value=56 Score=25.23 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCc
Q 030579 97 PHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQAL 137 (175)
Q Consensus 97 ~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~ 137 (175)
.++.+.+.++++ +.++.+++++.+.| .|+.|-|+.+
T Consensus 137 ~ela~~~~~~l~---~~~~~~avll~nHG--v~~~G~~~~~ 172 (193)
T TIGR03328 137 ARLADSVAPYLE---AYPDVPGVLIRGHG--LYAWGRDWEE 172 (193)
T ss_pred HHHHHHHHHHHh---cCCCCCEEEEcCCc--ceEEcCCHHH
Confidence 444444444443 23567899999998 8999988864
No 168
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=27.76 E-value=1.7e+02 Score=22.24 Aligned_cols=37 Identities=16% Similarity=0.415 Sum_probs=26.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEec
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG 123 (175)
.+-|+-|- +.+|.....++.+.+.++..+ .. .||+..
T Consensus 155 llllDEPt--~~LD~~~~~~~~~~l~~~~~~-~~-tvi~~s 191 (211)
T cd03225 155 ILLLDEPT--AGLDPAGRRELLELLKKLKAE-GK-TIIIVT 191 (211)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHc-CC-EEEEEe
Confidence 46677774 789999999999988888654 33 344443
No 169
>PF12268 DUF3612: Protein of unknown function (DUF3612); InterPro: IPR022055 This domain family is found in bacteria, and is approximately 180 amino acids in length. The family is found in association with PF01381 from PFAM.
Probab=27.54 E-value=35 Score=25.91 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=18.3
Q ss_pred CceEEEEecCCCCcccCCCCCCcc
Q 030579 115 SVGVIILTGKGTEAFCSGGDQALR 138 (175)
Q Consensus 115 ~vkvvVltG~g~~~FcaG~Dl~~~ 138 (175)
++++.=+.|.. ...|+|.||...
T Consensus 79 Si~v~D~Agn~-hVLCaGIDLNPA 101 (178)
T PF12268_consen 79 SIKVKDLAGNN-HVLCAGIDLNPA 101 (178)
T ss_pred ccccccCCCCc-eeEEecccCCHh
Confidence 46677778887 899999999843
No 170
>PRK06357 hypothetical protein; Provisional
Probab=26.32 E-value=75 Score=25.16 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCCcc
Q 030579 96 RPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138 (175)
Q Consensus 96 ~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~ 138 (175)
+.++.+++.++++...+.+..++++|.+-| .+|.|-|+.+-
T Consensus 141 s~ela~~v~~~l~~~~~~~~~~~vLl~nHG--vv~~G~~l~eA 181 (216)
T PRK06357 141 SPELAEIVRKHLIELGDKAVPSAFLLNSHG--IVITDTSLHKA 181 (216)
T ss_pred cHHHHHHHHHHHhhcCcccCCCEEEECCCC--CeEecCCHHHH
Confidence 355566666655543222233689999888 89999988753
No 171
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=25.92 E-value=73 Score=22.60 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhcCCCceEEEEecC
Q 030579 101 KELIRAFNDARDDSSVGVIILTGK 124 (175)
Q Consensus 101 ~eL~~al~~~~~d~~vkvvVltG~ 124 (175)
++|.+.++.+.+|++|.+|++.--
T Consensus 73 ~el~~~i~~lN~D~~V~GIlvq~P 96 (117)
T PF00763_consen 73 EELLELIEKLNEDPSVHGILVQLP 96 (117)
T ss_dssp HHHHHHHHHHHH-TT-SEEEEESS
T ss_pred HHHHHHHHHHhCCCCCCEEEEcCC
Confidence 688899999999999999998743
No 172
>PLN02287 3-ketoacyl-CoA thiolase
Probab=25.75 E-value=58 Score=28.88 Aligned_cols=39 Identities=26% Similarity=0.360 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhhhccccCCcCCCCCC--cccccCCCCCCccccc
Q 030579 5 IDSARRRMTAVANHLVPVISSDSNSG--FIGLNNASMNDSYHRI 46 (175)
Q Consensus 5 ~~~~~~r~~~i~~hl~~~~~~~~~~~--~~~~~~~~~~~sy~~~ 46 (175)
|++++.|-..+-.||-|+ ++.++ +...+......-||+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 41 (452)
T PLN02287 1 MEKAINRQRVLLRHLRPS---SSEPSSLSASACAAGDSAAYHRT 41 (452)
T ss_pred CchHHHHHHHHHhhccCC---CCCccccccccccccchhhhccc
Confidence 789999999999999665 33333 3333444555556664
No 173
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=25.64 E-value=1.9e+02 Score=22.10 Aligned_cols=40 Identities=15% Similarity=0.321 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCC
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
.+-|+-|- +.+|.....++.+.+.++..+.. +.||+++..
