Query 030580
Match_columns 175
No_of_seqs 135 out of 1096
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 02:00:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030580.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030580hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_S 50S ribosomal protein L 100.0 3.4E-37 1.2E-41 234.0 6.1 93 83-175 1-93 (110)
2 2zjr_P 50S ribosomal protein L 100.0 5.2E-36 1.8E-40 235.0 5.2 94 82-175 21-114 (134)
3 2ftc_M Mitochondrial ribosomal 100.0 3.2E-35 1.1E-39 223.2 9.3 88 88-175 2-90 (110)
4 1i4j_A 50S ribosomal protein L 100.0 6.2E-35 2.1E-39 221.6 9.0 90 83-175 1-90 (110)
5 1vq8_R 50S ribosomal protein L 100.0 1.7E-32 5.9E-37 219.6 6.4 94 81-175 11-134 (155)
6 3bbo_U Ribosomal protein L22; 100.0 1.9E-33 6.4E-38 233.0 0.0 94 82-175 29-122 (199)
7 3j21_S 50S ribosomal protein L 100.0 6.9E-32 2.4E-36 216.2 6.2 93 82-175 15-136 (155)
8 2zkr_r 60S ribosomal protein L 100.0 5.4E-31 1.8E-35 216.1 8.5 93 82-175 12-136 (184)
9 3iz5_V 60S ribosomal protein L 100.0 5.2E-31 1.8E-35 214.1 7.7 94 81-175 11-137 (171)
10 4a17_Q RPL17, 60S ribosomal pr 100.0 1.3E-30 4.4E-35 213.8 7.8 93 82-175 14-138 (183)
11 3u5e_P L20A, YL17, 60S ribosom 100.0 1.4E-30 4.8E-35 213.7 5.3 93 82-175 12-136 (184)
12 3lvl_A NIFU-like protein; prot 72.2 8 0.00027 29.0 5.7 59 84-142 56-124 (129)
13 2z7e_A ISCU protein, NIFU-like 53.6 13 0.00045 28.9 3.9 59 84-142 55-124 (157)
14 4eb5_C NIFU protein (NIFU-1); 47.7 11 0.00039 29.3 2.7 59 84-142 50-119 (153)
15 1xjs_A NIFU-like protein; SR17 39.9 25 0.00087 26.7 3.6 36 84-119 58-93 (147)
16 3lyv_A Ribosome-associated fac 29.2 24 0.00081 24.0 1.6 16 107-122 12-27 (66)
17 3k2t_A LMO2511 protein; lister 28.2 27 0.00091 23.0 1.7 16 106-121 10-25 (57)
18 2qq4_A Iron-sulfur cluster bio 27.0 44 0.0015 25.1 2.9 36 84-119 56-91 (138)
19 3ka5_A Ribosome-associated pro 25.1 27 0.00093 23.7 1.3 16 106-121 10-25 (65)
20 1su0_B NIFU like protein ISCU; 24.9 56 0.0019 25.2 3.3 36 84-119 57-92 (159)
21 3c1q_A General secretion pathw 24.6 1.5E+02 0.0052 20.5 5.4 35 105-141 24-59 (123)
22 2whn_A PILC, pilus assembly pr 21.9 1.9E+02 0.0065 19.5 5.4 37 102-140 22-59 (116)
No 1
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=100.00 E-value=3.4e-37 Score=234.00 Aligned_cols=93 Identities=39% Similarity=0.432 Sum_probs=91.6
Q ss_pred ceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCC
Q 030580 83 AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEAT 162 (175)
Q Consensus 83 ~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp 162 (175)
||++|.++++++||+|+++||++||||+|+||+.||+|+|+|+|+.|+++|+||.+||++++|+|+|+|||++||||+||
T Consensus 1 me~kA~~~~ir~S~kK~r~va~~IrG~~v~~Al~~L~f~pkkaa~~v~k~L~sA~aNAe~~~gld~d~L~I~~~~v~~g~ 80 (110)
T 3r8s_S 1 METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGP 80 (110)
T ss_dssp CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHSSCCTTSCEEEEEEEEEEE
T ss_pred CeEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHhhCCHHHHHHHHHHHHHHHHhHHHhcCCChhheEEEEEEeCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCC
Q 030580 163 SAKRPRPKAQGRE 175 (175)
Q Consensus 163 ~lKR~~pRArGRA 175 (175)
++||++||||||+
T Consensus 81 ~~KR~~pRA~GR~ 93 (110)
T 3r8s_S 81 SMKRIMPRAKGRA 93 (110)
T ss_dssp EEEEEEECGGGCE
T ss_pred ccCCCCcCCCCCC
Confidence 9999999999996
No 2
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...
