Query 030580
Match_columns 175
No_of_seqs 135 out of 1096
Neff 4.6
Searched_HMMs 13730
Date Tue Mar 26 02:00:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030580.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030580hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2zjrp1 d.55.1.1 (P:8-134) Rib 100.0 2.3E-34 1.7E-38 222.0 5.2 93 83-175 15-107 (127)
2 d1i4ja_ d.55.1.1 (A:) Ribosoma 100.0 1.4E-33 1E-37 212.7 9.0 90 83-175 1-90 (110)
3 d2gycq1 d.55.1.1 (Q:5-110) Rib 100.0 6.5E-35 4.7E-39 218.7 -8.1 89 87-175 1-89 (106)
4 d1vqor1 d.55.1.1 (R:1-150) Rib 100.0 2E-30 1.4E-34 204.2 7.3 95 80-175 9-133 (150)
5 d1r9pa_ d.224.1.2 (A:) NifU-li 84.1 0.73 5.3E-05 33.0 5.0 67 84-150 55-131 (134)
6 d1fs1b1 a.157.1.1 (B:86-140) C 59.9 2.6 0.00019 26.0 2.3 19 99-117 35-53 (55)
7 d1wfza_ d.224.1.2 (A:) Iron-su 40.5 10 0.00073 27.0 3.2 59 84-142 51-119 (130)
8 d2ouxa1 a.118.26.1 (A:6-135) M 34.2 11 0.00083 25.5 2.5 38 100-137 81-118 (130)
9 d1nexa1 a.157.1.1 (A:116-185) 34.1 17 0.0012 23.0 3.2 21 99-119 36-56 (70)
10 d1xjsa_ d.224.1.2 (A:) NifU {B 27.6 26 0.0019 24.5 3.7 58 84-141 58-144 (147)
11 d2a6aa1 c.55.1.9 (A:1-103) Hyp 25.7 28 0.002 22.7 3.3 36 121-162 29-64 (103)
No 1
>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]}
Probab=100.00 E-value=2.3e-34 Score=222.02 Aligned_cols=93 Identities=37% Similarity=0.519 Sum_probs=90.3
Q ss_pred ceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCC
Q 030580 83 AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEAT 162 (175)
Q Consensus 83 ~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp 162 (175)
+++.|..+|+++||+|+++|+++||||+|+||+.||+|+|+|+|..|.++|+||++||++++|+|+|+|||.+||||+||
T Consensus 15 ~~~~A~~k~ir~Sp~K~r~v~~~IrG~~v~eAl~~L~f~~kkaa~~v~k~l~sA~aNA~~~~~~d~~~L~I~~~~v~~G~ 94 (127)
T d2zjrp1 15 KPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVDAGP 94 (127)
T ss_dssp CTTEEEEEEESSCHHHHHHHHHHSTTSBHHHHHHHHHHCCCTTHHHHHHHHTTTHHHHTTTTCCCGGGEEEEEEEEEECC
T ss_pred chhhhhhcccccCHHHHHHHHHHHcCCcHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHhcccCcccceEEEEEEECCCC
Confidence 45679999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred CCCCCccCCCCCC
Q 030580 163 SAKRPRPKAQGRE 175 (175)
Q Consensus 163 ~lKR~~pRArGRA 175 (175)
++||++|||||||
T Consensus 95 ~~KR~~prArGRa 107 (127)
T d2zjrp1 95 TLKRLIPRARGSA 107 (127)
T ss_dssp CEEEEEECSTTCE
T ss_pred cccCCCCCcCCCC
Confidence 9999999999996
No 2
>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]}
Probab=100.00 E-value=1.4e-33 Score=212.71 Aligned_cols=90 Identities=42% Similarity=0.546 Sum_probs=87.6
Q ss_pred ceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCC
Q 030580 83 AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEAT 162 (175)
Q Consensus 83 ~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp 162 (175)
||++|..+|+++||+|+++|+++||||+|+||+.||+|+|+|+|+.|.|+|+||++||++++|+|+|+|||.++|||+||
T Consensus 1 Me~~A~~k~ir~Sp~K~r~va~~IrG~~v~~Al~~L~f~~~kaa~~i~k~l~SA~aNA~~~~~~d~~~L~I~~~~v~~G~ 80 (110)
T d1i4ja_ 1 MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGP 80 (110)
T ss_dssp CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEEE
T ss_pred CcEEEEcCccccCHHHHHHHHHHHcCCcHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhccCCCccceEEEEEEECCCc
Confidence 78999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred CCCCCccCCCCCC
Q 030580 163 SAKRPRPKAQGRE 175 (175)
Q Consensus 163 ~lKR~~pRArGRA 175 (175)
++| ||||||+
T Consensus 81 ~~k---~rarGRa 90 (110)
T d1i4ja_ 81 AVL---PRARGRA 90 (110)
T ss_dssp EEC---SCSSSCC
T ss_pred eEC---hhhccCC
Confidence 876 7999996
No 3
>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]}
Probab=99.97 E-value=6.5e-35 Score=218.71 Aligned_cols=89 Identities=39% Similarity=0.447 Sum_probs=87.0
Q ss_pred EEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCCCCCC
Q 030580 87 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKR 166 (175)
Q Consensus 87 A~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp~lKR 166 (175)
|..+|+|+||+|+++||++||||+|+||+.||+|+|+|+|+.|.|+|+||++||++++|+|+|+|||.++|||+||++||
T Consensus 1 A~~k~ir~Sp~K~r~va~~IrG~~v~~A~~~L~f~~kkaa~~i~k~l~sA~aNA~~~~~~d~~~L~I~~~~v~~G~~~KR 80 (106)
T d2gycq1 1 AKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKR 80 (106)