T Consensus 161 lllLDEP~--~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~ 200 (218)
T cd03255 161 IILADEPT--GNLDSETGKEVMELLRELNKEAG-TTIVVVTHD 200 (218)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHhcC-CeEEEEECC
Confidence 46677774 89999999999999998865333 345555443
No 174
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=25.39 E-value=2.1e+02 Score=21.24 Aligned_cols=38 Identities=26% Similarity=0.499 Sum_probs=28.9
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEe
Q 030579 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122 (175)
Q Consensus 82 ~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVlt 122 (175)
..+-++-|+ +.|.+.+...|.+.|..+.. ..+.+++-|
T Consensus 259 ~illiDEpE--~~LHp~~q~~l~~~l~~~~~-~~~QviitT 296 (303)
T PF13304_consen 259 SILLIDEPE--NHLHPSWQRKLIELLKELSK-KNIQVIITT 296 (303)
T ss_dssp SEEEEESSS--TTSSHHHHHHHHHHHHHTGG-GSSEEEEEE
T ss_pred eEEEecCCc--CCCCHHHHHHHHHHHHhhCc-cCCEEEEeC
Confidence 347788898 79999999999999987765 345554444
No 175
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=25.27 E-value=2e+02 Score=22.10 Aligned_cols=40 Identities=5% Similarity=0.163 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCC
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
.+-|+-|- +.+|.....++.+.+..+..+.. +.||+....
T Consensus 162 illlDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tii~~tH~ 201 (221)
T TIGR02211 162 LVLADEPT--GNLDNNNAKIIFDLMLELNRELN-TSFLVVTHD 201 (221)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCC
Confidence 46677774 89999999999999998865434 344444433
No 176
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=25.21 E-value=1.1e+02 Score=26.38 Aligned_cols=37 Identities=16% Similarity=0.350 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCC
Q 030579 92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSG 132 (175)
Q Consensus 92 ~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG 132 (175)
...++...+++|.+.++.-. .=++|||||+| =+-.+|
T Consensus 9 ~~~~~~~~l~~la~~I~~~~---ak~IVvlTGAG-ISteSG 45 (349)
T PTZ00410 9 EHVVGEPTFEGLARYIERNN---VTKILVMVGAG-ISVAAG 45 (349)
T ss_pred hhccchHHHHHHHHHHHhcC---CCCEEEEECcc-cccccC
Confidence 44566666766666654321 12799999999 555555
No 177
>COG3356 Predicted membrane protein [Function unknown]
Probab=25.17 E-value=5.5e+02 Score=23.76 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=40.0
Q ss_pred cccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCC
Q 030579 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSG 132 (175)
Q Consensus 68 ~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG 132 (175)
-..+.++.+ +...++|.++. |-++.++.+++.+++.++ -+ .++|.|-. ..+|.|
T Consensus 434 i~a~v~d~g-~~Rta~Vl~Ds----NNi~~~L~~~v~~~v~~l-v~---~veV~TTD--tH~vn~ 487 (578)
T COG3356 434 IRAAVVDTG-DTRTAYVLFDS----NNITTELREEVRKAVRDL-VS---EVEVVTTD--THYVNG 487 (578)
T ss_pred eEEEEEecC-CeEEEEEEEeC----CCCcHHHHHHHHHHHHhh-hc---EEEEEecC--Cceecc
Confidence 345667664 55577777775 779999999999999988 33 66777765 488887
No 178
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=25.12 E-value=77 Score=21.42 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhcCCCceEEEEec
Q 030579 100 VKELIRAFNDARDDSSVGVIILTG 123 (175)
Q Consensus 100 ~~eL~~al~~~~~d~~vkvvVltG 123 (175)
-+++.++|.++-.++++.+|+++-
T Consensus 27 ~ee~~~~l~~l~~~~~~gIIii~e 50 (95)
T PF01990_consen 27 PEEAEEALKELLKDEDVGIIIITE 50 (95)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEH
T ss_pred HHHHHHHHHHHhcCCCccEEEeeH
Confidence 467888899998888999999984
No 179
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=24.98 E-value=2.3e+02 Score=23.63 Aligned_cols=46 Identities=28% Similarity=0.343 Sum_probs=25.6
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCC
Q 030579 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126 (175)
Q Consensus 79 ~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~ 126 (175)
++-.++.+..+++.+..++. ++.|-..+...- ....-+|||+|.|+
T Consensus 249 ~~~~~~~l~~~~~~~~~~p~-id~~f~s~a~~~-~~~~~~vilsG~g~ 294 (354)
T PRK00742 249 GANYRIKLDDGPPVNRHRPS-VDVLFRSAAKAA-GRNALGVILTGMGR 294 (354)
T ss_pred CCceEEEECCCCCcCCCCCC-HHHHHHHHHHHh-CCCEEEEECCcCCh
Confidence 33345666666666666642 333333333222 23677899999983
No 180
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=24.97 E-value=2.2e+02 Score=22.29 Aligned_cols=40 Identities=8% Similarity=0.179 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCC
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
.+-|+.|. +.+|....+++.+.+.++..+.. +.||++...