Probab=100.00 E-value=5.2e-36 Score=235.03 Aligned_cols=94 Identities=36% Similarity=0.523 Sum_probs=91.8
Q ss_pred CceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCC
Q 030580 82 KAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEA 161 (175)
Q Consensus 82 ~~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kG 161 (175)
.|+++|.++++++||+|+++||++||||+|+||+.||+|||+|+|..|+++|+||++||++|+|+|+|+|||.+||||+|
T Consensus 21 ~~~akA~~~~irvSpkK~r~Va~~IRG~~v~eAl~~L~f~pkKaA~~v~klL~sA~aNAe~n~gld~d~L~I~~i~V~~G 100 (134)
T 2zjr_P 21 RKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVDAG 100 (134)
T ss_dssp CCTTEEEEEEESSCHHHHHHHHHHSTTSBHHHHHHHHHHCCCTTHHHHHHHHTTTHHHHTTTTCCCGGGEEEEEEEEEEC
T ss_pred ceEEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHHHCcHhHHHHHHHHHHHHHHhHHHhcCCChhheEEEEEEECCC
Confidence 46789999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred CCCCCCccCCCCCC
Q 030580 162 TSAKRPRPKAQGRE 175 (175)
Q Consensus 162 p~lKR~~pRArGRA 175 (175)
|++||++||||||+
T Consensus 101 p~lKR~~pRA~GRa 114 (134)
T 2zjr_P 101 PTLKRLIPRARGSA 114 (134)
T ss_dssp CCEEEEEECSTTCE
T ss_pred ccccCCCCCCCCCC
Confidence 99999999999996
No 3
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=100.00 E-value=3.2e-35 Score=223.16 Aligned_cols=88 Identities=24% Similarity=0.295 Sum_probs=86.1
Q ss_pred EeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhhhcCCCC-CCCeEEEEEEEcCCCCCCC
Q 030580 88 SARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFN-EASLVIAKAEVNEATSAKR 166 (175)
Q Consensus 88 ~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe~~~glD-~d~L~I~ea~V~kGp~lKR 166 (175)
+.+++++||+|+++||++||||+|+||+.||+|+|+|+|+.|+++|+||++||++|+|+| +|+|||++||||+||++||
T Consensus 2 ~~~~ir~SpkK~r~va~~IrG~~v~eAl~~L~f~pkkaa~~v~klL~sA~aNA~~~~gld~~~~L~I~~~~v~~g~~~KR 81 (110)
T 2ftc_M 2 CRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAESTSGRGQCLKR 81 (110)
T ss_pred CcccceeCHHHHHHHHHHHcCCcHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHhcCCCCccCeEEEEEEECCCCcccC
Confidence 578999999999999999999999999999999999999999999999999999989999 8999999999999999999
Q ss_pred CccCCCCCC
Q 030580 167 PRPKAQGRE 175 (175)
Q Consensus 167 ~~pRArGRA 175 (175)
++||||||+
T Consensus 82 ~~prA~GRa 90 (110)
T 2ftc_M 82 IRYHGRGRF 90 (110)
T ss_pred CCCCCCCCC
Confidence 999999996
No 4
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=100.00 E-value=6.2e-35 Score=221.60 Aligned_cols=90 Identities=42% Similarity=0.539 Sum_probs=88.3
Q ss_pred ceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCC
Q 030580 83 AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEAT 162 (175)
Q Consensus 83 ~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp 162 (175)
|+++|.++++++||+|+++||++||||+|+||+.||+|||+|+|+.|+++|+||++||++|+|+|+|+|||++||||+||
T Consensus 1 ~~~kA~~~~ir~SpkK~r~va~~IrG~~v~~Al~~L~~~pkkaa~~v~klL~sA~aNAe~n~gld~d~L~I~~~~v~~g~ 80 (110)
T 1i4j_A 1 MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGP 80 (110)
T ss_dssp CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEEE
T ss_pred CeEEEEeCCccCCHHHHHHHHHHHcCCcHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHhcCCChhheEEEEEEECCCC
Confidence 57999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred CCCCCccCCCCCC
Q 030580 163 SAKRPRPKAQGRE 175 (175)
Q Consensus 163 ~lKR~~pRArGRA 175 (175)
+ ++||||||+
T Consensus 81 ~---~~pRA~GRa 90 (110)
T 1i4j_A 81 A---VLPRARGRA 90 (110)
T ss_dssp E---ECSCSSSCC
T ss_pred e---EeecCCCCC
Confidence 9 999999996
No 5
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Probab=99.97 E-value=1.7e-32 Score=219.63 Aligned_cols=94 Identities=23% Similarity=0.400 Sum_probs=91.2
Q ss_pred CCceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhh------------------------------CCccchhHHH
