RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 030580
(175 letters)
>gnl|CDD|214342 CHL00034, rpl22, ribosomal protein L22.
Length = 117
Score = 174 bits (443), Expect = 5e-57
Identities = 68/98 (69%), Positives = 77/98 (78%)
Query: 77 NKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSA 136
K EV A A+Y+ MSAHK RRVIDQIRGRSYEE LMILE MPYRACYPI KL+YSA
Sbjct: 2 MKKKSTTEVYALAKYIRMSAHKARRVIDQIRGRSYEEALMILEFMPYRACYPILKLVYSA 61
Query: 137 AANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
AAN HNMG N+A+L I+KAEV+E + KR RP+AQGR
Sbjct: 62 AANASHNMGLNKANLFISKAEVDEGPTLKRFRPRAQGR 99
>gnl|CDD|234793 PRK00565, rplV, 50S ribosomal protein L22; Reviewed.
Length = 112
Score = 112 bits (282), Expect = 1e-32
Identities = 39/91 (42%), Positives = 56/91 (61%)
Query: 84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
E A ARY+ +S K R V D IRG+ EE L IL+ P +A + K++ SA AN +N
Sbjct: 2 EAKAKARYVRVSPRKARLVADLIRGKKVEEALAILKFSPKKAARLVKKVLKSAIANAENN 61
Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
G + +LV+ +A V+E + KR RP+A+GR
Sbjct: 62 HGLDIDNLVVKEAYVDEGPTLKRFRPRARGR 92
>gnl|CDD|143988 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e. This family
includes L22 from prokaryotes and chloroplasts and L17
from eukaryotes.
Length = 105
Score = 110 bits (277), Expect = 6e-32
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 87 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGF 146
A ARY+ +S K R V D IRG+S EE L ILE +P +A I KL+ SA AN +N G
Sbjct: 1 AVARYIRISPKKARLVADLIRGKSVEEALAILEFVPKKAAKIILKLLKSAVANAENNKGL 60
Query: 147 NEASLVIAKAEVNEATSAKRPRPKAQGR 174
+ +L I + V++ + KR RP+A+GR
Sbjct: 61 DPDNLYIKEIFVDKGPTLKRFRPRARGR 88
>gnl|CDD|238205 cd00336, Ribosomal_L22, Ribosomal protein L22/L17e. L22 (L17 in
eukaryotes) is a core protein of the large ribosomal
subunit. It is the only ribosomal protein that
interacts with all six domains of 23S rRNA, and is one
of the proteins important for directing the proper
folding and stabilizing the conformation of 23S rRNA.
L22 is the largest protein contributor to the surface of
the polypeptide exit channel, the tunnel through which
the polypeptide product passes. L22 is also one of six
proteins located at the putative translocon binding site
on the exterior surface of the ribosome.
Length = 105
Score = 104 bits (263), Expect = 8e-30
Identities = 37/90 (41%), Positives = 49/90 (54%)
Query: 85 VSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNM 144
A RYL +S K R V IRG S +E L LE +P +A I KL+ SA AN +N
Sbjct: 1 AKAKGRYLRISPKKARLVARLIRGMSVDEALAQLEFVPKKAAKIILKLLKSAEANAENNG 60
Query: 145 GFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
+ L I +VN+ + KR RP+A+GR
Sbjct: 61 LDDPDKLYIKHIQVNKGPTLKRRRPRARGR 90
>gnl|CDD|223169 COG0091, RplV, Ribosomal protein L22 [Translation, ribosomal
structure and biogenesis].
Length = 120
Score = 93.5 bits (233), Expect = 3e-25
Identities = 38/97 (39%), Positives = 54/97 (55%)
Query: 78 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAA 137
K + E A ARYL +S K R V D IRG+ E L ILE +P +A + K++ SA
Sbjct: 4 KVEPEMEAKAKARYLRISPKKARLVADLIRGKKVAEALAILEFVPKKAAKLVKKVLESAI 63
Query: 138 ANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
AN +N G + LV++ V++ KR P+A+GR
Sbjct: 64 ANAENNKGLDPDKLVVSHIAVDKGPVLKRFMPRARGR 100
>gnl|CDD|130116 TIGR01044, rplV_bact, ribosomal protein L22, bacterial type. This
model decribes bacterial and chloroplast ribosomal
protein L22 [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 103
Score = 83.3 bits (206), Expect = 2e-21
Identities = 37/88 (42%), Positives = 52/88 (59%)
Query: 87 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGF 146
A AR++ +S K R V D IRG+S + L IL P +A I K++ SA AN HN G
Sbjct: 1 AKARFVRISPRKARLVADLIRGKSVSQALDILRFTPKKAAPLIKKVLASAIANAEHNYGL 60
Query: 147 NEASLVIAKAEVNEATSAKRPRPKAQGR 174
+ +LV+ V+E + KR RP+A+GR
Sbjct: 61 DADNLVVVTIFVDEGPTLKRIRPRAKGR 88
>gnl|CDD|138835 PRK12279, PRK12279, 50S ribosomal protein L22/unknown domain fusion
protein; Provisional.