T Consensus 174 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tiiivsH~ 213 (236)
T cd03267 174 ILFLDEPT--IGLDVVAQENIRNFLKEYNRERG-TTVLLTSHY 213 (236)
T ss_pred EEEEcCCC--CCCCHHHHHHHHHHHHHHHhcCC-CEEEEEecC
Confidence 56777774 89999999999999998865433 345555544
No 181
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.90 E-value=1.9e+02 Score=22.50 Aligned_cols=39 Identities=10% Similarity=0.227 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEec
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG 123 (175)
.+-|+.|. +.+|.....+|.+.+.++.......+++++-
T Consensus 151 llllDEP~--~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh 189 (232)
T cd03300 151 VLLLDEPL--GALDLKLRKDMQLELKRLQKELGITFVFVTH 189 (232)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 46677774 8999999999999999987543444444443
No 182
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=24.84 E-value=2.6e+02 Score=23.71 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEecCC
Q 030579 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
.-++++-|.+|.+.+++.-++ --.+||+.|..
T Consensus 57 s~~tp~~w~~la~~I~~~~~~-~dG~VVtHGTD 88 (336)
T TIGR00519 57 ENMKPEYWVEIAEAVKKEYDD-YDGFVITHGTD 88 (336)
T ss_pred ccCCHHHHHHHHHHHHHHHhc-CCeEEEccCCc
Confidence 348999999999988765444 23566666665
No 183
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=24.79 E-value=1.9e+02 Score=26.40 Aligned_cols=24 Identities=17% Similarity=0.247 Sum_probs=18.4
Q ss_pred hhHHHHHHHHhcCCCcEEEEeeCC
Q 030579 152 LNVLDLQVQIRRLPKPVIAMVHLP 175 (175)
Q Consensus 152 ~~~~~~~~~i~~~~kPvIAaV~G~ 175 (175)
.++..-...+..+..|+|.+||-+
T Consensus 343 ~NL~~Hi~n~~~fg~p~VVaiN~F 366 (524)
T cd00477 343 ANLRKHIENIKKFGVPVVVAINKF 366 (524)
T ss_pred HHHHHHHHHHHHcCCCeEEEecCC
Confidence 345555677889999999999853
No 184
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=23.65 E-value=2.6e+02 Score=20.50 Aligned_cols=38 Identities=21% Similarity=0.482 Sum_probs=27.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecC
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~ 124 (175)
.|-|+.| .+.+|.+..+.+.+.+.++... .. .+|++..
T Consensus 103 illlDEP--~~~LD~~~~~~l~~~l~~~~~~-~~-tiii~sh 140 (163)
T cd03216 103 LLILDEP--TAALTPAEVERLFKVIRRLRAQ-GV-AVIFISH 140 (163)
T ss_pred EEEEECC--CcCCCHHHHHHHHHHHHHHHHC-CC-EEEEEeC
Confidence 4566777 4899999999999999988643 33 4444443
No 185
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=23.55 E-value=2.2e+02 Score=21.96 Aligned_cols=39 Identities=10% Similarity=0.201 Sum_probs=27.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEec
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG 123 (175)
.+-|+-|- +.+|......+.+.+.++..+....+|+++-
T Consensus 167 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 205 (228)
T PRK10584 167 VLFADEPT--GNLDRQTGDKIADLLFSLNREHGTTLILVTH 205 (228)
T ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 56677774 8999999999999999886543333444443
No 186
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=23.53 E-value=1e+02 Score=25.15 Aligned_cols=54 Identities=24% Similarity=0.300 Sum_probs=40.3
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCCCC
Q 030579 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136 (175)
Q Consensus 79 ~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~Dl~ 136 (175)
.+|.++.=|-....|.+.. .+++|...+..+++-++++|-+=|= -.|.+|.|+.