Q 030580 81 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILEL------------------------------MPYRACYPIF 130 (175)
Q Consensus 81 ~~~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~f------------------------------spKKaAk~I~ 130 (175)
...+++|.++++++||+|+++||++||||++++|+.||+| ||+|+|+.|+
T Consensus 11 ~~k~~kA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~~~~~~gr~PkKaa~~il 90 (155)
T 1vq8_R 11 PDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFL 90 (155)
T ss_dssp GGGEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTCSSSSBEECCHHHHHHHH
T ss_pred CCceEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhcceeccceeccCCCCccccccccccCCCcHHHHHHHH
Confidence 3468999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCCCCCCCccCCCCCC
Q 030580 131 KLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRE 175 (175)
Q Consensus 131 KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp~lKR~~pRArGRA 175 (175)
++|+||.+||+++ |+|+|+|||.||+||+||++||++|||+||+
T Consensus 91 klL~sA~aNAe~k-gld~d~L~I~~i~v~kg~~~kR~~pRA~GRa 134 (155)
T 1vq8_R 91 DLLENAVGNADHQ-GFDGEAMTIKHVAAHKVGEQQGRKPRAMGRA 134 (155)
T ss_dssp HHHHHHHHHHHHT-TSCGGGSEEEEEEEEEEEEECCEEECGGGCE
T ss_pred HHHHHHHHHHHHc-CCChhheEEEEEEECCCccccCCCCCCCCCC
Confidence 9999999999987 9999999999999999999999999999996
No 6
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.97 E-value=1.9e-33 Score=232.97 Aligned_cols=94 Identities=64% Similarity=0.996 Sum_probs=91.6
Q ss_pred CceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCC
Q 030580 82 KAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEA 161 (175)
Q Consensus 82 ~~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kG 161 (175)
.++++|.++++++||+|+++||++||||+|+||+.||+|+|+|+|..|+++|+||++||++|+|+|+|+|||++|+||+|
T Consensus 29 ~~eakA~~r~iRvSpkK~R~Vad~IRG~~V~eAl~iL~f~PkKaA~~V~KlLkSA~ANAe~n~GLD~d~L~I~~i~VnkG 108 (199)
T 3bbo_U 29 CDEITTRGYSISMSVDKARRVIDQIRGRSYAETLMILELMPYRACYPIFKLIYSAAANASHNKQFNKANLIISKAEVNKG 108 (199)
T ss_dssp -CCBCCCCSCCSSCSSSSSTTHHHHTTCBTTTTTTTGGGCCCTTHHHHHHHHHHHTTHHHHTSSCCSSSCEEEECCCCBC
T ss_pred CeEEEEEeCCccccHHHHHHHHHHHCCCcHHHHHHHHHHCCHhHHHHHHHHHHHHHHhHHhccCCChhheEEEEEEECCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCCCC
Q 030580 162 TSAKRPRPKAQGRE 175 (175)
Q Consensus 162 p~lKR~~pRArGRA 175 (175)
|++||++|||||||
T Consensus 109 p~lKR~~pRArGRa 122 (199)
T 3bbo_U 109 ITLKKVKPRARGRS 122 (199)
T ss_dssp CCCCCCCCSSSSCS
T ss_pred CcccCCCCCCCCCC
Confidence 99999999999996
No 7
>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.97 E-value=6.9e-32 Score=216.16 Aligned_cols=93 Identities=26% Similarity=0.345 Sum_probs=90.5
Q ss_pred CceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhh-----------------------------CCccchhHHHHH
Q 030580 82 KAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILEL-----------------------------MPYRACYPIFKL 132 (175)
Q Consensus 82 ~~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~f-----------------------------spKKaAk~I~Kl 132 (175)
.++++|.++++++||+|+++||++||||++++|+.||+| ||+|+|+.|+++
T Consensus 15 ~~~akA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~~~~~gr~PkKaa~~ilkl 94 (155)
T 3j21_S 15 KRMARASARDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALKRPVPLKRYNDSQGHKPGKGFGPGRYPVKVAKAIKKV 94 (155)
T ss_dssp HHEEEEEEEEEESCHHHHHHHHHHHTTCBHHHHHHHHHHHHHTCSCEECCSSCTTCCBCCSSSCSBEECCHHHHHHHHHH
T ss_pred CeeEEEEeCCcccCHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccceeeeeecCCCccccccCCCcCcCcHHHHHHHHHH
Confidence 368999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHhhhhcCCCCCCCeEEEEEEEcCCCCCCCCccCCCCCC
Q 030580 133 IYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRE 175 (175)
Q Consensus 133 L~SA~aNAe~~~glD~d~L~I~ea~V~kGp~lKR~~pRArGRA 175 (175)
|+||++||++ +|||+|+|||.||+||+||++||++|||+||+