Length = 311
Score = 45.8 bits (108), Expect = 3e-06
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 90 RYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEA 149
R +H+S K VID +R + E + IL P + + KL+ SA +N HN +
Sbjct: 8 RNIHISHRKASLVIDLVRNKPVHEAIRILSNTPKKFAPIVLKLLNSAISNVQHNSKDMDP 67
Query: 150 S-LVIAKAEVNEATSAKRPRPKAQG 173
S L I K N+ + KR P+A+G
Sbjct: 68 SKLYIYKIVANQGPTMKRTLPRAKG 92
>gnl|CDD|217188 pfam02689, Herpes_Helicase, Helicase. This family consists of
Helicases from the Herpes viruses. Helicases are
responsible for the unwinding of DNA and are essential
for replication and completion of the viral life cycle.
Length = 801
Score = 29.6 bits (67), Expect = 1.0
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 91 YLHM-SAHKVRRVIDQIRGRSYEETLMILELMPYRA 125
L+M S KVR ++++IR S E T +L +R+
Sbjct: 8 ILNMTSMAKVRPIVERIRELSAERTAPPPDLSWFRS 43
>gnl|CDD|225953 COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin
PilY1 [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 1036
Score = 28.6 bits (64), Expect = 2.2
Identities = 8/41 (19%), Positives = 10/41 (24%)
Query: 132 LIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQ 172
L SA F + L V + P Q
Sbjct: 295 LGDSAHTYNARPDTFGDVQLTTYWLAVVSKPNGTSPVGLNQ 335
>gnl|CDD|223040 PHA03311, PHA03311, helicase-primase subunit BBLF4; Provisional.
Length = 782
Score = 28.3 bits (64), Expect = 2.3
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 91 YLHM-SAHKVRRVIDQIRGRS 110
L+M S K+R ++D+IR S
Sbjct: 17 ILNMTSMAKIRPIVDRIRSLS 37
>gnl|CDD|211620 TIGR01038, L22_arch, ribosomal protein
L22(archaeal)/L17(eukaryotic/archaeal). This model
describes the ribosomal protein of the eukaryotic
cytosol and of the Archaea, variously designated as L17,
L22, and L23. The corresponding bacterial homolog,
described by a separate model, is designated L22
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 150
Score = 27.4 bits (61), Expect = 2.6
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 122 PYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
P +A I K++ +A AN G + LVI + N+ +R P+A GR
Sbjct: 81 PVKAAKFILKVLQNAEANA-EYKGLDVEKLVIIHIQANKGPKIRRWMPRAFGR 132
>gnl|CDD|240306 PTZ00178, PTZ00178, 60S ribosomal protein L17; Provisional.
Length = 181
Score = 27.3 bits (61), Expect = 3.4
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 122 PYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
P ++ + L+ +A AN G + LVI+ +VN A +R +A GR
Sbjct: 84 PEKSVKFVLSLLKNAEANAEAK-GLDVEKLVISHVQVNRAPRGRRRTYRAHGR 135
>gnl|CDD|236394 PRK09169, PRK09169, hypothetical protein; Validated.
Length = 2316
Score = 27.0 bits (60), Expect = 6.4
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 12/59 (20%)
Query: 62 ISSAQKRGI----SPPNNRNKTNKKAEVSASARYLHMSAHK--------VRRVIDQIRG 108
+ Q+ G+ P R + + ++ AR LH A + +R I+ I G
Sbjct: 1853 LEELQQHGLLDGPPAPGARARAVTEEDIRQLARTLHARARQAEARITPMLRAAIEGIGG 1911
>gnl|CDD|150568 pfam09910, DUF2139, Uncharacterized protein conserved in archaea
(DUF2139). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 339
Score = 26.7 bits (59), Expect = 8.2
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 26 HNPLILRRDQAGFTSRTDFSRKLSHTH 52
H P + R G + DF+ K SH H
Sbjct: 56 HAPAVYRGKGEG-RATIDFTNKYSHVH 81
>gnl|CDD|179794 PRK04223, rpl22p, 50S ribosomal protein L22P; Reviewed.
Length = 153
Score = 26.0 bits (58), Expect = 8.7
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 122 PYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
P +A KL+ +A AN + G + LVI ++ K P+A GR
Sbjct: 83 PVKAAKAFLKLLENAEANAEYK-GLDTEKLVIVHIAAHKGRVIKGYMPRAFGR 134
>gnl|CDD|130918 TIGR01859, fruc_bis_ald_, fructose-1,6-bisphosphate aldolase, class
II, various bacterial and amitochondriate protist. This
model represents of one of several subtypes of the class
II fructose-1,6-bisphosphate aldolase, an enzyme of
glycolysis. The subtypes are split into several models
to allow separation of a family of tagatose bisphosphate
aldolases. This form is found in Gram-positive bacteria,
a variety of Gram-negative, and in amitochondriate
protists. The class II enzymes share homology with
tagatose bisphosphate aldolase but not with class I
aldolase [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 282
Score = 26.2 bits (58), Expect = 9.2
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 16 PTCLATRQLDHNP---LILRRDQAGFTSRTDFSRKLSHTHNEIFNSKKIISSAQKRGIS 71
P L LDH ++ +AGF+S L N + +KK++ A +G+S
Sbjct: 76 PVAL---HLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEEN-LALTKKVVEIAHAKGVS 130
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.130 0.368
Gapped
Lambda K H
0.267 0.0861 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,536,988
Number of extensions: 747607
Number of successful extensions: 623
Number of sequences better than 10.0: 1
Number of HSP's gapped: 622
Number of HSP's successfully gapped: 25
Length of query: 175
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 85
Effective length of database: 6,945,742
Effective search space: 590388070
Effective search space used: 590388070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.1 bits)