T Consensus 138 k~V~ivlEnMAGqGn~vG~-tfeelk~ii~~Ikdk~RigVClDTC---H~FaaGyDI~ 191 (281)
T KOG3997|consen 138 KNVIIVLENMAGQGNSVGG-TFEELKFIIGKIKDKSRIGVCLDTC---HTFAAGYDIR 191 (281)
T ss_pred cceEEEeecccCCCCcccc-cHHHHHHHHHhhcchhhheeeHhhh---hhhccccccc
Confidence 4455555566777898876 5688999999998777777666553 4799999986
No 187
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.48 E-value=2.1e+02 Score=21.86 Aligned_cols=38 Identities=16% Similarity=0.306 Sum_probs=26.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEe
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVlt 122 (175)
.+-|+.|- +.+|.....++.+.+.++.......+|+++
T Consensus 152 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tiii~s 189 (214)
T cd03297 152 LLLLDEPF--SALDRALRLQLLPELKQIKKNLNIPVIFVT 189 (214)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcCcEEEEEe
Confidence 46667774 899999999999999888653233344444
No 188
>PRK03195 hypothetical protein; Provisional
Probab=23.21 E-value=1.8e+02 Score=22.76 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=34.4
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHH-HHHHHHHHHhhcCCCceEEEEecCCCCcccCC
Q 030579 78 GEGIAKITINRPDRRNAFRPHTV-KELIRAFNDARDDSSVGVIILTGKGTEAFCSG 132 (175)
Q Consensus 78 ~~~V~~ItLnrp~~~Nal~~~~~-~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG 132 (175)
++++++|..+.+. -+-...++ .+|.+.|++.-.+.-|+-|+|.|-....|--|
T Consensus 119 ~~gvL~V~~~Ssa--WAteL~~~k~~Ii~rLN~~lG~~vV~~I~i~GP~~psw~~g 172 (186)
T PRK03195 119 NDGVLSVSAESTA--WATQLRMMQAQLLAKIAAAVGDGVVTSLKITGPAAPSWRKG 172 (186)
T ss_pred ECCEEEEEeCCHH--HHHHHHhhHHHHHHHHHHHhCccceeEEEEeCCCCCCCCcC
Confidence 6899999999863 11112122 24455555555667799999999765666555
No 189
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.14 E-value=2.2e+02 Score=21.64 Aligned_cols=38 Identities=18% Similarity=0.366 Sum_probs=26.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEe
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVlt 122 (175)
.+-|+.|. +.+|.....++.+.+.++..+....+|++|
T Consensus 149 llllDEP~--~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 186 (211)
T cd03298 149 VLLLDEPF--AALDPALRAEMLDLVLDLHAETKMTVLMVT 186 (211)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 46677774 889999999999999888643333344444
No 190
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=23.07 E-value=73 Score=25.70 Aligned_cols=17 Identities=35% Similarity=0.278 Sum_probs=13.7
Q ss_pred eEEEEecCCCCcccCCCC
Q 030579 117 GVIILTGKGTEAFCSGGD 134 (175)
Q Consensus 117 kvvVltG~g~~~FcaG~D 134 (175)
++||+||+| =+-.+|..
T Consensus 13 ~ivv~tGAG-iS~~SGIp 29 (244)
T PRK14138 13 LTVTLTGAG-ISTPSGIP 29 (244)
T ss_pred CEEEEECcc-cchhhCCC
Confidence 689999999 67777754
No 191
>PRK14556 pyrH uridylate kinase; Provisional
Probab=23.04 E-value=1.7e+02 Score=23.89 Aligned_cols=55 Identities=11% Similarity=0.243 Sum_probs=38.9
Q ss_pred cccEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccC
Q 030579 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCS 131 (175)
Q Consensus 68 ~~~v~~e~~~~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~Fca 131 (175)
|+.|.+.. .+.+ |. +++.+-+|.+.+.++.+.+..+.+. .+++.|+.|.| ..|..
T Consensus 15 ~~rvllKl--sGe~----l~-~~~~~~~d~~~~~~~a~~i~~~~~~-g~~i~iVvGGG-ni~Rg 69 (249)
T PRK14556 15 LKRILLKL--SGES----LS-ADQGFGINVESAQPIINQIKTLTNF-GVELALVVGGG-NILRG 69 (249)
T ss_pred hCEEEEEE--ehhh----Cc-CCCCCCcCHHHHHHHHHHHHHHHhC-CcEEEEEECCC-HHHhC
Confidence 55566654 3332 22 3344679999999999999998754 57999999988 66663
No 192
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=22.88 E-value=4.3e+02 Score=21.89 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcc
Q 030579 96 RPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF 129 (175)
Q Consensus 96 ~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~F 129 (175)
..++++++.++++.+.+..=.-++-....| +.|
T Consensus 125 e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg-~~~ 157 (265)
T COG1830 125 EREMIENISQVVEDAHELGMPLVAWAYPRG-PAI 157 (265)
T ss_pred hHHHHHHHHHHHHHHHHcCCceEEEEeccC-Ccc
Confidence 489999999999999876433334356666 555
No 193
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=22.88 E-value=2.4e+02 Score=21.47 Aligned_cols=39 Identities=13% Similarity=0.307 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCC
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
.+-|+-|- +.+|.....++.+.+.++.. .. +.||+.+..
T Consensus 153 llllDEPt--~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~sH~ 191 (213)
T cd03235 153 LLLLDEPF--AGVDPKTQEDIYELLRELRR-EG-MTILVVTHD 191 (213)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHh-cC-CEEEEEeCC
Confidence 46667774 89999999999999998864 33 345555443
No 194
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=22.77 E-value=2.4e+02 Score=20.95 Aligned_cols=39 Identities=8% Similarity=0.197 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecC
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~ 124 (175)
.+-|+.|- +.+|.+....+.+.+.++..+... .+|++..