T Consensus 95 L~sA~aNAe~-kgld~d~L~I~~i~vnkgp~~kR~~pRA~GR~ 136 (155)
T 3j21_S 95 LLNVKNNAVQ-KGLDPDKLKIIHIAAHKGPVLRGWYPRAFGRA 136 (155)
T ss_dssp HHHHHHHHHH-HTCCGGGCEEEEEEEEEEEEECCEEECSTTCE
T ss_pred HHHHHHHHHH-cCCChhheEEEEEEecCCCcccCCCCCCCCCC
Confidence 9999999987 69999999999999999999999999999996
No 8
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.97 E-value=5.4e-31 Score=216.10 Aligned_cols=93 Identities=22% Similarity=0.344 Sum_probs=89.5
Q ss_pred CceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHh----------h----------------------CCccchhHH
Q 030580 82 KAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE----------L----------------------MPYRACYPI 129 (175)
Q Consensus 82 ~~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~----------f----------------------spKKaAk~I 129 (175)
..+++|.++++++||+|+++||++||||++++|+.||+ | ||+|+|++|
T Consensus 12 ~k~akA~~~~lrvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPF~r~~~gvg~~~q~~~~~~~~GR~PkKaa~~i 91 (184)
T 2zkr_r 12 TKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFL 91 (184)
T ss_dssp TTEEEEEECSCCSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCCSTTSCSCSBEECCHHHHHHH
T ss_pred CeeEEEEecCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeccCCCcccccccccccccCCCcHHHHHHH
Confidence 45899999999999999999999999999999999999 9 999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCCCCCCCccCCCCCC
Q 030580 130 FKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRE 175 (175)
Q Consensus 130 ~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp~lKR~~pRArGRA 175 (175)
+++|+||.+||+++ |||+|+|||.||+||+||++||++|||+||+
T Consensus 92 lklLksA~aNAe~k-glD~d~L~I~~i~Vnkg~~~kR~~pRA~GRa 136 (184)
T 2zkr_r 92 LHMLKNAESNAELK-GLDVDSLVIEHIQVNKAPKMRRRTYRAHGRI 136 (184)
T ss_dssp HHHHHHHHHHHHHH-TSCTTTCEEEEEEEC-CCCEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHc-CCChhheEEEEEEECCCccCcCCCCCCCCCC
Confidence 99999999999985 9999999999999999999999999999995
No 9
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_V
Probab=99.97 E-value=5.2e-31 Score=214.07 Aligned_cols=94 Identities=23% Similarity=0.279 Sum_probs=90.3
Q ss_pred CCceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhh---------------------------------CCccchh
Q 030580 81 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILEL---------------------------------MPYRACY 127 (175)
Q Consensus 81 ~~~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~f---------------------------------spKKaAk 127 (175)
..++++|.++|+++||+|+++||++||||++++|+.||+| ||+|+|+
T Consensus 11 ~~~~akA~~~~lrvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPf~r~~~gvg~~~q~~~~~~~~~gr~PkKaa~ 90 (171)
T 3iz5_V 11 PTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPAKSAR 90 (171)
T ss_dssp TTTEEEEEEEEEESCHHHHHHHHHHSCSCCSHHHHHHHHHHHHTSSCEECSSCCSSCCCCSCCBTTBSCSCEECCHHHHH
T ss_pred CCeeEEEEeCCcccCHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCccccccccccccccccCCchHHHH
Confidence 3468999999999999999999999999999999999997 6999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCCCCCCCccCCCCCC
Q 030580 128 PIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRE 175 (175)
Q Consensus 128 ~I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp~lKR~~pRArGRA 175 (175)
.|+++|+||.+||++ +|||+|+|||.||+||+||++||++|||+||+
T Consensus 91 ~ilklL~sA~aNAe~-kglD~d~L~I~~i~vnkgp~~kR~~pRA~GRa 137 (171)
T 3iz5_V 91 FILDLLKNAESNAEV-KGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRI 137 (171)
T ss_dssp HHHHHHHHHHHHHHH-HTCCSSCCEEEEEEEEECCCBCCEEEETTTEE
T ss_pred HHHHHHHHHHHHHHH-cCCChhheEEEEEEeccCCcccCCCCCCCCCC
Confidence 999999999999997 59999999999999999999999999999995
No 10
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q
Probab=99.96 E-value=1.3e-30 Score=213.76 Aligned_cols=93 Identities=28% Similarity=0.365 Sum_probs=89.8