T ss_dssp CCCCCCCCCSSSSCSSSSSSSSSCSHHHHSSSSSCCSSTTSSTTTSSSSSSTTTSTTTTCCTTTEEECCCCCCCCCBCCC
T ss_pred CCcCccccCHHHHHHHHHHHcCCcHHHHHHHHccCCcccchHHHHHHHHHHHHHHHhcCCCHHHhEEEEEEECCCCcccC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCC
Q 030580 167 PRPKAQGRE 175 (175)
Q Consensus 167 ~~pRArGRA 175 (175)
++||||||+
T Consensus 81 ~~~rarGRa 89 (106)
T d2gycq1 81 IMPRAKGRA 89 (106)
T ss_dssp BCCCTTTCC
T ss_pred cCCcccCCC
Confidence 999999997
No 4
>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=99.96 E-value=2e-30 Score=204.19 Aligned_cols=95 Identities=23% Similarity=0.394 Sum_probs=90.5
Q ss_pred CCCceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHh------------------------------hCCccchhHH
Q 030580 80 NKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE------------------------------LMPYRACYPI 129 (175)
Q Consensus 80 ~~~~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~------------------------------fspKKaAk~I 129 (175)
..+..++|..+++++||+|+++||++||||+|++|+.||+ |+|+|+|+.|
T Consensus 9 ~~~~~~kA~~~~~riS~kK~~~va~~IrGk~v~~A~~~L~~v~~kk~avp~~~~~~~v~~~~~~~~~~~g~~p~kaa~~i 88 (150)
T d1vqor1 9 DPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAF 88 (150)
T ss_dssp CTTTEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTCSSCSBEECCHHHHHHH
T ss_pred CCCceEEEEeCCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhcCCCcccChHHHHHHH
Confidence 4456899999999999999999999999999999999997 6899999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCCCCCCCccCCCCCC
Q 030580 130 FKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRE 175 (175)
Q Consensus 130 ~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp~lKR~~pRArGRA 175 (175)
+++|+||.+||++ .|+|+|+|||.+||||+||++||++|||||||
T Consensus 89 ~kll~sa~aNA~~-~~~d~~~L~I~~~~v~kG~~~KR~~prArGRa 133 (150)
T d1vqor1 89 LDLLENAVGNADH-QGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRA 133 (150)
T ss_dssp HHHHHHHHHHHHH-TTSCGGGSEEEEEEEEEEEEECCEEECGGGCE
T ss_pred HHHHHHHHHHHHh-cCCChhHeEEEEEEECCCccccCcCcccCCCC
Confidence 9999999999987 58999999999999999999999999999996
No 5
>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]}
Probab=84.09 E-value=0.73 Score=33.02 Aligned_cols=67 Identities=16% Similarity=0.126 Sum_probs=53.9
Q ss_pred eEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHh--------hCC--ccchhHHHHHHHHHHHhhhhcCCCCCCC
Q 030580 84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE--------LMP--YRACYPIFKLIYSAAANGVHNMGFNEAS 150 (175)
Q Consensus 84 e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~--------fsp--KKaAk~I~KlL~SA~aNAe~~~glD~d~ 150 (175)
.++..+.---+|--=+-.++.+|+|++++||..+-. ..| .+.|....++|+.|+++.+...|.+..+
T Consensus 55 di~f~~~GCais~Asas~~~e~i~Gkt~~ea~~i~~~~i~e~l~~~p~r~~Ca~L~~~al~~al~~y~~k~g~~~~~ 131 (134)
T d1r9pa_ 55 DAKFKTYGCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYKAKQGLEHHH 131 (134)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHSSSSBHHHHTTSHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHHTTTCCCSC
T ss_pred EEEEEeccCcccHhHHHHHHHHHHhCCHHHHHHhcchHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhcCCchhh
Confidence 567777778888888999999999999999976533 233 5578888999999999998777877653
No 6
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.90 E-value=2.6 Score=26.05 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=14.9
Q ss_pred HHHHHHHHcCCCHHHHHHH
Q 030580 99 VRRVIDQIRGRSYEETLMI 117 (175)
Q Consensus 99 lr~Var~IRGk~V~eAi~q 117 (175)
+..||++|+||+++|=-.+
T Consensus 35 c~~vA~~ikgKt~eeiR~~ 53 (55)
T d1fs1b1 35 CKTVANMIKGKTPEEIRKT 53 (55)
T ss_dssp HHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHH
Confidence 3578999999999875443
No 7
>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}
Probab=40.50 E-value=10 Score=26.95 Aligned_cols=59 Identities=19% Similarity=0.118 Sum_probs=46.6
Q ss_pred eEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHH--------HhhCC--ccchhHHHHHHHHHHHhhhh
Q 030580 84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMI--------LELMP--YRACYPIFKLIYSAAANGVH 142 (175)
Q Consensus 84 e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~q--------L~fsp--KKaAk~I~KlL~SA~aNAe~ 142 (175)
+++..+.-.-+|-==.-.++.++.||+++||..+ |...| .+.|.+-.+.|+.|+++.+.