T Consensus 118 llllDEP~--~~LD~~~~~~~~~~l~~~~~~~~~-tiii~sh 156 (180)
T cd03214 118 ILLLDEPT--SHLDIAHQIELLELLRRLARERGK-TVVMVLH 156 (180)
T ss_pred EEEEeCCc--cCCCHHHHHHHHHHHHHHHHhcCC-EEEEEeC
Confidence 46677774 899999999999999988653233 4444443
No 195
>smart00245 TSPc tail specific protease. tail specific protease
Probab=22.67 E-value=2.4e+02 Score=21.50 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=28.3
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEe
Q 030579 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122 (175)
Q Consensus 79 ~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVlt 122 (175)
+.|++|.++. |+..+.+++.++++.+.+. .++.+||-
T Consensus 28 ~~igYi~i~~------f~~~~~~~~~~~~~~l~~~-~~~~lIiD 64 (192)
T smart00245 28 GNIGYIRIPE------FSEHTSNLVEKAWKKLEKT-NVEGLILD 64 (192)
T ss_pred CcEEEEEEeE------EChhhHHHHHHHHHHHHhC-CCcEEEEE
Confidence 4788888754 5566788899999999855 57888874
No 196
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=22.51 E-value=2.2e+02 Score=18.25 Aligned_cols=42 Identities=17% Similarity=0.239 Sum_probs=25.2
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCC
Q 030579 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 78 ~~~V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
.+++..+.+..+ .+.-+ ..++.+.+.....+. .+.++|-..+
T Consensus 6 ~~~~~ii~l~G~--l~~~~---~~~~~~~~~~~~~~~-~~~viid~~~ 47 (99)
T cd07043 6 RGGVLVVRLSGE--LDAAT---APELREALEELLAEG-PRRLVLDLSG 47 (99)
T ss_pred ECCEEEEEEece--ecccc---hHHHHHHHHHHHHcC-CCEEEEECCC
Confidence 467888888764 33333 455555555544333 6778887666
No 197
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=22.40 E-value=3.8e+02 Score=20.92 Aligned_cols=57 Identities=9% Similarity=0.028 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEE--EEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHHHHHHhcCCCcEEEEe
Q 030579 95 FRPHTVKELIRAFNDARDDSSVGVI--ILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (175)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~~vkvv--VltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV 172 (175)
++..+..++...|..++..+..+.| .|.+.| +++. ....++..|..++.|+++.+
T Consensus 44 I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG-------G~v~----------------~g~~I~d~i~~~~~~v~t~~ 100 (207)
T PRK12553 44 VDDASANDVMAQLLVLESIDPDRDITLYINSPG-------GSVT----------------AGDAIYDTIQFIRPDVQTVC 100 (207)
T ss_pred ECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC-------CcHH----------------HHHHHHHHHHhcCCCcEEEE
Confidence 7789999999999999865433333 334444 2210 12234556666777888777
Q ss_pred eC
Q 030579 173 HL 174 (175)
Q Consensus 173 ~G 174 (175)
.|
T Consensus 101 ~G 102 (207)
T PRK12553 101 TG 102 (207)
T ss_pred Ee
Confidence 66
No 198
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=22.32 E-value=2.5e+02 Score=21.51 Aligned_cols=38 Identities=13% Similarity=0.298 Sum_probs=26.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEe
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVlt 122 (175)
.+-|+.|- +.+|.+....+.+.+..+.......+|+++
T Consensus 149 llllDEPt--~~LD~~~~~~~~~~l~~~~~~~~~tii~vs 186 (213)
T TIGR01277 149 ILLLDEPF--SALDPLLREEMLALVKQLCSERQRTLLMVT 186 (213)
T ss_pred EEEEcCCC--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 46667774 789999999999999888654333444444
No 199
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=22.19 E-value=2.6e+02 Score=21.62 Aligned_cols=40 Identities=18% Similarity=0.391 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCC
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
.+-|+.| .+.+|.....++.+.+.++..+.. +.||+....
T Consensus 152 illlDEP--t~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~ 191 (230)
T TIGR03410 152 LLLLDEP--TEGIQPSIIKDIGRVIRRLRAEGG-MAILLVEQY 191 (230)
T ss_pred EEEecCC--cccCCHHHHHHHHHHHHHHHHcCC-cEEEEEeCC
Confidence 4667777 489999999999999999875433 345554443
No 200
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=21.85 E-value=1.3e+02 Score=20.71 Aligned_cols=23 Identities=22% Similarity=0.537 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhcCCCceEEEEec
Q 030579 101 KELIRAFNDARDDSSVGVIILTG 123 (175)
Q Consensus 101 ~eL~~al~~~~~d~~vkvvVltG 123 (175)
+++.++|+++-.++++.+|++|-
T Consensus 30 ee~~~~l~~l~~~~d~gII~Ite 52 (100)
T PRK02228 30 EKLDEAVEEVLEDDDVGILVMHD 52 (100)
T ss_pred HHHHHHHHHHhhCCCEEEEEEeh
Confidence 66788888886677899999984
No 201
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=21.83 E-value=2.9e+02 Score=19.57 Aligned_cols=38 Identities=18% Similarity=0.380 Sum_probs=27.7
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCC
Q 030579 84 ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 84 ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
+.|++.+. ++.+....|.+.++..+ +.++|+|..++..