Q ss_pred CceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhh--------------------------------CCccchhHH
Q 030580 82 KAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILEL--------------------------------MPYRACYPI 129 (175)
Q Consensus 82 ~~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~f--------------------------------spKKaAk~I 129 (175)
.++++|.++|+++||+|+++||++||||++++|+.+|+| ||+|+|++|
T Consensus 14 ~k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~K~~vPfrrynggvg~~~q~k~~g~~~Gr~PkKaa~~i 93 (183)
T 4a17_Q 14 AKAVKTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTGCIGRTAQAHEFGRTQGRWPVKSVKVI 93 (183)
T ss_dssp TSEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHTTSSCEECCSCCTTCCBCGGGGGTTCSBEECCHHHHHHH
T ss_pred CeeEEEEeCCccCchHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccchhhhhcCCccCcCcHHHHHHH
Confidence 468999999999999999999999999999999999995 899999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCCCCCCCccCCCCCC
Q 030580 130 FKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRE 175 (175)
Q Consensus 130 ~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp~lKR~~pRArGRA 175 (175)
+++|+||++||++ +|||+|+|||.||+||+||.+||++|||+||+
T Consensus 94 lklLksA~aNAe~-kgLD~d~L~I~hi~Vnkgp~~kR~~pRA~GRa 138 (183)
T 4a17_Q 94 LGLLDNLSANAQA-KSLNTANLVIQHGQVNRAQKGRRRTYRAHGRI 138 (183)
T ss_dssp HHHHHHHHHHTTT-TTCCSTTEEEEEEEEEECCCEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHh-cCCChhheEEEEEEECCCCcccCcCccCCCCc
Confidence 9999999999997 49999999999999999999999999999996
No 11
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 4b6a_P 1s1i_N 3izc_V 3izs_V 3jyw_N
Probab=99.96 E-value=1.4e-30 Score=213.69 Aligned_cols=93 Identities=27% Similarity=0.369 Sum_probs=89.9
Q ss_pred CceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhh--------------------------------CCccchhHH
Q 030580 82 KAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILEL--------------------------------MPYRACYPI 129 (175)
Q Consensus 82 ~~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~f--------------------------------spKKaAk~I 129 (175)
.++++|.++|+++||+|+++||++||||++++|+.||+| ||+|+|++|
T Consensus 12 ~k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~k~~VPf~rf~~gvg~~~q~~~~g~~~GR~PkKaa~~i 91 (184)
T 3u5e_P 12 AKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKEFGVTKARWPAKSVKFV 91 (184)
T ss_dssp GGEEEEEEEEECSCHHHHHHHHTTTTTCBHHHHHHHHHHHHTTSSCEECCSSCTTCCCCGGGGGGTCSCEECCHHHHHHH
T ss_pred CceEEEEeCCccccHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCCcccchhhccCCccCCCchHHHHHH
Confidence 368999999999999999999999999999999999995 899999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCCCCCCCccCCCCCC
Q 030580 130 FKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRE 175 (175)
Q Consensus 130 ~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp~lKR~~pRArGRA 175 (175)
+++|+||.+||++ +|||+|+|||.||+||+||++||++|||+||+
T Consensus 92 lklLksA~aNAe~-kgLD~d~L~I~~i~Vnkgp~~kR~~pRA~GRa 136 (184)
T 3u5e_P 92 QGLLQNAAANAEA-KGLDATKLYVSHIQVNQAPKQRRRTYRAHGRI 136 (184)
T ss_dssp HHHHHHHHHHHHH-TTCCTTTEEEEEEEEEECCCEEEEEEEGGGEE
T ss_pred HHHHHHHHHHHHH-cCCChhheEEEEEEECCCCcccCCCCCCCCCC
Confidence 9999999999997 79999999999999999999999999999985
No 12
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=72.15 E-value=8 Score=28.98 Aligned_cols=59 Identities=20% Similarity=0.170 Sum_probs=45.2
Q ss_pred eEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHH--------HhhCCcc--chhHHHHHHHHHHHhhhh
Q 030580 84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMI--------LELMPYR--ACYPIFKLIYSAAANGVH 142 (175)
Q Consensus 84 e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~q--------L~fspKK--aAk~I~KlL~SA~aNAe~ 142 (175)
.++..+.-.-+|-==.-.++.+|.||+++||..+ |.+.|.| .|.+..+.|+.|+.+.+.