T Consensus 51 di~F~~~GC~is~AsaS~~tel~~Gkt~~ea~~i~~~~i~~~l~l~p~R~~CA~La~~aL~~Al~~y~~ 119 (130)
T d1wfza_ 51 DARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKL 119 (130)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHTTSBHHHHHHCCHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeeCCchhHHHHHHHHHHHhccCHHHHHhcCcHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 5677777777888888999999999999998754 22333 55788888999999999854
No 8
>d2ouxa1 a.118.26.1 (A:6-135) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}
Probab=34.19 E-value=11 Score=25.51 Aligned_cols=38 Identities=11% Similarity=0.115 Sum_probs=31.1
Q ss_pred HHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHH
Q 030580 100 RRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAA 137 (175)
Q Consensus 100 r~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~ 137 (175)
..++..|..|+.++|..+|+-.|...+..|+..|..-.
T Consensus 81 ~~~a~il~~m~~DDaadll~~L~~~~~~~iL~~l~~~~ 118 (130)
T d2ouxa1 81 SYAADMLAEMYTDNAVDLLNMLDKSQKAKYLSLLSSEE 118 (130)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHcChHHHHHHHHHCCHHHHHHHHHcCCHHH
Confidence 45788899999999999999999888887777665443
No 9
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=34.14 E-value=17 Score=23.04 Aligned_cols=21 Identities=38% Similarity=0.463 Sum_probs=17.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHh
Q 030580 99 VRRVIDQIRGRSYEETLMILE 119 (175)
Q Consensus 99 lr~Var~IRGk~V~eAi~qL~ 119 (175)
+..||++|+||+.+|=-.++.
T Consensus 36 c~~vA~~ikgkt~eeiR~~f~ 56 (70)
T d1nexa1 36 CKVVAEMIRGRSPEEIRRTFN 56 (70)
T ss_dssp HHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHccCCHHHHHHHhC
Confidence 357899999999998777765
No 10
>d1xjsa_ d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 1423]}
Probab=27.63 E-value=26 Score=24.49 Aligned_cols=58 Identities=12% Similarity=0.165 Sum_probs=43.6
Q ss_pred eEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhh-----------------------------CCccchhHHHHHHH
Q 030580 84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILEL-----------------------------MPYRACYPIFKLIY 134 (175)
Q Consensus 84 e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~f-----------------------------spKKaAk~I~KlL~ 134 (175)
.++..+.-.-+|-==+-.+++.|.|+++++|..+.+. +-++.|-.-.+.|+
T Consensus 58 d~~f~~~GCai~~ASasil~e~~~gk~~~~a~~l~~~~~~~l~~~~~~~~~~~~~l~~l~~v~~~p~R~~Ca~L~~~Al~ 137 (147)
T d1xjsa_ 58 DAKFEGEGCSISMASASMMTQAIKGKDIETALSMSKIFSDMMQGKEYDDSIDLGDIEALQGVSKFPARIKCATLSWKALE 137 (147)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHHHHHHHHHHHHHCSCCSSCCCHHHHHHHHHTTSTTTHHHHHHHHHHHH
T ss_pred EEEeeecccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCchhhhhHHHHhhCcCcCcchhHHHHHHHHHHH
Confidence 5667777777777888899999999999999998751 11245666678888
Q ss_pred HHHHhhh
Q 030580 135 SAAANGV 141 (175)
Q Consensus 135 SA~aNAe 141 (175)
.|+++.+
T Consensus 138 ~al~~~~ 144 (147)
T d1xjsa_ 138 KGVAKEE 144 (147)
T ss_dssp HHSCSTT
T ss_pred HHHHHhh
Confidence 8877654
No 11
>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]}
Probab=25.67 E-value=28 Score=22.70 Aligned_cols=36 Identities=3% Similarity=-0.109 Sum_probs=26.1
Q ss_pred CCccchhHHHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCC
Q 030580 121 MPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEAT 162 (175)
Q Consensus 121 spKKaAk~I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp 162 (175)
.+++-++.+..+|+++..++ +++.++ |..+.|+.||
T Consensus 29 ~~~~hs~~l~~~i~~~l~~~----~~~~~d--i~~i~v~~GP 64 (103)
T d2a6aa1 29 GEKKHAEILPVVVKKLLDEL----DLKVKD--LDVVGVGIGP 64 (103)
T ss_dssp SCGGGGGHHHHHHHHHHHHH----TCCGGG--CSEEEEECCS
T ss_pred CchHHHHHHHHHHHHHHHHc----CCCHHH--hHHHhhcCCC
Confidence 45677889999998888876 344444 4667788888
Done!