T Consensus 73 L~l~~i~~---L~~~~Q~~L~~~l~~~~-~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 73 LYLKNIDR---LSPEAQRRLLDLLKRQE-RSNVRLIASSSQD 110 (138)
T ss_dssp EEEECGCC---S-HHHHHHHHHHHHHCT-TTTSEEEEEECC-
T ss_pred EEECChHH---CCHHHHHHHHHHHHhcC-CCCeEEEEEeCCC
Confidence 55777764 99999999999998865 5567877776654
No 202
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.68 E-value=2.4e+02 Score=21.95 Aligned_cols=40 Identities=8% Similarity=0.130 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCC
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
.|-|+-|- +.+|......+.+.+.++..+.. +.||+....
T Consensus 157 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tvi~vsH~ 196 (235)
T cd03261 157 LLLYDEPT--AGLDPIASGVIDDLIRSLKKELG-LTSIMVTHD 196 (235)
T ss_pred EEEecCCc--ccCCHHHHHHHHHHHHHHHHhcC-cEEEEEecC
Confidence 46677774 89999999999999998865333 344444443
No 203
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.67 E-value=2.5e+02 Score=21.44 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=27.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCC
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
.+-|+-|- +.+|......+.+.+.++..... +.||++...
T Consensus 151 ~lllDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~ 190 (213)
T cd03259 151 LLLLDEPL--SALDAKLREELREELKELQRELG-ITTIYVTHD 190 (213)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcC-CEEEEEecC
Confidence 46677774 78999999999999988764323 345555443
No 204
>PRK10908 cell division protein FtsE; Provisional
Probab=21.62 E-value=2.7e+02 Score=21.39 Aligned_cols=38 Identities=11% Similarity=0.306 Sum_probs=27.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecC
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~ 124 (175)
.+-|+.|- +.+|.....++.+.+..+... .. .+|++..
T Consensus 158 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~~-tiii~sH 195 (222)
T PRK10908 158 VLLADEPT--GNLDDALSEGILRLFEEFNRV-GV-TVLMATH 195 (222)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHC-CC-EEEEEeC
Confidence 46677774 899999999999999988643 33 4444443
No 205
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=21.58 E-value=2.5e+02 Score=21.77 Aligned_cols=40 Identities=8% Similarity=0.155 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecC
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~ 124 (175)
.+-|+.|- +.+|......+.+.+.++..+....+|+++-.
T Consensus 158 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~ 197 (225)
T PRK10247 158 VLLLDEIT--SALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197 (225)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 46677774 89999999999999998865434444444443
No 206
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.54 E-value=2.6e+02 Score=21.43 Aligned_cols=39 Identities=10% Similarity=0.298 Sum_probs=28.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEec
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG 123 (175)
.+-|+.|- +.+|....+.+.+.+.++..+....+|+++-
T Consensus 152 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH 190 (220)
T cd03265 152 VLFLDEPT--IGLDPQTRAHVWEYIEKLKEEFGMTILLTTH 190 (220)
T ss_pred EEEEcCCc--cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 46677774 8999999999999999887543444444444
No 207
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.43 E-value=2.8e+02 Score=20.56 Aligned_cols=39 Identities=15% Similarity=0.303 Sum_probs=27.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecC
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~ 124 (175)
.+-|+.|- +.+|......+.+.+.++..+.. +.++++..
T Consensus 121 llilDEP~--~~LD~~~~~~l~~~l~~~~~~~~-~tiii~sH 159 (178)
T cd03229 121 VLLLDEPT--SALDPITRREVRALLKSLQAQLG-ITVVLVTH 159 (178)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeC
Confidence 46677774 78999999999999998865423 34444443
No 208
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=21.26 E-value=2.5e+02 Score=21.33 Aligned_cols=39 Identities=5% Similarity=0.087 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecC
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~ 124 (175)
.+-|+.|- +.+|.....++.+.+.++..+.. +.||++..
T Consensus 151 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tvi~~sH 189 (213)
T cd03301 151 VFLMDEPL--SNLDAKLRVQMRAELKRLQQRLG-TTTIYVTH 189 (213)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeC
Confidence 46677774 78999999999999988865433 34444443
No 209
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.22 E-value=2.4e+02 Score=22.88 Aligned_cols=40 Identities=15% Similarity=0.472 Sum_probs=30.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecC
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~ 124 (175)
.|-|+.|- +.+|.....+|.+.+..+.......+|++|-.