T Consensus 56 d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~~i~~~L~l~p~r~~Ca~La~~Al~~Al~~y~~ 124 (129)
T 3lvl_A 56 DARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKS 124 (129)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCCHHHHHHHHTCCGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHH
Confidence 4556666666777778899999999999999643 4455644 677778999999999865
No 13
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=53.58 E-value=13 Score=28.94 Aligned_cols=59 Identities=12% Similarity=0.087 Sum_probs=46.1
Q ss_pred eEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHH--------Hh-hCC--ccchhHHHHHHHHHHHhhhh
Q 030580 84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMI--------LE-LMP--YRACYPIFKLIYSAAANGVH 142 (175)
Q Consensus 84 e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~q--------L~-fsp--KKaAk~I~KlL~SA~aNAe~ 142 (175)
.++..+.-.-+|-==.-.++.+|.|++++||..+ |. +.| .+.|-+-.+.|+.|+.+++.
T Consensus 55 d~~F~~~GCais~ASaS~mte~v~Gkt~~EA~~i~~~~i~e~Lg~l~p~R~~Ca~La~~Al~~Al~~y~~ 124 (157)
T 2z7e_A 55 DVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAIKDYLM 124 (157)
T ss_dssp EEEEEEESCTTHHHHHHHHHHHHTTSBHHHHHHCCHHHHHHHHTCCCCSSCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHhccHHHHhcccCcchhHhHHHHHHHHHHHHHHHHH
Confidence 4566667777777778899999999999999864 31 334 55788888999999998854
No 14
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=47.67 E-value=11 Score=29.29 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=44.0
Q ss_pred eEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHH--------Hh-hCC--ccchhHHHHHHHHHHHhhhh
Q 030580 84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMI--------LE-LMP--YRACYPIFKLIYSAAANGVH 142 (175)
Q Consensus 84 e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~q--------L~-fsp--KKaAk~I~KlL~SA~aNAe~ 142 (175)
.++..+.-.-+|-==.-.++.+|.|++++||..+ |. +.| .+.|.+-.+.|+.|+.+.+.
T Consensus 50 D~~F~g~GCais~ASaS~mtelv~GKtleEA~~i~~~~i~~~L~glpp~Ri~CA~La~~AL~~Al~~y~~ 119 (153)
T 4eb5_C 50 DIKFQTFGCAAAIATSSMATEMAKGKTIEEALKITRDAVAEALGGLPKQKMHCSNLAADALRRAIVDYFR 119 (153)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHTTCBHHHHTTCCHHHHHHHHTCCCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCcHHHHHHHHHHHHHHcCCCHHHHHHhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 4555666666777778899999999999999743 21 234 44688888999999999853
No 15
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=39.87 E-value=25 Score=26.73 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=30.0
Q ss_pred eEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHh
Q 030580 84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE 119 (175)
Q Consensus 84 e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~ 119 (175)
.++..+.-.-+|-==.-.++.+|.|++++||..+..
T Consensus 58 d~~f~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~ 93 (147)
T 1xjs_A 58 DAKFEGEGCSISMASASMMTQAIKGKDIETALSMSK 93 (147)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 566667777777777889999999999999999854
No 16
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=29.19 E-value=24 Score=24.01 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=13.1
Q ss_pred cCCCHHHHHHHHhhCC
Q 030580 107 RGRSYEETLMILELMP 122 (175)
Q Consensus 107 RGk~V~eAi~qL~fsp 122 (175)
+=|+++||+.||+...
