RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 030580
(175 letters)
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 199
Score = 141 bits (358), Expect = 2e-43
Identities = 61/100 (61%), Positives = 76/100 (76%)
Query: 75 NRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIY 134
+ + K E++ + MS K RRVIDQIRGRSY ETLMILELMPYRACYPIFKLIY
Sbjct: 22 HHPEPGKCDEITTRGYSISMSVDKARRVIDQIRGRSYAETLMILELMPYRACYPIFKLIY 81
Query: 135 SAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
SAAAN HN FN+A+L+I+KAEVN+ + K+ +P+A+GR
Sbjct: 82 SAAANASHNKQFNKANLIISKAEVNKGITLKKVKPRARGR 121
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L*
1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q*
2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P*
1pnu_Q 1pny_Q 1vor_T ...
Length = 134
Score = 138 bits (350), Expect = 8e-43
Identities = 34/113 (30%), Positives = 61/113 (53%)
Query: 62 ISSAQKRGISPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELM 121
+++ ++ + + + + A A+Y+ MS KVR V+D IRG+S ++ +L +
Sbjct: 1 MTAPEQTFRNKKQRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFI 60
Query: 122 PYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
P A P+ K++ SA AN +HN E L + +A V+ + KR P+A+G
Sbjct: 61 PRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGS 113
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA
binding, RNA binding protein; 1.80A {Thermus
thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s*
1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V
2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W
2wdj_W ...
Length = 110
Score = 120 bits (304), Expect = 3e-36
Identities = 38/91 (41%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
E A ARY+ +S KVR V+D IRG+S EE IL R Y + K++ SAAAN V+N
Sbjct: 2 EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNN 61
Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
E L + A V+E P+A+GR
Sbjct: 62 HDALEDRLYVKAAYVDE---GPAVLPRARGR 89
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S
2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S
2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Length = 110
Score = 115 bits (291), Expect = 4e-34
Identities = 36/91 (39%), Positives = 48/91 (52%)
Query: 84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
E A R+ SA KVR V D IRG+ + L IL +A + K++ SA AN HN
Sbjct: 2 ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHN 61
Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
G + L + K V+E S KR P+A+GR
Sbjct: 62 DGADIDDLKVTKIFVDEGPSMKRIMPRAKGR 92
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial
ribosome, large ribosomal subunit, ribosomal R ribosome;
12.10A {Bos taurus} PDB: 3iy9_M
Length = 110
Score = 96.8 bits (242), Expect = 7e-27
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 89 ARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNE 148
R + S K+ + IRG S ++ L LE + I +++ A V +
Sbjct: 3 RRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEF 62
Query: 149 AS-LVIAKAEVNEATSAKRPRPKAQGR 174
S L IA++ KR R +GR
Sbjct: 63 RSNLYIAESTSGRGQCLKRIRYHGRGR 89
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R*
1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R*
1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R*
1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Length = 155
Score = 68.3 bits (167), Expect = 3e-15
Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 31/127 (24%)
Query: 78 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE------------------ 119
+ + A R MS + + +I+G++ E + LE
Sbjct: 8 EADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGV 67
Query: 120 ------------LMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRP 167
P +A L+ +A N + GF+ ++ I ++ +
Sbjct: 68 GHKSKVDGWDAGRYPEKASKAFLDLLENAVGNA-DHQGFDGEAMTIKHVAAHKVGEQQGR 126
Query: 168 RPKAQGR 174
+P+A GR
Sbjct: 127 KPRAMGR 133
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_V
Length = 171
Score = 63.0 bits (153), Expect = 4e-13
Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 34/132 (25%)
Query: 76 RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE-------LMPYR---- 124
R N A R L + R IR + LE +P+R
Sbjct: 6 REANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCG 65
Query: 125 ----------------------ACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEAT 162
+ I L+ +A +N G + +L ++ +VN+A
Sbjct: 66 GVGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAE-VKGLDVDTLYVSHIQVNQAQ 124
Query: 163 SAKRPRPKAQGR 174
+R +A GR
Sbjct: 125 KQRRRTYRAHGR 136
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Q 4a1c_Q 4a1e_Q
Length = 183
Score = 63.1 bits (153), Expect = 4e-13
Identities = 28/131 (21%), Positives = 44/131 (33%), Gaps = 33/131 (25%)
Query: 76 RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELM-------------- 121
R N+ V SA L + V+ I+G + E L+ +
Sbjct: 8 REPANQAKAVKTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTG 67
Query: 122 ------------------PYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATS 163
P ++ I L+ + +AN N A+LVI +VN A