T Consensus 166 illlDEPt--~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~ 205 (286)
T PRK13646 166 IIVLDEPT--AGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205 (286)
T ss_pred EEEEECCc--ccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 56778874 89999999999999999865444555555544
No 210
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=21.07 E-value=2.6e+02 Score=21.49 Aligned_cols=39 Identities=5% Similarity=0.222 Sum_probs=26.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecC
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~ 124 (175)
.|-|+-|- +.+|....+++.+.+.++..+.. +.||++..
T Consensus 166 lllLDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH 204 (228)
T cd03257 166 LLIADEPT--SALDVSVQAQILDLLKKLQEELG-LTLLFITH 204 (228)
T ss_pred EEEecCCC--CCCCHHHHHHHHHHHHHHHHHcC-CEEEEEeC
Confidence 45566663 78999999999999888865323 34444443
No 211
>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.04 E-value=2.1e+02 Score=22.38 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=25.1
Q ss_pred CCH-HHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCCCC
Q 030579 95 FRP-HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD 134 (175)
Q Consensus 95 l~~-~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG~D 134 (175)
++. +.-.+|.+.|..+....--.|.||+|+| . +.|.+
T Consensus 104 ~tq~eAr~~L~~Fi~~a~~~~~rcv~VihGkG-~--s~g~~ 141 (184)
T COG2840 104 LTQEEARQELGAFIARARAEGLRCVLVIHGKG-R--SKGSK 141 (184)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCC-c--CCCCc
Confidence 443 4555777777777766556788999999 4 66643
No 212
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=20.91 E-value=2.7e+02 Score=21.68 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=27.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEe
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVlt 122 (175)
.|-|+-|- +.+|.....++.+.+.++..+....+|+++
T Consensus 135 lllLDEPt--~gLD~~~~~~l~~~l~~~~~~~~~tii~~s 172 (230)
T TIGR01184 135 VLLLDEPF--GALDALTRGNLQEELMQIWEEHRVTVLMVT 172 (230)
T ss_pred EEEEcCCC--cCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 46677774 899999999999999888654333334443
No 213
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=20.83 E-value=2.9e+02 Score=21.06 Aligned_cols=39 Identities=10% Similarity=0.392 Sum_probs=27.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCC
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
.+-|+-|- +.+|.....++.+.+.++... . +.||+....
T Consensus 159 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~-~tii~vsH~ 197 (216)
T TIGR00960 159 LLLADEPT--GNLDPELSRDIMRLFEEFNRR-G-TTVLVATHD 197 (216)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHC-C-CEEEEEeCC
Confidence 46677774 899999999999999988643 3 344444433
No 214
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.78 E-value=2.7e+02 Score=21.35 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=26.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEe
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVlt 122 (175)
.+-|+-|- +.+|.....++.+.+.++.......+|+++
T Consensus 152 lllLDEPt--~~LD~~~~~~~~~~l~~~~~~~~~tiii~s 189 (220)
T cd03293 152 VLLLDEPF--SALDALTREQLQEELLDIWRETGKTVLLVT 189 (220)
T ss_pred EEEECCCC--CCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 46677774 799999999999999887543333344444
No 215
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=20.65 E-value=2.6e+02 Score=19.30 Aligned_cols=36 Identities=17% Similarity=0.437 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHH-HHHHhhcCCCceEEEEecCCCCccc
Q 030579 93 NAFRPHTVKELIR-AFNDARDDSSVGVIILTGKGTEAFC 130 (175)
Q Consensus 93 Nal~~~~~~eL~~-al~~~~~d~~vkvvVltG~g~~~Fc 130 (175)
|.|+.+...+|.. .++.+.+ .+.++|..++..-.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~--~~~vvv~f~a~wC~~C 37 (113)
T cd02975 1 GLLSDEDRKALKEEFFKEMKN--PVDLVVFSSKEGCQYC 37 (113)
T ss_pred CCCCHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCCCCh
Confidence 4577888888888 5566654 3466666554313445
No 216
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=20.52 E-value=1.4e+02 Score=27.36 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=32.5
Q ss_pred HHHhhcCCCceEEEEecCCCCcccCCCCCCccccCCccchhhhhHhhHHHHHHHHhcCCCcEEEEeeC
Q 030579 107 FNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVHL 174 (175)
Q Consensus 107 l~~~~~d~~vkvvVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G 174 (175)
.+...-.|++-|+|-|=.. =-+-.|.+...+....-. .......++..-...+..+.+|+|.|||=
T Consensus 315 cr~~gl~P~~~VlVaTvRA-LK~HGG~~~~~l~~eNl~-al~~G~~NL~rHIeNik~fGvpvVVAIN~ 380 (557)
T PF01268_consen 315 CRKSGLKPDAVVLVATVRA-LKMHGGVAKDDLNEENLE-ALEKGFANLERHIENIKKFGVPVVVAINR 380 (557)
T ss_dssp HHHHT---SEEEEEEEHHH-HHHHTT--GGGTTS--HH-HHHHHHHHHHHHHHHHHCTT--EEEEEE-
T ss_pred chhcccCcceEEEeeechH-HHhhcCCCccccCccCHH-HHHHHHHHHHHHHHHHHhcCCCeEEEecC
Confidence 3344446766666666533 234555555444332222 22233334566677889999999999984
No 217
>COG4637 Predicted ATPase [General function prediction only]
Probab=20.36 E-value=2.3e+02 Score=24.50 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=32.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCC
Q 030579 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 81 V~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
-..|.+|-|+ |.|.++++.+|...+..+.... .++|.|-..