T Consensus 12 kpMsveEAv~qMel~g 27 (66)
T 3lyv_A 12 KPMDVEEARLQMELLG 27 (66)
T ss_dssp CEECHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHcCC
Confidence 4589999999999653
No 17
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=28.15 E-value=27 Score=22.97 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=12.9
Q ss_pred HcCCCHHHHHHHHhhC
Q 030580 106 IRGRSYEETLMILELM 121 (175)
Q Consensus 106 IRGk~V~eAi~qL~fs 121 (175)
++=|+++||+.||+..
T Consensus 10 ~kpmsveEAv~qmel~ 25 (57)
T 3k2t_A 10 LKPMDSEEAVLQMNLL 25 (57)
T ss_dssp -CCBCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhC
Confidence 5678999999999953
No 18
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=27.02 E-value=44 Score=25.06 Aligned_cols=36 Identities=11% Similarity=0.246 Sum_probs=29.1
Q ss_pred eEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHh
Q 030580 84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE 119 (175)
Q Consensus 84 e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~ 119 (175)
.++..+.-.-+|-==.-.++.+|.|++++||..+..
T Consensus 56 d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~ 91 (138)
T 2qq4_A 56 DIRFQGQGCAISTASASLMTEAVKGKKVAEALELSR 91 (138)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHTTSBHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 455666666677777889999999999999998874
No 19
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=25.06 E-value=27 Score=23.67 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=13.2
Q ss_pred HcCCCHHHHHHHHhhC
Q 030580 106 IRGRSYEETLMILELM 121 (175)
Q Consensus 106 IRGk~V~eAi~qL~fs 121 (175)
++=|+++||+.||+..
T Consensus 10 ~kpMsveEAv~qmel~ 25 (65)
T 3ka5_A 10 IKPMSEEEAVLEMELL 25 (65)
T ss_dssp CSCBCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhC
Confidence 3568999999999953
No 20
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=24.89 E-value=56 Score=25.18 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=29.2
Q ss_pred eEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHh
Q 030580 84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE 119 (175)
Q Consensus 84 e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~ 119 (175)
.++..+.-.-+|-==.-.++.+|.|++++||..+..
T Consensus 57 d~~F~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~ 92 (159)
T 1su0_B 57 DIAFAGNGCTISTASSSMMTDAVIGKSKEEALALAD 92 (159)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 456666666777777889999999999999999854
No 21
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=24.57 E-value=1.5e+02 Score=20.47 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=21.0
Q ss_pred HHc-CCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhh
Q 030580 105 QIR-GRSYEETLMILELMPYRACYPIFKLIYSAAANGV 141 (175)
Q Consensus 105 ~IR-Gk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe 141 (175)
+++ |.++.+|+..+.-.-.. ..+.+.+..+....+
T Consensus 24 ll~sGv~l~~aL~~~~~~~~~--~~l~~~l~~i~~~l~ 59 (123)
T 3c1q_A 24 LVQSGMPLEECLRAVAEQSEK--PRIRTMLVAVRAKVT 59 (123)
T ss_dssp HHHTTCCHHHHHHHHHHTCSC--HHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHcCC--HHHHHHHHHHHHHHH
Confidence 443 99999999999764322 233444444444443
No 22
>2whn_A PILC, pilus assembly protein PILC; transport, transmembrane, pilus biogenesis, protein transpor; 2.05A {Thermus thermophilus}
Probab=21.88 E-value=1.9e+02 Score=19.54 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=21.2
Q ss_pred HHHHHc-CCCHHHHHHHHhhCCccchhHHHHHHHHHHHhh
Q 030580 102 VIDQIR-GRSYEETLMILELMPYRACYPIFKLIYSAAANG 140 (175)
Q Consensus 102 Var~IR-Gk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNA 140 (175)
++-+++ |.++.+|+..+.-.... ..+.+.+..+....
T Consensus 22 La~ll~sGi~l~~aL~~~~~~~~~--~~~~~~~~~i~~~l 59 (116)
T 2whn_A 22 LATMLGAGLTLLQALAILERQTEN--RKFREILKQVRTDV 59 (116)
T ss_dssp HHHHHHHTCCHHHHHHHHTTSCCS--HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 333444 99999999998754321 23344444444444
Done!