Sbjct: 68 CIGRTAQAHEFGRTQGRWPVKSVKVILGLLDNLSANAQA-KSLNTANLVIQHGQVNRAQK 126
Query: 164 AKRPRPKAQGR 174
+R +A GR
Sbjct: 127 GRRRTYRAHGR 137
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 56.5 bits (136), Expect = 1e-10
Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 33/127 (25%)
Query: 80 NKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE-------------------- 119
N + L + R I+G + L+
Sbjct: 10 NPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGR 69
Query: 120 ------------LMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRP 167
P ++ + ++ +A +N G + SLVI +VN+A +R
Sbjct: 70 CAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAEL-KGLDVDSLVIEHIQVNKAPKMRRR 128
Query: 168 RPKAQGR 174
+A GR
Sbjct: 129 TYRAHGR 135
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 56.1 bits (135), Expect = 2e-10
Identities = 27/131 (20%), Positives = 42/131 (32%), Gaps = 33/131 (25%)
Query: 76 RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELM-------------- 121
TN SA YL +S R I G + LE +
Sbjct: 6 ATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNS 65
Query: 122 ------------------PYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATS 163
P ++ + L+ +AAAN G + L ++ +VN+A
Sbjct: 66 SIGRTAQGKEFGVTKARWPAKSVKFVQGLLQNAAANAE-AKGLDATKLYVSHIQVNQAPK 124
Query: 164 AKRPRPKAQGR 174
+R +A GR
Sbjct: 125 QRRRTYRAHGR 135
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.006
Identities = 26/161 (16%), Positives = 49/161 (30%), Gaps = 34/161 (21%)
Query: 23 QLDHNPLILRRDQAGFTSR-----TDFSRKLSHT---HNEIFNSKKIISSAQKRGISPPN 74
H ++ + T + KL + H I + I + + PP
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 75 NRN----------KTNKKAEVSASAR--YLHMS--AHKVRRVIDQIRGR-SYEETLMILE 119
K + E R +L K+R S TL L+
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 120 LMPYRACY-----PIFKLIYSAAANGVHNMGFNEASLVIAK 155
Y+ Y P ++ + +A + + + E +L+ +K
Sbjct: 529 F--YKP-YICDNDPKYERLVNAILDFLPKI---EENLICSK 563
Score = 32.1 bits (72), Expect = 0.084
Identities = 30/161 (18%), Positives = 48/161 (29%), Gaps = 52/161 (32%)
Query: 8 RILLPSPP-PTCLATRQLDH--NPLILRRDQAGFTSRTDFS-RKLSHTHN-EIFNSKKII 62
R LL S P CL L + N F + S + L T ++ +
Sbjct: 235 RRLLKSKPYENCLLV--LLNVQNAKAWN----AF----NLSCKILLTTRFKQVTDF---- 280
Query: 63 SSAQKRGISPPNNRNKTNKKAEV-SASARYLHMSAHKVRRV------------------- 102
SA ++ + T EV S +YL + R
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 103 ---IDQIRGRSYEETLMILE-----LMP--YRACYP---IF 130
D + + ++ I+E L P YR + +F
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.52
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 20/91 (21%)
Query: 89 ARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKL----IYSAAANGVHNM 144
++L + V + + +++ L + L + CY L I++ AA +
Sbjct: 62 GKFLGYVSSLV----EPSKVGQFDQVLNLC-LTEFENCY----LEGNDIHALAA---KLL 109
Query: 145 GFNEASLV----IAKAEVNEATSAKRPRPKA 171
N+ +LV + K + AKRP K
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKK 140
Score = 26.9 bits (59), Expect = 4.2
Identities = 30/179 (16%), Positives = 51/179 (28%), Gaps = 45/179 (25%)
Query: 17 TCLATRQLDHNPLILRRDQAGFTSRTD-------FSRKLSHTHNEIF-NSKKIIS----- 63
T + L P LR G T + + + + F + +K I+
Sbjct: 252 TA---KLLGFTPGELRSYLKGATGHSQGLVTAVAIA--ETDSWESFFVSVRKAITVLFFI 306
Query: 64 --SAQK---RGISPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMIL 118
+ PP+ + + E S M + I + E+ +
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPS----PMLS---------ISNLTQEQVQDYV 353
Query: 119 ELMPYRACYPIFKLIYSAAANGVHNM---GFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
+ P K + + NG N+ G + SL AK P Q R
Sbjct: 354 NKT--NSHLPAGKQVEISLVNGAKNLVVSGPPQ-SLY---GLNLTLRKAKAPSGLDQSR 406
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY
crystallography, metalloenzyme, calcium ION; HET: GDP;
1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1
d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A
1rle_A*
Length = 692
Score = 26.9 bits (59), Expect = 4.1
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 21 TRQLDHNPLILRRDQAGFTSRTDFSRKLSHTHNEIFNSKKIISSAQKRGIS---PPNNRN 77
T + LILRR Q F ++ L F ++ P +N +
Sbjct: 21 TDKFSSQELILRRGQN-FQVLMIMNKGLGSNERLEFIVSTGPYPSESAMTKAVFPLSNGS 79
Query: 78 KTNKKAEV-SASARYLHMSAH 97
A + +++ L +S
Sbjct: 80 SGGWSAVLQASNGNTLTISIS 100
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue
transglutaminase,acyltransferase; 2.50A {Pagrus major}
SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Length = 695
Score = 26.5 bits (58), Expect = 6.3
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 21 TRQLDHNPLILRRDQAGFTSRTDFSRKLSHTHNEIF 56
TR++D LI+RR Q F+ S L H+
Sbjct: 24 TREIDRERLIVRRGQP-FSITLQCSDSLPPKHHLEL 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.130 0.368
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,504,285
Number of extensions: 136575
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 21
Length of query: 175
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 88
Effective length of database: 4,272,666
Effective search space: 375994608
Effective search space used: 375994608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)