T Consensus 291 p~ll~ldEPE--~sLHP~lL~~La~~~~sAak~s--Qv~VsTHS~ 331 (373)
T COG4637 291 PPLLLLDEPE--TSLHPDLLPALAELMRSAAKRS--QVIVSTHSP 331 (373)
T ss_pred CceeEecCcc--cccCHhHHHHHHHHHHHhhccc--eEEEEeCCH
Confidence 3468889998 8999999999999999987653 566666543
No 218
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.32 E-value=2.9e+02 Score=20.36 Aligned_cols=37 Identities=8% Similarity=0.405 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEe
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVlt 122 (175)
.+-|+-|. +.+|.....++.+.+.++..+ ...+|+++
T Consensus 116 illlDEPt--~~LD~~~~~~l~~~l~~~~~~-g~tiii~t 152 (173)
T cd03230 116 LLILDEPT--SGLDPESRREFWELLRELKKE-GKTILLSS 152 (173)
T ss_pred EEEEeCCc--cCCCHHHHHHHHHHHHHHHHC-CCEEEEEC
Confidence 46677774 799999999999999998654 33344444
No 219
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=20.29 E-value=1.8e+02 Score=22.90 Aligned_cols=36 Identities=31% Similarity=0.546 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCceEEEEecCCCCcccCC
Q 030579 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSG 132 (175)
Q Consensus 94 al~~~~~~eL~~al~~~~~d~~vkvvVltG~g~~~FcaG 132 (175)
.++.+.++++.+.+.++.+. ..++||+.|.| +|..|
T Consensus 17 ~~~~~~i~~~a~~i~~~~~~-g~~vvvV~ggG--~~a~~ 52 (229)
T cd04239 17 GIDPEVLKEIAREIKEVVDL-GVEVAIVVGGG--NIARG 52 (229)
T ss_pred CCCHHHHHHHHHHHHHHHHC-CCEEEEEECCC--hHHhh
Confidence 78899999999988877543 34789999877 45443
No 220
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=20.25 E-value=2.7e+02 Score=22.36 Aligned_cols=40 Identities=15% Similarity=0.254 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEecCC
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG~g 125 (175)
.|-|+-| .+.||.....++.+.+.++..+... .||++...
T Consensus 164 lllLDEP--t~~LD~~~~~~l~~~l~~~~~~~g~-tiiivsH~ 203 (269)
T PRK11831 164 LIMFDEP--FVGQDPITMGVLVKLISELNSALGV-TCVVVSHD 203 (269)
T ss_pred EEEEcCC--CccCCHHHHHHHHHHHHHHHHhcCc-EEEEEecC
Confidence 5667777 4899999999999999998654333 44444433
No 221
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=20.13 E-value=1.3e+02 Score=24.12 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=13.5
Q ss_pred eEEEEecCCCCcccCCC
Q 030579 117 GVIILTGKGTEAFCSGG 133 (175)
Q Consensus 117 kvvVltG~g~~~FcaG~ 133 (175)
++||+||+| =+=.+|.
T Consensus 15 ~ivi~tGAG-iS~~sGi 30 (242)
T PRK00481 15 RIVVLTGAG-ISAESGI 30 (242)
T ss_pred CEEEEeCCc-cccccCC
Confidence 789999999 6777775
No 222
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.11 E-value=2.6e+02 Score=21.66 Aligned_cols=39 Identities=13% Similarity=0.316 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEec
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG 123 (175)
.+-|+.|- +.+|......+.+.+.++.......+|+++-
T Consensus 165 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH 203 (241)
T cd03256 165 LILADEPV--ASLDPASSRQVMDLLKRINREEGITVIVSLH 203 (241)
T ss_pred EEEEeCcc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 46677774 8999999999999999886543333444443
No 223
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=20.09 E-value=2.7e+02 Score=22.03 Aligned_cols=39 Identities=13% Similarity=0.271 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEec
Q 030579 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (175)
Q Consensus 83 ~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~vkvvVltG 123 (175)
.+-|+-|- +.+|.....++.+.+..+.......+|+++-
T Consensus 172 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tii~isH 210 (258)
T PRK11701 172 LVFMDEPT--GGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210 (258)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 46677774 8999999999999999886543434444444
Done!